RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13030
(1218 letters)
>d1ziva1 d.3.1.3 (A:28-337) Calpain large subunit, catalytic domain
(domain II) {Human (Homo sapiens), calpain 9 [TaxId:
9606]}
Length = 310
Score = 267 bits (684), Expect = 9e-82
Identities = 131/376 (34%), Positives = 188/376 (50%), Gaps = 67/376 (17%)
Query: 58 NYHAIKRACREKGILYEDPDFPPGPKLLFRNKKAPVQSLVWMRPHEMCQRPKFYSEDSLQ 117
++ +++ C ++G L+ED DFP LF +++ + VW RP ++
Sbjct: 1 SFEQMRQECLQRGTLFEDADFPASNSSLFYSERPQIP-FVWK-------RPGEIVKN--- 49
Query: 118 GRFDFEAGRLGDAWFLAAISSLTLTPKFLDRVIPPEQSFDPATNYCGLFRPKFYSEDSLQ 177
P+F+
Sbjct: 50 -------------------------PEFILGGATR------------------------- 59
Query: 178 GRFDFEAGRLGDAWFLAAISSLTLTPKFLDRVIPPEQSFDPATNYCGLFRFRFWHFGEWK 237
D G LGD W LAAI+SLTL K L RVIP +QSF P Y G+F F+FW EW
Sbjct: 60 --TDICQGELGDCWLLAAIASLTLNQKALARVIPQDQSFGP--GYAGIFHFQFWQHSEWL 115
Query: 238 EILVDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRALQDLTG 297
++++DDRLPTF+ RLV+LHS + EFW+ALLEKAYAK G YE L GGS A++D TG
Sbjct: 116 DVVIDDRLPTFRDRLVFLHSADHNEFWSALLEKAYAKLNGSYEAL-KGGSAIEAMEDFTG 174
Query: 298 GIVQSFALTNQDRYLTFQVLNSAVPRSSLLISSIKLEKEQKRQLRLRNGLITQHAYSVTG 357
G+ ++F +++L A+ R SLL I + + R GLI HAYSVTG
Sbjct: 175 GVAETFQTKEAPENF-YEILEKALKRGSLLGCFIDTRSAAESEARTPFGLIKGHAYSVTG 233
Query: 358 LARVRGPLGETPLVRLRNPWARGEWTGPWSERSWEWDGLSERDKELLSIRVSNDGEFWMS 417
+ +V L+R+RNPW + EW G WS+ S EW + +++ L +DGEFWM+
Sbjct: 234 IDQVSFRGQRIELIRIRNPWGQVEWNGSWSDSSPEWRSVGPAEQKRLCHTALDDGEFWMA 293
Query: 418 FEDFAKHFTHLDLVHV 433
F+DF HF +++ ++
Sbjct: 294 FKDFKAHFDKVEICNL 309
Score = 144 bits (363), Expect = 2e-38
Identities = 69/153 (45%), Positives = 94/153 (61%), Gaps = 2/153 (1%)
Query: 928 WKEILVDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRALQDL 987
W ++++DDRLPTF+ RLV+LHS + EFW+ALLEKAYAK G YE L GGS A++D
Sbjct: 114 WLDVVIDDRLPTFRDRLVFLHSADHNEFWSALLEKAYAKLNGSYEAL-KGGSAIEAMEDF 172
Query: 988 TGGIVQSFALTNQDRYLTFQVLNSAVPRSSLLISSIKLEKEQKRQLRLRNGLITQHAYSV 1047
TGG+ ++F +++L A+ R SLL I + + R GLI HAYSV
Sbjct: 173 TGGVAETFQTKEAPENF-YEILEKALKRGSLLGCFIDTRSAAESEARTPFGLIKGHAYSV 231
Query: 1048 TGLARVRGPLGETPLVRLRNPWARGEWTGPWSE 1080
TG+ +V L+R+RNPW + EW G WS+
Sbjct: 232 TGIDQVSFRGQRIELIRIRNPWGQVEWNGSWSD 264
Score = 109 bits (273), Expect = 1e-26
Identities = 37/120 (30%), Positives = 64/120 (53%)
Query: 712 WKEKLEGIKNNVLTVLILPDGKSLVAKLLVKYPLEVDHAYSVTGLARVRGPLGETPLVRL 771
++ + +K L + + ++ + L HAYSVTG+ +V L+R+
Sbjct: 190 YEILEKALKRGSLLGCFIDTRSAAESEARTPFGLIKGHAYSVTGIDQVSFRGQRIELIRI 249
Query: 772 RNPWARGEWTGPWSERSWEWDGLSERDKELLSIRVSNDGEFWMSFEDFAKHFTHLDLVHV 831
RNPW + EW G WS+ S EW + +++ L +DGEFWM+F+DF HF +++ ++
