Query psy13031
Match_columns 477
No_of_seqs 441 out of 1995
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 17:40:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13031.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13031hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1k8k_D P34, ARP2/3 complex 34 100.0 1.7E-85 5.8E-90 643.7 11.2 239 175-477 55-293 (300)
2 3dwl_D Actin-related protein 2 100.0 4.5E-85 1.5E-89 641.1 13.3 253 174-477 49-310 (317)
3 3dwl_D Actin-related protein 2 100.0 2.4E-35 8.1E-40 289.3 -1.2 138 248-387 154-299 (317)
4 1k8k_D P34, ARP2/3 complex 34 100.0 2.5E-35 8.6E-40 288.9 -2.2 135 251-387 142-281 (300)
5 2lck_A Mitochondrial uncouplin 100.0 2E-32 6.7E-37 274.2 13.9 202 1-223 84-286 (303)
6 1okc_A ADP, ATP carrier protei 100.0 7.8E-32 2.7E-36 268.8 11.6 206 1-220 87-294 (297)
7 1okc_A ADP, ATP carrier protei 100.0 1.9E-30 6.4E-35 258.8 11.4 189 26-223 6-201 (297)
8 2lck_A Mitochondrial uncouplin 100.0 6.9E-30 2.3E-34 255.7 10.8 183 30-222 4-191 (303)
9 3dwl_F Actin-related protein 2 84.8 5.1 0.00017 35.3 9.1 108 335-460 60-167 (168)
10 1k8k_F P20, ARP2/3 complex 20 68.3 13 0.00043 32.9 6.8 107 335-459 60-166 (168)
No 1
>1k8k_D P34, ARP2/3 complex 34 kDa subunit, P34-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1 d.198.2.1 PDB: 1tyq_D* 1u2v_D* 2p9i_D* 2p9k_D* 2p9l_D 2p9n_D* 2p9p_D* 2p9s_D* 2p9u_D* 3dxk_D* 3dxm_D* 3rse_D
Probab=100.00 E-value=1.7e-85 Score=643.71 Aligned_cols=239 Identities=68% Similarity=1.082 Sum_probs=214.5
Q ss_pred hhhhhhHHHHHhhhhccchhhhhhccccccccccCcEEEeehhhhccCCCchHHHHHHHhhhhhhhhccCCCccchhhcc
Q psy13031 175 GKTSISLKFYKELEEHGADELLRREYGSLLSEPEPGYNVSVLINLEDVPSNWEEIVKKIGLSRLQCVRTHQPGRCALKLG 254 (477)
Q Consensus 175 ~~iSi~~~~~~~l~~~G~~~llkG~~~~~l~~p~~g~~~sl~~dL~~Lp~~~e~li~~ls~Lk~~~~aa~~~~~~~l~~~ 254 (477)
..+|++++||++|.++|+.+++++.|+.++..|++||++++.+||++||+++++++.++|+||+|||||
T Consensus 55 i~vSisl~~~~~L~~~Ga~e~Lk~~Yg~~v~~pe~Gy~~tL~idl~~lp~~~~~li~kia~LKrn~laa----------- 123 (300)
T 1k8k_D 55 VMVSISLKFYKELQAHGADELLKRVYGSYLVNPESGYNVSLLYDLENLPASKDSIVHQAGMLKRNCFAS----------- 123 (300)
T ss_dssp EEEEEECTTHHHHHTTTHHHHHHHHHGGGEESCCTTCSEEEEEETTSCCSCHHHHHHHHHTHHHHHHHH-----------
T ss_pred EEEEEEccchHHHhhcCHHHHHHHHccccccCCCCCccEEEEEEHHHCCcCHHHHHHHHHHHHHHHHHH-----------
Confidence 567999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred CCCCcceeeeccccceeeeeeccccCccchhhhhhhhhhhhhccccccCCCccccCCCCCCccccCccccCCCCcceEEE
Q psy13031 255 GDSQENRYVEAKADRVTVVFSTVFRDEDDVIIGKVFMQEFKEGRRASHTAPQVLFSHKEPPLELRNTDARQGDNIGYITF 334 (477)
Q Consensus 255 ~~~~e~~~v~~~~drv~v~f~~~f~~~~d~~~~~~f~q~~~~~~~~~~~ap~~~~~~~~~~~~~r~~~~~~~e~~~~~~f 334 (477)
+|...|+ +|+..++ .+....|+||++ |
