Query psy13032
Match_columns 190
No_of_seqs 182 out of 1299
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 17:41:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13032.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13032hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0391|consensus 100.0 1.5E-35 3.3E-40 270.3 9.4 165 1-183 684-853 (1958)
2 KOG0385|consensus 100.0 6.6E-35 1.4E-39 258.7 11.8 126 1-144 236-361 (971)
3 KOG0388|consensus 100.0 3.7E-35 8E-40 258.6 8.6 173 1-185 636-832 (1185)
4 KOG0392|consensus 100.0 1.5E-33 3.2E-38 258.8 10.6 162 1-183 1050-1221(1549)
5 KOG0386|consensus 100.0 4.8E-31 1E-35 239.2 10.0 165 1-184 463-636 (1157)
6 KOG0389|consensus 100.0 1.7E-30 3.6E-35 231.3 9.0 168 1-185 467-663 (941)
7 KOG0387|consensus 100.0 1.8E-30 3.8E-35 231.3 8.9 172 1-184 274-479 (923)
8 PLN03142 Probable chromatin-re 100.0 2.3E-29 5E-34 235.1 12.6 166 1-184 238-420 (1033)
9 KOG0384|consensus 100.0 1.1E-28 2.3E-33 227.3 9.9 171 1-184 439-622 (1373)
10 PF00176 SNF2_N: SNF2 family N 99.9 1.4E-24 3E-29 178.8 10.2 165 2-187 78-266 (299)
11 KOG4439|consensus 99.9 8.1E-25 1.8E-29 193.3 5.8 156 8-186 411-595 (901)
12 KOG1015|consensus 99.9 4.2E-23 9.1E-28 186.9 8.6 163 1-183 747-961 (1567)
13 KOG0390|consensus 99.9 6.8E-22 1.5E-26 179.0 13.3 166 1-184 317-516 (776)
14 KOG1002|consensus 99.8 7.6E-22 1.6E-26 169.6 5.5 106 2-130 251-374 (791)
15 COG0553 HepA Superfamily II DN 99.8 6.8E-21 1.5E-25 177.1 10.9 133 1-149 409-551 (866)
16 KOG1016|consensus 99.8 1.3E-18 2.8E-23 155.7 11.3 155 8-182 349-573 (1387)
17 KOG0383|consensus 99.8 1.6E-19 3.4E-24 162.4 4.0 172 1-184 364-562 (696)
18 KOG1001|consensus 99.8 2.2E-18 4.8E-23 156.1 9.7 153 7-186 216-391 (674)
19 PRK04914 ATP-dependent helicas 99.7 1.1E-17 2.4E-22 156.5 9.8 96 37-141 246-346 (956)
20 KOG0298|consensus 99.7 3.4E-18 7.4E-23 159.1 6.2 125 1-147 439-586 (1394)
21 KOG1000|consensus 99.7 1.3E-17 2.7E-22 143.6 5.0 137 36-185 284-427 (689)
22 TIGR00603 rad25 DNA repair hel 99.1 1.4E-10 3.1E-15 106.2 7.2 63 38-114 343-415 (732)
23 cd00046 DEXDc DEAD-like helica 98.6 6.9E-08 1.5E-12 69.4 6.2 83 7-110 57-144 (144)
24 PF04851 ResIII: Type III rest 98.5 4.6E-07 9.9E-12 68.9 7.2 62 36-111 109-183 (184)
25 PRK13766 Hef nuclease; Provisi 98.4 1E-06 2.3E-11 82.2 9.2 100 7-129 86-190 (773)
26 COG1061 SSL2 DNA or RNA helica 98.3 6.5E-07 1.4E-11 78.7 5.5 74 39-126 123-199 (442)
27 smart00487 DEXDc DEAD-like hel 98.3 1.7E-06 3.6E-11 65.8 5.3 65 39-113 106-173 (201)
28 PHA02558 uvsW UvsW helicase; P 98.2 3.6E-06 7.8E-11 75.1 6.7 63 37-114 200-263 (501)
29 TIGR00643 recG ATP-dependent D 98.0 1.9E-05 4.2E-10 72.3 7.3 90 3-116 306-402 (630)
30 PF00270 DEAD: DEAD/DEAH box h 97.9 2.4E-05 5.3E-10 58.8 6.2 93 6-117 71-168 (169)
31 PRK10917 ATP-dependent DNA hel 97.8 3.2E-05 7E-10 71.5 6.4 89 3-115 332-424 (681)
32 TIGR00348 hsdR type I site-spe 97.7 9.7E-05 2.1E-09 68.2 6.7 62 38-113 338-405 (667)
33 COG1200 RecG RecG-like helicas 97.7 7.6E-05 1.6E-09 67.8 5.7 91 2-116 332-427 (677)
34 cd00268 DEADc DEAD-box helicas 97.6 0.00021 4.6E-09 55.6 7.0 86 7-111 97-185 (203)
35 TIGR00614 recQ_fam ATP-depende 97.6 0.0002 4.4E-09 63.4 7.1 88 36-128 99-190 (470)
36 COG1111 MPH1 ERCC4-like helica 97.6 0.00018 4E-09 63.2 6.5 99 6-127 85-188 (542)
37 KOG1123|consensus 97.6 3.8E-05 8.1E-10 67.7 2.2 77 36-130 388-477 (776)
38 PRK11448 hsdR type I restricti 97.5 0.00022 4.7E-09 69.2 6.7 78 37-114 510-598 (1123)
39 PRK10689 transcription-repair 97.4 0.0003 6.5E-09 68.4 6.2 84 8-116 678-764 (1147)
40 PRK11192 ATP-dependent RNA hel 97.4 0.00075 1.6E-08 59.0 7.9 94 7-119 101-197 (434)
41 TIGR00580 mfd transcription-re 97.4 0.00053 1.1E-08 65.4 7.2 85 7-116 528-615 (926)
42 PRK11776 ATP-dependent RNA hel 97.2 0.0011 2.3E-08 58.5 6.9 87 6-111 100-189 (460)
43 PRK13767 ATP-dependent helicas 97.2 0.0022 4.7E-08 61.1 9.0 93 6-118 123-223 (876)
44 TIGR01389 recQ ATP-dependent D 97.2 0.0026 5.5E-08 58.0 9.2 87 36-127 101-189 (591)
45 PF13872 AAA_34: P-loop contai 97.1 0.00085 1.8E-08 55.9 5.1 97 37-140 135-252 (303)
46 COG1205 Distinct helicase fami 97.1 0.0012 2.6E-08 62.5 6.8 88 7-118 145-248 (851)
47 PRK10590 ATP-dependent RNA hel 97.1 0.0018 3.9E-08 57.1 7.3 65 37-111 124-191 (456)
48 COG1204 Superfamily II helicas 97.1 0.00088 1.9E-08 62.7 5.5 101 7-130 103-205 (766)
49 COG4096 HsdR Type I site-speci 97.1 0.00022 4.8E-09 66.0 1.4 61 37-112 255-322 (875)
50 PRK11057 ATP-dependent DNA hel 97.1 0.0016 3.5E-08 59.6 7.0 87 36-127 113-201 (607)
51 PF07652 Flavi_DEAD: Flaviviru 97.0 0.00091 2E-08 50.1 4.2 63 36-111 70-137 (148)
52 PRK09751 putative ATP-dependen 97.0 0.0022 4.9E-08 63.6 8.0 92 6-119 76-176 (1490)
53 KOG0354|consensus 97.0 0.0015 3.4E-08 60.2 6.4 81 37-128 153-238 (746)
54 PRK00254 ski2-like helicase; P 97.0 0.0034 7.3E-08 58.6 8.7 88 7-120 95-187 (720)
55 PRK11634 ATP-dependent RNA hel 97.0 0.0028 6.1E-08 58.2 7.6 87 5-110 101-190 (629)
56 PRK02362 ski2-like helicase; P 96.9 0.0029 6.3E-08 59.1 7.5 86 7-119 94-188 (737)
57 PLN00206 DEAD-box ATP-dependen 96.9 0.0033 7.1E-08 56.5 7.2 65 37-111 245-311 (518)
58 PRK04837 ATP-dependent RNA hel 96.8 0.0035 7.6E-08 54.6 6.7 86 7-111 111-201 (423)
59 PRK01297 ATP-dependent RNA hel 96.8 0.0043 9.3E-08 55.0 7.3 87 7-111 190-281 (475)
60 PTZ00424 helicase 45; Provisio 96.8 0.0045 9.7E-08 53.3 7.2 64 38-111 146-212 (401)
61 PRK04537 ATP-dependent RNA hel 96.8 0.0055 1.2E-07 55.7 8.1 65 37-111 133-203 (572)
62 PTZ00110 helicase; Provisional 96.7 0.0044 9.5E-08 56.0 7.0 63 38-110 253-318 (545)
63 TIGR03817 DECH_helic helicase/ 96.5 0.0091 2E-07 56.0 7.8 91 6-118 107-210 (742)
64 COG1201 Lhr Lhr-like helicases 96.5 0.0034 7.3E-08 58.9 4.9 96 7-128 101-206 (814)
65 PRK01172 ski2-like helicase; P 96.4 0.011 2.4E-07 54.7 7.4 71 37-118 110-185 (674)
66 COG1197 Mfd Transcription-repa 96.4 0.0092 2E-07 57.5 6.7 76 16-116 682-758 (1139)
67 TIGR00595 priA primosomal prot 96.2 0.025 5.4E-07 50.8 8.4 89 8-112 51-141 (505)
68 PLN03137 ATP-dependent DNA hel 96.1 0.014 3E-07 56.6 6.6 83 36-127 550-643 (1195)
69 PRK09401 reverse gyrase; Revie 96.1 0.022 4.7E-07 56.0 7.9 38 37-74 178-215 (1176)
70 PF06733 DEAD_2: DEAD_2; Inte 96.1 0.0046 1E-07 47.4 2.7 40 35-74 116-159 (174)
71 COG0610 Type I site-specific r 96.1 0.006 1.3E-07 58.7 3.8 66 38-117 350-420 (962)
72 smart00489 DEXDc3 DEAD-like he 96.0 0.0066 1.4E-07 50.5 3.6 39 36-74 209-250 (289)
73 smart00488 DEXDc2 DEAD-like he 96.0 0.0066 1.4E-07 50.5 3.6 39 36-74 209-250 (289)
74 TIGR03158 cas3_cyano CRISPR-as 96.0 0.018 3.9E-07 49.3 6.1 71 37-112 112-193 (357)
75 TIGR01587 cas3_core CRISPR-ass 95.9 0.015 3.3E-07 49.2 5.5 64 37-111 93-166 (358)
76 PRK11747 dinG ATP-dependent DN 95.7 0.008 1.7E-07 55.9 3.2 39 36-74 217-260 (697)
77 TIGR03117 cas_csf4 CRISPR-asso 95.5 0.011 2.3E-07 54.4 3.1 39 36-74 180-220 (636)
78 TIGR01407 dinG_rel DnaQ family 95.3 0.013 2.7E-07 55.8 2.9 39 36-74 414-454 (850)
79 TIGR01054 rgy reverse gyrase. 95.0 0.042 9.2E-07 54.0 5.5 37 37-74 177-213 (1171)
80 PRK08074 bifunctional ATP-depe 94.9 0.022 4.9E-07 54.7 3.3 39 36-74 429-469 (928)
81 COG0514 RecQ Superfamily II DN 94.9 0.049 1.1E-06 49.6 5.2 90 36-130 105-196 (590)
82 PRK05580 primosome assembly pr 94.8 0.13 2.8E-06 47.8 8.0 55 7-73 215-271 (679)
83 TIGR02621 cas3_GSU0051 CRISPR- 94.6 0.1 2.3E-06 49.4 6.9 84 7-111 113-216 (844)
84 PRK07246 bifunctional ATP-depe 94.6 0.031 6.7E-07 53.0 3.4 39 36-74 411-450 (820)
85 PF13086 AAA_11: AAA domain; P 94.4 0.057 1.2E-06 42.1 4.1 60 37-114 169-230 (236)
86 PF13401 AAA_22: AAA domain; P 94.2 0.083 1.8E-06 37.7 4.2 38 60-110 87-125 (131)
87 COG4889 Predicted helicase [Ge 94.0 0.018 3.8E-07 54.5 0.4 70 35-111 277-351 (1518)
88 PRK10536 hypothetical protein; 93.9 0.12 2.6E-06 42.4 5.0 57 40-115 161-217 (262)
89 KOG0952|consensus 93.6 0.11 2.3E-06 49.9 4.8 114 2-141 186-311 (1230)
90 PRK14701 reverse gyrase; Provi 93.6 0.13 2.8E-06 52.2 5.6 61 7-74 152-214 (1638)
91 PF02562 PhoH: PhoH-like prote 93.4 0.1 2.3E-06 41.3 3.9 43 60-116 119-161 (205)
92 COG1110 Reverse gyrase [DNA re 93.2 0.19 4E-06 48.4 5.7 57 8-72 157-215 (1187)
93 TIGR00604 rad3 DNA repair heli 93.1 0.092 2E-06 49.0 3.6 39 36-74 193-234 (705)
94 KOG0330|consensus 92.6 0.27 5.9E-06 42.6 5.3 92 7-118 157-252 (476)
95 KOG0343|consensus 92.2 0.56 1.2E-05 42.5 6.9 81 37-129 189-273 (758)
96 PHA02653 RNA helicase NPH-II; 91.7 0.31 6.8E-06 45.3 5.1 63 38-118 274-338 (675)
97 KOG0352|consensus 91.3 0.42 9E-06 42.1 5.1 83 37-128 112-204 (641)
98 KOG0350|consensus 91.3 0.19 4.2E-06 44.8 3.1 70 1-74 235-309 (620)
99 COG1199 DinG Rad3-related DNA 90.7 0.25 5.3E-06 45.6 3.4 38 37-74 193-234 (654)
100 PRK09694 helicase Cas3; Provis 90.3 0.67 1.4E-05 44.5 6.0 72 38-120 410-490 (878)
101 COG0513 SrmB Superfamily II DN 90.1 0.77 1.7E-05 41.4 6.0 93 7-119 128-223 (513)
102 KOG0331|consensus 89.8 0.73 1.6E-05 41.5 5.5 64 37-110 214-281 (519)
103 PF09848 DUF2075: Uncharacteri 89.6 0.47 1E-05 40.4 4.1 16 59-74 82-97 (352)
104 PRK11131 ATP-dependent RNA hel 89.3 0.86 1.9E-05 45.3 6.0 62 37-111 162-229 (1294)
105 KOG0345|consensus 88.2 0.87 1.9E-05 40.5 4.7 62 5-74 106-171 (567)
106 TIGR01970 DEAH_box_HrpB ATP-de 87.9 0.97 2.1E-05 43.1 5.3 70 38-116 90-162 (819)
107 KOG1132|consensus 87.5 0.41 8.9E-06 45.3 2.5 38 37-74 221-261 (945)
108 KOG1803|consensus 87.5 0.59 1.3E-05 42.6 3.3 62 33-113 333-394 (649)
109 PF13604 AAA_30: AAA domain; P 87.3 0.97 2.1E-05 35.3 4.2 38 61-112 94-132 (196)
110 KOG4284|consensus 86.5 1.4 3.1E-05 40.8 5.2 98 7-126 122-222 (980)
111 TIGR03714 secA2 accessory Sec 86.3 3.4 7.4E-05 39.1 7.8 38 37-74 163-209 (762)
112 KOG1133|consensus 86.2 0.58 1.3E-05 43.3 2.7 39 36-74 321-362 (821)
113 KOG0947|consensus 86.0 0.65 1.4E-05 44.6 2.9 61 37-110 378-444 (1248)
114 PLN03025 replication factor C 85.8 2.1 4.6E-05 35.9 5.7 60 60-130 99-158 (319)
115 TIGR01967 DEAH_box_HrpA ATP-de 84.7 1.5 3.2E-05 43.7 4.8 63 38-112 156-223 (1283)
116 TIGR01447 recD exodeoxyribonuc 84.6 1.2 2.6E-05 40.8 4.0 41 59-113 258-298 (586)
117 KOG0351|consensus 84.6 1.9 4.1E-05 41.7 5.3 89 35-132 353-452 (941)
118 COG1875 NYN ribonuclease and A 84.5 0.97 2.1E-05 39.1 3.0 39 60-112 351-389 (436)
119 PRK11664 ATP-dependent RNA hel 84.5 1.7 3.6E-05 41.5 5.0 70 38-116 93-165 (812)
120 PF13173 AAA_14: AAA domain 84.1 1.6 3.4E-05 31.4 3.7 40 60-112 61-100 (128)
121 KOG0338|consensus 84.0 1.9 4E-05 38.9 4.7 98 2-120 276-377 (691)
122 COG4098 comFA Superfamily II D 84.0 5.3 0.00012 34.4 7.2 54 41-111 189-244 (441)
123 COG4646 DNA methylase [Transcr 82.1 0.77 1.7E-05 40.7 1.5 32 100-131 473-504 (637)
124 PRK07003 DNA polymerase III su 82.0 1.5 3.2E-05 41.5 3.5 44 59-113 118-161 (830)
125 COG1202 Superfamily II helicas 82.0 3.7 8E-05 37.7 5.8 78 35-123 312-393 (830)
126 COG4581 Superfamily II RNA hel 81.8 2.4 5.3E-05 41.2 4.9 69 37-120 204-278 (1041)
127 PRK04296 thymidine kinase; Pro 81.7 3.4 7.4E-05 32.0 5.0 15 59-73 77-91 (190)
128 TIGR01448 recD_rel helicase, p 81.6 2.1 4.6E-05 40.2 4.4 41 59-113 415-455 (720)
129 PRK10875 recD exonuclease V su 81.5 1.8 3.9E-05 40.0 3.8 41 59-113 264-304 (615)
130 KOG1131|consensus 80.8 1.5 3.1E-05 39.7 2.8 38 37-74 198-239 (755)
131 COG1702 PhoH Phosphate starvat 79.6 1.3 2.7E-05 37.9 2.0 43 60-116 243-285 (348)
132 KOG0337|consensus 78.8 2.4 5.3E-05 37.3 3.5 65 37-111 139-206 (529)
133 KOG0948|consensus 78.2 1.6 3.6E-05 41.0 2.4 37 37-75 210-250 (1041)
134 PRK09112 DNA polymerase III su 77.8 4.6 0.0001 34.6 4.9 54 46-110 123-181 (351)
135 PF05621 TniB: Bacterial TniB 77.0 3.1 6.8E-05 34.9 3.6 49 54-110 139-189 (302)
136 KOG0347|consensus 76.9 11 0.00023 34.6 7.0 86 6-110 290-386 (731)
137 PRK15483 type III restriction- 76.7 2.7 6E-05 40.7 3.5 90 38-145 162-277 (986)
138 KOG0339|consensus 76.7 13 0.00029 33.7 7.5 85 7-110 324-411 (731)
139 PRK13104 secA preprotein trans 76.3 3.7 8E-05 39.5 4.2 57 7-74 151-216 (896)
140 PF13177 DNA_pol3_delta2: DNA 76.1 3.8 8.3E-05 30.9 3.6 41 60-111 102-142 (162)
141 TIGR00376 DNA helicase, putati 75.8 3 6.4E-05 38.7 3.5 42 54-112 355-396 (637)
142 KOG0340|consensus 75.6 7.7 0.00017 33.5 5.5 91 7-118 103-201 (442)
143 TIGR00708 cobA cob(I)alamin ad 75.6 6.7 0.00015 30.2 4.8 60 55-125 92-151 (173)
144 PRK07414 cob(I)yrinic acid a,c 75.5 6.8 0.00015 30.4 4.9 58 56-124 111-168 (178)
145 KOG0336|consensus 75.4 6.8 0.00015 34.6 5.3 70 37-116 342-413 (629)
146 PRK09200 preprotein translocas 75.1 5.7 0.00012 37.8 5.1 55 7-74 147-213 (790)
147 PRK07994 DNA polymerase III su 74.4 3.5 7.7E-05 38.3 3.5 43 59-112 118-160 (647)
148 TIGR00963 secA preprotein tran 74.3 3.8 8.1E-05 38.7 3.7 57 7-74 125-190 (745)
149 PRK12323 DNA polymerase III su 74.1 8.3 0.00018 36.1 5.8 56 46-112 106-165 (700)
150 PRK05986 cob(I)alamin adenolsy 74.0 6.4 0.00014 30.9 4.4 60 55-125 110-169 (191)
151 PHA00673 acetyltransferase dom 73.9 7.6 0.00017 29.4 4.7 44 61-116 88-134 (154)
152 PRK14949 DNA polymerase III su 73.7 3.7 8E-05 39.6 3.5 42 59-111 118-159 (944)
153 PRK14956 DNA polymerase III su 73.6 3.7 8E-05 36.8 3.4 16 59-74 120-135 (484)
154 COG2109 BtuR ATP:corrinoid ade 73.2 11 0.00023 29.7 5.4 63 55-125 117-179 (198)
155 cd00561 CobA_CobO_BtuR ATP:cor 73.0 6.4 0.00014 29.9 4.1 56 55-118 90-145 (159)
156 KOG0335|consensus 73.0 3.9 8.5E-05 36.5 3.3 39 36-74 200-240 (482)
157 PRK14958 DNA polymerase III su 72.9 7.7 0.00017 35.0 5.3 46 59-115 118-163 (509)
158 COG2256 MGS1 ATPase related to 72.8 6.7 0.00015 34.4 4.6 65 8-72 48-116 (436)
159 KOG1513|consensus 72.6 12 0.00026 35.8 6.4 87 37-132 367-472 (1300)
160 PF07517 SecA_DEAD: SecA DEAD- 72.2 14 0.00031 30.4 6.3 36 38-73 166-210 (266)
161 PRK08451 DNA polymerase III su 72.1 4.6 9.9E-05 36.7 3.6 40 60-110 117-156 (535)
162 KOG0950|consensus 71.2 13 0.00028 36.0 6.4 83 37-130 314-406 (1008)
163 PRK04132 replication factor C 71.1 6 0.00013 37.9 4.3 50 60-120 630-679 (846)
164 TIGR03015 pepcterm_ATPase puta 70.9 5.1 0.00011 32.2 3.4 39 61-111 124-166 (269)
165 KOG0326|consensus 70.7 5.9 0.00013 33.9 3.7 85 7-110 181-268 (459)
166 KOG0329|consensus 70.6 6.3 0.00014 32.7 3.8 63 1-74 133-199 (387)
167 PRK14961 DNA polymerase III su 69.9 5.8 0.00013 34.0 3.7 39 60-109 119-157 (363)
168 KOG0328|consensus 69.9 12 0.00025 31.6 5.2 78 38-129 145-225 (400)
169 KOG0353|consensus 69.8 19 0.00041 31.6 6.6 84 31-123 179-273 (695)
170 PRK14960 DNA polymerase III su 68.7 10 0.00022 35.5 5.1 42 60-112 118-159 (702)
171 PRK14952 DNA polymerase III su 68.5 6.6 0.00014 36.1 3.9 41 59-110 117-157 (584)
172 KOG0925|consensus 68.1 4.1 8.9E-05 36.7 2.4 54 60-125 159-216 (699)
173 PRK07764 DNA polymerase III su 67.4 5.9 0.00013 37.9 3.5 40 59-109 119-158 (824)
174 PF02572 CobA_CobO_BtuR: ATP:c 67.3 8.5 0.00018 29.6 3.7 58 57-125 93-150 (172)
175 PRK14951 DNA polymerase III su 67.2 5.7 0.00012 36.8 3.2 15 60-74 124-138 (618)