Sbjct: 250 RNPWGQVEWNGSWSDSSPEWRSVGPAEQKRLCHTALDDGEFWMAFKDFKAHFDKVEICNL 309
Score = 39.4 bits (91), Expect = 0.002
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 859 VTMLEAARISFYGCYENLTHGGSTTRALQDLTGGIVQSFALTNQDRYLTFQVLNSAVPRS 918
+LE A G YE L GGS A++D TGG+ ++F +++L A+ R
Sbjct: 143 SALLEKAYAKLNGSYEAL-KGGSAIEAMEDFTGGVAETFQTKEAPENF-YEILEKALKRG 200
Query: 919 SLLISSI 925
SLL I
Sbjct: 201 SLLGCFI 207
>d2r9fa1 d.3.1.3 (A:33-354) Calpain large subunit, catalytic domain
(domain II) {Rat (Rattus norvegicus), mu-type [TaxId:
10116]}
Length = 322
Score = 253 bits (646), Expect = 3e-76
Identities = 121/305 (39%), Positives = 166/305 (54%), Gaps = 9/305 (2%)
Query: 129 DAWFLAAISSLTLTPKFLDRVIPPEQSFDPATNYCGLFRPKFYSEDSLQGRFDFEAGRLG 188
D F SL + + T P+F + + R D G LG
Sbjct: 26 DDAFPPVSHSLGFKELGPNSSKTYGIKWKRPTELLS--NPQFIVDGAT--RTDICQGALG 81
Query: 189 DAWFLAAISSLTLTPKFLDRVIPPEQSFDPATNYCGLFRFRFWHFGEWKEILVDDRLPTF 248
D W LAAI+SLTL L RV+P QSF Y G+F F+ W FGEW +++VDD LPT
Sbjct: 82 DCWLLAAIASLTLNETILHRVVPYGQSFQE--GYAGIFHFQLWQFGEWVDVVVDDLLPTK 139
Query: 249 QGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRALQDLTGGIVQSFALTNQ 308
G+LV++HS EFW+ALLEKAYAK G YE L GG T+ A +D TGG+ + + L
Sbjct: 140 DGKLVFVHSAQGNEFWSALLEKAYAKVNGSYEAL-SGGCTSEAFEDFTGGVTEWYDLQKA 198
Query: 309 DRYLTFQVLNSAVPRSSLLISSIKLEKEQKRQLRLRNGLITQHAYSVTGLARVRGPLGET 368
L +Q++ A+ R SLL SI + + + L+ HAYSVT +V
Sbjct: 199 PSDL-YQIILKALERGSLLGCSINISDIRDLEAITFKNLVRGHAYSVTDAKQVTYQGQRV 257
Query: 369 PLVRLRNPWARGEWTGPWSERSWEWDGLSERDKELLSIRVSNDGEFWMSFEDFAKHFTHL 428
L+R+RNPW EW GPWS+ S+EW+ + ++E L ++ DGEFWMSF DF + FT L
Sbjct: 258 NLIRMRNPWGEVEWKGPWSDNSYEWNKVDPYEREQLRVK-MEDGEFWMSFRDFIREFTKL 316
Query: 429 DLVHV 433
++ ++
Sbjct: 317 EICNL 321
Score = 145 bits (366), Expect = 1e-38
Identities = 66/153 (43%), Positives = 90/153 (58%), Gaps = 2/153 (1%)
Query: 928 WKEILVDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRALQDL 987
W +++VDD LPT G+LV++HS EFW+ALLEKAYAK G YE L GG T+ A +D
Sbjct: 127 WVDVVVDDLLPTKDGKLVFVHSAQGNEFWSALLEKAYAKVNGSYEAL-SGGCTSEAFEDF 185
Query: 988 TGGIVQSFALTNQDRYLTFQVLNSAVPRSSLLISSIKLEKEQKRQLRLRNGLITQHAYSV 1047
TGG+ + + L L +Q++ A+ R SLL SI + + + L+ HAYSV
Sbjct: 186 TGGVTEWYDLQKAPSDL-YQIILKALERGSLLGCSINISDIRDLEAITFKNLVRGHAYSV 244
Query: 1048 TGLARVRGPLGETPLVRLRNPWARGEWTGPWSE 1080
T +V L+R+RNPW EW GPWS+
Sbjct: 245 TDAKQVTYQGQRVNLIRMRNPWGEVEWKGPWSD 277
Score = 108 bits (271), Expect = 3e-26
Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 1/128 (0%)
Query: 704 FQKILRSHWKEKLEGIKNNVLTVLILPDGKSLVAKLLVKYPLEVDHAYSVTGLARVRGPL 763
QK ++ L+ ++ L + + + L HAYSVT +V