T Consensus 124 ------------------pF~~~F~-----------~~~~~~~------------~~~~~~I~YR~~-----E------- 150 (300)
T 1k8k_D 124 ------------------VFEKYFQ-----------FQEEGKE------------GENRAVIHYRDD-----E------- 150 (300)
T ss_dssp ------------------HHHHHHH-----------HHHHTCC------------SCCCEEEEEETT-----E-------
T ss_pred ------------------HHHHHHH-----------HHhcccC------------CCceEEeecCCC-----c-------
Confidence 8888875 3322111 122368999999 9
Q ss_pred eEeeecCCCeEEEEEEeeccCCcchhhHHHHHHHHHHhhhcCCCCCccccCCCCCCccccCcccccCCCeeEEEEEecCC
Q psy13031 335 GKYVEAKADRVTVVFSTVFRDEDDVIIGKVFMQEFKEGRRASHTAPQVLFSHKEPPLELRNTDARQGDNIGYITFVLFPR 414 (477)
Q Consensus 335 ~~f~~~~~~~vtv~~~~~f~d~~d~~~~k~flqe~~~~r~~~~~ap~~~~~~~~~p~~~~~~~~~~~~~~~~~~f~~~~~ 414 (477)
++||+|++|||||||||+|+|++|+++||||||||+|+||++++||||+||+++||+||+|+++..++|+||||||||||
T Consensus 151 ~iyi~~~~DrVTViFst~F~D~~D~v~gkvFlQEfvdaRr~~~~APqvlfs~~~PPlEL~~~~~~~~~n~gyVTFvLfpR 230 (300)
T 1k8k_D 151 TMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRASHTAPQVLFSHREPPLELKDTDAAVGDNIGYITFVLFPR 230 (300)
T ss_dssp EEEEEECSSCEEEEEEEECSSHHHHHHHHHHHHHHHTGGGTCTTSCEEEEEESSCCGGGTTTTCCCSTTEEEEEEEECHH
T ss_pred cEEEEeCCCeEEEEEEEeecCcchhhHHHHHHHHHHHHHhccCCCCceecCCCCCChHHcCCccccCCCeEEEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999877799999999999999
Q ss_pred CCCcchhhhhHHHHhhhhhhhchhhhccchhhhHHHHhhHHHHHHHHhhhCCCCcccccccCC
Q psy13031 415 HTNRVARENTINLIHMFRDYLHYHIKCSKAYIHSRMRAKTSDFLKVLNRARPEVKNTEKKTIT 477 (477)
Q Consensus 415 h~~~~~~~~~~~~~~~f~~y~~yhi~~~~~~~h~~mr~~~~~~~~~l~~~~~~~~~~~~~~~~ 477 (477)
|++++++++|||+||+|||||||||||||||||+|||+||++|||||||||||++++||||||
T Consensus 231 H~~~~~~~~ti~~i~~FR~YlhYHIKcSKaymHsRMR~Rv~~flkvLnRAkpe~~~~ekkT~s 293 (300)
T 1k8k_D 231 HTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARPDAEKKEMKTIT 293 (300)
T ss_dssp HHSTTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC----------
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCcccccceecc
Confidence 999999999999999999999999999999999999999999999999999999999999996
No 2
>3dwl_D Actin-related protein 2/3 complex subunit 2; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.5e-85 Score=641.06 Aligned_cols=253 Identities=43% Similarity=0.727 Sum_probs=208.4
Q ss_pred HhhhhhhHHHHHhhhhccchhhhhhccccccccccCcEEEeehhhhccCCCc---hHHHHHHHhhhhhhhhccCCCccch
Q psy13031 174 LGKTSISLKFYKELEEHGADELLRREYGSLLSEPEPGYNVSVLINLEDVPSN---WEEIVKKIGLSRLQCVRTHQPGRCA 250 (477)
Q Consensus 174 l~~iSi~~~~~~~l~~~G~~~llkG~~~~~l~~p~~g~~~sl~~dL~~Lp~~---~e~li~~ls~Lk~~~~aa~~~~~~~ 250 (477)
.-.+|+.++||++++++|+.+++++.|+.++..|++||++++.+||++||++ +++++.++|+||+|||||
T Consensus 49 ~l~lSi~~~~~~~l~~~Ga~e~Lk~~Yg~~~~~pe~GY~~sL~idL~~lp~~~e~~~~li~~is~LKrn~~aa------- 121 (317)