176 KOG0342|consensus 67.2 21 0.00046 32.1 6.5 72 38-120 205-280 (543)
177 TIGR02562 cas3_yersinia CRISPR 66.5 15 0.00032 36.2 5.9 75 37-122 561-646 (1110)
178 PRK12898 secA preprotein trans 65.6 31 0.00067 32.3 7.6 16 58-73 240-255 (656)
179 TIGR00596 rad1 DNA repair prot 64.0 15 0.00033 35.2 5.4 92 38-141 7-105 (814)
180 TIGR02881 spore_V_K stage V sp 63.5 12 0.00025 30.4 4.1 54 56-112 101-154 (261)
181 PRK14969 DNA polymerase III su 63.2 9.4 0.0002 34.6 3.8 40 60-110 119-158 (527)
182 TIGR00678 holB DNA polymerase 62.7 9.4 0.0002 29.1 3.3 52 46-108 78-133 (188)
183 PRK08084 DNA replication initi 62.2 48 0.001 26.4 7.4 89 9-109 46-139 (235)
184 PRK13103 secA preprotein trans 62.1 10 0.00022 36.7 3.8 55 7-74 151-216 (913)
185 PRK14955 DNA polymerase III su 61.9 62 0.0014 28.0 8.6 40 60-110 127-166 (397)
186 PHA02544 44 clamp loader, smal 61.2 19 0.00041 29.8 5.1 43 60-112 100-142 (316)
187 PRK05563 DNA polymerase III su 60.7 11 0.00023 34.5 3.7 40 59-109 118-157 (559)
188 PF00308 Bac_DnaA: Bacterial d 60.7 57 0.0012 25.8 7.5 90 9-108 36-137 (219)
189 PF01443 Viral_helicase1: Vira 60.5 12 0.00025 29.3 3.6 42 60-116 62-103 (234)
190 PF10923 DUF2791: P-loop Domai 59.9 16 0.00035 32.2 4.5 59 45-110 222-290 (416)
191 PRK14965 DNA polymerase III su 59.8 11 0.00023 34.6 3.6 40 59-109 118-157 (576)
192 KOG0949|consensus 59.8 29 0.00062 34.2 6.3 75 36-123 603-682 (1330)
193 PRK14964 DNA polymerase III su 59.7 11 0.00024 33.9 3.5 41 60-111 116-156 (491)
194 KOG0922|consensus 59.7 8.1 0.00018 35.8 2.7 50 60-121 163-216 (674)
195 cd00009 AAA The AAA+ (ATPases 59.3 14 0.00031 25.6 3.6 43 60-113 84-132 (151)
196 PRK08691 DNA polymerase III su 59.1 27 0.00059 32.9 6.1 50 60-120 119-168 (709)
197 PHA02533 17 large terminase pr 58.2 20 0.00044 32.6 5.1 19 56-74 165-183 (534)
198 COG1203 CRISPR-associated heli 58.0 5.3 0.00012 37.6 1.3 54 57-120 335-390 (733)
199 TIGR00643 recG ATP-dependent D 57.8 55 0.0012 30.3 7.9 83 5-112 480-568 (630)
200 PF05127 Helicase_RecD: Helica 57.3 11 0.00023 29.2 2.7 53 60-145 90-142 (177)
201 PRK12899 secA preprotein trans 57.0 13 0.00029 36.0 3.7 36 38-73 183-228 (970)
202 PRK14959 DNA polymerase III su 56.3 13 0.00028 34.5 3.5 39 60-109 119-157 (624)
203 KOG0346|consensus 56.2 16 0.00035 32.6 3.8 40 37-76 144-186 (569)
204 KOG0989|consensus 56.1 12 0.00026 31.8 2.9 38 60-108 129-166 (346)
205 PRK08058 DNA polymerase III su 56.0 23 0.0005 29.9 4.8 52 47-109 93-148 (329)
206 PRK07940 DNA polymerase III su 55.9 14 0.0003 32.3 3.4 39 60-109 117-155 (394)
207 KOG0926|consensus 55.5 20 0.00043 34.5 4.5 77 40-117 351-431 (1172)
208 PRK12723 flagellar biosynthesi 55.4 1.2E+02 0.0026 26.5 9.1 77 60-145 254-343 (388)
209 PRK05707 DNA polymerase III su 54.5 16 0.00035 31.0 3.6 52 46-108 88-143 (328)
210 PRK12402 replication factor C 54.3 18 0.00039 30.0 3.9 39 60-109 125-163 (337)
211 PRK06964 DNA polymerase III su 54.3 16 0.00034 31.3 3.5 40 59-109 131-170 (342)
212 PRK00440 rfc replication facto 54.1 28 0.00061 28.5 5.0 41 60-111 102-142 (319)
213 COG2812 DnaX DNA polymerase II 53.8 14 0.00031 33.4 3.3 16 59-74 118-133 (515)
214 PRK06871 DNA polymerase III su 53.7 15 0.00032 31.2 3.2 40 59-109 106-145 (325)
215 CHL00181 cbbX CbbX; Provisiona 53.5 1.1E+02 0.0025 25.2 8.5 17 56-72 118-134 (287)
216 PRK06620 hypothetical protein; 53.4 34 0.00074 27.0 5.1 49 61-123 86-137 (214)
217 PRK13107 preprotein translocas 53.3 37 0.0008 33.0 6.0 61 38-123 171-240 (908)
218 PRK09111 DNA polymerase III su 52.7 16 0.00034 33.8 3.4 42 60-112 132-173 (598)
219 COG3587 Restriction endonuclea 52.6 15 0.00032 35.3 3.2 63 35-110 157-242 (985)
220 PRK14957 DNA polymerase III su 51.9 18 0.00038 33.1 3.6 39 60-109 119-157 (546)
221 PRK05642 DNA replication initi 51.1 85 0.0019 25.0 7.2 88 10-109 47-138 (234)
222 PRK14948 DNA polymerase III su 51.0 19 0.00041 33.4 3.7 40 59-109 120-159 (620)
223 COG1197 Mfd Transcription-repa 50.8 32 0.0007 34.1 5.3 85 2-114 824-915 (1139)
224 PRK14953 DNA polymerase III su 50.6 26 0.00057 31.4 4.4 39 60-109 119-157 (486)
225 PRK07471 DNA polymerase III su 50.1 20 0.00043 30.9 3.5 41 59-110 140-181 (365)
226 PRK14962 DNA polymerase III su 49.7 16 0.00035 32.7 2.9 14 60-73 117-130 (472)
227 PRK14873 primosome assembly pr 49.7 46 0.001 31.2 6.0 56 6-71 213-268 (665)
228 TIGR03420 DnaA_homol_Hda DnaA 49.1 24 0.00052 27.4 3.6 76 39-123 67-149 (226)
229 PRK10689 transcription-repair 48.9 1.2E+02 0.0026 30.4 9.0 59 3-72 831-891 (1147)
230 PRK14088 dnaA chromosomal repl 48.7 1.8E+02 0.0039 25.7 9.3 64 10-74 133-208 (440)
231 KOG0990|consensus 48.7 17 0.00037 31.1 2.7 43 59-112 130-172 (360)
232 PRK14954 DNA polymerase III su 48.7 36 0.00078 31.6 5.1 53 46-109 109-165 (620)
233 PF03354 Terminase_1: Phage Te 48.4 29 0.00063 30.9 4.4 21 54-74 117-137 (477)
234 COG1200 RecG RecG-like helicas 47.8 56 0.0012 30.6 6.1 80 3-112 503-593 (677)
235 PRK07133 DNA polymerase III su 46.7 23 0.0005 33.5 3.6 40 59-109 117-156 (725)
236 TIGR00580 mfd transcription-re 46.4 74 0.0016 31.1 7.0 59 3-72 682-742 (926)
237 PRK06090 DNA polymerase III su 46.4 40 0.00086 28.6 4.7 40 59-109 107-146 (319)
238 PRK06645 DNA polymerase III su 45.9 24 0.00053 31.9 3.5 15 60-74 128-142 (507)
239 KOG0991|consensus 45.8 18 0.0004 29.7 2.4 18 57-74 110-127 (333)
240 PRK14087 dnaA chromosomal repl 45.1 99 0.0021 27.5 7.2 40 60-108 206-246 (450)
241 PF12846 AAA_10: AAA-like doma 44.5 17 0.00037 29.2 2.2 16 59-74 219-234 (304)
242 PRK13826 Dtr system oriT relax 43.8 21 0.00046 35.4 3.0 43 61-117 469-512 (1102)
243 PF05707 Zot: Zonular occluden 43.8 13 0.00029 28.6 1.4 14 61-74 80-93 (193)
244 PRK08727 hypothetical protein; 43.6 1.3E+02 0.0028 23.9 7.1 62 39-109 70-134 (233)
245 PRK07413 hypothetical protein; 42.8 56 0.0012 28.5 5.1 60 55-122 120-179 (382)
246 PRK07413 hypothetical protein; 42.7 46 0.001 29.0 4.6 61 55-125 300-360 (382)
247 PRK14963 DNA polymerase III su 42.6 33 0.00072 31.0 3.8 14 60-73 116-129 (504)
248 TIGR02397 dnaX_nterm DNA polym 42.6 32 0.00068 28.8 3.6 38 60-108 117-154 (355)
249 PHA03368 DNA packaging termina 42.5 34 0.00073 32.2 3.9 20 55-74 347-366 (738)
250 PRK06647 DNA polymerase III su 41.5 30 0.00066 31.7 3.5 16 59-74 118-133 (563)
251 PRK07399 DNA polymerase III su 41.3 33 0.00072 28.9 3.5 38 59-108 123-160 (314)
252 smart00382 AAA ATPases associa 40.9 1.1E+02 0.0024 20.5 5.8 17 58-74 76-92 (148)
253 TIGR02768 TraA_Ti Ti-type conj 40.8 27 0.00059 33.1 3.1 40 60-113 439-479 (744)
254 PRK10917 ATP-dependent DNA hel 40.6 1.7E+02 0.0037 27.4 8.3 57 5-72 503-561 (681)
255 PRK12904 preprotein translocas 40.5 37 0.00079 32.7 3.9 55 7-74 150-215 (830)
256 PF00271 Helicase_C: Helicase 40.3 56 0.0012 20.6 3.8 53 6-69 6-60 (78)
257 KOG1805|consensus 39.7 29 0.00063 33.9 3.1 41 55-112 791-831 (1100)
258 PRK14950 DNA polymerase III su 39.5 34 0.00073 31.4 3.5 39 60-109 120-158 (585)
259 PRK14971 DNA polymerase III su 39.4 76 0.0016 29.4 5.7 39 60-109 121-159 (614)
260 KOG0924|consensus 39.1 17 0.00036 34.4 1.4 57 60-129 468-530 (1042)
261 PRK07276 DNA polymerase III su 38.6 36 0.00078 28.4 3.2 52 46-108 86-141 (290)
262 PRK13342 recombination factor 38.1 34 0.00075 29.8 3.2 14 60-73 92-105 (413)
263 PRK05896 DNA polymerase III su 37.8 38 0.00083 31.4 3.5 39 60-109 119-157 (605)
264 PRK08769 DNA polymerase III su 37.8 38 0.00082 28.7 3.3 39 60-109 113-151 (319)
265 PRK13889 conjugal transfer rel 37.4 34 0.00073 33.6 3.2 43 60-116 433-476 (988)
266 COG1373 Predicted ATPase (AAA+ 37.1 48 0.001 28.9 3.9 14 62-75 96-109 (398)
267 COG1112 Superfamily I DNA and 37.0 34 0.00074 31.9 3.2 60 41-119 471-530 (767)
268 PRK11054 helD DNA helicase IV; 36.8 79 0.0017 29.8 5.5 42 60-113 430-471 (684)
269 PRK05564 DNA polymerase III su 36.6 41 0.00088 28.0 3.3 53 45-108 74-130 (313)
270 PRK09087 hypothetical protein; 36.2 1.1E+02 0.0024 24.2 5.6 49 62-122 89-142 (226)
271 KOG0348|consensus 35.5 41 0.00088 30.9 3.2 67 38-111 262-342 (708)
272 PF05586 Ant_C: Anthrax recept 35.1 29 0.00064 23.7 1.7 16 108-123 53-68 (95)
273 PRK13341 recombination factor 34.7 43 0.00093 31.8 3.4 14 60-73 109-122 (725)
274 PRK12422 chromosomal replicati 34.6 1.8E+02 0.0038 25.9 7.1 89 10-110 144-244 (445)
275 PF00580 UvrD-helicase: UvrD/R 33.9 56 0.0012 26.4 3.7 39 59-112 255-294 (315)
276 TIGR02880 cbbX_cfxQ probable R 33.6 62 0.0013 26.7 3.9 53 56-110 117-169 (284)
277 PRK07993 DNA polymerase III su 33.6 46 0.001 28.3 3.2 39 59-108 107-145 (334)
278 PRK12901 secA preprotein trans 33.5 76 0.0017 31.5 4.8 79 7-122 238-328 (1112)
279 PRK06305 DNA polymerase III su 33.3 47 0.001 29.5 3.3 39 59-108 120-158 (451)
280 PF00004 AAA: ATPase family as 32.4 1.1E+02 0.0023 21.0 4.6 15 61-75 59-73 (132)
281 PRK14970 DNA polymerase III su 32.1 54 0.0012 27.9 3.4 15 60-74 108-122 (367)
282 PRK14086 dnaA chromosomal repl 31.8 2E+02 0.0042 26.9 7.0 91 10-110 317-419 (617)
283 COG1618 Predicted nucleotide k 31.8 86 0.0019 24.3 4.0 54 36-103 76-132 (179)
284 TIGR00362 DnaA chromosomal rep 31.7 2E+02 0.0043 24.8 6.9 41 60-109 199-240 (405)
285 PRK13578 ornithine decarboxyla 31.3 21 0.00046 33.7 0.8 30 41-70 286-320 (720)
286 smart00490 HELICc helicase sup 31.1 1.3E+02 0.0028 18.4 4.5 32 7-45 11-44 (82)
287 COG1435 Tdk Thymidine kinase [ 31.0 51 0.0011 26.1 2.8 14 61-74 83-96 (201)
288 cd00047 PTPc Protein tyrosine 30.7 40 0.00087 26.5 2.2 26 99-124 38-63 (231)
289 PHA03333 putative ATPase subun 30.7 64 0.0014 30.6 3.7 18 57-74 291-308 (752)
290 PRK11773 uvrD DNA-dependent he 30.6 42 0.00092 31.6 2.7 40 59-113 212-252 (721)
291 PHA03372 DNA packaging termina 30.6 69 0.0015 29.9 3.9 21 54-74 293-313 (668)
292 PRK05703 flhF flagellar biosyn 30.6 1.6E+02 0.0034 26.0 6.1 59 60-128 299-360 (424)
293 PHA00350 putative assembly pro 30.4 25 0.00054 30.8 1.0 12 63-74 84-95 (399)
294 COG0853 PanD Aspartate 1-decar 30.2 35 0.00075 24.8 1.6 32 41-74 84-115 (126)
295 smart00194 PTPc Protein tyrosi 30.2 43 0.00094 26.8 2.4 25 99-123 66-90 (258)
296 PRK00149 dnaA chromosomal repl 30.1 2.3E+02 0.005 24.9 7.1 15 60-74 211-225 (450)
297 PF02399 Herpes_ori_bp: Origin 30.0 43 0.00092 32.1 2.5 82 38-128 121-204 (824)
298 TIGR01073 pcrA ATP-dependent D 30.0 48 0.001 31.2 2.9 40 59-113 208-248 (726)
299 COG0470 HolB ATPase involved i 30.0 87 0.0019 25.6 4.2 40 59-109 108-147 (325)
300 PRK07132 DNA polymerase III su 29.7 72 0.0016 26.7 3.7 54 45-109 70-128 (299)
301 PRK05917 DNA polymerase III su 29.5 65 0.0014 27.0 3.3 40 59-109 94-133 (290)
302 PRK15399 lysine decarboxylase 29.5 27 0.00059 32.9 1.2 32 40-71 300-334 (713)
303 COG1643 HrpA HrpA-like helicas 29.2 30 0.00065 33.4 1.4 48 60-120 162-215 (845)
304 PF01637 Arch_ATPase: Archaeal 29.1 67 0.0015 24.5 3.3 12 62-73 120-131 (234)
305 PF05496 RuvB_N: Holliday junc 28.7 57 0.0012 26.4 2.7 15 60-74 101-115 (233)
306 PRK08903 DnaA regulatory inact 28.5 56 0.0012 25.6 2.7 72 39-123 71-147 (227)
307 PHA02746 protein tyrosine phos 28.3 63 0.0014 27.3 3.1 26 98-123 109-134 (323)
308 TIGR01075 uvrD DNA helicase II 28.0 52 0.0011 30.9 2.8 41 59-113 207-247 (715)
309 PRK13435 response regulator; P 27.9 2.1E+02 0.0047 19.9 7.9 56 5-70 3-60 (145)
310 PRK15029 arginine decarboxylas 27.9 30 0.00065 32.9 1.2 30 41-70 316-350 (755)
311 COG1198 PriA Primosomal protei 27.8 1.3E+02 0.0028 28.7 5.2 88 8-111 271-360 (730)
312 PHA02747 protein tyrosine phos 27.4 68 0.0015 26.9 3.1 27 97-123 88-114 (312)
313 PF00072 Response_reg: Respons 27.1 1.9E+02 0.0041 19.0 6.6 89 11-123 2-91 (112)
314 PHA02742 protein tyrosine phos 26.9 72 0.0016 26.6 3.2 26 98-123 89-114 (303)
315 COG0156 BioF 7-keto-8-aminopel 25.7 57 0.0012 28.5 2.4 35 40-74 172-214 (388)
316 PF00265 TK: Thymidine kinase; 25.5 1.4E+02 0.0031 22.8 4.4 14 60-73 76-89 (176)
317 PHA02740 protein tyrosine phos 25.4 62 0.0014 27.0 2.5 27 97-123 86-112 (298)
318 PRK06893 DNA replication initi 25.2 93 0.002 24.6 3.4 55 60-123 91-151 (229)
319 TIGR03744 traC_PFL_4706 conjug 25.0 24 0.00052 34.1 0.0 14 61-74 734-747 (893)
320 PRK10919 ATP-dependent DNA hel 24.9 61 0.0013 30.3 2.6 40 59-113 206-246 (672)
321 PHA00728 hypothetical protein 24.7 2.7E+02 0.0059 20.2 5.3 53 87-143 45-105 (151)
322 PF00102 Y_phosphatase: Protei 24.6 63 0.0014 25.0 2.3 28 100-127 40-67 (235)
323 TIGR02928 orc1/cdc6 family rep 24.6 74 0.0016 26.7 2.9 13 61-73 130-142 (365)
324 PRK00080 ruvB Holliday junctio 24.3 2.5E+02 0.0055 23.4 6.1 15 60-74 102-116 (328)
325 PHA02738 hypothetical protein; 24.2 62 0.0013 27.3 2.3 27 97-123 85-111 (320)
326 KOG0327|consensus 23.9 1.4E+02 0.003 26.1 4.4 65 37-111 144-211 (397)
327 COG0593 DnaA ATPase involved i 23.6 2.9E+02 0.0064 24.3 6.4 106 9-124 115-235 (408)
328 PRK15400 lysine decarboxylase 23.6 37 0.00081 32.1 0.9 32 40-71 300-334 (714)
329 PF10566 Glyco_hydro_97: Glyco 23.5 80 0.0017 26.2 2.8 28 44-71 29-56 (273)
330 KOG0923|consensus 23.1 59 0.0013 30.7 2.1 58 60-129 378-440 (902)
331 PF03237 Terminase_6: Terminas 22.9 2.3E+02 0.0049 23.2 5.5 23 52-74 89-111 (384)
332 PRK06526 transposase; Provisio 22.5 1E+02 0.0022 25.0 3.3 15 60-74 159-173 (254)
333 PRK06581 DNA polymerase III su 22.1 1E+02 0.0022 25.4 3.1 39 59-108 88-126 (263)
334 COG3727 Vsr DNA G:T-mismatch r 21.8 58 0.0013 24.1 1.5 19 53-71 101-119 (150)
335 PTZ00293 thymidine kinase; Pro 21.1 1.6E+02 0.0034 23.5 3.9 14 60-73 77-90 (211)
336 cd06919 Asp_decarbox Aspartate 20.5 82 0.0018 22.5 2.0 28 40-69 83-110 (111)
No 1
>KOG0391|consensus
Probab=100.00 E-value=1.5e-35 Score=270.32 Aligned_cols=165 Identities=43% Similarity=0.789 Sum_probs=150.9
Q ss_pred CCccCCCCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEcccccccCcccccc
Q psy13032 1 MERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYSY 80 (190)
Q Consensus 1 i~k~~p~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~~~ 80 (190)
|+||||+++++.|.|+.++|+..++-| .+...||||||||..+..+...|....|.|+|+||||+|||
T Consensus 684 lKRwcPglKILTYyGs~kErkeKRqgW------~kPnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEaqnIKn------ 751 (1958)
T KOG0391|consen 684 LKRWCPGLKILTYYGSHKERKEKRQGW------AKPNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEAQNIKN------ 751 (1958)
T ss_pred HhhhCCcceEeeecCCHHHHHHHhhcc------cCCCeeEEeehhhHHHHhHHHHHHhhccceeehhhhhhhcc------
Confidence 589999999999999999999999887 45678999999999999999999999999999999999999
Q ss_pred cchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCCHHHHHHHHHhhCCCCCCChHHHHHHHhhhhhhhhhccCccchhhhh
Q psy13032 81 LNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDEREYP 160 (190)
Q Consensus 81 ~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~~~el~~ll~fl~p~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ 160 (190)
.++.+|+++..+++.+|+||||||+||++.|||+||+||.|..|.+.+.|+.||.+|+..-.+....-....+.
