RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13031
(477 letters)
>3dwl_D Actin-related protein 2/3 complex subunit 2; propellor,
actin-binding, ATP-binding, cytoskeleton, nucleot
binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces
pombe}
Length = 317
Score = 273 bits (698), Expect = 9e-89
Identities = 114/307 (37%), Positives = 162/307 (52%), Gaps = 56/307 (18%)
Query: 178 SISLKFYKELEEHGADELLRREYGSLLSEPEPGYNVSVLINLEDVPSN---WEEIVKKIG 234
S+S+K Y EL +G +LL++ YG+ + EPE GYN S+LI+L+ +P+ E++ I
Sbjct: 53 SLSMKCYPELVNYGTLDLLKQIYGAYVHEPEMGYNFSILIDLQQLPATDEEKEQLAMSIS 112
Query: 235 LSRLQCVRTHQPGRCALKLGGDSQENRYVEAKADRVTVVFSTVFRDEDDVIIGKVF-MQE 293
+ LK V + F + F Q
Sbjct: 113 M---------------LK------------------RNVLAAPFH--------RAFTKQA 131
Query: 294 FKEGRRASHTAPQVLFSHKEPPLELRNTDARQGDNIGYITFGKYVEAKADRVTVVFSTVF 353
+ + EL R + I + + DRVTVVFST F
Sbjct: 132 ELADLARKDPENAPMLDKQATSQELMAIHYRDEETI-------VLWPEHDRVTVVFSTKF 184
Query: 354 RDEDDVIIGKVFMQEFKEGRR--ASHTAPQVLFSHKEPPLELRNTDA-RQGDNIGYITFV 410
R+E D I GKVF+QEF + RR A TAPQVLFS+++PPLE+R+ ++GD+ G++TFV
Sbjct: 185 REETDRIFGKVFLQEFVDARRRPAIQTAPQVLFSYRDPPLEIRDIQGIQKGDDFGFVTFV 244
Query: 411 LFPRHTNRVARENTINLIHMFRDYLHYHIKCSKAYIHSRMRAKTSDFLKVLNRARPEVKN 470
LF RH RE+ I+ I +FR+ LH+HIK SKAY+H RMR + +DF KVLNRA+P+V+
Sbjct: 245 LFERHFTPQNREDCISHIQVFRNTLHFHIKASKAYMHQRMRKRVADFQKVLNRAKPDVE- 303
Query: 471 TEKKTIT 477
E+KT T
Sbjct: 304 LERKTAT 310
Score = 39.3 bits (91), Expect = 0.002
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 13 KPESVDITIADFDGVLFHISN 33
P S+D + DFDGV FHIS
Sbjct: 23 NPSSIDQVVTDFDGVTFHIST 43
>1k8k_D P34, ARP2/3 complex 34 kDa subunit, P34-ARC; beta-propeller,
structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1
d.198.2.1 PDB: 1tyq_D* 1u2v_D* 2p9i_D* 2p9k_D* 2p9l_D
2p9n_D* 2p9p_D* 2p9s_D* 2p9u_D* 3dxk_D* 3dxm_D* 3rse_D
Length = 300
Score = 240 bits (614), Expect = 2e-76
Identities = 120/141 (85%), Positives = 131/141 (92%)
Query: 337 YVEAKADRVTVVFSTVFRDEDDVIIGKVFMQEFKEGRRASHTAPQVLFSHKEPPLELRNT 396
YVE+K DRVTVVFSTVF+D+DDV+IGKVFMQEFKEGRRASHTAPQVLFSH+EPPLEL++T
Sbjct: 153 YVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRASHTAPQVLFSHREPPLELKDT 212
Query: 397 DARQGDNIGYITFVLFPRHTNRVARENTINLIHMFRDYLHYHIKCSKAYIHSRMRAKTSD 456
DA GDNIGYITFVLFPRHTN AR+NTINLIH FRDYLHYHIKCSKAYIH+RMRAKTSD
Sbjct: 213 DAAVGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSD 272
Query: 457 FLKVLNRARPEVKNTEKKTIT 477
FLKVLNRARP+ + E KTIT
Sbjct: 273 FLKVLNRARPDAEKKEMKTIT 293
Score = 190 bits (485), Expect = 2e-57
Identities = 108/192 (56%), Positives = 132/192 (68%), Gaps = 14/192 (7%)
Query: 178 SISLKFYKELEEHGADELLRREYGSLLSEPEPGYNVSVLINLEDVPSNWEEIVKKIGLSR 237