Sbjct: 195 LQKAPSDLYQIILKALERGSLLGCSINISDIRDLEAITFKNLVRGHAYSVTDAKQVTYQG 254
Query: 764 GETPLVRLRNPWARGEWTGPWSERSWEWDGLSERDKELLSIRVSNDGEFWMSFEDFAKHF 823
L+R+RNPW EW GPWS+ S+EW+ + ++E L ++ DGEFWMSF DF + F
Sbjct: 255 QRVNLIRMRNPWGEVEWKGPWSDNSYEWNKVDPYEREQLRVK-MEDGEFWMSFRDFIREF 313
Query: 824 THLDLVHV 831
T L++ ++
Sbjct: 314 TKLEICNL 321
Score = 40.2 bits (93), Expect = 0.001
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 859 VTMLEAARISFYGCYENLTHGGSTTRALQDLTGGIVQSFALTNQDRYLTFQVLNSAVPRS 918
+LE A G YE L GG T+ A +D TGG+ + + L L +Q++ A+ R
Sbjct: 156 SALLEKAYAKVNGSYEAL-SGGCTSEAFEDFTGGVTEWYDLQKAPSDL-YQIILKALERG 213
Query: 919 SLLISSIKLW 928
SLL SI +
Sbjct: 214 SLLGCSINIS 223
>d1mdwa_ d.3.1.3 (A:) Calpain large subunit, catalytic domain
(domain II) {Rat (Rattus norvegicus), M-type [TaxId:
10116]}
Length = 323
Score = 252 bits (643), Expect = 7e-76
Identities = 123/305 (40%), Positives = 169/305 (55%), Gaps = 9/305 (2%)
Query: 129 DAWFLAAISSLTLTPKFLDRVIPPEQSFDPATNYCGLFRPKFYSEDSLQGRFDFEAGRLG 188
D F A SSL + T C P+F + R D G LG
Sbjct: 27 DPSFPALPSSLGFKELGPYSSKTRGIEWKRPTEICA--DPQFIIGGAT--RTDICQGALG 82
Query: 189 DAWFLAAISSLTLTPKFLDRVIPPEQSFDPATNYCGLFRFRFWHFGEWKEILVDDRLPTF 248
D+W LAAI+SLTL + L RV+P +QSF NY G+F F+FW +GEW E++VDDRLPT
Sbjct: 83 DSWLLAAIASLTLNEEILARVVPLDQSFQE--NYAGIFHFQFWQYGEWVEVVVDDRLPTK 140
Query: 249 QGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRALQDLTGGIVQSFALTNQ 308
G L+++HS +EFW+ALLEKAYAK GCYE L GG+TT +D TGGI + + L
Sbjct: 141 DGELLFVHSAEGSEFWSALLEKAYAKINGCYEAL-SGGATTEGFEDFTGGIAEWYELRKP 199
Query: 309 DRYLTFQVLNSAVPRSSLLISSIKLEKEQKRQLRLRNGLITQHAYSVTGLARVRGPLGET 368
L F+++ A+ + SLL SI + + L+ HAYSVTG V
Sbjct: 200 PPNL-FKIIQKALEKGSLLGCSIDITSAADSEAVTYQKLVKGHAYSVTGAEEVESSGSLQ 258
Query: 369 PLVRLRNPWARGEWTGPWSERSWEWDGLSERDKELLSIRVSNDGEFWMSFEDFAKHFTHL 428
L+R+RNPW + EWTG W++ W+ + + L+ DGEFWMSF DF +H++ L
Sbjct: 259 KLIRIRNPWGQVEWTGKWNDNCPSWNTVDPEVRANLT-ERQEDGEFWMSFSDFLRHYSRL 317
Query: 429 DLVHV 433
++ ++
Sbjct: 318 EICNL 322
Score = 149 bits (376), Expect = 5e-40
Identities = 68/153 (44%), Positives = 92/153 (60%), Gaps = 2/153 (1%)
Query: 928 WKEILVDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRALQDL 987
W E++VDDRLPT G L+++HS +EFW+ALLEKAYAK GCYE L GG+TT +D
Sbjct: 128 WVEVVVDDRLPTKDGELLFVHSAEGSEFWSALLEKAYAKINGCYEAL-SGGATTEGFEDF 186
Query: 988 TGGIVQSFALTNQDRYLTFQVLNSAVPRSSLLISSIKLEKEQKRQLRLRNGLITQHAYSV 1047
TGGI + + L L F+++ A+ + SLL SI + + L+ HAYSV
Sbjct: 187 TGGIAEWYELRKPPPNL-FKIIQKALEKGSLLGCSIDITSAADSEAVTYQKLVKGHAYSV 245
Query: 1048 TGLARVRGPLGETPLVRLRNPWARGEWTGPWSE 1080
TG V L+R+RNPW + EWTG W++
Sbjct: 246 TGAEEVESSGSLQKLIRIRNPWGQVEWTGKWND 278