T Consensus 752 ------fksqrWQAllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltgmiEgsqeyn~klV~ 825 (1958)
T KOG0391|consen 752 ------FKSQRWQALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTGMIEGSQEYNHKLVI 825 (1958)
T ss_pred ------hhHHHHHHHhccchhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchhhcccchhhchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988777777777778888
Q ss_pred hHHHhh-----cccCCHHHhHHHHHHHH
Q psy13032 161 IVLMLI-----YSAHNKAEKSLYSSSRR 183 (190)
Q Consensus 161 ~l~~~l-----~~~~~~~e~~ly~~~~~ 183 (190)
+||+++ |+.+.+||++++.+.+.
T Consensus 826 RLHkVlrPfiLRRlK~dVEKQlpkKyEH 853 (1958)
T KOG0391|consen 826 RLHKVLRPFILRRLKRDVEKQLPKKYEH 853 (1958)
T ss_pred HHHHHhHHHHHHHHHHHHHHhcchhhhh
Confidence 888864 56777888887777654
No 2
>KOG0385|consensus
Probab=100.00 E-value=6.6e-35 Score=258.67 Aligned_cols=126 Identities=42% Similarity=0.830 Sum_probs=117.8
Q ss_pred CCccCCCCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEcccccccCcccccc
Q psy13032 1 MERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYSY 80 (190)
Q Consensus 1 i~k~~p~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~~~ 80 (190)
|+||||++++++|+|++.+|..+++.. -..+.|||||||||++.++...|..+.|.++||||||||||
T Consensus 236 f~rf~P~l~~~~~~Gdk~eR~~~~r~~------~~~~~fdV~iTsYEi~i~dk~~lk~~~W~ylvIDEaHRiKN------ 303 (971)
T KOG0385|consen 236 FKRFTPSLNVVVYHGDKEERAALRRDI------MLPGRFDVCITSYEIAIKDKSFLKKFNWRYLVIDEAHRIKN------ 303 (971)
T ss_pred HHHhCCCcceEEEeCCHHHHHHHHHHh------hccCCCceEeehHHHHHhhHHHHhcCCceEEEechhhhhcc------
Confidence 579999999999999999999887642 23358999999999999999999999999999999999999
Q ss_pred cchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCCHHHHHHHHHhhCCCCCCChHHHHHHHhhhh
Q psy13032 81 LNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDI 144 (190)
Q Consensus 81 ~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~~~el~~ll~fl~p~~~~~~~~F~~~~~~~~ 144 (190)
.+|..++.+..+++.+|+|+||||+||++.|||+||+||-|++|++.+.|..||....
T Consensus 304 ------~~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~ 361 (971)
T KOG0385|consen 304 ------EKSKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTN 361 (971)
T ss_pred ------hhhHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccc
Confidence 9999999999999999999999999999999999999999999999999999998653
No 3
>KOG0388|consensus
Probab=100.00 E-value=3.7e-35 Score=258.65 Aligned_cols=173 Identities=62% Similarity=1.106 Sum_probs=163.3
Q ss_pred CCccCCCCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEcccccccCcccccc
Q psy13032 1 MERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYSY 80 (190)
Q Consensus 1 i~k~~p~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~~~ 80 (190)
|.||+|+++++.|+|+..+|+.++.+|..+++-.+...||||||||.++..+..+|+.+.|.++|+|||+.||+
T Consensus 636 isrFlP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qkvKWQYMILDEAQAIKS------ 709 (1185)
T KOG0388|consen 636 ISRFLPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQKVKWQYMILDEAQAIKS------ 709 (1185)
T ss_pred HHHhCccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHhhhhhheehhHHHHhhh------
Confidence 56899999999999999999999999999888888899999999999999999999999999999999999999
Q ss_pred cchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCCHHHHHHHHHhhCCCCCCChHHHHHHHhhhhhhhhhccCccchhhhh
Q psy13032 81 LNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDEREYP 160 (190)
Q Consensus 81 ~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~~~el~~ll~fl~p~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ 160 (190)
+.|.+++.+.+++|+.|++|||||+||+..|||+|++|+.|..|.+..+|.+||.+.|+.+...+...+++.+.
T Consensus 710 ------SsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~tlneqqL~ 783 (1185)
T KOG0388|consen 710 ------SSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNTTLNEQQLQ 783 (1185)
T ss_pred ------hhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcCCcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhcc------------------------cCCHHHhHHHHHHHHhh
Q psy13032 161 IVLMLIYS------------------------AHNKAEKSLYSSSRRAS 185 (190)
Q Consensus 161 ~l~~~l~~------------------------~~~~~e~~ly~~~~~~~ 185 (190)
+||.+|++ .++..|+.||+.+.+..
T Consensus 784 RLH~ILKPFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~i 832 (1185)
T KOG0388|consen 784 RLHAILKPFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSI 832 (1185)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHh
Confidence 99997643 67777888888887764
No 4
>KOG0392|consensus
Probab=100.00 E-value=1.5e-33 Score=258.83 Aligned_cols=162 Identities=33% Similarity=0.595 Sum_probs=139.6
Q ss_pred CCccCCCCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEcccccccCcccccc
Q psy13032 1 MERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYSY 80 (190)
Q Consensus 1 i~k~~p~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~~~ 80 (190)
++||+|-++|+.|.|.+.+|..++.. ..+++|+||||+.+++|.+++.++.|.++|+||+|-|||
T Consensus 1050 ~~kf~pfL~v~~yvg~p~~r~~lR~q---------~~~~~iiVtSYDv~RnD~d~l~~~~wNYcVLDEGHVikN------ 1114 (1549)
T KOG0392|consen 1050 VKKFFPFLKVLQYVGPPAERRELRDQ---------YKNANIIVTSYDVVRNDVDYLIKIDWNYCVLDEGHVIKN------ 1114 (1549)
T ss_pred HHHhcchhhhhhhcCChHHHHHHHhh---------ccccceEEeeHHHHHHHHHHHHhcccceEEecCcceecc------
Confidence 36899999999999999999988853 366899999999999999999999999999999999999
Q ss_pred cchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCCHHHHHHHHHhhCCCCCCChHHHHHHHhhhhhhhhhccCccchhh--
Q psy13032 81 LNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERE-- 158 (190)
Q Consensus 81 ~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~~~el~~ll~fl~p~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~-- 158 (190)
.+++.+++++.+++.+|++|||||+||++.|||+|++||.|+.+|+..+|.++|.+||...+..+.+..+..
T Consensus 1115 ------~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG 1188 (1549)
T KOG0392|consen 1115 ------SKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAG 1188 (1549)
T ss_pred ------hHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999888777766642
Q ss_pred ---hhhHHH-----hhcccCCHHHhHHHHHHHH
Q psy13032 159 ---YPIVLM-----LIYSAHNKAEKSLYSSSRR 183 (190)
Q Consensus 159 ---~~~l~~-----~l~~~~~~~e~~ly~~~~~ 183 (190)
+..+|+ ++||.+.+|.++||+++-+
T Consensus 1189 ~lAleaLHKqVLPF~LRRlKedVL~DLPpKIIQ 1221 (1549)
T KOG0392|consen 1189 VLALEALHKQVLPFLLRRLKEDVLKDLPPKIIQ 1221 (1549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhh
Confidence 223332 4555555555555554433
No 5
>KOG0386|consensus
Probab=99.97 E-value=4.8e-31 Score=239.16 Aligned_cols=165 Identities=27% Similarity=0.604 Sum_probs=144.4
Q ss_pred CCccCCCCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEcccccccCcccccc
Q psy13032 1 MERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYSY 80 (190)
Q Consensus 1 i~k~~p~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~~~ 80 (190)
|.+|+|++..+.|.|++..|+.+... ...++|+|++|||+.+.++...|.++.|.++||||+|+|||
T Consensus 463 f~kWaPSv~~i~YkGtp~~R~~l~~q-------ir~gKFnVLlTtyEyiikdk~lLsKI~W~yMIIDEGHRmKN------ 529 (1157)
T KOG0386|consen 463 FPKWAPSVQKIQYKGTPQQRSGLTKQ-------QRHGKFNVLLTTYEYIIKDKALLSKISWKYMIIDEGHRMKN------ 529 (1157)
T ss_pred ccccccceeeeeeeCCHHHHhhHHHH-------HhcccceeeeeeHHHhcCCHHHHhccCCcceeecccccccc------
Confidence 68999999999999999999987653 23489999999999999999999999999999999999999
Q ss_pred cchhhhhhhHHHHHHh-cCCcCcEEEEecCCCCCCHHHHHHHHHhhCCCCCCChHHHHHHHhhhhhhhhhccC-ccchh-
Q psy13032 81 LNDIEREQSMRWKLLL-GFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKT-SIDER- 157 (190)
Q Consensus 81 ~~~~~~~~s~~~~~~~-~l~~~~r~lLTgTP~~n~~~el~~ll~fl~p~~~~~~~~F~~~~~~~~~~~~~~~~-~~~~~- 157 (190)
..++....+. ...+.+|++|||||+||++.|||+||+|+-|.+|.+...|..||..|+...++... +..+.
T Consensus 530 ------a~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtl 603 (1157)
T KOG0386|consen 530 ------AICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETL 603 (1157)
T ss_pred ------hhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHH
Confidence 9999999888 56899999999999999999999999999999999999999999999987764332 22222
Q ss_pred -hhhhHHHhh-----cccCCHHHhHHHHHHHHh
Q psy13032 158 -EYPIVLMLI-----YSAHNKAEKSLYSSSRRA 184 (190)
Q Consensus 158 -~~~~l~~~l-----~~~~~~~e~~ly~~~~~~ 184 (190)
.+.++|+|| ++.+++||.+||+++...
T Consensus 604 LIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~v 636 (1157)
T KOG0386|consen 604 LIIRRLHKVLRPFLLRRLKKEVEQELPDKVEDV 636 (1157)
T ss_pred HHHHHHHHhhhHHHHHhhhHHHhhhCchhhhHh
Confidence 467888876 558888999999888654
No 6
>KOG0389|consensus
Probab=99.96 E-value=1.7e-30 Score=231.33 Aligned_cols=168 Identities=31% Similarity=0.570 Sum_probs=133.5
Q ss_pred CCccCCCCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHh---cHHHhhccCccEEEEcccccccCccc
Q psy13032 1 MERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVS---DFKYFNRIKWQYLILDEAQAIVDINV 77 (190)
Q Consensus 1 i~k~~p~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~---~~~~l~~~~w~~vIvDEaH~lkn~~~ 77 (190)
|+||||+++|..|+|++.+|+.++... .....+|||++|||..+.. +..+|....|++||.||+|.+||
T Consensus 467 f~kwCPsl~Ve~YyGSq~ER~~lR~~i-----~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN--- 538 (941)
T KOG0389|consen 467 FAKWCPSLKVEPYYGSQDERRELRERI-----KKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKN--- 538 (941)
T ss_pred HHHhCCceEEEeccCcHHHHHHHHHHH-----hccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhc---
Confidence 579999999999999999999998654 2334689999999999976 56688999999999999999999
Q ss_pred ccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCCHHHHHHHHHhhCCCCCCCh-HHHHHHHhhhhhh-hhh------
Q psy13032 78 YSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSH-DEFNEWFSKDIES-HAE------ 149 (190)
Q Consensus 78 ~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~~~el~~ll~fl~p~~~~~~-~~F~~~~~~~~~~-~~~------ 149 (190)
..|.+|+.++.++++.|++|||||+||++.||++||.|+.|..|.+. ..+..-|..--.. +.-
T Consensus 539 ---------~~SeRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~ 609 (941)
T KOG0389|consen 539 ---------RTSERYKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLS 609 (941)
T ss_pred ---------cchHHHHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHH
Confidence 99999999999999999999999999999999999999999999765 5555544422110 000
Q ss_pred ------------------ccCccchhhhhhHHHhhcccCCHHHhHHHHHHHHhh
Q psy13032 150 ------------------NKTSIDEREYPIVLMLIYSAHNKAEKSLYSSSRRAS 185 (190)
Q Consensus 150 ------------------~~~~~~~~~~~~l~~~l~~~~~~~e~~ly~~~~~~~ 185 (190)
.+......+++++..+.++.|++.|+++|+.+....
T Consensus 610 qerIsrAK~im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~ 663 (941)
T KOG0389|consen 610 QERISRAKTIMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELY 663 (941)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHH
Confidence 111222234455555667788888888888877654
No 7
>KOG0387|consensus
Probab=99.96 E-value=1.8e-30 Score=231.31 Aligned_cols=172 Identities=23% Similarity=0.335 Sum_probs=141.7
Q ss_pred CCccCCCCeEEEEeCCHHH-HHH---HHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEcccccccCcc
Q psy13032 1 MERFVPDFKVVPYWGSPQE-RKI---LRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDIN 76 (190)
Q Consensus 1 i~k~~p~l~v~~~~G~~~~-r~~---~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~ 76 (190)
|.+|.|.++|.+|||+... |.. ....++..-.........|+||||+.++...+.+..+.|++||+||+|+|||
T Consensus 274 ~~~w~p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~l~~~~W~y~ILDEGH~IrN-- 351 (923)
T KOG0387|consen 274 FQTWWPPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGDDLLGILWDYVILDEGHRIRN-- 351 (923)
T ss_pred HHHhCcceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccCcccccccccEEEecCcccccC--
Confidence 4689999999999998762 110 0111111111223456789999999999999999999999999999999999
Q ss_pred cccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCCHHHHHHHHHhhCCCCCCChHHHHHHHhhhhhhhhhccCccch
Q psy13032 77 VYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDE 156 (190)
Q Consensus 77 ~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~~~el~~ll~fl~p~~~~~~~~F~~~~~~~~~~~~~~~~~~~~ 156 (190)
++|+++.+|.++++.+|++|||||+||++.|||+|++|+.|+.+|+...|.+.|..||..|...+++..+
T Consensus 352 ----------pns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~q 421 (923)
T KOG0387|consen 352 ----------PNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQ 421 (923)
T ss_pred ----------CccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999887665544
Q ss_pred h------------------------------hhhhHHHhhcccCCHHHhHHHHHHHHh
Q psy13032 157 R------------------------------EYPIVLMLIYSAHNKAEKSLYSSSRRA 184 (190)
Q Consensus 157 ~------------------------------~~~~l~~~l~~~~~~~e~~ly~~~~~~ 184 (190)
. ++.+-..|+.|.+++.|+++|.++...
T Consensus 422 v~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s 479 (923)
T KOG0387|consen 422 VQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNS 479 (923)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhh
Confidence 2 233334467889999999999988654
No 8
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.96 E-value=2.3e-29 Score=235.11 Aligned_cols=166 Identities=32% Similarity=0.627 Sum_probs=134.2
Q ss_pred CCccCCCCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEcccccccCcccccc
Q psy13032 1 MERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYSY 80 (190)
Q Consensus 1 i~k~~p~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~~~ 80 (190)
|++|+|.+++++|+|+...|..+...+ ...+.+|||||||+++.++...+..+.|++||+||||++||
T Consensus 238 i~kw~p~l~v~~~~G~~~eR~~~~~~~------~~~~~~dVvITSYe~l~~e~~~L~k~~W~~VIvDEAHrIKN------ 305 (1033)
T PLN03142 238 IRRFCPVLRAVKFHGNPEERAHQREEL------LVAGKFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRIKN------ 305 (1033)
T ss_pred HHHHCCCCceEEEeCCHHHHHHHHHHH------hcccCCCcceecHHHHHHHHHHhccCCCCEEEEcCccccCC------
Confidence 468999999999999998887665421 12357999999999999999999999999999999999999
Q ss_pred cchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCCHHHHHHHHHhhCCCCCCChHHHHHHHhhhhhhhhh-----------
Q psy13032 81 LNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAE----------- 149 (190)
Q Consensus 81 ~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~~~el~~ll~fl~p~~~~~~~~F~~~~~~~~~~~~~----------- 149 (190)
..|++++++..+++.+||+|||||++|++.|||++++||.|+.|++...|..+|..+......
T Consensus 306 ------~~Sklskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~ 379 (1033)
T PLN03142 306 ------ENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLR 379 (1033)
T ss_pred ------HHHHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999753211110
Q ss_pred ------ccCccchhhhhhHHHhhcccCCHHHhHHHHHHHHh
Q psy13032 150 ------NKTSIDEREYPIVLMLIYSAHNKAEKSLYSSSRRA 184 (190)
Q Consensus 150 ------~~~~~~~~~~~~l~~~l~~~~~~~e~~ly~~~~~~ 184 (190)
.+......++++...++...+++.|+++|..+...
T Consensus 380 pf~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k 420 (1033)
T PLN03142 380 PFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQK 420 (1033)
T ss_pred HHHhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHH
Confidence 00111112233333445667888999999888654
No 9
>KOG0384|consensus
Probab=99.95 E-value=1.1e-28 Score=227.34 Aligned_cols=171 Identities=33% Similarity=0.616 Sum_probs=140.2
Q ss_pred CCccCCCCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEcccccccCcccccc
Q psy13032 1 MERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYSY 80 (190)
Q Consensus 1 i~k~~p~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~~~ 80 (190)
|++|+ ++++++|+|+...|..++++..-.....+.-+|+++||||+++.++..+|.+++|.+++|||||++||
T Consensus 439 f~~w~-~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~~i~w~~~~vDeahrLkN------ 511 (1373)
T KOG0384|consen 439 FETWT-DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELSKIPWRYLLVDEAHRLKN------ 511 (1373)
T ss_pred HHHHh-hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhccCCcceeeecHHhhcCc------
Confidence 56899 99999999999999999887211111133458999999999999999999999999999999999999
Q ss_pred cchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCCHHHHHHHHHhhCCCCCCChHHHHHHHhhhhhhh-------------
Q psy13032 81 LNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESH------------- 147 (190)
Q Consensus 81 ~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~~~el~~ll~fl~p~~~~~~~~F~~~~~~~~~~~------------- 147 (190)
..+..+..+..++..+|+++||||+||++.|||+|++||.|+.|.+...|...+..--+.+
T Consensus 512 ------~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~l 585 (1373)
T KOG0384|consen 512 ------DESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLL 585 (1373)
T ss_pred ------hHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHH
Confidence 9999999999999999999999999999999999999999999999999988772111111
Q ss_pred hhccCccchhhhhhHHHhhcccCCHHHhHHHHHHHHh
Q psy13032 148 AENKTSIDEREYPIVLMLIYSAHNKAEKSLYSSSRRA 184 (190)
Q Consensus 148 ~~~~~~~~~~~~~~l~~~l~~~~~~~e~~ly~~~~~~ 184 (190)
+..+.+....++++.+.+|+..+++.|++.|..|...
T Consensus 586 Rr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtk 622 (1373)
T KOG0384|consen 586 RRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTK 622 (1373)
T ss_pred HHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHh
Confidence 0112233334566677788889999999998887654
No 10
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.91 E-value=1.4e-24 Score=178.82 Aligned_cols=165 Identities=30% Similarity=0.578 Sum_probs=127.3
Q ss_pred CccC-C-CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHH-----hcHHHhhccCccEEEEcccccccC
Q psy13032 2 ERFV-P-DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVV-----SDFKYFNRIKWQYLILDEAQAIVD 74 (190)
Q Consensus 2 ~k~~-p-~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~-----~~~~~l~~~~w~~vIvDEaH~lkn 74 (190)
.+|+ | ++++++|.|....+.. .......++++||||+++. ...+.+....|++||+||||.+||
T Consensus 78 ~~~~~~~~~~v~~~~~~~~~~~~---------~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~ 148 (299)
T PF00176_consen 78 EKWFDPDSLRVIIYDGDSERRRL---------SKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKN 148 (299)
T ss_dssp HHHSGT-TS-EEEESSSCHHHHT---------TSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTT
T ss_pred ccccccccccccccccccccccc---------cccccccceeeeccccccccccccccccccccccceeEEEeccccccc
Confidence 5677 4 7899999998732221 1344578999999999999 677788889999999999999999
Q ss_pred cccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCCHHHHHHHHHhhCCCCCCChHHHHHHHhhhhhhhhh-----
Q psy13032 75 INVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAE----- 149 (190)
Q Consensus 75 ~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~~~el~~ll~fl~p~~~~~~~~F~~~~~~~~~~~~~----- 149 (190)
..+..++++..+.+.++|+|||||++|++.|+|++++||.|+.+++...|.+.+..+......