T 3dwl_D 49 KILISLSMKCYPELVNYGTLDLLKQIYGAYVHEPEMGYNFSILIDLQQLPATDEEKEQLAMSISMLKRNVLAA------- 121 (317)
T ss_dssp CCCEEEECSSHHHHHTTTHHHHHHHHSTTTEECCCTTSSEEECCCTTSCCC-CCSHHHHHHHHHTHHHHHTSH-------
T ss_pred eEEEEEeccchHHHHhcCHHHHHHHHhccccCCCCCCceEEEEEEhhhCCcccchHHHHHHHHHHHHHHHHHh-------
Confidence 3467999999999999999999999999999889999999999999999985 889999999999999999
Q ss_pred hhccCCCCcceeeeccccceeeeeeccccCccchhhhhhhhhhhhhccccccCCCcc---ccCCCCCCccccCccccCCC
Q psy13031 251 LKLGGDSQENRYVEAKADRVTVVFSTVFRDEDDVIIGKVFMQEFKEGRRASHTAPQV---LFSHKEPPLELRNTDARQGD 327 (477)
Q Consensus 251 l~~~~~~~e~~~v~~~~drv~v~f~~~f~~~~d~~~~~~f~q~~~~~~~~~~~ap~~---~~~~~~~~~~~r~~~~~~~e 327 (477)
+|...|++... |+ .++.++.+.+|+. .-+.+...|+||++ |
T Consensus 122 ----------------------pFe~~f~~~~~-------L~--~~~~~~~~~~~~~~~~~~~~~~~~I~YR~~-----E 165 (317)
T 3dwl_D 122 ----------------------PFHRAFTKQAE-------LA--DLARKDPENAPMLDKQATSQELMAIHYRDE-----E 165 (317)
T ss_dssp ----------------------HHHHHHTHHHH-------CC------------CCCCHHHHTTTCEEECCSSS-----C
T ss_pred ----------------------HHHHHHHHHHH-------hh--hhccccccccccccccccCCCeeEEecCCC-----c
Confidence 88888872100 11 1122334445551 11245679999998 9
Q ss_pred CcceEEEeEeeecCCCeEEEEEEeeccCCcchhhHHHHHHHHHHhhhc--CCCCCccccCCCCCCccccCc-ccccCCCe
Q psy13031 328 NIGYITFGKYVEAKADRVTVVFSTVFRDEDDVIIGKVFMQEFKEGRRA--SHTAPQVLFSHKEPPLELRNT-DARQGDNI 404 (477)
Q Consensus 328 ~~~~~~f~~f~~~~~~~vtv~~~~~f~d~~d~~~~k~flqe~~~~r~~--~~~ap~~~~~~~~~p~~~~~~-~~~~~~~~ 404 (477)
+|||+|++|||||||||+|+|++|+++||||||||+|+||+ +++||||||||++||+||+|+ +++.++|+
T Consensus 166 -------~iyI~p~~DrVTVIFst~FkDe~D~v~gkvFLQEFvdaRr~~~~~~APqvlfs~~ePPlEL~~~~~~~~~~n~ 238 (317)
T 3dwl_D 166 -------TIVLWPEHDRVTVVFSTKFREETDRIFGKVFLQEFVDARRRPAIQTAPQVLFSYRDPPLEIRDIQGIQKGDDF 238 (317)
T ss_dssp -------CEEEEECSSEEEEEEEECCSSSSHHHHHHHHHHHHHCCCC-----CCCEEEECSSSCCSCCCSCC-------C
T ss_pred -------eEEEEecCCeEEEEEEEEecCCCceeehHHHHHHHHHHhhccccCCCCcccccCCCCChHHhCCCccccCCCe
Confidence 99999999999999999999999999999999999999997 999999999999999999997 56778999
Q ss_pred eEEEEEecCCCCCcchhhhhHHHHhhhhhhhchhhhccchhhhHHHHhhHHHHHHHHhhhCCCCcccccccCC
Q psy13031 405 GYITFVLFPRHTNRVARENTINLIHMFRDYLHYHIKCSKAYIHSRMRAKTSDFLKVLNRARPEVKNTEKKTIT 477 (477)
Q Consensus 405 ~~~~f~~~~~h~~~~~~~~~~~~~~~f~~y~~yhi~~~~~~~h~~mr~~~~~~~~~l~~~~~~~~~~~~~~~~ 477 (477)
|||||||||||++++++++|||+|++|||||||||||||||||+|||+||++||||||||||| +++||||||
T Consensus 239 gyVTFvLFpRH~~~~~~~~ti~~i~~FR~YlhYHIKcSKaymHsRMR~rv~~~l~vLnrAkpe-~~~ekKT~s 310 (317)
T 3dwl_D 239 GFVTFVLFERHFTPQNREDCISHIQVFRNTLHFHIKASKAYMHQRMRKRVADFQKVLNRAKPD-VELERKTAT 310 (317)
T ss_dssp EEEEEEEEGGGGCTTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCC-CC-------
T ss_pred eEEEEEechHhcCChhHHHHHHHHHHHHHHhhhhheecHHHHHHHHHHHHHHHHHHHHhcCCC-ccccccccC