Score = 107 bits (268), Expect = 7e-26
Identities = 37/129 (28%), Positives = 65/129 (50%), Gaps = 1/129 (0%)
Query: 703 QFQKILRSHWKEKLEGIKNNVLTVLILPDGKSLVAKLLVKYPLEVDHAYSVTGLARVRGP 762
+ +K + +K + ++ L + + ++ + L HAYSVTG V
Sbjct: 195 ELRKPPPNLFKIIQKALEKGSLLGCSIDITSAADSEAVTYQKLVKGHAYSVTGAEEVESS 254
Query: 763 LGETPLVRLRNPWARGEWTGPWSERSWEWDGLSERDKELLSIRVSNDGEFWMSFEDFAKH 822
L+R+RNPW + EWTG W++ W+ + + L+ DGEFWMSF DF +H
Sbjct: 255 GSLQKLIRIRNPWGQVEWTGKWNDNCPSWNTVDPEVRANLT-ERQEDGEFWMSFSDFLRH 313
Query: 823 FTHLDLVHV 831
++ L++ ++
Sbjct: 314 YSRLEICNL 322
Score = 44.8 bits (105), Expect = 4e-05
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 834 TGWRSLRYNQNNLGELSWLAEDGGPVTMLEAARISFYGCYENLTHGGSTTRALQDLTGGI 893
T L + + G W +LE A GCYE L GG+TT +D TGGI
Sbjct: 139 TKDGELLFVHSAEGSEFW-------SALLEKAYAKINGCYEAL-SGGATTEGFEDFTGGI 190
Query: 894 VQSFALTNQDRYLTFQVLNSAVPRSSLLISSIKL 927
+ + L L F+++ A+ + SLL SI +
Sbjct: 191 AEWYELRKPPPNL-FKIIQKALEKGSLLGCSIDI 223
>d1qxpa3 b.14.1.1 (A:356-514) Calpain large subunit, middle domain
(domain III) {Rat (Rattus norvegicus), mu-type [TaxId:
10116]}
Length = 159
Score = 112 bits (282), Expect = 2e-29
Identities = 46/155 (29%), Positives = 71/155 (45%), Gaps = 14/155 (9%)
Query: 450 WRAVLARRRWRTGYNAGGGPNFVETTSVNPQFHIQIPRSS--------NNKCHVVVSVTQ 501
W WR G AGG N+ T VNPQF I++ + C ++++ Q
Sbjct: 1 WNTTFYEGTWRRGSTAGGCRNYPATFWVNPQFKIRLEEVDDADDYDSRESGCSFLLALMQ 60
Query: 502 YYETQVDEKQKRTLYAIGFAVY----EISSSMTRLTPQFVAHTKPLDVT-NHSVAREVVT 556
+ + + + R + IGFAVY E++ L F + + REV
Sbjct: 61 KHR-RRERRFGRDMETIGFAVYQVPRELAGQPVHLKRDFFLANASRAQSEHFINLREVSN 119
Query: 557 FFTLPPGDFIVVPQTNVPDCDGKFLLRIFTDEQRD 591
LPPG++IVVP T P+ +G FLLR F++++
Sbjct: 120 RIRLPPGEYIVVPSTFEPNKEGDFLLRFFSEKKAG 154
>d1df0a2 b.14.1.1 (A:356-514) Calpain large subunit, middle domain
(domain III) {Rat (Rattus norvegicus), M-type [TaxId:
10116]}
Length = 159
Score = 111 bits (277), Expect = 9e-29
Identities = 42/155 (27%), Positives = 72/155 (46%), Gaps = 13/155 (8%)
Query: 450 WRAVLARRRWRTGYNAGGGPNFVETTSVNPQFHIQIPRSSNN------KCHVVVSVTQYY 503
W+ WR G AGG N+ T +NPQ+ I++ + C +V + Q +
Sbjct: 1 WKLTKMDGNWRRGSTAGGCRNYPNTFWMNPQYLIKLEEEDEDDEDGERGCTFLVGLIQKH 60
Query: 504 ETQVDEKQKRTLYAIGFAVYEISSSMTRLTPQ------FVAHTKPLDVTNHSVAREVVTF 557
+ K ++ IGF +YE+ +T T F+ REV+
Sbjct: 61 RRR-QRKMGEDMHTIGFGIYEVPEELTGQTNIHLSKNFFLTTRARERSDTFINLREVLNR 119
Query: 558 FTLPPGDFIVVPQTNVPDCDGKFLLRIFTDEQRDF 592
F LPPG++++VP T P +G F +R+F++++ D+
Sbjct: 120 FKLPPGEYVLVPSTFEPHKNGDFCIRVFSEKKADY 154
>d1k94a_ a.39.1.8 (A:) Grancalcin {Human (Homo sapiens) [TaxId: 9606]}
Length = 165
Score = 68.9 bits (168), Expect = 6e-14