T Consensus 149 ------------~~s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 216 (299)
T PF00176_consen 149 ------------KDSKRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRPDKENSYENIER 216 (299)
T ss_dssp ------------TTSHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHHHHTHHHHHHHH
T ss_pred ------------ccccccccccccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhhccccccccccc
Confidence 999999999999999999999999999999999999999999999999999988654111110
Q ss_pred ------------ccCccchhhhhhHHHhhcccCCHHHhHHHHHHHHhhCC
Q psy13032 150 ------------NKTSIDEREYPIVLMLIYSAHNKAEKSLYSSSRRASSP 187 (190)
Q Consensus 150 ------------~~~~~~~~~~~~l~~~l~~~~~~~e~~ly~~~~~~~~~ 187 (190)
...+....+++....++...+++.|+++|+.+.+....
T Consensus 217 L~~~l~~~~~r~~~~d~~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~ 266 (299)
T PF00176_consen 217 LRELLSEFMIRRTKKDVEKELPPKIEHVINVELSPEQRELYNELLKEARE 266 (299)
T ss_dssp HHHHHCCCEECHCGGGGCTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGG
T ss_pred cccccchhhhhhhcccccccCCceEEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 01111123344455567789999999999998877643
No 11
>KOG4439|consensus
Probab=99.91 E-value=8.1e-25 Score=193.34 Aligned_cols=156 Identities=26% Similarity=0.377 Sum_probs=120.6
Q ss_pred CeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHh----------cHHHhhccCccEEEEcccccccCccc
Q psy13032 8 FKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVS----------DFKYFNRIKWQYLILDEAQAIVDINV 77 (190)
Q Consensus 8 l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~----------~~~~l~~~~w~~vIvDEaH~lkn~~~ 77 (190)
++|++|||+.+ |. +. .....+||||||||..+.+ +...+..+.|.+||+||||.+||
T Consensus 411 LsV~~~HG~n~-r~-i~--------~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN--- 477 (901)
T KOG4439|consen 411 LSVYLYHGPNK-RE-IS--------AKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRN--- 477 (901)
T ss_pred eEEEEecCCcc-cc-CC--------HHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcc---
Confidence 78999999985 22 11 1234789999999999987 23467889999999999999999
Q ss_pred ccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCCHHHHHHHHHhhCCCCCCChHHHHHHHhhhhhhhhhccCccch-
Q psy13032 78 YSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDE- 156 (190)
Q Consensus 78 ~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~~~el~~ll~fl~p~~~~~~~~F~~~~~~~~~~~~~~~~~~~~- 156 (190)
++++.+.+++.|.+..||+|||||+||++-|+|+|+.||+..+|++...|++++..+-..+... .....
T Consensus 478 ---------~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~~s~~g~~r-lnll~K 547 (901)
T KOG4439|consen 478 ---------SNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDNMSKGGANR-LNLLTK 547 (901)
T ss_pred ---------cchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccCccccchhh-hhhhhh
Confidence 9999999999999999999999999999999999999999999999999999887443322211 00000
Q ss_pred -hhhhh-----------------HHHhhcccCCHHHhHHHHHHHHhhC
Q psy13032 157 -REYPI-----------------VLMLIYSAHNKAEKSLYSSSRRASS 186 (190)
Q Consensus 157 -~~~~~-----------------l~~~l~~~~~~~e~~ly~~~~~~~~ 186 (190)
-+++| --.++.-.++..|...|+-+...+.
T Consensus 548 ~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~ask 595 (901)
T KOG4439|consen 548 SLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASK 595 (901)
T ss_pred hHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHH
Confidence 01111 1112344788999999998887764
No 12
>KOG1015|consensus
Probab=99.88 E-value=4.2e-23 Score=186.92 Aligned_cols=163 Identities=21% Similarity=0.327 Sum_probs=129.3
Q ss_pred CCccCCCCe------EEEEe--CCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcH---------------HHhh
Q psy13032 1 MERFVPDFK------VVPYW--GSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDF---------------KYFN 57 (190)
Q Consensus 1 i~k~~p~l~------v~~~~--G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~---------------~~l~ 57 (190)
|+||.|++. |.-.. -.+..|...++.|.+. -.|+|+.|++++... ..+.
T Consensus 747 FekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~~~--------ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lv 818 (1567)
T KOG1015|consen 747 FEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQED--------GGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALV 818 (1567)
T ss_pred HHHhcccccccccceeehhhhccChHHHHHHHHHHHhc--------CCEEEEehHHHHHHhcccchhhhHHHHHHHHhcc
Confidence 578998643 22222 2335566677766332 269999999998631 1344
Q ss_pred ccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCCHHHHHHHHHhhCCCCCCChHHHH
Q psy13032 58 RIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFN 137 (190)
Q Consensus 58 ~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~~~el~~ll~fl~p~~~~~~~~F~ 137 (190)
.-+.|+||+||||.||| ..+..++++..+++++|++|||||+||++.|+|.|++|+.|+.||+..+|+
T Consensus 819 dpGPD~vVCDE~HiLKN------------eksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~Efr 886 (1567)
T KOG1015|consen 819 DPGPDFVVCDEGHILKN------------EKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFR 886 (1567)
T ss_pred CCCCCeEEecchhhhcc------------chHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHHHH
Confidence 56899999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhhccCccchh-----------------------------hhhhHHHhhcccCCHHHhHHHHHHHH
Q psy13032 138 EWFSKDIESHAENKTSIDER-----------------------------EYPIVLMLIYSAHNKAEKSLYSSSRR 183 (190)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~l~~~l~~~~~~~e~~ly~~~~~ 183 (190)
.+|.+||.+|.-.+++..+- ++++...+|...+++.|..||.....
T Consensus 887 NRFvNpI~nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL~ 961 (1567)
T KOG1015|consen 887 NRFVNPIQNGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYLD 961 (1567)
T ss_pred HhhcCccccCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHHh
Confidence 99999999998776554432 23333345566899999999998766
No 13
>KOG0390|consensus
Probab=99.87 E-value=6.8e-22 Score=179.05 Aligned_cols=166 Identities=22% Similarity=0.365 Sum_probs=133.1
Q ss_pred CCccCC--CCeEEEEeCCHHH----HHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEcccccccC
Q psy13032 1 MERFVP--DFKVVPYWGSPQE----RKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVD 74 (190)
Q Consensus 1 i~k~~p--~l~v~~~~G~~~~----r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn 74 (190)
|.||.- .+..+.+.|..++ .+.+... ....-..-|+|.||++++.+...+....++++|+||+|++||
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~------~~~~~~~~vli~sye~~~~~~~~il~~~~glLVcDEGHrlkN 390 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKSSWIKLKSILFL------GYKQFTTPVLIISYETASDYCRKILLIRPGLLVCDEGHRLKN 390 (776)
T ss_pred HHHhccccccceeeeecccchhhhhhHHHHHh------hhhheeEEEEeccHHHHHHHHHHHhcCCCCeEEECCCCCccc
Confidence 346764 5777777877765 1111111 112234569999999999999999999999999999999999
Q ss_pred cccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCCHHHHHHHHHhhCCCCCCChHHHHHHHhhhhhhhhhccCcc
Q psy13032 75 INVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSI 154 (190)
Q Consensus 75 ~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~~~el~~ll~fl~p~~~~~~~~F~~~~~~~~~~~~~~~~~~ 154 (190)
..+.+++++.++++++|++|||||+||++.|+|++++|++|+.+|+...|.+.+..|+..+++.+.+.
T Consensus 391 ------------~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~ 458 (776)
T KOG0390|consen 391 ------------SDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASE 458 (776)
T ss_pred ------------hhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999877765544
Q ss_pred chhh----hhhHHH------------------------hhcccCCHHHhHHHHHHHHh
Q psy13032 155 DERE----YPIVLM------------------------LIYSAHNKAEKSLYSSSRRA 184 (190)
Q Consensus 155 ~~~~----~~~l~~------------------------~l~~~~~~~e~~ly~~~~~~ 184 (190)
.+.. +..|.. ++.+..++.|.++|.++.+.
T Consensus 459 e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~ 516 (776)
T KOG0390|consen 459 EDREREERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDS 516 (776)
T ss_pred hhhhhHHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHH
Confidence 4433 222222 33447889999999999886
No 14
>KOG1002|consensus
Probab=99.85 E-value=7.6e-22 Score=169.55 Aligned_cols=106 Identities=35% Similarity=0.590 Sum_probs=90.0
Q ss_pred CccCC-CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcH-----------------HHhhccCccE
Q psy13032 2 ERFVP-DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDF-----------------KYFNRIKWQY 63 (190)
Q Consensus 2 ~k~~p-~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~-----------------~~l~~~~w~~ 63 (190)
++++. .++|++|||.++.... . ....||||+|||..+-... ..|.++.|.+
T Consensus 251 ~~~T~gslkv~~YhG~~R~~ni-k----------el~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~R 319 (791)
T KOG1002|consen 251 ERHTSGSLKVYIYHGAKRDKNI-K----------ELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYR 319 (791)
T ss_pred HHhccCceEEEEEecccccCCH-H----------HhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeee
Confidence 44553 6899999999765432 1 2367999999999986532 2467889999
Q ss_pred EEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCCHHHHHHHHHhhCCCCC
Q psy13032 64 LILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMF 130 (190)
Q Consensus 64 vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~~~el~~ll~fl~p~~~ 130 (190)
||+||||.||+ ..+...+++..|.+.+||+|||||+||++.|||+|++||.-.+|
T Consensus 320 iIlDEAH~IK~------------R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pf 374 (791)
T KOG1002|consen 320 IILDEAHNIKD------------RQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPF 374 (791)
T ss_pred eehhhhccccc------------ccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcc
Confidence 99999999999 88999999999999999999999999999999999999998776
No 15
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.84 E-value=6.8e-21 Score=177.08 Aligned_cols=133 Identities=38% Similarity=0.677 Sum_probs=115.1
Q ss_pred CCccCCCCe-EEEEeCCHHH----HHHHHHHhhhhcccCCCCCccEEEecHHHHHh---cHHHhhccCccEEEEcccccc
Q psy13032 1 MERFVPDFK-VVPYWGSPQE----RKILRQFWDMKNLHTKDASFHVVITSYQLVVS---DFKYFNRIKWQYLILDEAQAI 72 (190)
Q Consensus 1 i~k~~p~l~-v~~~~G~~~~----r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~---~~~~l~~~~w~~vIvDEaH~l 72 (190)
+++|+|.++ +.+++|.... +..+.+...... ...+++++|||+.+.+ +...+.+..|+++|+||||++
T Consensus 409 ~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~i 484 (866)
T COG0553 409 FEKFAPDLRLVLVYHGEKSELDKKREALRDLLKLHL----VIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRI 484 (866)
T ss_pred HhhhCccccceeeeeCCcccccHHHHHHHHHhhhcc----cceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHH
Confidence 468999999 9999998863 444444321110 2248999999999999 999999999999999999999
Q ss_pred cCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCCHHHHHHHHH-hhCCCCCC-ChHHHHHHHhhhhhhhhh
Q psy13032 73 VDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLH-FIMPSMFD-SHDEFNEWFSKDIESHAE 149 (190)
Q Consensus 73 kn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~~~el~~ll~-fl~p~~~~-~~~~F~~~~~~~~~~~~~ 149 (190)
|| ..+..++++..+++.++++|||||++|++.|||++++ |+.|+.++ +...|.++|..|+.....
T Consensus 485 kn------------~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~ 551 (866)
T COG0553 485 KN------------DQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEED 551 (866)
T ss_pred hh------------hhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhccc
Confidence 99 9999999999999999999999999999999999999 99999999 559999999999876554
No 16
>KOG1016|consensus
Probab=99.78 E-value=1.3e-18 Score=155.72 Aligned_cols=155 Identities=19% Similarity=0.312 Sum_probs=119.2
Q ss_pred CeEEEEeCCH---HHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHH------------------------------
Q psy13032 8 FKVVPYWGSP---QERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK------------------------------ 54 (190)
Q Consensus 8 l~v~~~~G~~---~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~------------------------------ 54 (190)
+.|++..... ..|.+....|. ..-.|+++.||+++-...
T Consensus 349 F~vf~LnD~~KT~~~Rakvi~~Wv--------~~GGVlLvGYemfRLL~lk~~~~~grpkkt~kr~~~~~i~~d~eD~~q 420 (1387)
T KOG1016|consen 349 FEVFLLNDGVKTFDQRAKVIEQWV--------QTGGVLLVGYEMFRLLILKTLPKKGRPKKTLKRISSGFIKDDSEDQRQ 420 (1387)
T ss_pred eEEEEecCchhhHHHHHHHHHHHh--------ccCCEEEehHHHHHHHHHhcccccCCccccccccCCcccCCchhhhHH
Confidence 5677665544 34666665553 233599999999974221
Q ss_pred --------HhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCCHHHHHHHHHhhC
Q psy13032 55 --------YFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIM 126 (190)
Q Consensus 55 --------~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~~~el~~ll~fl~ 126 (190)
.|.+-+.|+||+||+|+||| ..+.++.++..+++++|+.|||-|+||++.|.|.|++|++
T Consensus 421 e~~~li~~AL~~PGPDlVICDEGHrIKN------------~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEYwCMVDFVR 488 (1387)
T KOG1016|consen 421 EAYSLIRSALLEPGPDLVICDEGHRIKN------------ITAEISMALKAIRTRRRIVLTGYPLQNNLLEYWCMVDFVR 488 (1387)
T ss_pred HHHHHHHHHhcCCCCCeEEecCCceecc------------chHHHHHHHHHhhhceeEEEeccccccchHHHhhhheecc
Confidence 23345789999999999999 8999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHhhhhhhhhhccCccchh-hh----------------hhHHH------------hhcccCCHHHhHH
Q psy13032 127 PSMFDSHDEFNEWFSKDIESHAENKTSIDER-EY----------------PIVLM------------LIYSAHNKAEKSL 177 (190)
Q Consensus 127 p~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~-~~----------------~~l~~------------~l~~~~~~~e~~l 177 (190)
|+.+|++.+|...|.+||..|.--+.+-+.- ++ +|.|. +|-..++..|++|
T Consensus 489 P~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk~~LP~k~EyViLvr~s~iQR~L 568 (1387)
T KOG1016|consen 489 PKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLKKILPEKKEYVILVRKSQIQRQL 568 (1387)
T ss_pred ccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHhhhcccccceEEEEeHHHHHHHH
Confidence 9999999999999999999886544433332 11 11222 2233788999999
Q ss_pred HHHHH
Q psy13032 178 YSSSR 182 (190)
Q Consensus 178 y~~~~ 182 (190)
|+..-
T Consensus 569 Y~~Fm 573 (1387)
T KOG1016|consen 569 YRNFM 573 (1387)
T ss_pred HHHHH
Confidence 98765
No 17
>KOG0383|consensus
Probab=99.77 E-value=1.6e-19 Score=162.43 Aligned_cols=172 Identities=29% Similarity=0.493 Sum_probs=139.3
Q ss_pred CCccCCCCeEEEEeCCHHHHHHHHHH-hhhhcc------------cCCCCCccEEEecHHHHHhcHHHhhccCccEEEEc
Q psy13032 1 MERFVPDFKVVPYWGSPQERKILRQF-WDMKNL------------HTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILD 67 (190)
Q Consensus 1 i~k~~p~l~v~~~~G~~~~r~~~~~~-~~~~~~------------~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvD 67 (190)
++.|+|++.|+.|+|+.+.|..+++. +..... .....+++|..++|++...+...+..+.|.++|+|
T Consensus 364 ~~~wap~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~~~il~~v~w~~livd 443 (696)
T KOG0383|consen 364 FELWAPSFYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEIDQSILFSVQWGLLIVD 443 (696)
T ss_pred hhccCCCcccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcccCHHHHhhhhcceeEee
Confidence 46799999999999999999888764 222211 12447899999999999999999999999999999
Q ss_pred ccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCCHHHHHHHHHhhCCCCCCChHHHHHHHhhhhhhh
Q psy13032 68 EAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESH 147 (190)
Q Consensus 68 EaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~~~el~~ll~fl~p~~~~~~~~F~~~~~~~~~~~ 147 (190)
|+|+++| ..+++++.+......++++|||||.||++.||+++|+|+.|+.|.+...|.+.|..-....
T Consensus 444 e~~rlkn------------~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d~~~~~ 511 (696)
T KOG0383|consen 444 EAHRLKN------------KQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHDISCEE 511 (696)
T ss_pred chhhccc------------chhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcchhhHHH
Confidence 9999999 9999999999999999999999999999999999999999999999999988887543322
Q ss_pred hhc--------------cCccchhhhhhHHHhhcccCCHHHhHHHHHHHHh
Q psy13032 148 AEN--------------KTSIDEREYPIVLMLIYSAHNKAEKSLYSSSRRA 184 (190)
Q Consensus 148 ~~~--------------~~~~~~~~~~~l~~~l~~~~~~~e~~ly~~~~~~ 184 (190)
... +.+....++.++..+++-.++..|++.|.++...
T Consensus 512 ~~~~l~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~ 562 (696)
T KOG0383|consen 512 QIKKLHLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTR 562 (696)
T ss_pred HHHhhccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcC
Confidence 211 1111112344555566779999999999988754
No 18
>KOG1001|consensus
Probab=99.76 E-value=2.2e-18 Score=156.08 Aligned_cols=153 Identities=24% Similarity=0.417 Sum_probs=120.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEcccccccCcccccccchhhh
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYSYLNDIER 86 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~ 86 (190)
.+.+++|+|..++ .....++|||||||+++.. ..+..+.|-+||+||||.++|
T Consensus 216 ~l~v~v~~gr~kd-------------~~el~~~dVVltTy~il~~--~~l~~i~w~Riildea~~ikn------------ 268 (674)
T KOG1001|consen 216 KLSIYVYHGRTKD-------------KSELNSYDVVLTTYDILKN--SPLVKIKWLRIVLDEAHTIKN------------ 268 (674)
T ss_pred ceEEEEecccccc-------------cchhcCCceEEeeHHHhhc--ccccceeEEEEEeccccccCC------------
Confidence 6889999991111 2334789999999999986 445668999999999999999
Q ss_pred hhhHHHHHHhcCCcCcEEEEecCCCCCCHHHHHHHHHhhCCCCCCChHHHHHHHhhhhhhhhhccCccc-----------
Q psy13032 87 EQSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSID----------- 155 (190)
Q Consensus 87 ~~s~~~~~~~~l~~~~r~lLTgTP~~n~~~el~~ll~fl~p~~~~~~~~F~~~~~~~~~~~~~~~~~~~----------- 155 (190)
.+++.++++..+.+.+||+|||||+||+++|||+++.|+.-+++.....|...+..|+..+........
T Consensus 269 ~~tq~~~a~~~L~a~~RWcLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~~~~~k~l~~~L~~v~lr 348 (674)
T KOG1001|consen 269 KDTQIFKAVCQLDAKYRWCLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKYKEGVKTLQGILKKVMLR 348 (674)
T ss_pred cchHhhhhheeeccceeeeecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999887652100000
Q ss_pred ------------hhhhhhHHHhhcccCCHHHhHHHHHHHHhhC
Q psy13032 156 ------------EREYPIVLMLIYSAHNKAEKSLYSSSRRASS 186 (190)
Q Consensus 156 ------------~~~~~~l~~~l~~~~~~~e~~ly~~~~~~~~ 186 (190)
..++++.-.++...++..|++.|.++...+.
T Consensus 349 rtK~~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~ 391 (674)
T KOG1001|consen 349 RTKEMEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSR 391 (674)
T ss_pred ccccccccCccccccCcceeEeeeccccHhHHHHHHHHhhhhh
Confidence 0111122222344777889999998887653
No 19
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.73 E-value=1.1e-17 Score=156.49 Aligned_cols=96 Identities=23% Similarity=0.305 Sum_probs=82.2
Q ss_pred CCccEEEecHHHHHhcH---HHhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcC--CcCcEEEEecCCC
Q psy13032 37 ASFHVVITSYQLVVSDF---KYFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGF--SCRNRLLLSGTPI 111 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~---~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l--~~~~r~lLTgTP~ 111 (190)
..++++|+||++++++. +.+....||+|||||||+++|... ..|+.++.+..+ +++++++|||||+
T Consensus 246 ~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~---------~~s~~y~~v~~La~~~~~~LLLTATP~ 316 (956)
T PRK04914 246 ETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEE---------APSREYQVVEQLAEVIPGVLLLTATPE 316 (956)
T ss_pred ccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCC---------CcCHHHHHHHHHhhccCCEEEEEcCcc
Confidence 45789999999999854 456778999999999999996321 356668888877 5789999999999
Q ss_pred CCCHHHHHHHHHhhCCCCCCChHHHHHHHh
Q psy13032 112 QNSMAELWALLHFIMPSMFDSHDEFNEWFS 141 (190)
Q Consensus 112 ~n~~~el~~ll~fl~p~~~~~~~~F~~~~~ 141 (190)
||+..|+|++++||+|+.|++...|.+..+
T Consensus 317 q~~~~e~falL~lLdP~~f~~~~~F~~e~~ 346 (956)
T PRK04914 317 QLGQESHFARLRLLDPDRFHDYEAFVEEQQ 346 (956)
T ss_pred cCCcHHHHHhhhhhCCCcCCCHHHHHHHHH
Confidence 999999999999999999999999987655
No 20
>KOG0298|consensus
Probab=99.73 E-value=3.4e-18 Score=159.10 Aligned_cols=125 Identities=22% Similarity=0.410 Sum_probs=105.5
Q ss_pred CCccCCCC-eEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHH----------------------Hhh
Q psy13032 1 MERFVPDF-KVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK----------------------YFN 57 (190)
Q Consensus 1 i~k~~p~l-~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~----------------------~l~ 57 (190)
|.++++++ +|+.|.|..+.-.. -+.....||||+|||++++.+.. .|.