Confidence 999999999999998899999999999999999999999999999999999999999999999 899999997
No 3
>3dwl_D Actin-related protein 2/3 complex subunit 2; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.4e-35 Score=289.32 Aligned_cols=138 Identities=37% Similarity=0.579 Sum_probs=116.5
Q ss_pred cchhhccCCCCcceeeeccccceeeeeeccccCccchhhhhhhhhhhhhcccc--ccCCCccccCCCCCCccccCc-ccc
Q psy13031 248 RCALKLGGDSQENRYVEAKADRVTVVFSTVFRDEDDVIIGKVFMQEFKEGRRA--SHTAPQVLFSHKEPPLELRNT-DAR 324 (477)
Q Consensus 248 ~~~l~~~~~~~e~~~v~~~~drv~v~f~~~f~~~~d~~~~~~f~q~~~~~~~~--~~~ap~~~~~~~~~~~~~r~~-~~~ 324 (477)
.....++|+++|+|||+|+.|||||||+|+|+|++|+|+||+|||||+|+||+ +++||||+||+++||+|+|+. +++
T Consensus 154 ~~~~~I~YR~~E~iyI~p~~DrVTVIFst~FkDe~D~v~gkvFLQEFvdaRr~~~~~~APqvlfs~~ePPlEL~~~~~~~ 233 (317)
T 3dwl_D 154 QELMAIHYRDEETIVLWPEHDRVTVVFSTKFREETDRIFGKVFLQEFVDARRRPAIQTAPQVLFSYRDPPLEIRDIQGIQ 233 (317)
T ss_dssp TTCEEECCSSSCCEEEEECSSEEEEEEEECCSSSSHHHHHHHHHHHHHCCCC-----CCCEEEECSSSCCSCCCSCC---
T ss_pred CCeeEEecCCCceEEEEecCCeEEEEEEEEecCCCceeehHHHHHHHHHHhhccccCCCCcccccCCCCChHHhCCCccc
Confidence 34667999999999999999999999999999999999999999999999986 999999999999999999995 667
Q ss_pred CCCCcceEEEeEeeecC--CC-eEEEEEEeeccCC--cchhhHHHHHHHHHHhhhcCCCCCccccCCC
Q psy13031 325 QGDNIGYITFGKYVEAK--AD-RVTVVFSTVFRDE--DDVIIGKVFMQEFKEGRRASHTAPQVLFSHK 387 (477)
Q Consensus 325 ~~e~~~~~~f~~f~~~~--~~-~vtv~~~~~f~d~--~d~~~~k~flqe~~~~r~~~~~ap~~~~~~~ 387 (477)
.++|+|||||+||..+- ++ .-||...++|||| +||+|+|+|||. +||+++..-.|||+..+
T Consensus 234 ~~~n~gyVTFvLFpRH~~~~~~~~ti~~i~~FR~YlhYHIKcSKaymHs--RMR~rv~~~l~vLnrAk 299 (317)
T 3dwl_D 234 KGDDFGFVTFVLFERHFTPQNREDCISHIQVFRNTLHFHIKASKAYMHQ--RMRKRVADFQKVLNRAK 299 (317)
T ss_dssp ----CEEEEEEEEGGGGCTTTHHHHHHHHTTHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHSS
T ss_pred cCCCeeEEEEEechHhcCChhHHHHHHHHHHHHHHhhhhheecHHHHHH--HHHHHHHHHHHHHHhcC
Confidence 88999999999997642 22 2477788999998 589999999999 99999999999999964
No 4
>1k8k_D P34, ARP2/3 complex 34 kDa subunit, P34-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1 d.198.2.1 PDB: 1tyq_D* 1u2v_D* 2p9i_D* 2p9k_D* 2p9l_D 2p9n_D* 2p9p_D* 2p9s_D* 2p9u_D* 3dxk_D* 3dxm_D* 3rse_D
Probab=100.00 E-value=2.5e-35 Score=288.88 Aligned_cols=135 Identities=54% Similarity=0.793 Sum_probs=123.6
Q ss_pred hhccCCCCcceeeeccccceeeeeeccccCccchhhhhhhhhhhhhccccccCCCccccCCCCCCccccCccccCCCCcc
Q psy13031 251 LKLGGDSQENRYVEAKADRVTVVFSTVFRDEDDVIIGKVFMQEFKEGRRASHTAPQVLFSHKEPPLELRNTDARQGDNIG 330 (477)
Q Consensus 251 l~~~~~~~e~~~v~~~~drv~v~f~~~f~~~~d~~~~~~f~q~~~~~~~~~~~ap~~~~~~~~~~~~~r~~~~~~~e~~~ 330 (477)
..++|+++|+|||+|+.|||||||+++|+|++|+|+||+|||||+|+||++++||||+||+++||+|+|+.++..++|+|