Identities = 26/128 (20%), Positives = 53/128 (41%), Gaps = 11/128 (8%)
Query: 1091 EKPSLDMCKSLIMLRDTNISGRLNLLDIPLLMHMLQFWRIAFQKFEKGARSRLSSYSLRP 1150
SL+ C+ +I + D + +G++ L L W+ F ++ + + LR
Sbjct: 35 SPFSLETCRIMIAMLDRDHTGKMGFNAFKELWAALNAWKENFMTVDQDGSGTVEHHELRQ 94
Query: 1151 LLWEAGSTVSNKVLECLVLRFTKNKVLTWENFIMAMVRLHLAHGHPNDYLFLTLFMFKKT 1210
+ G +S + L +V R++KN + +++++ V+L F+K
Sbjct: 95 AIGLMGYRLSPQTLTTIVKRYSKNGRIFFDDYVACCVKLRALTD-----------FFRKR 143
Query: 1211 DVDQIGEV 1218
D Q G
Sbjct: 144 DHLQQGSA 151
>d1qxpa2 a.39.1.8 (A:515-702) Calpain large subunit, C-terminal domain
(domain IV) {Rat (Rattus norvegicus), mu-type [TaxId:
10116]}
Length = 188
Score = 63.6 bits (154), Expect = 5e-12
Identities = 30/141 (21%), Positives = 67/141 (47%), Gaps = 12/141 (8%)
Query: 1079 SEFFLNFSAYLLEKPSLDMCKSLIMLRDTNISGRLNLLDIPLLMHMLQFWRIAFQKFEKG 1138
+ SL+ C+S++ L D + +G+L L++ +L + ++ + F+KF+
Sbjct: 46 NRIISKHKDLRTNGFSLESCRSMVNLMDRDGNGKLGLVEFNILWNRIRNYLTIFRKFDLD 105
Query: 1139 ARSRLSSYSLRPLLWEAGSTVSNKVLECLVLRFT-KNKVLTWENFIMAMVRLHLAHGHPN 1197
+S+Y +R + AG + ++ + +V RF ++ ++NF+ +VRL +
Sbjct: 106 KSGSMSAYEMRMAIEAAGFKLPCQLHQVIVARFADDELIIDFDNFVRCLVRLEILFK--- 162
Query: 1198 DYLFLTLFMFKKTDVDQIGEV 1218
+FK+ D + G +
Sbjct: 163 --------IFKQLDPENTGTI 175
>d1juoa_ a.39.1.8 (A:) Sorcin {Human (Homo sapiens) [TaxId: 9606]}
Length = 172
Score = 57.8 bits (139), Expect = 4e-10
Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 11/128 (8%)
Query: 1091 EKPSLDMCKSLIMLRDTNISGRLNLLDIPLLMHMLQFWRIAFQKFEKGARSRLSSYSLRP 1150
+ +L+ C+ ++ + D ++SG + + L +L WR F F+ + L+
Sbjct: 42 KPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDTDRSGTVDPQELQK 101
Query: 1151 LLWEAGSTVSNKVLECLVLRFTKNKVLTWENFIMAMVRLHLAHGHPNDYLFLTLFMFKKT 1210
L G +S + + + R++ N +T++++I V+L F++
Sbjct: 102 ALTTMGFRLSPQAVNSIAKRYSTNGKITFDDYIACCVKLRALTD-----------SFRRR 150
Query: 1211 DVDQIGEV 1218
D Q G V
Sbjct: 151 DTAQQGVV 158
>d1df0a1 a.39.1.8 (A:515-700) Calpain large subunit, C-terminal domain
(domain IV) {Rat (Rattus norvegicus), M-type [TaxId:
10116]}
Length = 186
Score = 49.8 bits (118), Expect = 3e-07
Identities = 29/141 (20%), Positives = 65/141 (46%), Gaps = 12/141 (8%)
Query: 1079 SEFFLNFSAYLLEKPSLDMCKSLIMLRDTNISGRLNLLDIPLLMHMLQFWRIAFQKFEKG 1138
+ S++ CK ++ + D + SG+L L + +L +Q ++ +++ +
Sbjct: 44 RRVLAKREDIKSDGFSIETCKIMVDMLDEDGSGKLGLKEFYILWTKIQKYQKIYREIDVD 103
Query: 1139 ARSRLSSYSLRPLLWEAGSTVSNKVLECLVLRFTK-NKVLTWENFIMAMVRLHLAHGHPN 1197
++SY +R L EAG + ++ + +V RF ++ ++NF+ +VRL +
Sbjct: 104 RSGTMNSYEMRKALEEAGFKLPCQLHQVIVARFADDELIIDFDNFVRCLVRLEILF---- 159
Query: 1198 DYLFLTLFMFKKTDVDQIGEV 1218
+FK+ D + G +