SISLKFYKEL+ HGADELL+R YGS L PE GYNVS+L +LE++P++ + IV + G+ +
Sbjct: 58 SISLKFYKELQAHGADELLKRVYGSYLVNPESGYNVSLLYDLENLPASKDSIVHQAGMLK 117
Query: 238 -----------LQCVRTHQPGRCALKLGGDSQENRYVEAKADRVTVVFSTVFRDEDDVII 286
Q + G + E YVE+K DRVTVVFSTVF+D+DDV+I
Sbjct: 118 RNCFASVFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVI 177
Query: 287 GKVFMQEFKEGRRASHTAPQVLFSHKEPPLELRNTDARQGDNIGYIT---FGKYVEAKAD 343
GKVFMQEFKEGRRASHTAPQVLFSH+EPPLEL++TDA GDNIGYIT F ++ A A
Sbjct: 178 GKVFMQEFKEGRRASHTAPQVLFSHREPPLELKDTDAAVGDNIGYITFVLFPRHTNASAR 237
Query: 344 RVTVVFSTVFRD 355
T+ FRD
Sbjct: 238 DNTINLIHTFRD 249
Score = 38.5 bits (89), Expect = 0.003
Identities = 16/21 (76%), Positives = 20/21 (95%)
Query: 13 KPESVDITIADFDGVLFHISN 33
KPE+V++T ADFDGVL+HISN
Sbjct: 27 KPEAVEVTFADFDGVLYHISN 47
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 204 bits (521), Expect = 2e-62
Identities = 46/154 (29%), Positives = 68/154 (44%), Gaps = 9/154 (5%)
Query: 35 SAAGATGAFVGTPAEVALIRMTADGRLPPAERRNYKNVFHALYRMTSQEGVLTLWRGTIP 94
S GA V P +V +R A R R Y++ A + +EG+ LW+GT P
Sbjct: 112 STTGALAVAVAQPTDVVKVRFQAQARAGG--GRRYQSTVEAYKTIAREEGIRGLWKGTSP 169
Query: 95 TMGRAMVVNAAQLASYSQAKQFLLSLSYFEENIFCFFVSSMISAFITTVASMPVDIAKTR 154
+ R +VN A+L +Y K LL + +++ C F S+ + F TTV + PVD+ KTR
Sbjct: 170 NVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTR 229
Query: 155 IQNMKTIDGKPEFKGAFDVLGKTSIS---LKFYK 185
N ++ A FYK
Sbjct: 230 YMNSAL----GQYHSAGHCALTMLRKEGPRAFYK 259
Score = 80.8 bits (200), Expect = 5e-17
Identities = 26/148 (17%), Positives = 48/148 (32%), Gaps = 11/148 (7%)
Query: 36 AAGATGAFVGTPAEVALIRMTADGRLPPAER----RNYKNVFHALYRMTSQEGVLTLWRG 91
A + P + A +R+ G R Y+ V + M EG +L+ G
Sbjct: 10 TAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNG 69
Query: 92 TIPTMGRAMVVNAAQLASYSQAKQFLLSLSY---FEENIFCFFVSSMISAFITTVASMPV 148
+ + R M + ++ Y KQF S + + ++ + P
Sbjct: 70 LVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQ----PT 125
Query: 149 DIAKTRIQNMKTIDGKPEFKGAFDVLGK 176
D+ K R Q G ++ +
Sbjct: 126 DVVKVRFQAQARAGGGRRYQSTVEAYKT 153
Score = 66.9 bits (164), Expect = 2e-12
Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 6/105 (5%)
Query: 25 DGVLFHISNLSAAGATGAFVGTPAEVALIRMTADGRLPPAERRNYKNVFHALYRMTSQEG 84
D + H ++ AG + +P +V R Y + H M +EG
Sbjct: 200 DDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQ------YHSAGHCALTMLRKEG 253
Query: 85 VLTLWRGTIPTMGRAMVVNAAQLASYSQAKQFLLSLSYFEENIFC 129
++G +P+ R N +Y Q K+ L++ E F
Sbjct: 254 PRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQSREAPFH 298
Score = 33.8 bits (78), Expect = 0.093
Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
Query: 131 FVSSMISAFITTVASMPVDIAKTRIQ------NMKTIDGKPEFKGAFDVLGKT 177
