RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13031
(477 letters)
>d1k8kd2 d.198.2.1 (D:121-284) ARPC2 (34 kDa subunit) {Cow (Bos
taurus) [TaxId: 9913]}
Length = 164
Score = 240 bits (614), Expect = 1e-78
Identities = 115/131 (87%), Positives = 125/131 (95%)
Query: 337 YVEAKADRVTVVFSTVFRDEDDVIIGKVFMQEFKEGRRASHTAPQVLFSHKEPPLELRNT 396
YVE+K DRVTVVFSTVF+D+DDV+IGKVFMQEFKEGRRASHTAPQVLFSH+EPPLEL++T
Sbjct: 33 YVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRASHTAPQVLFSHREPPLELKDT 92
Query: 397 DARQGDNIGYITFVLFPRHTNRVARENTINLIHMFRDYLHYHIKCSKAYIHSRMRAKTSD 456
DA GDNIGYITFVLFPRHTN AR+NTINLIH FRDYLHYHIKCSKAYIH+RMRAKTSD
Sbjct: 93 DAAVGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSD 152
Query: 457 FLKVLNRARPE 467
FLKVLNRARP+
Sbjct: 153 FLKVLNRARPD 163
Score = 130 bits (328), Expect = 1e-36
Identities = 70/101 (69%), Positives = 80/101 (79%), Gaps = 3/101 (2%)
Query: 258 QENRYVEAKADRVTVVFSTVFRDEDDVIIGKVFMQEFKEGRRASHTAPQVLFSHKEPPLE 317
E YVE+K DRVTVVFSTVF+D+DDV+IGKVFMQEFKEGRRASHTAPQVLFSH+EPPLE
Sbjct: 29 DETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRASHTAPQVLFSHREPPLE 88
Query: 318 LRNTDARQGDNIGYIT---FGKYVEAKADRVTVVFSTVFRD 355
L++TDA GDNIGYIT F ++ A A T+ FRD
Sbjct: 89 LKDTDAAVGDNIGYITFVLFPRHTNASARDNTINLIHTFRD 129
>d1k8kd1 d.198.2.1 (D:1-120) ARPC2 (34 kDa subunit) {Cow (Bos
taurus) [TaxId: 9913]}
Length = 120
Score = 95.2 bits (237), Expect = 3e-24
Identities = 37/63 (58%), Positives = 49/63 (77%)
Query: 178 SISLKFYKELEEHGADELLRREYGSLLSEPEPGYNVSVLINLEDVPSNWEEIVKKIGLSR 237
SISLKFYKEL+ HGADELL+R YGS L PE GYNVS+L +LE++P++ + IV + G+ +
Sbjct: 58 SISLKFYKELQAHGADELLKRVYGSYLVNPESGYNVSLLYDLENLPASKDSIVHQAGMLK 117
Query: 238 LQC 240
C
Sbjct: 118 RNC 120
Score = 44.3 bits (105), Expect = 2e-06
Identities = 16/22 (72%), Positives = 20/22 (90%)
Query: 12 LKPESVDITIADFDGVLFHISN 33
KPE+V++T ADFDGVL+HISN
Sbjct: 26 NKPEAVEVTFADFDGVLYHISN 47
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
heart isoform t1 [TaxId: 9913]}
Length = 292
Score = 46.6 bits (109), Expect = 3e-06
Identities = 25/129 (19%), Positives = 46/129 (35%), Gaps = 5/129 (3%)
Query: 35 SAAGATGAFVGTPAEVALIRM-TADGRLPPAERRNYKNVFHALYRMTSQEGVLTLWRGTI 93
A A P E + + + + YK + + R+ ++G L+ WRG +
Sbjct: 14 GVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNL 73
Query: 94 PTMGRAMVVNAAQLASYSQAKQFLLSLSYFEENIFCFFV----SSMISAFITTVASMPVD 149
+ R A A + KQ L + + +F S + + P+D
Sbjct: 74 ANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLD 133
Query: 150 IAKTRIQNM 158
A+TR+
Sbjct: 134 FARTRLAAD 142
Score = 45.9 bits (107), Expect = 4e-06
Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 2/60 (3%)
Query: 53 IRMTADGRLPPAERRNYKNVFHALYRMTSQEGVLTLWRGTIPTMGRAMVVNAAQLASYSQ 112
RM A+ Y ++ EG ++G + R + A L Y +
Sbjct: 234 RRMMMQSGRKGADIM-YTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDE 291
Score = 45.1 bits (105), Expect = 9e-06
Identities = 28/142 (19%), Positives = 54/142 (38%), Gaps = 4/142 (2%)
Query: 37 AGATGAFVGTPAEVALIRMTADGRLPPAERRNYKNVFHALYRMTSQEGVLTLWRGTIPTM 96