Sbjct: 160 -------KIFKQLDPENTGTI 173
>d1do5a_ b.1.8.1 (A:) Copper chaperone for superoxide dismutase,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 154
Score = 30.0 bits (67), Expect = 0.93
Identities = 14/75 (18%), Positives = 20/75 (26%), Gaps = 8/75 (10%)
Query: 380 GEWTGPWSERSWEWDGLSERDKELLSIRVSNDGEFWMSFEDFAKHFTHLDL------VHV 433
G P +L ++R DG ED + D+ +
Sbjct: 62 GNHFNPDGASHGGPQDSDRHRGDLGNVRADADGRAIFRMED--EQLKVWDVIGRSLIIDE 119
Query: 434 GPDDWMAEPALQSKQ 448
G DD SK
Sbjct: 120 GEDDLGRGGHPLSKI 134
>d2ezia_ a.4.1.2 (A:) Transposase {Bacteriophage mu [TaxId:
10677]}
Length = 75
Score = 28.2 bits (63), Expect = 1.2
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 45 SRYWTVERPRQTANYHAIKRACREKGI 71
+ Y E+P Y ++ A RE G
Sbjct: 18 ADYLRPEKPAFRKCYERLELAAREHGW 44
>d2prra1 a.152.1.3 (A:5-194) Uncharacterized protein Reut_A2532
{Ralstonia eutropha [TaxId: 106590]}
Length = 190
Score = 30.1 bits (67), Expect = 1.2
Identities = 22/152 (14%), Positives = 45/152 (29%), Gaps = 12/152 (7%)
Query: 756 LARVRGPLGETP---LVRLRNPWARGEWTGPWSERSWEWDGLSERDKELLSIRVS--NDG 810
+ V+ G P L P + + GL++ ++E++ + S N
Sbjct: 23 ILEVQDKAGFVPNVFLTLAHRPDEFRAFFAYHDALMLKDGGLTKGEREMIVVATSAANQC 82
Query: 811 EFWMSF-EDFAKHFTHLDLVHVQMTGWRSLRYNQNNLGELSWLAEDGGPVTMLEAARISF 869
+ + + + LV Q+ + A + ++
Sbjct: 83 LYCVVAHGAILRIYEKKPLVADQVAVNYLKADIPPRQRAMLDFALK----VCKASHEVNE 138
Query: 870 YGCYENLTHGGSTTRALQDLTGGIVQSFALTN 901
+E L G T D+ F L+N
Sbjct: 139 A-DFEALREHGFTDEDAWDIAAITAF-FGLSN 168
Score = 27.8 bits (61), Expect = 7.0
Identities = 14/109 (12%), Positives = 34/109 (31%), Gaps = 6/109 (5%)
Query: 358 LARVRGPLGETP---LVRLRNPWARGEWTGPWSERSWEWDGLSERDKELLSIRVS--NDG 412
+ V+ G P L P + + GL++ ++E++ + S N
Sbjct: 23 ILEVQDKAGFVPNVFLTLAHRPDEFRAFFAYHDALMLKDGGLTKGEREMIVVATSAANQC 82
Query: 413 EFWMSF-EDFAKHFTHLDLVHVGPDDWMAEPALQSKQPWRAVLARRRWR 460
+ + + + LV + + +Q A + +
Sbjct: 83 LYCVVAHGAILRIYEKKPLVADQVAVNYLKADIPPRQRAMLDFALKVCK 131
>d1nlna_ d.3.1.7 (A:) Human adenovirus 2 proteinase, adenain
{Mastadenovirus H2 [TaxId: 10515]}
Length = 203
Score = 30.1 bits (68), Expect = 1.2
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 14/87 (16%)
Query: 156 FDPATNYCGLFRPKFYSEDSLQGRFDFEAGRLGDAWFLAAISSLTLTPKFLDRVIPPEQS 215
++P + C LF P +S+ L+ + FE L S++ +P DR I E+S
Sbjct: 59 WNPRSKTCYLFEPFGFSDQRLKQVYQFEYES------LLRRSAIASSP---DRCITLEKS 109
Query: 216 FD----PATNYCGLFRFRFWH-FGEWK 237
P + CGLF F H F W
Sbjct: 110 TQSVQGPNSAACGLFCCMFLHAFANWP 136
>d1pzsa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 171
Score = 29.7 bits (66), Expect = 1.4
Identities = 17/75 (22%), Positives = 26/75 (34%), Gaps = 11/75 (14%)