F+ + +A I + + P+D AK R+Q + +++G +
Sbjct: 5 FLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTM 57
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
transporter, nucleotide translocation, membrane protein,
transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
f.42.1.1 PDB: 2c3e_A*
Length = 297
Score = 78.1 bits (193), Expect = 3e-16
Identities = 35/162 (21%), Positives = 65/162 (40%), Gaps = 9/162 (5%)
Query: 25 DGVLFHISNLSAAGATGAFVGT---PAEVALIRM-TADGRLPPAERRNYKNVFHALYRMT 80
D L + + A G A T P E + + + + YK + + R+
Sbjct: 2 DQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIP 61
Query: 81 SQEGVLTLWRGTIPTMGRAMVVNAAQLASYSQAKQFLLSLSYFEENIFCFFVSSMIS--- 137
++G L+ WRG + + R A A + KQ L + + +F ++ S
Sbjct: 62 KEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGA 121
Query: 138 AFITTVASM-PVDIAKTRIQN-MKTIDGKPEFKGAFDVLGKT 177
A T++ + P+D A+TR+ + + EF G + + K
Sbjct: 122 AGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKI 163
Score = 77.7 bits (192), Expect = 4e-16
Identities = 29/144 (20%), Positives = 55/144 (38%), Gaps = 4/144 (2%)
Query: 35 SAAGATGAFVGTPAEVALIRMTADGRLPPAERRNYKNVFHALYRMTSQEGVLTLWRGTIP 94
AAGAT P + A R+ AD A+R + + + + ++ +G+ L++G
Sbjct: 120 GAAGATSLCFVYPLDFARTRLAADVGKGAAQRE-FTGLGNCITKIFKSDGLRGLYQGFNV 178
Query: 95 TMGRAMVVNAAQLASYSQAKQFLLSLSYFEENIFCFFVSSMISAFITTVASMPVDIAKTR 154
++ ++ AA Y AK L +I ++ + + + S P D + R
Sbjct: 179 SVQGIIIYRAAYFGVYDTAKGML--PDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRR 236
Query: 155 IQ-NMKTIDGKPEFKGAFDVLGKT 177
+ + G D K
Sbjct: 237 MMMQSGRKGADIMYTGTVDCWRKI 260
Score = 49.6 bits (119), Expect = 8e-07
Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 2/83 (2%)
Query: 35 SAAGATGAFVGTPAEVALIRMTADGRLPPAERRNYKNVFHALYRMTSQEGVLTLWRGTIP 94
A V P + RM A+ Y ++ EG ++G
Sbjct: 217 QTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIM-YTGTVDCWRKIAKDEGPKAFFKGAWS 275
Query: 95 TMGRAMVVNAAQLASYSQAKQFL 117
+ R + A L Y + K+F+
Sbjct: 276 NVLRG-MGGAFVLVLYDEIKKFV 297
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.5 bits (130), Expect = 5e-08
Identities = 84/587 (14%), Positives = 153/587 (26%), Gaps = 185/587 (31%)
Query: 11 ILKPESVDITIADFDGV-----LFHISNLSAAGATGAFVGTPAEVALIRMTADGRLPPAE 65
IL E +D I D V LF FV
Sbjct: 45 ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE-----------------VL 87
Query: 66 RRNYK---NVFHALYRMTSQEGVL------TLWRGTIPTMGRAMVVNAAQLASYSQAKQF 116
R NYK + R S + L+ V+ Q Y + +Q
Sbjct: 88 RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF--AKYNVSRLQP--YLKLRQA 143
Query: 117 LLSLSYFEENIFCFFVSSMI----SAFITTVAS-------MP----------VDIAKTRI 155
LL L +N+ + ++ + V M + +T +