T Consensus 439 I~kH~~~~lKv~~Y~Girk~~~~---------~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~ 509 (1394)
T KOG0298|consen 439 IHKHISSLLKVLLYFGIRKTFWL---------SPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLL 509 (1394)
T ss_pred HHHhccccceEEEEechhhhccc---------CchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchH
Confidence 45788866 99999998653211 01234789999999999998643 244
Q ss_pred ccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCCHHHHHHHHHhhCCCCCCChHHHH
Q psy13032 58 RIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFN 137 (190)
Q Consensus 58 ~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~~~el~~ll~fl~p~~~~~~~~F~ 137 (190)
.+.|++|||||||.+.. ..|+.++++..|.+.++|+.||||+|+ ++|||+||.||.-.+|++...|.
T Consensus 510 ~v~wWRIclDEaQMves------------ssS~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~i 576 (1394)
T KOG0298|consen 510 MVNWWRICLDEAQMVES------------SSSAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFI 576 (1394)
T ss_pred HHHHHHHhhhHHHhhcc------------hHHHHHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHH
Confidence 56899999999999998 999999999999999999999999999 99999999999999999999998
Q ss_pred HHHhhhhhhh
Q psy13032 138 EWFSKDIESH 147 (190)
Q Consensus 138 ~~~~~~~~~~ 147 (190)
+....++...
T Consensus 577 q~v~~~~~~r 586 (1394)
T KOG0298|consen 577 QTVDKAYQLR 586 (1394)
T ss_pred HHHHHHHHHH
Confidence 8887777654
No 21
>KOG1000|consensus
Probab=99.70 E-value=1.3e-17 Score=143.62 Aligned_cols=137 Identities=21% Similarity=0.278 Sum_probs=111.7
Q ss_pred CCCccEEEecHHHHHhcHHHhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcC--CcCcEEEEecCCCCC
Q psy13032 36 DASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGF--SCRNRLLLSGTPIQN 113 (190)
Q Consensus 36 ~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l--~~~~r~lLTgTP~~n 113 (190)
....-|+|+||+.+....+.+..-.|.+||+||+|++|+ .++++.+++..+ .+.+.++|||||.-.
T Consensus 284 ~t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~------------sktkr~Ka~~dllk~akhvILLSGTPavS 351 (689)
T KOG1000|consen 284 CTSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKD------------SKTKRTKAATDLLKVAKHVILLSGTPAVS 351 (689)
T ss_pred ccCCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhc------------cchhhhhhhhhHHHHhhheEEecCCcccC
Confidence 345679999999999999999988899999999999999 899999999888 688999999999999
Q ss_pred CHHHHHHHHHhhCCCCCCChHHHHHHHhhhhhhhhh---ccCccchh--hhhhHHHhhcccCCHHHhHHHHHHHHhh
Q psy13032 114 SMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAE---NKTSIDER--EYPIVLMLIYSAHNKAEKSLYSSSRRAS 185 (190)
Q Consensus 114 ~~~el~~ll~fl~p~~~~~~~~F~~~~~~~~~~~~~---~~~~~~~~--~~~~l~~~l~~~~~~~e~~ly~~~~~~~ 185 (190)
++.|||.++..+++-.|.++.+|..+||.--.-+.- ...+..+. .+-.-.-|||+.+.++..+||++ +++.
T Consensus 352 RP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpK-rr~V 427 (689)
T KOG1000|consen 352 RPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPPK-RREV 427 (689)
T ss_pred CchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCcc-ceEE
Confidence 999999999999999999999999999954222111 11111112 23333448999999999999999 5553
No 22
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.11 E-value=1.4e-10 Score=106.20 Aligned_cols=63 Identities=21% Similarity=0.440 Sum_probs=49.7
Q ss_pred CccEEEecHHHHHhc----------HHHhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEe
Q psy13032 38 SFHVVITSYQLVVSD----------FKYFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLS 107 (190)
Q Consensus 38 ~~dvvitsy~~~~~~----------~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLT 107 (190)
..+|+||||+++... .+.+....|++||+||+|++.+ ....+.+..+.+.+|++||
T Consensus 343 ~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA--------------~~fr~il~~l~a~~RLGLT 408 (732)
T TIGR00603 343 EAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA--------------AMFRRVLTIVQAHCKLGLT 408 (732)
T ss_pred CCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH--------------HHHHHHHHhcCcCcEEEEe
Confidence 478999999999642 2344556899999999999943 3344566778899999999
Q ss_pred cCCCCCC
Q psy13032 108 GTPIQNS 114 (190)
Q Consensus 108 gTP~~n~ 114 (190)
|||.+++
T Consensus 409 ATP~ReD 415 (732)
T TIGR00603 409 ATLVRED 415 (732)
T ss_pred ecCcccC
Confidence 9999875
No 23
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=98.65 E-value=6.9e-08 Score=69.36 Aligned_cols=83 Identities=24% Similarity=0.236 Sum_probs=55.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHh--hccCccEEEEcccccccCcccccccchh
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYF--NRIKWQYLILDEAQAIVDINVYSYLNDI 84 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l--~~~~w~~vIvDEaH~lkn~~~~~~~~~~ 84 (190)
...+..+++......... ......+++++||+.+....... ....|+++|+||+|.+.+
T Consensus 57 ~~~~~~~~~~~~~~~~~~---------~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~---------- 117 (144)
T cd00046 57 GIKVGYLIGGTSIKQQEK---------LLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLN---------- 117 (144)
T ss_pred CcEEEEEecCcchhHHHH---------HhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhh----------
Confidence 355666666554433221 11357899999999888754432 345799999999999987
Q ss_pred hhhhhHHH---HHHhcCCcCcEEEEecCC
Q psy13032 85 EREQSMRW---KLLLGFSCRNRLLLSGTP 110 (190)
Q Consensus 85 ~~~~s~~~---~~~~~l~~~~r~lLTgTP 110 (190)
...... ...........+++||||
T Consensus 118 --~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 118 --QGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred --cchHHHHHHHHhhCCccceEEEEeccC
Confidence 333322 334445677899999998
No 24
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=98.49 E-value=4.6e-07 Score=68.93 Aligned_cols=62 Identities=26% Similarity=0.430 Sum_probs=45.8
Q ss_pred CCCccEEEecHHHHHhcHHH-------------hhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCc
Q psy13032 36 DASFHVVITSYQLVVSDFKY-------------FNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRN 102 (190)
Q Consensus 36 ~~~~dvvitsy~~~~~~~~~-------------l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~ 102 (190)
....++++++|+.+...... ...-.+++||+||||++.+ +..++.+.......
T Consensus 109 ~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~~~--------------~~~~~~i~~~~~~~ 174 (184)
T PF04851_consen 109 NNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHHYPS--------------DSSYREIIEFKAAF 174 (184)
T ss_dssp BSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGCTHH--------------HHHHHHHHHSSCCE
T ss_pred cccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhhcCC--------------HHHHHHHHcCCCCe
Confidence 35778999999999875432 2234689999999999954 33266666688889
Q ss_pred EEEEecCCC
Q psy13032 103 RLLLSGTPI 111 (190)
Q Consensus 103 r~lLTgTP~ 111 (190)
+++|||||.
T Consensus 175 ~l~lTATp~ 183 (184)
T PF04851_consen 175 ILGLTATPF 183 (184)
T ss_dssp EEEEESS-S
T ss_pred EEEEEeCcc
Confidence 999999995
No 25
>PRK13766 Hef nuclease; Provisional
Probab=98.42 E-value=1e-06 Score=82.18 Aligned_cols=100 Identities=17% Similarity=0.096 Sum_probs=62.5
Q ss_pred CCeEEEEeCCHHH--HHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHH--HhhccCccEEEEcccccccCcccccccc
Q psy13032 7 DFKVVPYWGSPQE--RKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK--YFNRIKWQYLILDEAQAIVDINVYSYLN 82 (190)
Q Consensus 7 ~l~v~~~~G~~~~--r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~--~l~~~~w~~vIvDEaH~lkn~~~~~~~~ 82 (190)
+.++.++.|.... |..+. ..++|+|+|++.+..+.. .+.--.|++||+||||++.+..
T Consensus 86 ~~~v~~~~g~~~~~~r~~~~------------~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~------ 147 (773)
T PRK13766 86 EEKIVVFTGEVSPEKRAELW------------EKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNY------ 147 (773)
T ss_pred CceEEEEeCCCCHHHHHHHH------------hCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccc------
Confidence 3477888885432 22222 357899999999987542 2223368999999999998622
Q ss_pred hhhhhhhHHHHH-HhcCCcCcEEEEecCCCCCCHHHHHHHHHhhCCCC
Q psy13032 83 DIEREQSMRWKL-LLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSM 129 (190)
Q Consensus 83 ~~~~~~s~~~~~-~~~l~~~~r~lLTgTP~~n~~~el~~ll~fl~p~~ 129 (190)
......+. ...-+....++|||||.++ ...+..++.-|....
T Consensus 148 ----~~~~i~~~~~~~~~~~~il~lTaTP~~~-~~~i~~~~~~L~i~~ 190 (773)
T PRK13766 148 ----AYVYIAERYHEDAKNPLVLGLTASPGSD-EEKIKEVCENLGIEH 190 (773)
T ss_pred ----cHHHHHHHHHhcCCCCEEEEEEcCCCCC-HHHHHHHHHhCCceE
Confidence 11111111 1222456699999999875 566666666665433
No 26
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=98.35 E-value=6.5e-07 Score=78.65 Aligned_cols=74 Identities=20% Similarity=0.260 Sum_probs=51.0
Q ss_pred ccEEEecHHHHHhc--HHHhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCc-EEEEecCCCCCCH
Q psy13032 39 FHVVITSYQLVVSD--FKYFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRN-RLLLSGTPIQNSM 115 (190)
Q Consensus 39 ~dvvitsy~~~~~~--~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~-r~lLTgTP~~n~~ 115 (190)
.+|+|+||+++.+. .+.+..-.|++||+||+|++.. ... ...+..+...+ +++|||||...+-
T Consensus 123 ~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a------------~~~--~~~~~~~~~~~~~LGLTATp~R~D~ 188 (442)
T COG1061 123 AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPA------------PSY--RRILELLSAAYPRLGLTATPEREDG 188 (442)
T ss_pred CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCc------------HHH--HHHHHhhhcccceeeeccCceeecC
Confidence 46999999999986 3444455899999999999965 322 23344455555 9999999986653
Q ss_pred HHHHHHHHhhC
Q psy13032 116 AELWALLHFIM 126 (190)
Q Consensus 116 ~el~~ll~fl~ 126 (190)
.....+..++.
T Consensus 189 ~~~~~l~~~~g 199 (442)
T COG1061 189 GRIGDLFDLIG 199 (442)
T ss_pred CchhHHHHhcC
Confidence 33444444443
No 27
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=98.26 E-value=1.7e-06 Score=65.83 Aligned_cols=65 Identities=25% Similarity=0.230 Sum_probs=47.9
Q ss_pred ccEEEecHHHHHhcHHH--hhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcC-CcCcEEEEecCCCCC
Q psy13032 39 FHVVITSYQLVVSDFKY--FNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGF-SCRNRLLLSGTPIQN 113 (190)
Q Consensus 39 ~dvvitsy~~~~~~~~~--l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l-~~~~r~lLTgTP~~n 113 (190)
.+++++||+.+...... .....++++|+||+|.+.+.. ........+..+ .....+++||||..+
T Consensus 106 ~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~----------~~~~~~~~~~~~~~~~~~v~~saT~~~~ 173 (201)
T smart00487 106 TDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGG----------FGDQLEKLLKLLPKNVQLLLLSATPPEE 173 (201)
T ss_pred CCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCC----------cHHHHHHHHHhCCccceEEEEecCCchh
Confidence 39999999999886655 445578999999999998521 334444444545 577889999999744
No 28
>PHA02558 uvsW UvsW helicase; Provisional
Probab=98.19 E-value=3.6e-06 Score=75.07 Aligned_cols=63 Identities=16% Similarity=0.299 Sum_probs=45.3
Q ss_pred CCccEEEecHHHHHhcHHHhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcC-CcCcEEEEecCCCCCC
Q psy13032 37 ASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGF-SCRNRLLLSGTPIQNS 114 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l-~~~~r~lLTgTP~~n~ 114 (190)
...+|+|+|++.+.+...... -.+++||+||||++.. . .....+..+ +++++++|||||....
T Consensus 200 ~~~~I~VaT~qsl~~~~~~~~-~~~~~iIvDEaH~~~~------------~--~~~~il~~~~~~~~~lGLTATp~~~~ 263 (501)
T PHA02558 200 TDAPIVVSTWQSAVKQPKEWF-DQFGMVIVDECHLFTG------------K--SLTSIITKLDNCKFKFGLTGSLRDGK 263 (501)
T ss_pred CCCCEEEeeHHHHhhchhhhc-cccCEEEEEchhcccc------------h--hHHHHHHhhhccceEEEEeccCCCcc
Confidence 357899999999876543222 2689999999999964 2 123444555 5788999999996543
No 29
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=97.98 E-value=1.9e-05 Score=72.34 Aligned_cols=90 Identities=24% Similarity=0.314 Sum_probs=56.9
Q ss_pred ccCC--CCeEEEEeCCHHH--HHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEcccccccCcccc
Q psy13032 3 RFVP--DFKVVPYWGSPQE--RKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVY 78 (190)
Q Consensus 3 k~~p--~l~v~~~~G~~~~--r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~ 78 (190)
++++ ++++.+++|+... +...... ...+.+||+|+|...+..... + -..++||+||+|++.-
T Consensus 306 ~l~~~~gi~v~lltg~~~~~~r~~~~~~-------i~~g~~~IiVgT~~ll~~~~~-~--~~l~lvVIDEaH~fg~---- 371 (630)
T TIGR00643 306 NLLAPLGIEVALLTGSLKGKRRKELLET-------IASGQIHLVVGTHALIQEKVE-F--KRLALVIIDEQHRFGV---- 371 (630)
T ss_pred HHhcccCcEEEEEecCCCHHHHHHHHHH-------HhCCCCCEEEecHHHHhcccc-c--cccceEEEechhhccH----
Confidence 4554 5889999986533 3323221 124578999999988764322 2 2468999999999843
Q ss_pred cccchhhhhhhHHHHHHhcCC---cCcEEEEecCCCCCCHH
Q psy13032 79 SYLNDIEREQSMRWKLLLGFS---CRNRLLLSGTPIQNSMA 116 (190)
Q Consensus 79 ~~~~~~~~~~s~~~~~~~~l~---~~~r~lLTgTP~~n~~~ 116 (190)
.++........ ..+.+++|+||++..+.
T Consensus 372 ----------~qr~~l~~~~~~~~~~~~l~~SATp~prtl~ 402 (630)
T TIGR00643 372 ----------EQRKKLREKGQGGFTPHVLVMSATPIPRTLA 402 (630)
T ss_pred ----------HHHHHHHHhcccCCCCCEEEEeCCCCcHHHH
Confidence 12222222222 56789999999875543
No 30
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=97.94 E-value=2.4e-05 Score=58.81 Aligned_cols=93 Identities=17% Similarity=0.223 Sum_probs=55.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHH--hhccCccEEEEcccccccCcccccccch
Q psy13032 6 PDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY--FNRIKWQYLILDEAQAIVDINVYSYLND 83 (190)
Q Consensus 6 p~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~--l~~~~w~~vIvDEaH~lkn~~~~~~~~~ 83 (190)
+++++..++|............ ...++|+|+|++.+...... ..-...++||+||+|.+....
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~------- 135 (169)
T PF00270_consen 71 TNVRVVLLHGGQSISEDQREVL--------SNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDET------- 135 (169)
T ss_dssp TTSSEEEESTTSCHHHHHHHHH--------HTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTT-------
T ss_pred cccccccccccccccccccccc--------cccccccccCcchhhccccccccccccceeeccCccccccccc-------
Confidence 3567777777553221111100 24689999999999876553 111337899999999996521
Q ss_pred hhhhhhHHHHHHhcC---CcCcEEEEecCCCCCCHHH
Q psy13032 84 IEREQSMRWKLLLGF---SCRNRLLLSGTPIQNSMAE 117 (190)
Q Consensus 84 ~~~~~s~~~~~~~~l---~~~~r~lLTgTP~~n~~~e 117 (190)
........+..+ .....+++|+||- .+++.
T Consensus 136 ---~~~~~~~i~~~~~~~~~~~~i~~SAT~~-~~~~~ 168 (169)
T PF00270_consen 136 ---FRAMLKSILRRLKRFKNIQIILLSATLP-SNVEK 168 (169)
T ss_dssp ---HHHHHHHHHHHSHTTTTSEEEEEESSST-HHHHH
T ss_pred ---HHHHHHHHHHHhcCCCCCcEEEEeeCCC-hhHhh
Confidence 112222233333 3355899999997 55554
No 31
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=97.84 E-value=3.2e-05 Score=71.46 Aligned_cols=89 Identities=21% Similarity=0.314 Sum_probs=56.0
Q ss_pred ccCC--CCeEEEEeCCHH--HHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEcccccccCcccc
Q psy13032 3 RFVP--DFKVVPYWGSPQ--ERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVY 78 (190)
Q Consensus 3 k~~p--~l~v~~~~G~~~--~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~ 78 (190)
++++ ++++.+++|+.. +++..... ...+.+||+|+|...+..... +. ..++||+||+|++.-
T Consensus 332 ~l~~~~~i~v~ll~G~~~~~~r~~~~~~-------l~~g~~~IvVgT~~ll~~~v~-~~--~l~lvVIDE~Hrfg~---- 397 (681)
T PRK10917 332 KLLEPLGIRVALLTGSLKGKERREILEA-------IASGEADIVIGTHALIQDDVE-FH--NLGLVIIDEQHRFGV---- 397 (681)
T ss_pred HHHhhcCcEEEEEcCCCCHHHHHHHHHH-------HhCCCCCEEEchHHHhcccch-hc--ccceEEEechhhhhH----
Confidence 4454 478899999754 33333321 123578999999988754322 22 467899999999843
Q ss_pred cccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCCH
Q psy13032 79 SYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNSM 115 (190)
Q Consensus 79 ~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~~ 115 (190)
.++......-.....+++|+||++..+
T Consensus 398 ----------~qr~~l~~~~~~~~iL~~SATp~prtl 424 (681)
T PRK10917 398 ----------EQRLALREKGENPHVLVMTATPIPRTL 424 (681)
T ss_pred ----------HHHHHHHhcCCCCCEEEEeCCCCHHHH
Confidence 122222222234678999999986543
No 32
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=97.67 E-value=9.7e-05 Score=68.18 Aligned_cols=62 Identities=23% Similarity=0.152 Sum_probs=41.4
Q ss_pred CccEEEecHHHHHhcHH-HhhccC---c-cEEEEcccccccCcccccccchhhhhhhHHHHHH-hcCCcCcEEEEecCCC
Q psy13032 38 SFHVVITSYQLVVSDFK-YFNRIK---W-QYLILDEAQAIVDINVYSYLNDIEREQSMRWKLL-LGFSCRNRLLLSGTPI 111 (190)
Q Consensus 38 ~~dvvitsy~~~~~~~~-~l~~~~---w-~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~-~~l~~~~r~lLTgTP~ 111 (190)
+.+|+|||+.++.+... .+.... . .+||+||||+... ....+.+ ..++...++++||||.
T Consensus 338 ~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~--------------~~~~~~l~~~~p~a~~lGfTaTP~ 403 (667)
T TIGR00348 338 DGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY--------------GELAKNLKKALKNASFFGFTGTPI 403 (667)
T ss_pred CCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc--------------hHHHHHHHhhCCCCcEEEEeCCCc
Confidence 46899999999986322 222221 2 3899999998742 2233344 3456678999999998
Q ss_pred CC
Q psy13032 112 QN 113 (190)
Q Consensus 112 ~n 113 (190)
..
T Consensus 404 ~~ 405 (667)
T TIGR00348 404 FK 405 (667)
T ss_pred cc
Confidence 53
No 33
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=97.67 E-value=7.6e-05 Score=67.76 Aligned_cols=91 Identities=19% Similarity=0.286 Sum_probs=64.4
Q ss_pred CccCC--CCeEEEEeCCHH--HHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEcccccccCccc
Q psy13032 2 ERFVP--DFKVVPYWGSPQ--ERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINV 77 (190)
Q Consensus 2 ~k~~p--~l~v~~~~G~~~--~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~ 77 (190)
.+|.+ +++|....|+-+ +|+.+... -..+..|+||=|+..+....++ ....+||+||=||+.
T Consensus 332 ~~~l~~~~i~V~lLtG~~kgk~r~~~l~~-------l~~G~~~ivVGTHALiQd~V~F---~~LgLVIiDEQHRFG---- 397 (677)
T COG1200 332 RKWLEPLGIRVALLTGSLKGKARKEILEQ-------LASGEIDIVVGTHALIQDKVEF---HNLGLVIIDEQHRFG---- 397 (677)
T ss_pred HHHhhhcCCeEEEeecccchhHHHHHHHH-------HhCCCCCEEEEcchhhhcceee---cceeEEEEecccccc----
Confidence 45665 688888899653 44444432 2457889999999887654332 145789999999995
Q ss_pred ccccchhhhhhhHHHHHHhcCC-cCcEEEEecCCCCCCHH
Q psy13032 78 YSYLNDIEREQSMRWKLLLGFS-CRNRLLLSGTPIQNSMA 116 (190)
Q Consensus 78 ~~~~~~~~~~~s~~~~~~~~l~-~~~r~lLTgTP~~n~~~ 116 (190)
..++.+....=. .++.+.||+||++..+.