Query: 402 ELLSIRVSNDGEFWMSFEDFAKHFTHLDL---------VHVGPDDWMAEPALQSKQPWRA 452
+L S++V DG + FT DL +H G D++ P + Q
Sbjct: 89 DLASLQVRGDGSAMLVTTT--DAFTMDDLLSGAKTAIIIHAGADNFANIPPERYVQVNGT 146
Query: 453 VLARRRWRTGYNAGG 467
T +AG
Sbjct: 147 PGPDETTLTTGDAGK 161
>d2pfxa1 a.152.1.3 (A:1-190) Uncharacterized protein TM1040_2465
{Silicibacter sp. tm1040 [TaxId: 292414]}
Length = 190
Score = 29.4 bits (65), Expect = 1.9
Identities = 17/109 (15%), Positives = 35/109 (32%), Gaps = 6/109 (5%)
Query: 358 LARVRGPLGETP---LVRLRNPWARGEWTGPWSERSWEWDGLSERDKELLSIRVS--NDG 412
+ LG P N +T +++ LS+ ++E++++ VS N
Sbjct: 26 FEICQEKLGMVPNVLKAYAFNVEKLNAFTAMYNDLMLGESQLSKLEREMIAVVVSSINKC 85
Query: 413 EFWMSFEDFAKHFTHLD-LVHVGPDDWMAEPALQSKQPWRAVLARRRWR 460
+ + A D + L ++Q A + R
Sbjct: 86 FYCLVAHGAAVRQLSGDPQLGEMLVMNYRVAPLDARQRVMLDFAAKMTR 134
Score = 29.0 bits (64), Expect = 3.0
Identities = 24/156 (15%), Positives = 47/156 (30%), Gaps = 20/156 (12%)
Query: 756 LARVRGPLGETP---LVRLRNPWARGEWTGPWSERSWEWDGLSERDKELLSIRVS--NDG 810
+ LG P N +T +++ LS+ ++E++++ VS N
Sbjct: 26 FEICQEKLGMVPNVLKAYAFNVEKLNAFTAMYNDLMLGESQLSKLEREMIAVVVSSINKC 85
Query: 811 EFWMSFEDFAKHFTHLDL----VHVQMTGWRSLRYNQNNLGELSW-LAEDGGPVTMLEAA 865
+ + A D + V L Q + + + + +
Sbjct: 86 FYCLVAHGAAVRQLSGDPQLGEMLVMNYRVAPLDARQRVMLDFAAKMTRASAEIEE---- 141
Query: 866 RISFYGCYENLTHGGSTTRALQDLTGGIVQSFALTN 901
E L G R + D+ F +TN
Sbjct: 142 -----ADREVLRSHGFNDRDIWDIANVTGF-FNMTN 171
>d1ci3m1 b.2.6.1 (M:1-169,M:232-249) Cytochrome f, large domain
{Phormidium laminosum [TaxId: 32059]}
Length = 187
Score = 28.9 bits (65), Expect = 2.3
Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 24/82 (29%)
Query: 654 LVKYPLEVDVSQFQKILRSHWKENTVVLPDGKSLVAKLLVKYPLEVDVSQFQKILRSHWK 713
L P E++V Q VLPD V K +VK P + V Q + K
Sbjct: 26 LAAKPAEIEVPQ-------------AVLPDS---VFKAVVKIPYDHSVQQ---VQADGSK 66
Query: 714 EKLEGIKNNVLTVLILPDGKSL 735
L NV VL+LP+G ++
Sbjct: 67 GPL-----NVGAVLMLPEGFTI 83
>d1e2wa1 b.2.6.1 (A:1-168,A:233-251) Cytochrome f, large domain
{Chlamydomonas reinhardtii [TaxId: 3055]}
Length = 187
Score = 28.9 bits (65), Expect = 3.0
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 24/82 (29%)
Query: 654 LVKYPLEVDVSQFQKILRSHWKENTVVLPDGKSLVAKLLVKYPLEVDVSQFQKILRSHWK 713
L + +E++V Q VLPD V + +++ P + V Q +L + K
Sbjct: 26 LAQKAVEIEVPQ-------------AVLPDT---VFEAVIELPYDKQVKQ---VLANGKK 66
Query: 714 EKLEGIKNNVLTVLILPDGKSL 735
L NV VLILP+G L
Sbjct: 67 GDL-----NVGMVLILPEGFEL 83
>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 491
Score = 28.9 bits (64), Expect = 4.0
Identities = 19/146 (13%), Positives = 49/146 (33%), Gaps = 33/146 (22%)
Query: 891 GGIVQSFALTNQDRYLTFQVLNSAVPRSSLLISSIKLWK------EILVDDRLPTFQGR- 943