AGAT P + A R+ AD A +R + + + + ++ +G+ L++G ++
Sbjct: 121 AGATSLCFVYPLDFARTRLAADVG-KGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSV 179
Query: 97 GRAMVVNAAQLASYSQAKQFLLSLSYFEENIFCFFVSSMISAFITTVASMPVDIAKTRIQ 156
++ AA Y AK +I ++ + + + S P D + R+
Sbjct: 180 QGIIIYRAAYFGVYDTAKGM--LPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMM 237
Query: 157 NMKTIDGKP-EFKGAFDVLGKT 177
G + G D K
Sbjct: 238 MQSGRKGADIMYTGTVDCWRKI 259
Score = 37.4 bits (85), Expect = 0.002
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 131 FVSSMISAFITTVASMPVDIAKTRIQN---MKTIDGKPEFKGAFDVLGKT 177
F++ ++A I+ A P++ K +Q K I + ++KG D + +
Sbjct: 10 FLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRI 59
>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 287
Score = 27.0 bits (59), Expect = 4.9
Identities = 22/150 (14%), Positives = 51/150 (34%), Gaps = 12/150 (8%)
Query: 317 ELRNTDARQGDNIGYITFGKYVEAKADRVTVVFSTVFRDEDDVIIGKVFMQEFKEGRRAS 376
E+ TD +G +G+ E + + V ++D + + F++E +
Sbjct: 13 EMERTDITMKHKLGGGQYGEVYEGV-WKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIK 71
Query: 377 HTAPQVL----FSHKEPPLELRNTDARQGDNIGYITFVLFPRHTNRVARENTINLIHMF- 431
H P ++ +EPP + G+ + Y+ + V +
Sbjct: 72 H--PNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAME 129
Query: 432 ----RDYLHYHIKCSKAYIHSRMRAKTSDF 457
++++H + + K +DF
Sbjct: 130 YLEKKNFIHRDLAARNCLVGENHLVKVADF 159
>d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli
[TaxId: 562]}
Length = 295
Score = 26.6 bits (57), Expect = 6.4
Identities = 16/147 (10%), Positives = 32/147 (21%), Gaps = 9/147 (6%)
Query: 23 DFDGVLFHISNLSAAGATGAFV-GTPAEVALIRMTADGRLPPAERRNYKNVFHALYRMTS 81
D + + G G +V G+ E + +ER + +
Sbjct: 21 DKASLRRLVQFNIQQGIDGLYVGGSTGEAFV--------QSLSEREQVLEIVAEEAKGKI 72
Query: 82 QEGVLTLWRGTIPTMGRAMVVNAAQLASYSQAKQFLLSLSYFEENIFCFFVSSMISAFIT 141
+ T + A + S F S+ E +
Sbjct: 73 KLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPM 132
Query: 142 TVASMPVDIAKTRIQNMKTIDGKPEFK 168
V ++P +
Sbjct: 133 VVYNIPARSGVKLTLDQINTLVTLPGV 159
>d1k0ra4 d.202.1.1 (A:-4-99) Transcription factor NusA, N-terminal
domain {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 104
Score = 25.5 bits (56), Expect = 6.5
Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 259 ENRYVEAKADRVT--VVFSTVFRDEDDVIIGKVFMQEFKEGRRASHTAPQVLF 309
+ DR T V DE +I + GR A+ TA QV+
Sbjct: 45 HQTDARIEIDRKTGVVRVIARETDEAGNLISEWDDTPEGFGRIAATTARQVML 97
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.135 0.391
Gapped
Lambda K H
0.267 0.0680 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,757,384
Number of extensions: 84293
Number of successful extensions: 227
Number of sequences better than 10.0: 1
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 17
Length of query: 477
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 388
Effective length of database: 1,185,626
Effective search space: 460022888
Effective search space used: 460022888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.1 bits)