T Consensus 398 ----------V~QR~~L~~KG~~~Ph~LvMTATPIPRTLA 427 (677)
T COG1200 398 ----------VHQRLALREKGEQNPHVLVMTATPIPRTLA 427 (677)
T ss_pred ----------HHHHHHHHHhCCCCCcEEEEeCCCchHHHH
Confidence 444444444445 68999999999999876
No 34
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=97.61 E-value=0.00021 Score=55.58 Aligned_cols=86 Identities=26% Similarity=0.371 Sum_probs=52.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHH--hhccCccEEEEcccccccCcccccccchh
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY--FNRIKWQYLILDEAQAIVDINVYSYLNDI 84 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~--l~~~~w~~vIvDEaH~lkn~~~~~~~~~~ 84 (190)
+.++..++|........... ...++|+|+|.+.+...... +.--..+++|+||+|.+.+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~---------~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~-------- 159 (203)
T cd00268 97 NLKVVVIYGGTSIDKQIRKL---------KRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMG-------- 159 (203)
T ss_pred CceEEEEECCCCHHHHHHHh---------cCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccC--------
Confidence 56677777765543332211 14689999998877553221 111257899999999986521
Q ss_pred hhhhhHHHHHHhcCC-cCcEEEEecCCC
Q psy13032 85 EREQSMRWKLLLGFS-CRNRLLLSGTPI 111 (190)
Q Consensus 85 ~~~~s~~~~~~~~l~-~~~r~lLTgTP~ 111 (190)
........+..+. ....+++|+||-
T Consensus 160 --~~~~~~~~~~~l~~~~~~~~~SAT~~ 185 (203)
T cd00268 160 --FEDQIREILKLLPKDRQTLLFSATMP 185 (203)
T ss_pred --hHHHHHHHHHhCCcccEEEEEeccCC
Confidence 2222333344444 456899999997
No 35
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.58 E-value=0.0002 Score=63.39 Aligned_cols=88 Identities=14% Similarity=0.149 Sum_probs=55.5
Q ss_pred CCCccEEEecHHHHHhcHHH---h-hccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCC
Q psy13032 36 DASFHVVITSYQLVVSDFKY---F-NRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPI 111 (190)
Q Consensus 36 ~~~~dvvitsy~~~~~~~~~---l-~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~ 111 (190)
.+.++++++|.+.+...... + .....++||+||||.+..+... ....-.........+.....++|||||-
T Consensus 99 ~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~-----fr~~~~~l~~l~~~~~~~~~l~lTAT~~ 173 (470)
T TIGR00614 99 DGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHD-----FRPDYKALGSLKQKFPNVPIMALTATAS 173 (470)
T ss_pred cCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccc-----cHHHHHHHHHHHHHcCCCceEEEecCCC
Confidence 46789999999998764422 2 3447899999999998653210 0001112222223344556899999998
Q ss_pred CCCHHHHHHHHHhhCCC
Q psy13032 112 QNSMAELWALLHFIMPS 128 (190)
Q Consensus 112 ~n~~~el~~ll~fl~p~ 128 (190)
.....++...+.+-.|.
T Consensus 174 ~~~~~di~~~l~l~~~~ 190 (470)
T TIGR00614 174 PSVREDILRQLNLKNPQ 190 (470)
T ss_pred HHHHHHHHHHcCCCCCc
Confidence 77777777666544443
No 36
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=97.57 E-value=0.00018 Score=63.24 Aligned_cols=99 Identities=23% Similarity=0.229 Sum_probs=64.7
Q ss_pred CCCeEEEEeCC--HHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHH--hhccCccEEEEcccccccCccccccc
Q psy13032 6 PDFKVVPYWGS--PQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY--FNRIKWQYLILDEAQAIVDINVYSYL 81 (190)
Q Consensus 6 p~l~v~~~~G~--~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~--l~~~~w~~vIvDEaH~lkn~~~~~~~ 81 (190)
|.-.+..+.|. +.+|.... .+..|++.|..++.+|... +.--.+.++|+|||||.-...
T Consensus 85 p~~~i~~ltGev~p~~R~~~w------------~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGny----- 147 (542)
T COG1111 85 PEDEIAALTGEVRPEEREELW------------AKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNY----- 147 (542)
T ss_pred ChhheeeecCCCChHHHHHHH------------hhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcc-----
Confidence 55667788884 34444333 4568999999999987542 223367899999999986632
Q ss_pred chhhhhhhHHHHHHhcCC-cCcEEEEecCCCCCCHHHHHHHHHhhCC
Q psy13032 82 NDIEREQSMRWKLLLGFS-CRNRLLLSGTPIQNSMAELWALLHFIMP 127 (190)
Q Consensus 82 ~~~~~~~s~~~~~~~~l~-~~~r~lLTgTP~~n~~~el~~ll~fl~p 127 (190)
......+....-+ ..+.++||+||= ++.+.+...++=|.-
T Consensus 148 -----AYv~Va~~y~~~~k~~~ilgLTASPG-s~~ekI~eV~~nLgI 188 (542)
T COG1111 148 -----AYVFVAKEYLRSAKNPLILGLTASPG-SDLEKIQEVVENLGI 188 (542)
T ss_pred -----hHHHHHHHHHHhccCceEEEEecCCC-CCHHHHHHHHHhCCc
Confidence 3444444333333 346899999994 566666666665543
No 37
>KOG1123|consensus
Probab=97.57 E-value=3.8e-05 Score=67.66 Aligned_cols=77 Identities=23% Similarity=0.508 Sum_probs=59.8
Q ss_pred CCCccEEEecHHHHHh----------cHHHhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEE
Q psy13032 36 DASFHVVITSYQLVVS----------DFKYFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLL 105 (190)
Q Consensus 36 ~~~~dvvitsy~~~~~----------~~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~l 105 (190)
...++||||||.++.. -.+.+....|.++|+||.|-+ +.....+.+.-+.+..+++
T Consensus 388 ~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvv--------------PA~MFRRVlsiv~aHcKLG 453 (776)
T KOG1123|consen 388 PSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVV--------------PAKMFRRVLSIVQAHCKLG 453 (776)
T ss_pred CCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccc--------------hHHHHHHHHHHHHHHhhcc
Confidence 4667899999999964 234677889999999999998 7777777777778888999
Q ss_pred EecCCCCC--CHHHHHHHHHhhC-CCCC
Q psy13032 106 LSGTPIQN--SMAELWALLHFIM-PSMF 130 (190)
Q Consensus 106 LTgTP~~n--~~~el~~ll~fl~-p~~~ 130 (190)
||+|-+.. ++.| |+||. |.++
T Consensus 454 LTATLvREDdKI~D----LNFLIGPKlY 477 (776)
T KOG1123|consen 454 LTATLVREDDKITD----LNFLIGPKLY 477 (776)
T ss_pred ceeEEeeccccccc----cceeecchhh
Confidence 99999875 4555 46665 5443
No 38
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=97.50 E-value=0.00022 Score=69.22 Aligned_cols=78 Identities=15% Similarity=0.207 Sum_probs=43.5
Q ss_pred CCccEEEecHHHHHhcHHH-------hhccCccEEEEcccccccCcccccccchhhh----hhhHHHHHHhcCCcCcEEE
Q psy13032 37 ASFHVVITSYQLVVSDFKY-------FNRIKWQYLILDEAQAIVDINVYSYLNDIER----EQSMRWKLLLGFSCRNRLL 105 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~~~-------l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~----~~s~~~~~~~~l~~~~r~l 105 (190)
....|+|+||.++.+.... +.--.+|+||+||||+.-..+.......+.. ..-..++.+...-...+++
T Consensus 510 ~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yFdA~~IG 589 (1123)
T PRK11448 510 DETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYFDAVKIG 589 (1123)
T ss_pred CCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccchhhhHHHHHHHHHhhcCccEEE
Confidence 3578999999998764321 1223589999999999632110000000000 0012334433322247899
Q ss_pred EecCCCCCC
Q psy13032 106 LSGTPIQNS 114 (190)
Q Consensus 106 LTgTP~~n~ 114 (190)
|||||..+.
T Consensus 590 LTATP~r~t 598 (1123)
T PRK11448 590 LTATPALHT 598 (1123)
T ss_pred EecCCccch
Confidence 999998654
No 39
>PRK10689 transcription-repair coupling factor; Provisional
Probab=97.40 E-value=0.0003 Score=68.41 Aligned_cols=84 Identities=19% Similarity=0.256 Sum_probs=52.5
Q ss_pred CeEEEEeC--CHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEcccccccCcccccccchhh
Q psy13032 8 FKVVPYWG--SPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYSYLNDIE 85 (190)
Q Consensus 8 l~v~~~~G--~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~ 85 (190)
+++.++.| +.+++..+... ...+..||||+|++.+..... + -..+++|+||+|++..
T Consensus 678 v~i~~l~g~~s~~e~~~il~~-------l~~g~~dIVVgTp~lL~~~v~-~--~~L~lLVIDEahrfG~----------- 736 (1147)
T PRK10689 678 VRIEMLSRFRSAKEQTQILAE-------AAEGKIDILIGTHKLLQSDVK-W--KDLGLLIVDEEHRFGV----------- 736 (1147)
T ss_pred ceEEEEECCCCHHHHHHHHHH-------HHhCCCCEEEECHHHHhCCCC-H--hhCCEEEEechhhcch-----------
Confidence 56655655 34444433321 123568999999987764322 1 2578999999999953
Q ss_pred hhhhHHHHHHhcCC-cCcEEEEecCCCCCCHH
Q psy13032 86 REQSMRWKLLLGFS-CRNRLLLSGTPIQNSMA 116 (190)
Q Consensus 86 ~~~s~~~~~~~~l~-~~~r~lLTgTP~~n~~~ 116 (190)
.. ...+..+. ....+++||||++..+.
T Consensus 737 -~~---~e~lk~l~~~~qvLl~SATpiprtl~ 764 (1147)
T PRK10689 737 -RH---KERIKAMRADVDILTLTATPIPRTLN 764 (1147)
T ss_pred -hH---HHHHHhcCCCCcEEEEcCCCCHHHHH
Confidence 22 12234443 45789999999876543
No 40
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=97.37 E-value=0.00075 Score=58.98 Aligned_cols=94 Identities=16% Similarity=0.144 Sum_probs=53.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHH--HhhccCccEEEEcccccccCcccccccchh
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK--YFNRIKWQYLILDEAQAIVDINVYSYLNDI 84 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~--~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~ 84 (190)
++++..+.|.......... -.+.+||+|+|.+.+..... .+..-..++||+||||++-...
T Consensus 101 ~~~v~~~~gg~~~~~~~~~---------l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~-------- 163 (434)
T PRK11192 101 HLDIATITGGVAYMNHAEV---------FSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMG-------- 163 (434)
T ss_pred CcEEEEEECCCCHHHHHHH---------hcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCC--------
Confidence 4667777765433221111 12467999999998875332 1222356789999999986521
Q ss_pred hhhhhHHHHHHhcCC-cCcEEEEecCCCCCCHHHHH
Q psy13032 85 EREQSMRWKLLLGFS-CRNRLLLSGTPIQNSMAELW 119 (190)
Q Consensus 85 ~~~~s~~~~~~~~l~-~~~r~lLTgTP~~n~~~el~ 119 (190)
-.......+..+. ....+++|+|+-...+.++.
T Consensus 164 --~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~ 197 (434)
T PRK11192 164 --FAQDIETIAAETRWRKQTLLFSATLEGDAVQDFA 197 (434)
T ss_pred --cHHHHHHHHHhCccccEEEEEEeecCHHHHHHHH
Confidence 1122222223332 34568999998654455543
No 41
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=97.36 E-value=0.00053 Score=65.42 Aligned_cols=85 Identities=22% Similarity=0.256 Sum_probs=52.3
Q ss_pred CCeEEEEeCCH--HHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEcccccccCcccccccchh
Q psy13032 7 DFKVVPYWGSP--QERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYSYLNDI 84 (190)
Q Consensus 7 ~l~v~~~~G~~--~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~ 84 (190)
++++..++|.. .+++...+.+ ..+.+||||+|...+.+... + -...++|+||+|++..
T Consensus 528 ~i~v~~Lsg~~~~~e~~~~~~~l-------~~g~~dIVIGTp~ll~~~v~-f--~~L~llVIDEahrfgv---------- 587 (926)
T TIGR00580 528 PVTIELLSRFRSAKEQNEILKEL-------ASGKIDILIGTHKLLQKDVK-F--KDLGLLIIDEEQRFGV---------- 587 (926)
T ss_pred CcEEEEEeccccHHHHHHHHHHH-------HcCCceEEEchHHHhhCCCC-c--ccCCEEEeecccccch----------
Confidence 45677777643 3333333211 23578999999977654321 2 2457999999999853
Q ss_pred hhhhhHHHHHHhcC-CcCcEEEEecCCCCCCHH
Q psy13032 85 EREQSMRWKLLLGF-SCRNRLLLSGTPIQNSMA 116 (190)
Q Consensus 85 ~~~~s~~~~~~~~l-~~~~r~lLTgTP~~n~~~ 116 (190)
.. ...+..+ .....+++||||++..+.
T Consensus 588 --~~---~~~L~~~~~~~~vL~~SATpiprtl~ 615 (926)
T TIGR00580 588 --KQ---KEKLKELRTSVDVLTLSATPIPRTLH 615 (926)
T ss_pred --hH---HHHHHhcCCCCCEEEEecCCCHHHHH
Confidence 21 1233344 345789999999875543
No 42
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=97.18 E-value=0.0011 Score=58.47 Aligned_cols=87 Identities=20% Similarity=0.284 Sum_probs=53.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHH--hhccCccEEEEcccccccCcccccccch
Q psy13032 6 PDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY--FNRIKWQYLILDEAQAIVDINVYSYLND 83 (190)
Q Consensus 6 p~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~--l~~~~w~~vIvDEaH~lkn~~~~~~~~~ 83 (190)
+++++..+.|........... ...++|+|+|.+.+...... +.--.++++|+||||++-+..
T Consensus 100 ~~~~v~~~~Gg~~~~~~~~~l---------~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g------- 163 (460)
T PRK11776 100 PNIKVLTLCGGVPMGPQIDSL---------EHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMG------- 163 (460)
T ss_pred CCcEEEEEECCCChHHHHHHh---------cCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcC-------
Confidence 567888777765443332221 14679999999988754321 111257899999999986521
Q ss_pred hhhhhhHHHHHHhcCC-cCcEEEEecCCC
Q psy13032 84 IEREQSMRWKLLLGFS-CRNRLLLSGTPI 111 (190)
Q Consensus 84 ~~~~~s~~~~~~~~l~-~~~r~lLTgTP~ 111 (190)
-.......+..+. ....+++|+|+-
T Consensus 164 ---~~~~l~~i~~~~~~~~q~ll~SAT~~ 189 (460)
T PRK11776 164 ---FQDAIDAIIRQAPARRQTLLFSATYP 189 (460)
T ss_pred ---cHHHHHHHHHhCCcccEEEEEEecCc
Confidence 1223333444443 345799999984
No 43
>PRK13767 ATP-dependent helicase; Provisional
Probab=97.16 E-value=0.0022 Score=61.12 Aligned_cols=93 Identities=17% Similarity=0.203 Sum_probs=53.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcH------HHhhccCccEEEEcccccccCccccc
Q psy13032 6 PDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDF------KYFNRIKWQYLILDEAQAIVDINVYS 79 (190)
Q Consensus 6 p~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~------~~l~~~~w~~vIvDEaH~lkn~~~~~ 79 (190)
|++++.+.+|+.......... ...+||+|||.+.+.... ..+. ..++||+||+|.+-+...+
T Consensus 123 ~~i~v~v~~Gdt~~~~r~~~l---------~~~p~IlVtTPE~L~~ll~~~~~~~~l~--~l~~VVIDE~H~l~~~~RG- 190 (876)
T PRK13767 123 PEIRVAIRTGDTSSYEKQKML---------KKPPHILITTPESLAILLNSPKFREKLR--TVKWVIVDEIHSLAENKRG- 190 (876)
T ss_pred CCeeEEEEcCCCCHHHHHHHH---------hCCCCEEEecHHHHHHHhcChhHHHHHh--cCCEEEEechhhhccCccH-
Confidence 477899999975433222110 135799999999885321 1122 4578999999999752100
Q ss_pred ccchhhhhhhHHHHHHhcC--CcCcEEEEecCCCCCCHHHH
Q psy13032 80 YLNDIEREQSMRWKLLLGF--SCRNRLLLSGTPIQNSMAEL 118 (190)
Q Consensus 80 ~~~~~~~~~s~~~~~~~~l--~~~~r~lLTgTP~~n~~~el 118 (190)
..-......+..+ ....++++|+|.- ++.++
T Consensus 191 ------~~l~~~L~rL~~l~~~~~q~IglSATl~--~~~~v 223 (876)
T PRK13767 191 ------VHLSLSLERLEELAGGEFVRIGLSATIE--PLEEV 223 (876)
T ss_pred ------HHHHHHHHHHHHhcCCCCeEEEEecccC--CHHHH
Confidence 0111112222233 2456899999973 34544
No 44
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=97.15 E-value=0.0026 Score=57.98 Aligned_cols=87 Identities=16% Similarity=0.189 Sum_probs=55.6
Q ss_pred CCCccEEEecHHHHHhc--HHHhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCC
Q psy13032 36 DASFHVVITSYQLVVSD--FKYFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQN 113 (190)
Q Consensus 36 ~~~~dvvitsy~~~~~~--~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n 113 (190)
.+..+++++|.+.+... ...+.....++||+||||.+..+...- ...-.........+.....+++|+|+-..
T Consensus 101 ~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~f-----rp~y~~l~~l~~~~~~~~vi~lTAT~~~~ 175 (591)
T TIGR01389 101 NGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDF-----RPEYQRLGSLAERFPQVPRIALTATADAE 175 (591)
T ss_pred CCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCcc-----HHHHHHHHHHHHhCCCCCEEEEEeCCCHH
Confidence 35789999999988642 234556788999999999986532100 00112222333334444589999999888
Q ss_pred CHHHHHHHHHhhCC
Q psy13032 114 SMAELWALLHFIMP 127 (190)
Q Consensus 114 ~~~el~~ll~fl~p 127 (190)
...++...+.+-.+
T Consensus 176 ~~~~i~~~l~~~~~ 189 (591)
T TIGR01389 176 TRQDIRELLRLADA 189 (591)
T ss_pred HHHHHHHHcCCCCC
Confidence 77777776654333
No 45
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.11 E-value=0.00085 Score=55.95 Aligned_cols=97 Identities=15% Similarity=0.227 Sum_probs=55.2
Q ss_pred CCccEEEecHHHHHhcHH-------Hhhc---c---Ccc-EEEEcccccccCcccccccchhhhhhhHHHHHHhcC----
Q psy13032 37 ASFHVVITSYQLVVSDFK-------YFNR---I---KWQ-YLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGF---- 98 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~~-------~l~~---~---~w~-~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l---- 98 (190)
-+.+|+.+||.++..... -+.+ + .+| +||+||+|+.||..... ...|+...++..|
T Consensus 135 ~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~------~~~sk~g~avl~LQ~~L 208 (303)
T PF13872_consen 135 LKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGS------KKPSKTGIAVLELQNRL 208 (303)
T ss_pred CCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccC------ccccHHHHHHHHHHHhC
Confidence 356799999999987632 1222 1 234 78899999999964322 1334555554444
Q ss_pred CcCcEEEEecCCCCCCHHHHHHHHHh--hCC-CCCCChHHHHHHH
Q psy13032 99 SCRNRLLLSGTPIQNSMAELWALLHF--IMP-SMFDSHDEFNEWF 140 (190)
Q Consensus 99 ~~~~r~lLTgTP~~n~~~el~~ll~f--l~p-~~~~~~~~F~~~~ 140 (190)
+.-+.+-.|+|... .+.+|--+.++ -.+ .+|.++.+|...+
T Consensus 209 P~ARvvY~SATgas-ep~NmaYm~RLGLWG~gtpf~~~~~f~~a~ 252 (303)
T PF13872_consen 209 PNARVVYASATGAS-EPRNMAYMSRLGLWGPGTPFPDFDDFLEAM 252 (303)
T ss_pred CCCcEEEecccccC-CCceeeeeeeccccCCCCCCCCHHHHHHHH
Confidence 33457789999874 34443222221 011 1355556665544
No 46
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=97.11 E-value=0.0012 Score=62.51 Aligned_cols=88 Identities=15% Similarity=0.139 Sum_probs=55.0
Q ss_pred CCeEEEEeCCHHH-HH-HHHHHhhhhcccCCCCCccEEEecHHHHHhcH------HHhhccCccEEEEcccccccCcccc
Q psy13032 7 DFKVVPYWGSPQE-RK-ILRQFWDMKNLHTKDASFHVVITSYQLVVSDF------KYFNRIKWQYLILDEAQAIVDINVY 78 (190)
Q Consensus 7 ~l~v~~~~G~~~~-r~-~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~------~~l~~~~w~~vIvDEaH~lkn~~~~ 78 (190)
.+++..|.|+... ++ .+.. +.+||++|||+++-... .....-.+.+|||||+|..+..