T Consensus 142 ~~I~YR~~E~iyi~~~~DrVTViFst~F~D~~D~v~gkvFlQEfvdaRr~~~~APqvlfs~~~PPlEL~~~~~~~~~n~g 221 (300)
T 1k8k_D 142 AVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRASHTAPQVLFSHREPPLELKDTDAAVGDNIG 221 (300)
T ss_dssp EEEEEETTEEEEEEECSSCEEEEEEEECSSHHHHHHHHHHHHHHHTGGGTCTTSCEEEEEESSCCGGGTTTTCCCSTTEE
T ss_pred EEeecCCCccEEEEeCCCeEEEEEEEeecCcchhhHHHHHHHHHHHHHhccCCCCceecCCCCCChHHcCCccccCCCeE
Confidence 77899999999999999999999999999999999999999999999999999999999988999999998777789999
Q ss_pred eEEEeEeeec---CCCeEEEEEEeeccCC--cchhhHHHHHHHHHHhhhcCCCCCccccCCC
Q psy13031 331 YITFGKYVEA---KADRVTVVFSTVFRDE--DDVIIGKVFMQEFKEGRRASHTAPQVLFSHK 387 (477)
Q Consensus 331 ~~~f~~f~~~---~~~~vtv~~~~~f~d~--~d~~~~k~flqe~~~~r~~~~~ap~~~~~~~ 387 (477)
||||+||..+ +...-||.+.++|||| +||+|+|+|||. +||+++.+-.|||+..+
T Consensus 222 yVTFvLfpRH~~~~~~~~ti~~i~~FR~YlhYHIKcSKaymHs--RMR~Rv~~flkvLnRAk 281 (300)
T 1k8k_D 222 YITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHT--RMRAKTSDFLKVLNRAR 281 (300)
T ss_dssp EEEEEECHHHHSTTTHHHHHHHHTTHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHTTS
T ss_pred EEEEEeccccCCchHHHHHHHHHHHHHHHHHHHHhccHHHHHH--HHHHHHHHHHHHHHhcC
Confidence 9999999653 2222377777999998 589999999999 99999999999999963
No 5
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=99.98 E-value=2e-32 Score=274.18 Aligned_cols=202 Identities=25% Similarity=0.380 Sum_probs=177.9
Q ss_pred CccchHHHHHhhcCCCCCccccCccchHHHHHHHHHHHHHHHHHhcHHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHHH
Q psy13031 1 MFSEYNTEAHILKPESVDITIADFDGVLFHISNLSAAGATGAFVGTPAEVALIRMTADGRLPPAERRNYKNVFHALYRMT 80 (477)
Q Consensus 1 ~F~~Ye~~k~~l~~~~~~~~~~~~~~~~~~~~aG~~AG~~s~~v~~PLd~VKtrlQ~~~~~~~~~~~~y~~~~~~i~~I~ 80 (477)
+|++||.+|+.+.... +..+....+++|++||+++.++++|+|+||+|||++... .....|+++++++++|+
T Consensus 84 ~f~~ye~~k~~~~~~~------~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~--~~~~~~~~~~~~~~~i~ 155 (303)
T 2lck_A 84 RIGLYDSVKQFYTKGS------EHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA--GGGRRYQSTVEAYKTIA 155 (303)
T ss_dssp TTTHHHHHHHHHSCCC------SSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC--CCSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC------cCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc--CCCCCCCCHHHHHHHHH
Confidence 5899999999986431 125678899999999999999999999999999998532 12357899999999999
Q ss_pred HhhCccccccCchHHHHHHhHHHHHHHHHHHHHHHHHhhcCcCcchhHHHHHHHHHHHHHHHhhcccHHHHHHHhhcccc
Q psy13031 81 SQEGVLTLWRGTIPTMGRAMVVNAAQLASYSQAKQFLLSLSYFEENIFCFFVSSMISAFITTVASMPVDIAKTRIQNMKT 160 (477)
Q Consensus 81 r~eGv~gLYrG~~~~ll~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~ag~~AG~va~~it~PlDvVKtRlQ~q~~ 160 (477)
++||++|||||+.+++++.+|.++++|++||.+|+.+.+......+....+++|++||++++++++|+|+||+|||++..