Sbjct: 144 LLELRP-AKNVL---IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 156 QNMKTIDGKPEFKGAFDVLGKTSISLKFYKELEEHGADELLRREYGSLLSEPEPGYNVSV 215
+ ++ + + + S ++K L H LRR LL Y +
Sbjct: 200 EMLQKLLYQ--IDPNWTSRSDHSSNIK----LRIHSIQAELRR----LLKSKP--YENCL 247
Query: 216 LINLEDVPSNWE-EIVKKIGLSRLQC---VRTHQPGRCALKLGGDSQENRYVEAKADRVT 271
L+ L +V + L C + T L + + ++ + +T
Sbjct: 248 LV-LLNV---QNAKAWNAFNL---SCKILLTTRFKQ-VTDFLSAATTTHISLDHHSMTLT 299
Query: 272 VVFSTVFRDEDDVIIGKVF-MQEFKEGRRASHTAPQVLFSHKEPPLELRNTDARQGDNIG 330
DE ++ K + R T P+ L E +R+ A DN
Sbjct: 300 -------PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE---SIRDGLATW-DNWK 348
Query: 331 YITFGKYVEAKADRVTVVFSTVFRD--------EDDVII-GKV---------------FM 366
++ K + V+ +R I + +
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 367 QEF-------KEGRRASHTAPQVLFS-----------HK------EPPLELRNTD--ARQ 400
+ K+ + ++ + P + H+ P + D
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468
Query: 401 GDN-----IGY--------ITFVLFP-------------RH--TNRVARENTINLIHMFR 432
D IG+ LF RH T A + +N + +
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK 528
Query: 433 DYLHYHIKCSKAYI---HSRMRAKTSDFLKVLNRARPEVKNTEKKTI 476
Y K YI + + L L + + ++ +
Sbjct: 529 FY--------KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL 567
Score = 54.1 bits (129), Expect = 9e-08
Identities = 57/357 (15%), Positives = 105/357 (29%), Gaps = 96/357 (26%)
Query: 146 MPVDIAKTRIQNMKTI-DGKPEFKGAFDV-----LGKTSISLKFYKE-LEEHGADELLRR 198
M + + + Q + + F FD + K+ +S + + A R
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 199 EYGSLLSEPEPGYNVSVLINLEDVPSNWEEIVKKIGLSRLQCVRTHQPGRCALKLGGDSQ 258
+ +LLS+ E V L N++ ++ I QP
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRI---NYKFLMSPIK------TEQRQPSM---------M 108
Query: 259 ENRYVEAKADRVTVVFSTVFRDEDDVIIGKVFMQEFKEGRRASHTAPQVLFSHKEPPLEL 318
Y+E + DR ++ D Q F + V S +P L+L
Sbjct: 109 TRMYIEQR-DR-------LYND----------NQVFAKY--------NV--SRLQPYLKL 140
Query: 319 RN--TDARQGDNI---GYITFGKYVEA----KADRVTVVFS-TVF------RDEDDVIIG 362
R + R N+ G + GK A + +V +F + + ++
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 363 KV------FMQEFKEGRRASHTAPQVLFSHKEPPLELRNTDARQGDNIGYITFVLFPRHT 416
+ + S + S + ELR + + VL +
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA---ELRRLLKSKPYENCLL--VL--LN- 252
Query: 417 NRVARENTINLIHMFRDYLHYHIKCSKAYIHSRMRAKTSDFLKVLNRARPEVKNTEK 473
V N F + + C K + +R + T DFL + +
Sbjct: 253 --VQNAKAWN---AF-N-----LSC-KILLTTRFKQVT-DFLSAATTTHISLDHHSM 296
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.3 bits (99), Expect = 4e-04
Identities = 46/291 (15%), Positives = 87/291 (29%), Gaps = 74/291 (25%)
Query: 190 HGADELLRREYGSLLSEPEPGYNVSVLINLEDVPSNWEEIVKK-IGL--SRLQCVRTHQP 246
L+ ++ +L EP G+ +D P+ E+V K +G S ++ + Q