G ++ +N RY F+ + L + + ++ +L + R
Sbjct: 235 GLLIDLLIKSNVSRYAEFKNIT-----RILAFREGTVEQVPCSRADVFNSKQLTMVEKRM 289
Query: 944 ----LVYL--HSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRALQDLTGGIVQSFAL 997
L + + +P E + A ++++ + LT +L ++ S A+
Sbjct: 290 LMKFLTFCVEYEEHPDE-YRAYEGTTFSEYL-KTQKLT---------PNLQYFVLHSIAM 338
Query: 998 TNQDRYLTFQVLNSAVPRSSLLISSI 1023
T++ T + + + +
Sbjct: 339 TSETTSCTVD----GLKATKKFLQCL 360
>d1j5ya2 d.94.2.1 (A:68-174) Putative transcriptional regulator
TM1602, C-terminal domain {Thermotoga maritima [TaxId:
2336]}
Length = 107
Score = 26.9 bits (60), Expect = 6.3
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 47 YWTVERPRQTANYHAIKRACREKGILYED 75
T+E P + I R ++KG L E+
Sbjct: 80 LHTIEAPDE-ETMERIMRELKKKGFLIEE 107
>d1lucb_ c.1.16.1 (B:) Bacterial luciferase beta chain, LuxB {Vibrio
harveyi [TaxId: 669]}
Length = 320
Score = 28.0 bits (61), Expect = 7.0
Identities = 13/117 (11%), Positives = 26/117 (22%), Gaps = 6/117 (5%)
Query: 98 WMRPHEMCQRPKFYSEDSLQGRFDFE-AGRLGDAWFLAAISSLTLTPKFLDRVIP--PEQ 154
+ + E A +LG S ++
Sbjct: 156 ISVNPHAFTEGGPAQFVNATSKEVVEWAAKLGLPLVFRWDDSNAQRKEYAGLYHEVAQAH 215
Query: 155 SFDPATNYCGLFRPKFYSEDSLQGRFDFEAGRLGDAWFLAAISSLTLTPKFLDRVIP 211
D + L + D R R+ F+ S T + + ++
Sbjct: 216 GVDVSQVRHKLTLLVNQNVDGEAAR---AEARVYLEEFVRESYSNTDFEQKMGELLS 269
>d2nwia1 d.190.1.3 (A:1-160) Hypothetical protein AF1396
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 160
Score = 26.9 bits (59), Expect = 9.2
Identities = 27/135 (20%), Positives = 44/135 (32%), Gaps = 9/135 (6%)
Query: 282 LTHGGSTTRALQDLTGGIVQSFALTNQDRYLTFQVLNSAVPRSSLLISSIKLEKEQKRQL 341
+T GS T ++ +T V+ Q +++ + + LL ++ R +
Sbjct: 9 MTTDGSITAIIEAVTQKKVE-VETLEQ------KIIRADRELAELLEIDEG-DEVNYRVV 60
Query: 342 RLR-NGLITQHAYSVTGLARVRGPLGETPLVRLRNPWARGEWTGPWSERSWEWDGLSERD 400
LR NG I A S T L R+ E + + R W + E D
Sbjct: 61 YLRANGEIYAKAISFTPLKRLENSFREDLMRADIPIGKIMRKHNIEARREIRWSRVEEAD 120
Query: 401 KELLSIRVSNDGEFW 415
L D
Sbjct: 121 LALAKELGIADRRVI 135
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.427
Gapped
Lambda K H
0.267 0.0493 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,730,080
Number of extensions: 230713
Number of successful extensions: 637
Number of sequences better than 10.0: 1
Number of HSP's gapped: 600
Number of HSP's successfully gapped: 40
Length of query: 1218
Length of database: 2,407,596
Length adjustment: 96
Effective length of query: 1122
Effective length of database: 1,089,516
Effective search space: 1222436952
Effective search space used: 1222436952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.7 bits)