T Consensus 156 ~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~ 235 (303)
T 2lck_A 156 REEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL 235 (303)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred HhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999887654345567788999999999999999999999999999753
Q ss_pred CCCCCCCCChHHHHhhhhhhHHHHHhhhhccchhhhhhcccccc-ccccCcEEEeehhhhccCC
Q psy13031 161 IDGKPEFKGAFDVLGKTSISLKFYKELEEHGADELLRREYGSLL-SEPEPGYNVSVLINLEDVP 223 (477)
Q Consensus 161 ~~~~~~y~g~~~~l~~iSi~~~~~~~l~~~G~~~llkG~~~~~l-~~p~~g~~~sl~~dL~~Lp 223 (477)
..|+++++|+++| ++++|+.+||+|..++++ ..|..+..|.+|+.++++-
T Consensus 236 ----~~y~~~~~~~~~i---------~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l 286 (303)
T 2lck_A 236 ----GQYHSAGHCALTM---------LRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRAL 286 (303)
T ss_dssp ----SSCCSHHHHHHHH---------HHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred ----cccCCHHHHHHHH---------HHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4699999999999 999999999999999998 6788899999998887654
No 6
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=99.97 E-value=7.8e-32 Score=268.77 Aligned_cols=206 Identities=16% Similarity=0.222 Sum_probs=167.3
Q ss_pred CccchHHHHHhh-cCCCCCccccCccchHHHHHHHHHHHHHHHHHhcHHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHH
Q psy13031 1 MFSEYNTEAHIL-KPESVDITIADFDGVLFHISNLSAAGATGAFVGTPAEVALIRMTADGRLPPAERRNYKNVFHALYRM 79 (477)
Q Consensus 1 ~F~~Ye~~k~~l-~~~~~~~~~~~~~~~~~~~~aG~~AG~~s~~v~~PLd~VKtrlQ~~~~~~~~~~~~y~~~~~~i~~I 79 (477)
+|++||.+|+.+ ...... ..........+++|++||+++.++++|+|+||+|||++.... .....|+++++++++|
T Consensus 87 ~f~~ye~~k~~~~~~~~~~--~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~-~~~~~~~~~~~~~~~i 163 (297)
T 1okc_A 87 NFAFKDKYKQIFLGGVDRH--KQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKG-AAQREFTGLGNCITKI 163 (297)
T ss_dssp HHHHHHHHHHHHHTTCCTT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS-TTTCSCSSHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCcc--cchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCC-CcCcCCCCHHHHHHHH
Confidence 488999999954 322110 001123567899999999999999999999999999985321 1235789999999999
Q ss_pred HHhhCccccccCchHHHHHHhHHHHHHHHHHHHHHHHHhhcCcCcchhHHHHHHHHHHHHHHHhhcccHHHHHHHhhccc
Q psy13031 80 TSQEGVLTLWRGTIPTMGRAMVVNAAQLASYSQAKQFLLSLSYFEENIFCFFVSSMISAFITTVASMPVDIAKTRIQNMK 159 (477)
Q Consensus 80 ~r~eGv~gLYrG~~~~ll~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~ag~~AG~va~~it~PlDvVKtRlQ~q~ 159 (477)
+++||++|||||+.+++++.+|.++++|++||.+|+.+.+. .+.+....+++|++||++++++++|+||||+|||++.
T Consensus 164 ~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~--~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~ 241 (297)
T 1okc_A 164 FKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP--KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQS 241 (297)
T ss_dssp HHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG--GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC--CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999976543 2345677899999999999999999999999999975
Q ss_pred cC-CCCCCCCChHHHHhhhhhhHHHHHhhhhccchhhhhhccccccccccCcEEEeehhhhc
Q psy13031 160 TI-DGKPEFKGAFDVLGKTSISLKFYKELEEHGADELLRREYGSLLSEPEPGYNVSVLINLE 220 (477)
Q Consensus 160 ~~-~~~~~y~g~~~~l~~iSi~~~~~~~l~~~G~~~llkG~~~~~l~~p~~g~~~sl~~dL~ 220 (477)
.. +....|+|+++|+++| ++++|+.+||||..+++++.+..+..|.+|+.++
T Consensus 242 ~~~~~~~~y~~~~~~~~~i---------~~~eG~~glyrG~~~~~~r~~~~~~~f~~ye~~k 294 (297)
T 1okc_A 242 GRKGADIMYTGTVDCWRKI---------AKDEGPKAFFKGAWSNVLRGMGGAFVLVLYDEIK 294 (297)
T ss_dssp TCCGGGCSCSSHHHHHHHH---------HHHHCGGGGGTTHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCCCCCCCCCCHHHHHHHH---------HHHcCcCeEecchHHHHHhhccceeeehHHHHHH
Confidence 32 1235799999999999 9999999999999999986555666666665444
No 7
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=99.96 E-value=1.9e-30 Score=258.76 Aligned_cols=189 Identities=17% Similarity=0.187 Sum_probs=161.7
Q ss_pred chHHHHHHHHHHHHHHHHHhcHHHHHHHHHHcCCCCC-CCcCCCCCCHHHHHHHHHHhhCccccccCchHHHHHHhHHHH
Q psy13031 26 GVLFHISNLSAAGATGAFVGTPAEVALIRMTADGRLP-PAERRNYKNVFHALYRMTSQEGVLTLWRGTIPTMGRAMVVNA 104 (477)
Q Consensus 26 ~~~~~~~aG~~AG~~s~~v~~PLd~VKtrlQ~~~~~~-~~~~~~y~~~~~~i~~I~r~eGv~gLYrG~~~~ll~~~~~~~ 104 (477)