Sbjct: 27 FFIASQLQEQFNKILPEPTEGF------AADDEPTTPAELVGKFLGYVSSLVEPSKVGQF 80
Query: 247 GRCALKLGGDSQENRYVEAKADRVTVVFSTVFRDEDDVIIGKVFMQEFKEGRRASHTAPQ 306
+ L L EN Y+E D + + ++ ++ K ++ + A A +
Sbjct: 81 DQV-LNLCLTEFENCYLEGN-DIHALAAKLLQENDTTLVKTKELIKNYIT---ARIMAKR 135
Query: 307 VLFSHKEPPLELRNT---DAR-------QGDNIGYI--------TFGKYVEAKADRVTVV 348
L R +A+ QG+ Y T+ V
Sbjct: 136 PFDKKSNSAL-FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAET 194
Query: 349 FSTVFRDEDDVIIGKVFMQEFKEGRRASHTAPQVLFSHKEPPLE-LRNTDARQGDNIGYI 407
S + R D + +F+ LE L N + Y+
Sbjct: 195 LSELIRTTLDA---------------------EKVFTQGLNILEWLENPSNTPDKD--YL 231
Query: 408 T--FVLFPRHTNRVARENTINLIHMFRDYLHYHIKCSKA-YIHSRMRAKTS 455
+ P I +I + HY + + +R+
Sbjct: 232 LSIPISCP----------LIGVIQL----AHYVVTAKLLGFTPGELRSYLK 268
Score = 38.1 bits (88), Expect = 0.006
Identities = 41/239 (17%), Positives = 81/239 (33%), Gaps = 70/239 (29%)
Query: 47 PAEVALIRMTADGRLPPAERRNY---------------KNVFHAL------YRMTSQEGV 85
P + + G+ R NY + +F + Y S++G+
Sbjct: 1669 PVNLTIHFGGEKGK---RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGL 1725
Query: 86 LTLWRGTIPTMGRAMVVNAAQLASYS--QAKQFLLSLSYF------EENIFCFFVSSMIS 137
L+ + T P A+ + A++ ++K + + + F E +
Sbjct: 1726 LSATQFTQP----ALT--LMEKAAFEDLKSKGLIPADATFAGHSLGE-----------YA 1768
Query: 138 AFITTVASMP----VDIAKTR---IQNMKTIDGKPEFKGAFDVLGKTSISLKFYKELEEH 190
A + M V++ R +Q D + ++ F +E ++
Sbjct: 1769 ALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQY 1828
Query: 191 GADELLRREYGSLLSEPEP-GYNVS----V----LINLEDVPSNWEEI-VKKIGLSRLQ 239
+ + +R G L+ E YNV V L L+ V + I ++KI + LQ
Sbjct: 1829 VVERVGKRT-GWLV---EIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQ 1883
Score = 37.3 bits (86), Expect = 0.013
Identities = 78/511 (15%), Positives = 138/511 (27%), Gaps = 188/511 (36%)
Query: 2 F-SEY--NTEAHILK---PESVDITIADFDGVLFHISN-LSAAGATGAFVGTPAEVALIR 54
F + Y + H L + D T+ + I N ++A + AL R
Sbjct: 91 FENCYLEGNDIHALAAKLLQENDTTLVKTKEL---IKNYITARIMAKRPFDKKSNSALFR 147
Query: 55 MTADGRLPPAERRNYKNVFHALYRMTSQEGVLTLWRGTIPTMGRAMVVNAAQLASYSQAK 114
+G A++ G G Q
Sbjct: 148 AVGEGNAQ----------LVAIF------G------G--------------------QG- 164
Query: 115 QFLLSLSYFEE--NIFCFFVSSMISAFITTVASMPVDIAKTRIQNMKTIDGKPEFKGAFD 172
+ YFEE +++ + ++ I A ++ +T T+D + F +
Sbjct: 165 ---NTDDYFEELRDLYQTY-HVLVGDLIKFSAETLSELIRT------TLDAEKVFTQGLN 214
Query: 173 V---------------LGKTSISLK---------FYKELEEHGAD--ELLRREYGSLLSE 206
+ L IS + + G EL G +
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG--ATG 272
Query: 207 PEPGYNVSVLINLEDVPSNWEEIVKK-------IGLSRLQCVRTHQ--PGRCAL--KLGG 255
G +V I D ++ V+K IG+ R ++ P +L +
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGV------RCYEAYP-NTSLPPSILE 325