T Consensus 145 ~v~~~~y~Gdt~~~~r~~~~~-----------~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv--- 210 (851)
T COG1205 145 KVTFGRYTGDTPPEERRAIIR-----------NPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGV--- 210 (851)
T ss_pred cceeeeecCCCChHHHHHHHh-----------CCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecccc---
Confidence 5788899996532 22 3332 67899999999986511 1111224899999999998873
Q ss_pred cccchhhhhhhHHHHHHhcC----C----cCcEEEEecCCCCCCHHHH
Q psy13032 79 SYLNDIEREQSMRWKLLLGF----S----CRNRLLLSGTPIQNSMAEL 118 (190)
Q Consensus 79 ~~~~~~~~~~s~~~~~~~~l----~----~~~r~lLTgTP~~n~~~el 118 (190)
..|..+-.+++| + ....++.|+|- .++.|+
T Consensus 211 --------~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~--~np~e~ 248 (851)
T COG1205 211 --------QGSEVALLLRRLLRRLRRYGSPLQIICTSATL--ANPGEF 248 (851)
T ss_pred --------chhHHHHHHHHHHHHHhccCCCceEEEEeccc--cChHHH
Confidence 444444444444 1 23457788875 344443
No 47
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=97.09 E-value=0.0018 Score=57.11 Aligned_cols=65 Identities=20% Similarity=0.208 Sum_probs=41.3
Q ss_pred CCccEEEecHHHHHhcHH--HhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCc-CcEEEEecCCC
Q psy13032 37 ASFHVVITSYQLVVSDFK--YFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSC-RNRLLLSGTPI 111 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~~--~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~-~~r~lLTgTP~ 111 (190)
+.+||+|+|.+.+..... .+.--..+++|+||||++-... -.......+..+.. ...+++|+|+-
T Consensus 124 ~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~----------~~~~i~~il~~l~~~~q~l~~SAT~~ 191 (456)
T PRK10590 124 GGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMG----------FIHDIRRVLAKLPAKRQNLLFSATFS 191 (456)
T ss_pred CCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccc----------cHHHHHHHHHhCCccCeEEEEeCCCc
Confidence 568999999998865322 1112256899999999986521 11222333444543 35799999974
No 48
>COG1204 Superfamily II helicase [General function prediction only]
Probab=97.08 E-value=0.00088 Score=62.70 Aligned_cols=101 Identities=14% Similarity=0.035 Sum_probs=61.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHh--hccCccEEEEcccccccCcccccccchh
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYF--NRIKWQYLILDEAQAIVDINVYSYLNDI 84 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l--~~~~w~~vIvDEaH~lkn~~~~~~~~~~ 84 (190)
+++|.+++|+..... ....++||+|||||.+-.-.... .-...++||+||+|.+.....+-.
T Consensus 103 GirV~~~TgD~~~~~------------~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~---- 166 (766)
T COG1204 103 GIRVGISTGDYDLDD------------ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPV---- 166 (766)
T ss_pred CCEEEEecCCcccch------------hhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCce----
Confidence 789999999876443 23478999999999875321111 112468999999999987311100
Q ss_pred hhhhhHHHHHHhcCCcCcEEEEecCCCCCCHHHHHHHHHhhCCCCC
Q psy13032 85 EREQSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMF 130 (190)
Q Consensus 85 ~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~~~el~~ll~fl~p~~~ 130 (190)
-.+-.++....-..-+.++||+|- .|..|+ =.||+....
T Consensus 167 --lE~iv~r~~~~~~~~rivgLSATl--pN~~ev---A~wL~a~~~ 205 (766)
T COG1204 167 --LESIVARMRRLNELIRIVGLSATL--PNAEEV---ADWLNAKLV 205 (766)
T ss_pred --ehhHHHHHHhhCcceEEEEEeeec--CCHHHH---HHHhCCccc
Confidence 112222222222224678999996 466665 455665544
No 49
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.07 E-value=0.00022 Score=66.00 Aligned_cols=61 Identities=18% Similarity=0.275 Sum_probs=41.5
Q ss_pred CCccEEEecHHHHHhcHHHh-------hccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecC
Q psy13032 37 ASFHVVITSYQLVVSDFKYF-------NRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGT 109 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~~~l-------~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgT 109 (190)
+++.|+|.||.++......- .--.||+||+|||||= .-+.++.+..--.-.+.+||+|
T Consensus 255 ~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg---------------i~~~~~~I~dYFdA~~~gLTAT 319 (875)
T COG4096 255 TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG---------------IYSEWSSILDYFDAATQGLTAT 319 (875)
T ss_pred cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh---------------HHhhhHHHHHHHHHHHHhhccC
Confidence 46799999999998744322 2235899999999973 3333334433334456777999
Q ss_pred CCC
Q psy13032 110 PIQ 112 (190)
Q Consensus 110 P~~ 112 (190)
|-.
T Consensus 320 P~~ 322 (875)
T COG4096 320 PKE 322 (875)
T ss_pred ccc
Confidence 977
No 50
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=97.06 E-value=0.0016 Score=59.56 Aligned_cols=87 Identities=16% Similarity=0.129 Sum_probs=54.0
Q ss_pred CCCccEEEecHHHHHhc--HHHhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCC
Q psy13032 36 DASFHVVITSYQLVVSD--FKYFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQN 113 (190)
Q Consensus 36 ~~~~dvvitsy~~~~~~--~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n 113 (190)
.++.+++++|.+.+... .+.+.....++||+||||.+..+...-. ..-.........+.....+++|||+-..
T Consensus 113 ~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr-----~~y~~L~~l~~~~p~~~~v~lTAT~~~~ 187 (607)
T PRK11057 113 TGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFR-----PEYAALGQLRQRFPTLPFMALTATADDT 187 (607)
T ss_pred CCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCccc-----HHHHHHHHHHHhCCCCcEEEEecCCChh
Confidence 35688999999988642 2344556789999999999865321000 0001111222233455689999999887
Q ss_pred CHHHHHHHHHhhCC
Q psy13032 114 SMAELWALLHFIMP 127 (190)
Q Consensus 114 ~~~el~~ll~fl~p 127 (190)
...++...+.+-+|
T Consensus 188 ~~~di~~~l~l~~~ 201 (607)
T PRK11057 188 TRQDIVRLLGLNDP 201 (607)
T ss_pred HHHHHHHHhCCCCe
Confidence 77777776654444
No 51
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=97.04 E-value=0.00091 Score=50.05 Aligned_cols=63 Identities=13% Similarity=0.058 Sum_probs=35.4
Q ss_pred CCCccEEEecHHHHHhcH-HHhhccCccEEEEcccccccCcccccccchhhhhhhHHHHH-HhcC---CcCcEEEEecCC
Q psy13032 36 DASFHVVITSYQLVVSDF-KYFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKL-LLGF---SCRNRLLLSGTP 110 (190)
Q Consensus 36 ~~~~dvvitsy~~~~~~~-~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~-~~~l---~~~~r~lLTgTP 110 (190)
.+..-|-+++|.++.... .......|++||+||+|-.- +.|....- +..+ .....+++|+||
T Consensus 70 ~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~D-------------p~sIA~rg~l~~~~~~g~~~~i~mTATP 136 (148)
T PF07652_consen 70 FGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTD-------------PTSIAARGYLRELAESGEAKVIFMTATP 136 (148)
T ss_dssp -SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--S-------------HHHHHHHHHHHHHHHTTS-EEEEEESS-
T ss_pred cCCCcccccccHHHHHHhcCcccccCccEEEEeccccCC-------------HHHHhhheeHHHhhhccCeeEEEEeCCC
Confidence 355668888999876532 22234579999999999852 33332222 2222 123578999999
Q ss_pred C
Q psy13032 111 I 111 (190)
Q Consensus 111 ~ 111 (190)
-
T Consensus 137 P 137 (148)
T PF07652_consen 137 P 137 (148)
T ss_dssp T
T ss_pred C
Confidence 4
No 52
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=97.03 E-value=0.0022 Score=63.65 Aligned_cols=92 Identities=16% Similarity=0.163 Sum_probs=55.3
Q ss_pred CCCeEEEEeCCHHHHH--HHHHHhhhhcccCCCCCccEEEecHHHHHhcH-----HHhhccCccEEEEcccccccCcccc
Q psy13032 6 PDFKVVPYWGSPQERK--ILRQFWDMKNLHTKDASFHVVITSYQLVVSDF-----KYFNRIKWQYLILDEAQAIVDINVY 78 (190)
Q Consensus 6 p~l~v~~~~G~~~~r~--~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~-----~~l~~~~w~~vIvDEaH~lkn~~~~ 78 (190)
++++|.+++|+..... .+.. ..+||+|||.|.+.... ..+. ..++|||||+|.+.+...+
T Consensus 76 ~~i~V~vrtGDt~~~eR~rll~-----------~ppdILVTTPEsL~~LLtsk~r~~L~--~Vr~VIVDE~H~L~g~kRG 142 (1490)
T PRK09751 76 VNLRVGIRTGDTPAQERSKLTR-----------NPPDILITTPESLYLMLTSRARETLR--GVETVIIDEVHAVAGSKRG 142 (1490)
T ss_pred CceEEEEEECCCCHHHHHHHhc-----------CCCCEEEecHHHHHHHHhhhhhhhhc--cCCEEEEecHHHhcccccc
Confidence 5789999999754332 2221 35799999999886422 1222 4578999999999762100
Q ss_pred cccchhhhhhhHHHHHHhcC--CcCcEEEEecCCCCCCHHHHH
Q psy13032 79 SYLNDIEREQSMRWKLLLGF--SCRNRLLLSGTPIQNSMAELW 119 (190)
Q Consensus 79 ~~~~~~~~~~s~~~~~~~~l--~~~~r~lLTgTP~~n~~~el~ 119 (190)
.+-......+..+ ....+++||+|-- +++++-
T Consensus 143 -------~~Lel~LeRL~~l~~~~~QrIgLSATI~--n~eevA 176 (1490)
T PRK09751 143 -------AHLALSLERLDALLHTSAQRIGLSATVR--SASDVA 176 (1490)
T ss_pred -------cHHHHHHHHHHHhCCCCCeEEEEEeeCC--CHHHHH
Confidence 0111122222222 2346899999973 466653
No 53
>KOG0354|consensus
Probab=97.02 E-value=0.0015 Score=60.19 Aligned_cols=81 Identities=16% Similarity=0.179 Sum_probs=57.9
Q ss_pred CCccEEEecHHHHHhcHHHhhcc---CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCC--cCcEEEEecCCC
Q psy13032 37 ASFHVVITSYQLVVSDFKYFNRI---KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFS--CRNRLLLSGTPI 111 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~~~l~~~---~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~--~~~r~lLTgTP~ 111 (190)
...+|.+.|-.++.++...-..- .|-++|+||||+-...+ +.+...+....++ ..+.++|||||=
T Consensus 153 ~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~----------~Y~~Vmr~~l~~k~~~~qILgLTASpG 222 (746)
T KOG0354|consen 153 ASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNH----------PYNNIMREYLDLKNQGNQILGLTASPG 222 (746)
T ss_pred cccceEEeChHhhhhhcccccccccceEEEEEEcccccccccc----------cHHHHHHHHHHhhhccccEEEEecCCC
Confidence 46789999999999876544333 38899999999876543 5666666666653 336799999997
Q ss_pred CCCHHHHHHHHHhhCCC
Q psy13032 112 QNSMAELWALLHFIMPS 128 (190)
Q Consensus 112 ~n~~~el~~ll~fl~p~ 128 (190)
++.++....++=|.-.
T Consensus 223 -~~~~~v~~~I~~L~as 238 (746)
T KOG0354|consen 223 -SKLEQVQNVIDNLCAS 238 (746)
T ss_pred -ccHHHHHHHHHhhhee
Confidence 6777666655544444
No 54
>PRK00254 ski2-like helicase; Provisional
Probab=97.01 E-value=0.0034 Score=58.57 Aligned_cols=88 Identities=16% Similarity=0.120 Sum_probs=52.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHH----HhhccCccEEEEcccccccCcccccccc
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK----YFNRIKWQYLILDEAQAIVDINVYSYLN 82 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~----~l~~~~w~~vIvDEaH~lkn~~~~~~~~ 82 (190)
+++|..++|....... ..+.+||+|+|++.+..... .+. ..++||+||+|.+.+..
T Consensus 95 g~~v~~~~Gd~~~~~~------------~~~~~~IiV~Tpe~~~~ll~~~~~~l~--~l~lvViDE~H~l~~~~------ 154 (720)
T PRK00254 95 GLRVAMTTGDYDSTDE------------WLGKYDIIIATAEKFDSLLRHGSSWIK--DVKLVVADEIHLIGSYD------ 154 (720)
T ss_pred CCEEEEEeCCCCCchh------------hhccCCEEEEcHHHHHHHHhCCchhhh--cCCEEEEcCcCccCCcc------
Confidence 5677777776432211 12468999999987754221 222 46899999999996521
Q ss_pred hhhhhhhHHHHHHhcC-CcCcEEEEecCCCCCCHHHHHH
Q psy13032 83 DIEREQSMRWKLLLGF-SCRNRLLLSGTPIQNSMAELWA 120 (190)
Q Consensus 83 ~~~~~~s~~~~~~~~l-~~~~r~lLTgTP~~n~~~el~~ 120 (190)
........+..+ .....++||+|.- +..++-.
T Consensus 155 ----rg~~le~il~~l~~~~qiI~lSATl~--n~~~la~ 187 (720)
T PRK00254 155 ----RGATLEMILTHMLGRAQILGLSATVG--NAEELAE 187 (720)
T ss_pred ----chHHHHHHHHhcCcCCcEEEEEccCC--CHHHHHH
Confidence 122223333344 3456799999983 3566543
No 55
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=96.96 E-value=0.0028 Score=58.24 Aligned_cols=87 Identities=18% Similarity=0.225 Sum_probs=52.4
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHH--hhccCccEEEEcccccccCcccccccc
Q psy13032 5 VPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY--FNRIKWQYLILDEAQAIVDINVYSYLN 82 (190)
Q Consensus 5 ~p~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~--l~~~~w~~vIvDEaH~lkn~~~~~~~~ 82 (190)
.++++++.++|.......+... ...++|||+|.+.+...... +.--...+||+||||.+-+..
T Consensus 101 ~~~i~v~~~~gG~~~~~q~~~l---------~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~g------ 165 (629)
T PRK11634 101 MRGVNVVALYGGQRYDVQLRAL---------RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMG------ 165 (629)
T ss_pred cCCceEEEEECCcCHHHHHHHh---------cCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcc------
Confidence 4678888777765333322211 23579999999888653321 111246789999999886521
Q ss_pred hhhhhhhHHHHHHhcCCc-CcEEEEecCC
Q psy13032 83 DIEREQSMRWKLLLGFSC-RNRLLLSGTP 110 (190)
Q Consensus 83 ~~~~~~s~~~~~~~~l~~-~~r~lLTgTP 110 (190)
-.......+..+.. ...+++|+|.
T Consensus 166 ----f~~di~~Il~~lp~~~q~llfSAT~ 190 (629)
T PRK11634 166 ----FIEDVETIMAQIPEGHQTALFSATM 190 (629)
T ss_pred ----cHHHHHHHHHhCCCCCeEEEEEccC
Confidence 22334444555543 4468899996
No 56
>PRK02362 ski2-like helicase; Provisional
Probab=96.92 E-value=0.0029 Score=59.14 Aligned_cols=86 Identities=17% Similarity=0.140 Sum_probs=51.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHH----HhhccCccEEEEcccccccCcccccccc
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK----YFNRIKWQYLILDEAQAIVDINVYSYLN 82 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~----~l~~~~w~~vIvDEaH~lkn~~~~~~~~ 82 (190)
+++|.++.|...... ...+..||+|+|++.+..... .+. ..++||+||+|.+.+..
T Consensus 94 g~~v~~~tGd~~~~~------------~~l~~~~IiV~Tpek~~~llr~~~~~l~--~v~lvViDE~H~l~d~~------ 153 (737)
T PRK02362 94 GVRVGISTGDYDSRD------------EWLGDNDIIVATSEKVDSLLRNGAPWLD--DITCVVVDEVHLIDSAN------ 153 (737)
T ss_pred CCEEEEEeCCcCccc------------cccCCCCEEEECHHHHHHHHhcChhhhh--hcCEEEEECccccCCCc------
Confidence 577888888643221 122567999999987744222 111 45899999999997521
Q ss_pred hhhhhhhHHHH----HHhcC-CcCcEEEEecCCCCCCHHHHH
Q psy13032 83 DIEREQSMRWK----LLLGF-SCRNRLLLSGTPIQNSMAELW 119 (190)
Q Consensus 83 ~~~~~~s~~~~----~~~~l-~~~~r~lLTgTP~~n~~~el~ 119 (190)
...... .+..+ ...+.++||+|.- +..++.
T Consensus 154 -----rg~~le~il~rl~~~~~~~qii~lSATl~--n~~~la 188 (737)
T PRK02362 154 -----RGPTLEVTLAKLRRLNPDLQVVALSATIG--NADELA 188 (737)
T ss_pred -----chHHHHHHHHHHHhcCCCCcEEEEcccCC--CHHHHH
Confidence 111111 12222 3346799999973 455554
No 57
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=96.87 E-value=0.0033 Score=56.46 Aligned_cols=65 Identities=14% Similarity=0.175 Sum_probs=43.0
Q ss_pred CCccEEEecHHHHHhcHHH--hhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCC
Q psy13032 37 ASFHVVITSYQLVVSDFKY--FNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPI 111 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~~~--l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~ 111 (190)
..++|+|+|.+.+...... +.--...++|+||||++-... -.....+.+..+.....+++|+|.-
T Consensus 245 ~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~g----------f~~~i~~i~~~l~~~q~l~~SATl~ 311 (518)
T PLN00206 245 QGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERG----------FRDQVMQIFQALSQPQVLLFSATVS 311 (518)
T ss_pred CCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcc----------hHHHHHHHHHhCCCCcEEEEEeeCC
Confidence 3579999999887543221 111245789999999986521 2233444555666678899999974
No 58
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=96.81 E-value=0.0035 Score=54.64 Aligned_cols=86 Identities=21% Similarity=0.181 Sum_probs=49.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHH--HhhccCccEEEEcccccccCcccccccchh
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK--YFNRIKWQYLILDEAQAIVDINVYSYLNDI 84 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~--~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~ 84 (190)
++++..+.|.......... ....+||+|+|.+.+..... .+.--...++|+||||++-+..
T Consensus 111 ~~~v~~~~gg~~~~~~~~~---------l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~-------- 173 (423)
T PRK04837 111 GLKLGLAYGGDGYDKQLKV---------LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLG-------- 173 (423)
T ss_pred CceEEEEECCCCHHHHHHH---------hcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcc--------
Confidence 5777777775433222211 11357999999998865432 1222357899999999986521
Q ss_pred hhhhhHHHHHHhcCC---cCcEEEEecCCC
Q psy13032 85 EREQSMRWKLLLGFS---CRNRLLLSGTPI 111 (190)
Q Consensus 85 ~~~~s~~~~~~~~l~---~~~r~lLTgTP~ 111 (190)
-.......+..+. ....+++|+|.-
T Consensus 174 --f~~~i~~i~~~~~~~~~~~~~l~SAT~~ 201 (423)
T PRK04837 174 --FIKDIRWLFRRMPPANQRLNMLFSATLS 201 (423)
T ss_pred --cHHHHHHHHHhCCCccceeEEEEeccCC
Confidence 1122222333343 334588999974
No 59
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=96.81 E-value=0.0043 Score=54.97 Aligned_cols=87 Identities=17% Similarity=0.199 Sum_probs=49.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHH--hhccCccEEEEcccccccCcccccccchh
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY--FNRIKWQYLILDEAQAIVDINVYSYLNDI 84 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~--l~~~~w~~vIvDEaH~lkn~~~~~~~~~~ 84 (190)
++++..+.|.........+. ....++|+|+|.+.+...... ..--..++||+||||++.+..
T Consensus 190 ~~~v~~~~gg~~~~~~~~~~--------~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~-------- 253 (475)
T PRK01297 190 GLNVMTFVGGMDFDKQLKQL--------EARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMG-------- 253 (475)
T ss_pred CCEEEEEEccCChHHHHHHH--------hCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhcc--------
Confidence 56777777764322222211 124579999999998643221 111245789999999997521
Q ss_pred hhhhhHHHHHHhcCC---cCcEEEEecCCC
Q psy13032 85 EREQSMRWKLLLGFS---CRNRLLLSGTPI 111 (190)
Q Consensus 85 ~~~~s~~~~~~~~l~---~~~r~lLTgTP~ 111 (190)
-.......+..+. ....+++|+|..
T Consensus 254 --~~~~l~~i~~~~~~~~~~q~i~~SAT~~ 281 (475)
T PRK01297 254 --FIPQVRQIIRQTPRKEERQTLLFSATFT 281 (475)
T ss_pred --cHHHHHHHHHhCCCCCCceEEEEEeecC
Confidence 1122233333332 345789999964
No 60
>PTZ00424 helicase 45; Provisional
Probab=96.80 E-value=0.0045 Score=53.28 Aligned_cols=64 Identities=17% Similarity=0.162 Sum_probs=41.7
Q ss_pred CccEEEecHHHHHhcHH--HhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCc-CcEEEEecCCC
Q psy13032 38 SFHVVITSYQLVVSDFK--YFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSC-RNRLLLSGTPI 111 (190)
Q Consensus 38 ~~dvvitsy~~~~~~~~--~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~-~~r~lLTgTP~ 111 (190)
..+|+|+|.+.+..... .+.--..++||+||||++.... ........+..+.. ...+++|+|+-
T Consensus 146 ~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~----------~~~~~~~i~~~~~~~~~~i~~SAT~~ 212 (401)
T PTZ00424 146 GVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRG----------FKGQIYDVFKKLPPDVQVALFSATMP 212 (401)
T ss_pred CCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcc----------hHHHHHHHHhhCCCCcEEEEEEecCC
Confidence 46899999988754322 1122357899999999986421 33344555555543 45789999974
No 61
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=96.80 E-value=0.0055 Score=55.74 Aligned_cols=65 Identities=23% Similarity=0.213 Sum_probs=40.1
Q ss_pred CCccEEEecHHHHHhcHHH---hhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCC---cCcEEEEecCC
Q psy13032 37 ASFHVVITSYQLVVSDFKY---FNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFS---CRNRLLLSGTP 110 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~~~---l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~---~~~r~lLTgTP 110 (190)
..+||+|+|.+.+...... +.-...+++|+||||++-... -.......+..+. ....+++|+|.