+.+.++++|++||+++.++++|||+||+|||++.... ......|+++++++++|+++||++|||||+.+++++.+|+++
T Consensus 6 ~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 85 (297)
T 1okc_A 6 SFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQA 85 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHH
Confidence 4677899999999999999999999999999985321 112357899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCc-Cc---chhHHHHHHHHHHHHHHHhhcccHHHHHHHhhccccC-CCCCCCCChHHHHhhhhh
Q psy13031 105 AQLASYSQAKQFLLSLSY-FE---ENIFCFFVSSMISAFITTVASMPVDIAKTRIQNMKTI-DGKPEFKGAFDVLGKTSI 179 (477)
Q Consensus 105 i~f~~ye~~k~~l~~~~~-~~---~~~~~~~~ag~~AG~va~~it~PlDvVKtRlQ~q~~~-~~~~~y~g~~~~l~~iSi 179 (477)
++|++||.+|+.+..... .. ......+++|++||++++++++|+|+||+|||++... +....|+++++|+++|
T Consensus 86 ~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i-- 163 (297)
T 1okc_A 86 LNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKI-- 163 (297)
T ss_dssp HHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHH--
T ss_pred HHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHH--
Confidence 999999999996543221 11 2346789999999999999999999999999998532 2245799999999999
Q ss_pred hHHHHHhhhhccchhhhhhcccccc-ccccCcEEEeehhhhccCC
Q psy13031 180 SLKFYKELEEHGADELLRREYGSLL-SEPEPGYNVSVLINLEDVP 223 (477)
Q Consensus 180 ~~~~~~~l~~~G~~~llkG~~~~~l-~~p~~g~~~sl~~dL~~Lp 223 (477)
++++|+.++|+|..++++ ..|..+..|.+|+.+++.-
T Consensus 164 -------~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~ 201 (297)
T 1okc_A 164 -------FKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGML 201 (297)
T ss_dssp -------HHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred -------HHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998 6788899999998887754
No 8
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=99.96 E-value=6.9e-30 Score=255.67 Aligned_cols=183 Identities=17% Similarity=0.278 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHcCCCCCC----CcCCCCCCHHHHHHHHHHhhCccccccCchHHHHHHhHHHHH
Q psy13031 30 HISNLSAAGATGAFVGTPAEVALIRMTADGRLPP----AERRNYKNVFHALYRMTSQEGVLTLWRGTIPTMGRAMVVNAA 105 (477)
Q Consensus 30 ~~~aG~~AG~~s~~v~~PLd~VKtrlQ~~~~~~~----~~~~~y~~~~~~i~~I~r~eGv~gLYrG~~~~ll~~~~~~~i 105 (477)
++++|++||+++.++++|||+||+|||++..... .....|+++++++++|+++||++|||||+.+++++.+|++++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 6899999999999999999999999999864211 113578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCcCcchhHHHHHHHHHHHHHHHhhcccHHHHHHHhhccccCCCCCCCCChHHHHhhhhhhHHHHH
Q psy13031 106 QLASYSQAKQFLLSLSYFEENIFCFFVSSMISAFITTVASMPVDIAKTRIQNMKTIDGKPEFKGAFDVLGKTSISLKFYK 185 (477)
Q Consensus 106 ~f~~ye~~k~~l~~~~~~~~~~~~~~~ag~~AG~va~~it~PlDvVKtRlQ~q~~~~~~~~y~g~~~~l~~iSi~~~~~~ 185 (477)
+|++||.+|+.+.+... ..+....+++|++||++++++++|+|+||+|||++........|.++++|+++|
T Consensus 84 ~f~~ye~~k~~~~~~~~-~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i-------- 154 (303)
T 2lck_A 84 RIGLYDSVKQFYTKGSE-HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTI-------- 154 (303)
T ss_dssp TTTHHHHHHHHHSCCCS-SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHH--------
T ss_pred HHHHHHHHHHHHhcCCc-CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHH--------
Confidence 99999999998865422 356778999999999999999999999999999986433455799999999999
Q ss_pred hhhhccchhhhhhcccccc-ccccCcEEEeehhhhccC
Q psy13031 186 ELEEHGADELLRREYGSLL-SEPEPGYNVSVLINLEDV 222 (477)
Q Consensus 186 ~l~~~G~~~llkG~~~~~l-~~p~~g~~~sl~~dL~~L 222 (477)
++++|+.+||+|..++++ ..|..+..|.+|+.+++.
T Consensus 155 -~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~ 191 (303)
T 2lck_A 155 -AREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDT 191 (303)
T ss_dssp -HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -HHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998 678889999998887764
No 9
>3dwl_F Actin-related protein 2/3 complex subunit 4; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=84.76 E-value=5.1 Score=35.31 Aligned_cols=108 Identities=23% Similarity=0.373 Sum_probs=86.1
Q ss_pred eEeeecCCCeEEEEEEeeccCCcchhhHHHHHHHHHHhhhcCCCCCccccCCCCCCccccCcccccCCCeeEEEEEecCC
Q psy13031 335 GKYVEAKADRVTVVFSTVFRDEDDVIIGKVFMQEFKEGRRASHTAPQVLFSHKEPPLELRNTDARQGDNIGYITFVLFPR 414 (477)
Q Consensus 335 ~~f~~~~~~~vtv~~~~~f~d~~d~~~~k~flqe~~~~r~~~~~ap~~~~~~~~~p~~~~~~~~~~~~~~~~~~f~~~~~ 414 (477)
-.+|+++-+.|-|.+...-.|+.+.++.+-|+. |..+|. .+-++|..- |.+ |.+ |||.+--.