Query: 256 DSQEN----------------RYVEAKADRVTVVFSTVFRDEDDVIIGKVFMQEFKEGRR 299
DS EN V+ ++ ++ V I V G +
Sbjct: 326 DSLENNEGVPSPMLSISNLTQEQVQDYVNK----TNSHLPAGKQVEISLV------NGAK 375
Query: 300 ----ASHTAPQVLFSHKEPPLELRNTDARQGDNIGYITFGKYVEAKADRVTVVFSTVFRD 355
+ PQ L+ L LR A G + I F + R + FS F
Sbjct: 376 NLVVSGP--PQSLYGLN---LTLRKAKAPSGLDQSRIPFSE-------R-KLKFSNRF-- 420
Query: 356 EDDVIIGKVFMQEFKEGRRASHTAPQVLF--SHKEPPLELRNTDARQGD---NIGYITFV 410
+ +P F P +L N D + + N I
Sbjct: 421 --LPV-----------------ASP---FHSHLLVPASDLINKDLVKNNVSFNAKDIQIP 458
Query: 411 LFPRHTNRVARENTINLIH-----MFRDYLH 436
++ R + ++ + R +
Sbjct: 459 VYDTFDGSDLRVLSGSISERIVDCIIRLPVK 489
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 2.0
Identities = 11/52 (21%), Positives = 14/52 (26%), Gaps = 24/52 (46%)
Query: 164 KPEFKGAFDVLGKTSISLKFYKELEEHGADELLRREYGSLLSEPEPGYNVSV 215
K K K SLK Y AD+ S P ++
Sbjct: 19 KQALK-------KLQASLKLY-------ADD----------SAPALAIKATM 46
Score = 28.4 bits (62), Expect = 3.1
Identities = 7/42 (16%), Positives = 15/42 (35%), Gaps = 15/42 (35%)
Query: 65 ERRNYKNVFHALYRMTSQEGVLTLWR-GTIPTMGRAMVVNAA 105
E++ K + + L L+ + P A+ + A
Sbjct: 18 EKQALKKL----------QASLKLYADDSAP----ALAIKAT 45
>4e29_A Chimeric WZZB chain length determinant protein; regulation of LPS
O-antigen chain length, inner membran membrane protein;
1.60A {Shigella flexneri} PDB: 4e2c_A 4e2h_A 3b8p_A
Length = 248
Score = 28.1 bits (62), Expect = 6.1
Identities = 7/65 (10%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Query: 104 AAQLASYSQAKQFLLSLSYFEEN-IFCFFVSSMISAFITTVASMPVDIAKTRIQNMKTID 162
Q+A Y+ A + + + + + + SAF ++ ++ ++
Sbjct: 22 VGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEPEKLTIEPSVK 81
Query: 163 GKPEF 167
+
Sbjct: 82 NQQLP 86
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 27.5 bits (61), Expect = 8.7
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 197 RREYGSLLSEPEPGYNVSVLI--NLEDVPS--NWEEIVKKIGLSRLQCVRTHQPGRCALK 252
R E +L+E E + +L+ N +D+P+ N EI K+GL L+ + CA
Sbjct: 252 REELMRMLAEDE-LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATS 310
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.391
Gapped
Lambda K H
0.267 0.0539 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,409,934
Number of extensions: 465630
Number of successful extensions: 986
Number of sequences better than 10.0: 1
Number of HSP's gapped: 968
Number of HSP's successfully gapped: 32
Length of query: 477
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 380
Effective length of database: 3,993,456
Effective search space: 1517513280
Effective search space used: 1517513280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.9 bits)