T Consensus 60 ~clIE~SiNSvRvSi~ikqaDeie~iL~~kf~r-Fl~~RA---e~f~ILRrk---Pv~--------GYD---ISFLItn~ 121 (168)
T 3dwl_F 60 QCLIESSVNSVRFSIRIKQVDEIERILVRKFMQ-FLMGRA---ESFFILRRK---PVQ--------GYD---ISFLITNY 121 (168)
T ss_dssp EEEEEEBSSEEEEEEECCCCSSHHHHHHHHHHH-HHGGGT---TTSTTBCSS---CCT--------TCS---EEEEEETT
T ss_pred eEEEEcccceEEEEEEehhhchHHHHHHHHHHH-HHHhcc---cceEEeeeC---CcC--------Ccc---eeeeehHH
Confidence 889999999888888888888888999998886 444443 334555552 221 222 89999999
Q ss_pred CCCcchhhhhHHHHhhhhhhhchhhhccchhhhHHHHhhHHHHHHH
Q psy13031 415 HTNRVARENTINLIHMFRDYLHYHIKCSKAYIHSRMRAKTSDFLKV 460 (477)
Q Consensus 415 h~~~~~~~~~~~~~~~f~~y~~yhi~~~~~~~h~~mr~~~~~~~~~ 460 (477)
|++.--+.+-|+.|.+|-.-+-=-|.--|-.+.+|=|.=.++||+-
T Consensus 122 H~e~m~k~kLvdFIi~FmeevdkeIsemKl~lnaRaR~~A~~fl~~ 167 (168)
T 3dwl_F 122 HTEEMLKHKLVDFIIEFMEEVDAEISEMKLFLNGRARLVAETYLSC 167 (168)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9987667899999999999999999999999999999988898874
No 10
>1k8k_F P20, ARP2/3 complex 20 kDa subunit, P20-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1 PDB: 1tyq_F* 1u2v_F* 2p9i_F* 2p9k_F* 2p9l_F 2p9n_F* 2p9p_F* 2p9s_F* 2p9u_F* 3dxk_F* 3dxm_F* 3rse_F
Probab=68.25 E-value=13 Score=32.92 Aligned_cols=107 Identities=24% Similarity=0.368 Sum_probs=84.5
Q ss_pred eEeeecCCCeEEEEEEeeccCCcchhhHHHHHHHHHHhhhcCCCCCccccCCCCCCccccCcccccCCCeeEEEEEecCC
Q psy13031 335 GKYVEAKADRVTVVFSTVFRDEDDVIIGKVFMQEFKEGRRASHTAPQVLFSHKEPPLELRNTDARQGDNIGYITFVLFPR 414 (477)
Q Consensus 335 ~~f~~~~~~~vtv~~~~~f~d~~d~~~~k~flqe~~~~r~~~~~ap~~~~~~~~~p~~~~~~~~~~~~~~~~~~f~~~~~ 414 (477)
-.+|+++-+.|-|.+..-..|+.+.++.+-|+. |..+|. .+-++|..- |.+ |-+ |||.+--.
T Consensus 60 ~clIE~SiNSvRvSi~ikq~DeiE~iL~~kf~r-Fl~~RA---e~f~ILRrk---Pv~--------GYD---ISFLItn~ 121 (168)
T 1k8k_F 60 KVLIEGSINSVRVSIAVKQADEIEKILCHKFMR-FMMMRA---ENFFILRRK---PVE--------GYD---ISFLITNF 121 (168)
T ss_dssp EEEEEEBSSEEEEEEECCCCSHHHHHHHHHHHH-HHHHTT---TTSTTBCSS---CCT--------TCS---EEEEEEHH
T ss_pred eEEEEcccceEEEEEEEcccChHHHHHHHHHHH-HHHhcc---cceEEeeeC---CcC--------Ccc---chhhhhhh
Confidence 888999999888888778888888888888886 444443 334556552 222 222 78999999
Q ss_pred CCCcchhhhhHHHHhhhhhhhchhhhccchhhhHHHHhhHHHHHH
Q psy13031 415 HTNRVARENTINLIHMFRDYLHYHIKCSKAYIHSRMRAKTSDFLK 459 (477)
Q Consensus 415 h~~~~~~~~~~~~~~~f~~y~~yhi~~~~~~~h~~mr~~~~~~~~ 459 (477)
|++.--+.+-|+.|..|=.-+-=-|.--|-.+.+|=|.=.++|++
T Consensus 122 h~e~m~k~kLidFIi~FmeeiDkeIsemKl~~NaRaR~~A~~fl~ 166 (168)
T 1k8k_F 122 HTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLK 166 (168)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Confidence 998766789999999999999999999999999999988888875
Done!