T Consensus 133 ~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~g----------f~~~i~~il~~lp~~~~~q~ll~SATl 202 (572)
T PRK04537 133 QGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLG----------FIKDIRFLLRRMPERGTRQTLLFSATL 202 (572)
T ss_pred CCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcc----------hHHHHHHHHHhcccccCceEEEEeCCc
Confidence 3579999999988654321 112245789999999885421 1222223333343 34578999996
Q ss_pred C
Q psy13032 111 I 111 (190)
Q Consensus 111 ~ 111 (190)
-
T Consensus 203 ~ 203 (572)
T PRK04537 203 S 203 (572)
T ss_pred c
Confidence 4
No 62
>PTZ00110 helicase; Provisional
Probab=96.74 E-value=0.0044 Score=56.03 Aligned_cols=63 Identities=22% Similarity=0.279 Sum_probs=40.4
Q ss_pred CccEEEecHHHHHhcHHH--hhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCc-CcEEEEecCC
Q psy13032 38 SFHVVITSYQLVVSDFKY--FNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSC-RNRLLLSGTP 110 (190)
Q Consensus 38 ~~dvvitsy~~~~~~~~~--l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~-~~r~lLTgTP 110 (190)
.++|+|+|.+.+...... ..--..++||+||||++-... -.....+.+..+.. ...+++|+|.
T Consensus 253 ~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~g----------f~~~i~~il~~~~~~~q~l~~SAT~ 318 (545)
T PTZ00110 253 GVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMG----------FEPQIRKIVSQIRPDRQTLMWSATW 318 (545)
T ss_pred CCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcc----------hHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 479999999887643221 111246899999999987621 22233444555543 4568899996
No 63
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=96.55 E-value=0.0091 Score=55.96 Aligned_cols=91 Identities=13% Similarity=0.209 Sum_probs=52.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcH--------HHhhccCccEEEEcccccccCccc
Q psy13032 6 PDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDF--------KYFNRIKWQYLILDEAQAIVDINV 77 (190)
Q Consensus 6 p~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~--------~~l~~~~w~~vIvDEaH~lkn~~~ 77 (190)
.++++.+|.|+........- ...++|+|||.+++.... ..+. ..++||+||||.+.+.-
T Consensus 107 ~~i~v~~~~Gdt~~~~r~~i----------~~~~~IivtTPd~L~~~~L~~~~~~~~~l~--~l~~vViDEah~~~g~f- 173 (742)
T TIGR03817 107 RGVRPATYDGDTPTEERRWA----------REHARYVLTNPDMLHRGILPSHARWARFLR--RLRYVVIDECHSYRGVF- 173 (742)
T ss_pred CCeEEEEEeCCCCHHHHHHH----------hcCCCEEEEChHHHHHhhccchhHHHHHHh--cCCEEEEeChhhccCcc-
Confidence 36788899997543221110 134799999999886321 1222 45899999999986510
Q ss_pred ccccchhhhhhhHHHHHHhcC-----CcCcEEEEecCCCCCCHHHH
Q psy13032 78 YSYLNDIEREQSMRWKLLLGF-----SCRNRLLLSGTPIQNSMAEL 118 (190)
Q Consensus 78 ~~~~~~~~~~~s~~~~~~~~l-----~~~~r~lLTgTP~~n~~~el 118 (190)
+..-....+.+..+ .....+++|+|. +++.++
T Consensus 174 -------g~~~~~il~rL~ri~~~~g~~~q~i~~SATi--~n~~~~ 210 (742)
T TIGR03817 174 -------GSHVALVLRRLRRLCARYGASPVFVLASATT--ADPAAA 210 (742)
T ss_pred -------HHHHHHHHHHHHHHHHhcCCCCEEEEEecCC--CCHHHH
Confidence 00112222222222 224578999996 344554
No 64
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=96.54 E-value=0.0034 Score=58.91 Aligned_cols=96 Identities=18% Similarity=0.165 Sum_probs=61.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhc------HHHhhccCccEEEEcccccccCcccccc
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSD------FKYFNRIKWQYLILDEAQAIVDINVYSY 80 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~------~~~l~~~~w~~vIvDEaH~lkn~~~~~~ 80 (190)
++.|-+-||+.......++ ....+||+|||-|++.-. .+.|. .-..|||||.|.+.+..
T Consensus 101 G~~v~vRhGDT~~~er~r~---------~~~PPdILiTTPEsL~lll~~~~~r~~l~--~vr~VIVDEiHel~~sK---- 165 (814)
T COG1201 101 GIEVAVRHGDTPQSEKQKM---------LKNPPHILITTPESLAILLNSPKFRELLR--DVRYVIVDEIHALAESK---- 165 (814)
T ss_pred CCccceecCCCChHHhhhc---------cCCCCcEEEeChhHHHHHhcCHHHHHHhc--CCcEEEeehhhhhhccc----
Confidence 5667778886543332221 235689999999999752 23344 34679999999998744
Q ss_pred cchhhhhhhHHHHHHhcC---C-cCcEEEEecCCCCCCHHHHHHHHHhhCCC
Q psy13032 81 LNDIEREQSMRWKLLLGF---S-CRNRLLLSGTPIQNSMAELWALLHFIMPS 128 (190)
Q Consensus 81 ~~~~~~~~s~~~~~~~~l---~-~~~r~lLTgTP~~n~~~el~~ll~fl~p~ 128 (190)
-.++.+-.+.++ . ...|++||+|=- .+++. -+||.++
T Consensus 166 ------RG~~Lsl~LeRL~~l~~~~qRIGLSATV~--~~~~v---arfL~g~ 206 (814)
T COG1201 166 ------RGVQLALSLERLRELAGDFQRIGLSATVG--PPEEV---AKFLVGF 206 (814)
T ss_pred ------cchhhhhhHHHHHhhCcccEEEeehhccC--CHHHH---HHHhcCC
Confidence 334444444443 3 357999999964 55554 5677665
No 65
>PRK01172 ski2-like helicase; Provisional
Probab=96.39 E-value=0.011 Score=54.67 Aligned_cols=71 Identities=21% Similarity=0.085 Sum_probs=40.5
Q ss_pred CCccEEEecHHHHHhcH----HHhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCC-cCcEEEEecCCC
Q psy13032 37 ASFHVVITSYQLVVSDF----KYFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFS-CRNRLLLSGTPI 111 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~----~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~-~~~r~lLTgTP~ 111 (190)
..+|++|+|++.+.... ..+. ..++||+||+|.+.+..... .-......+..+. ..+.++||+|+-
T Consensus 110 ~~~dIiv~Tpek~~~l~~~~~~~l~--~v~lvViDEaH~l~d~~rg~-------~le~ll~~~~~~~~~~riI~lSATl~ 180 (674)
T PRK01172 110 KRYDVVILTSEKADSLIHHDPYIIN--DVGLIVADEIHIIGDEDRGP-------TLETVLSSARYVNPDARILALSATVS 180 (674)
T ss_pred ccCCEEEECHHHHHHHHhCChhHHh--hcCEEEEecchhccCCCccH-------HHHHHHHHHHhcCcCCcEEEEeCccC
Confidence 45799999998764322 2222 46899999999996521100 0011111222232 345789999973
Q ss_pred CCCHHHH
Q psy13032 112 QNSMAEL 118 (190)
Q Consensus 112 ~n~~~el 118 (190)
+..++
T Consensus 181 --n~~~l 185 (674)
T PRK01172 181 --NANEL 185 (674)
T ss_pred --CHHHH
Confidence 34554
No 66
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=96.36 E-value=0.0092 Score=57.49 Aligned_cols=76 Identities=26% Similarity=0.348 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHH
Q psy13032 16 SPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLL 95 (190)
Q Consensus 16 ~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~ 95 (190)
+.++.+.+.+. -+.|+.||||=|+-.+.+++.+- .-.++|+||=||+.- ..- ..+
T Consensus 682 s~kE~~~il~~-------la~G~vDIvIGTHrLL~kdv~Fk---dLGLlIIDEEqRFGV------------k~K---EkL 736 (1139)
T COG1197 682 SAKEQKEILKG-------LAEGKVDIVIGTHRLLSKDVKFK---DLGLLIIDEEQRFGV------------KHK---EKL 736 (1139)
T ss_pred CHHHHHHHHHH-------HhcCCccEEEechHhhCCCcEEe---cCCeEEEechhhcCc------------cHH---HHH
Confidence 44455555542 24588999999999998775532 457999999999975 221 345
Q ss_pred hcCCc-CcEEEEecCCCCCCHH
Q psy13032 96 LGFSC-RNRLLLSGTPIQNSMA 116 (190)
Q Consensus 96 ~~l~~-~~r~lLTgTP~~n~~~ 116 (190)
+++++ ...+-||+||++..+.
T Consensus 737 K~Lr~~VDvLTLSATPIPRTL~ 758 (1139)
T COG1197 737 KELRANVDVLTLSATPIPRTLN 758 (1139)
T ss_pred HHHhccCcEEEeeCCCCcchHH
Confidence 56654 4789999999998765
No 67
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.23 E-value=0.025 Score=50.76 Aligned_cols=89 Identities=15% Similarity=-0.044 Sum_probs=48.2
Q ss_pred CeEEEEeCCH--HHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEcccccccCcccccccchhh
Q psy13032 8 FKVVPYWGSP--QERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYSYLNDIE 85 (190)
Q Consensus 8 l~v~~~~G~~--~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~ 85 (190)
.++.++||.. .+|...... ...++.+|||+|...+.. .--..++|||||.|...-.... ...
T Consensus 51 ~~v~vlhs~~~~~er~~~~~~-------~~~g~~~IVVGTrsalf~-----p~~~l~lIIVDEeh~~sykq~~----~p~ 114 (505)
T TIGR00595 51 SQVAVLHSGLSDSEKLQAWRK-------VKNGEILVVIGTRSALFL-----PFKNLGLIIVDEEHDSSYKQEE----GPR 114 (505)
T ss_pred CcEEEEECCCCHHHHHHHHHH-------HHcCCCCEEECChHHHcC-----cccCCCEEEEECCCcccccccc----CCC
Confidence 4677888753 333332221 124578999999876532 2235699999999976421100 000
Q ss_pred hhhhHHHHHHhcCCcCcEEEEecCCCC
Q psy13032 86 REQSMRWKLLLGFSCRNRLLLSGTPIQ 112 (190)
Q Consensus 86 ~~~s~~~~~~~~l~~~~r~lLTgTP~~ 112 (190)
.+................+++|+||..
T Consensus 115 y~ar~~a~~ra~~~~~~vil~SATPsl 141 (505)
T TIGR00595 115 YHARDVAVYRAKKFNCPVVLGSATPSL 141 (505)
T ss_pred CcHHHHHHHHHHhcCCCEEEEeCCCCH
Confidence 000111112222344568899999974
No 68
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=96.13 E-value=0.014 Score=56.62 Aligned_cols=83 Identities=13% Similarity=0.154 Sum_probs=52.4
Q ss_pred CCCccEEEecHHHHHhcH---HHhh----ccCccEEEEcccccccCcccccccchhhhhhhHHHH----HHhcCCcCcEE
Q psy13032 36 DASFHVVITSYQLVVSDF---KYFN----RIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWK----LLLGFSCRNRL 104 (190)
Q Consensus 36 ~~~~dvvitsy~~~~~~~---~~l~----~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~----~~~~l~~~~r~ 104 (190)
.+.++++++|.|.+.... ..+. .....+|||||||.+-.+.. .-..-++ ....+.....+
T Consensus 550 ~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGh---------DFRpdYr~L~~Lr~~fp~vPil 620 (1195)
T PLN03137 550 YSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGH---------DFRPDYQGLGILKQKFPNIPVL 620 (1195)
T ss_pred CCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhccc---------chHHHHHHHHHHHHhCCCCCeE
Confidence 367899999999876421 1222 12368899999999865321 1111122 22234455678
Q ss_pred EEecCCCCCCHHHHHHHHHhhCC
Q psy13032 105 LLSGTPIQNSMAELWALLHFIMP 127 (190)
Q Consensus 105 lLTgTP~~n~~~el~~ll~fl~p 127 (190)
+||+|.......|+...+.+..+
T Consensus 621 ALTATAT~~V~eDI~~~L~l~~~ 643 (1195)
T PLN03137 621 ALTATATASVKEDVVQALGLVNC 643 (1195)
T ss_pred EEEecCCHHHHHHHHHHcCCCCc
Confidence 99999988888887776654433
No 69
>PRK09401 reverse gyrase; Reviewed
Probab=96.10 E-value=0.022 Score=55.97 Aligned_cols=38 Identities=18% Similarity=0.583 Sum_probs=32.5
Q ss_pred CCccEEEecHHHHHhcHHHhhccCccEEEEcccccccC
Q psy13032 37 ASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVD 74 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn 74 (190)
+.+||+|+|.+.+....+.+....++++|+||||++-.
T Consensus 178 ~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L~ 215 (1176)
T PRK09401 178 GDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVDAVLK 215 (1176)
T ss_pred CCCCEEEECHHHHHHHHHhccccccCEEEEEChHHhhh
Confidence 56899999999999877766666799999999998864
No 70
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=96.09 E-value=0.0046 Score=47.35 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=26.9
Q ss_pred CCCCccEEEecHHHHHhcHH--Hhh--ccCccEEEEcccccccC
Q psy13032 35 KDASFHVVITSYQLVVSDFK--YFN--RIKWQYLILDEAQAIVD 74 (190)
Q Consensus 35 ~~~~~dvvitsy~~~~~~~~--~l~--~~~w~~vIvDEaH~lkn 74 (190)
....+||||++|..+-...- .+. ...-.+||+||||+|-+
T Consensus 116 ~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 116 LAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp CGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred hcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 34668999999999876421 221 22345889999999965
No 71
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=96.05 E-value=0.006 Score=58.67 Aligned_cols=66 Identities=23% Similarity=0.157 Sum_probs=44.7
Q ss_pred CccEEEecHHHHHhcHHH----hhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhc-CCcCcEEEEecCCCC
Q psy13032 38 SFHVVITSYQLVVSDFKY----FNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLG-FSCRNRLLLSGTPIQ 112 (190)
Q Consensus 38 ~~dvvitsy~~~~~~~~~----l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~-l~~~~r~lLTgTP~~ 112 (190)
.-.|+|||...+...... ......-+||+|||||--. ....+.+.. ++.-..++.||||+.
T Consensus 350 ~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~--------------G~~~~~~~~~~~~a~~~gFTGTPi~ 415 (962)
T COG0610 350 KGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQY--------------GELAKLLKKALKKAIFIGFTGTPIF 415 (962)
T ss_pred CCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccc--------------cHHHHHHHHHhccceEEEeeCCccc
Confidence 446999999988775432 2344567899999998743 333333333 344667899999998
Q ss_pred CCHHH
Q psy13032 113 NSMAE 117 (190)
Q Consensus 113 n~~~e 117 (190)
..-..
T Consensus 416 ~~d~~ 420 (962)
T COG0610 416 KEDKD 420 (962)
T ss_pred ccccc
Confidence 76554
No 72
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=96.04 E-value=0.0066 Score=50.54 Aligned_cols=39 Identities=23% Similarity=0.280 Sum_probs=28.3
Q ss_pred CCCccEEEecHHHHHhcH--HHh-hccCccEEEEcccccccC
Q psy13032 36 DASFHVVITSYQLVVSDF--KYF-NRIKWQYLILDEAQAIVD 74 (190)
Q Consensus 36 ~~~~dvvitsy~~~~~~~--~~l-~~~~w~~vIvDEaH~lkn 74 (190)
...+||||++|..+..+. ..+ ....-.+||+||||++-.
T Consensus 209 ~~~Adivi~ny~yll~~~~r~~~~~~l~~~~lIiDEAHnL~d 250 (289)
T smart00489 209 IEFANVVVLPYQYLLDPKIRQALSIELKDSIVIFDEAHNLDN 250 (289)
T ss_pred hhcCCEEEECHHHHhcHHHHHHhcccccccEEEEeCccChHH
Confidence 467899999999997543 111 123457999999999954
No 73
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=96.04 E-value=0.0066 Score=50.54 Aligned_cols=39 Identities=23% Similarity=0.280 Sum_probs=28.3
Q ss_pred CCCccEEEecHHHHHhcH--HHh-hccCccEEEEcccccccC
Q psy13032 36 DASFHVVITSYQLVVSDF--KYF-NRIKWQYLILDEAQAIVD 74 (190)
Q Consensus 36 ~~~~dvvitsy~~~~~~~--~~l-~~~~w~~vIvDEaH~lkn 74 (190)
...+||||++|..+..+. ..+ ....-.+||+||||++-.
T Consensus 209 ~~~Adivi~ny~yll~~~~r~~~~~~l~~~~lIiDEAHnL~d 250 (289)
T smart00488 209 IEFANVVVLPYQYLLDPKIRQALSIELKDSIVIFDEAHNLDN 250 (289)
T ss_pred hhcCCEEEECHHHHhcHHHHHHhcccccccEEEEeCccChHH
Confidence 467899999999997543 111 123457999999999954
No 74
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=95.99 E-value=0.018 Score=49.32 Aligned_cols=71 Identities=20% Similarity=0.170 Sum_probs=40.0
Q ss_pred CCccEEEecHHHHHhcHHHh----------hccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCC-cCcEEE
Q psy13032 37 ASFHVVITSYQLVVSDFKYF----------NRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFS-CRNRLL 105 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~~~l----------~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~-~~~r~l 105 (190)
...++++|+++++....... .....++||+||+|.+......... ..-.....+.... ..+.++
T Consensus 112 ~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~~~~~~~~-----~~l~~~~~~~~~~~~~~~i~ 186 (357)
T TIGR03158 112 STPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDAKQLVGML-----FLLAYMQLIRFFECRRKFVF 186 (357)
T ss_pred CCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCcccchhhh-----hhhHHHHHHHhhhcCCcEEE
Confidence 46789999999886422110 0136789999999998752100000 0001122222111 357899
Q ss_pred EecCCCC
Q psy13032 106 LSGTPIQ 112 (190)
Q Consensus 106 LTgTP~~ 112 (190)
|||||-.
T Consensus 187 lSAT~~~ 193 (357)
T TIGR03158 187 LSATPDP 193 (357)
T ss_pred EecCCCH
Confidence 9999854
No 75
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=95.93 E-value=0.015 Score=49.25 Aligned_cols=64 Identities=17% Similarity=0.080 Sum_probs=39.2
Q ss_pred CCccEEEecHHHHHhcHHH--------hhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCC--cCcEEEE
Q psy13032 37 ASFHVVITSYQLVVSDFKY--------FNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFS--CRNRLLL 106 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~~~--------l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~--~~~r~lL 106 (190)
...+++++|.+.+...... +..+.-.+||+||+|.+... ........+..+. ....+++
T Consensus 93 ~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~-----------~~~~l~~~l~~l~~~~~~~i~~ 161 (358)
T TIGR01587 93 FLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEY-----------TLALILAVLEVLKDNDVPILLM 161 (358)
T ss_pred hhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHH-----------HHHHHHHHHHHHHHcCCCEEEE
Confidence 3467999999987653222 12233478999999998651 1112333333232 3457999
Q ss_pred ecCCC
Q psy13032 107 SGTPI 111 (190)
Q Consensus 107 TgTP~ 111 (190)
|||+-
T Consensus 162 SATlp 166 (358)
T TIGR01587 162 SATLP 166 (358)
T ss_pred ecCch
Confidence 99974
No 76
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=95.75 E-value=0.008 Score=55.95 Aligned_cols=39 Identities=23% Similarity=0.332 Sum_probs=30.0
Q ss_pred CCCccEEEecHHHHHhcHHH-----hhccCccEEEEcccccccC
Q psy13032 36 DASFHVVITSYQLVVSDFKY-----FNRIKWQYLILDEAQAIVD 74 (190)
Q Consensus 36 ~~~~dvvitsy~~~~~~~~~-----l~~~~w~~vIvDEaH~lkn 74 (190)
...+||||||++.+..+... +.....+.+|+||||++-.
T Consensus 217 a~~AdivVtNH~LLladl~~~~~~iLp~~~~~~lViDEAH~L~d 260 (697)
T PRK11747 217 IDEADVVVANHDLVLADLELGGGVVLPDPENLLYVLDEGHHLPD 260 (697)
T ss_pred HhhCCEEEECcHHHHhhhhccCCcccCCCCCCEEEEECccchHH
Confidence 35789999999999887642 2223468899999999974
No 77
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=95.53 E-value=0.011 Score=54.42 Aligned_cols=39 Identities=15% Similarity=0.136 Sum_probs=29.3
Q ss_pred CCCccEEEecHHHHHhcHHHhhc--cCccEEEEcccccccC
Q psy13032 36 DASFHVVITSYQLVVSDFKYFNR--IKWQYLILDEAQAIVD 74 (190)
Q Consensus 36 ~~~~dvvitsy~~~~~~~~~l~~--~~w~~vIvDEaH~lkn 74 (190)
...+||||||+..+..+...-.. -..+.+|+||||++-.
T Consensus 180 a~~AdivItNHalL~~~~~~~~~iLP~~~~lIiDEAH~L~d 220 (636)
T TIGR03117 180 ARRCRILFCTHAMLGLAFRDKWGLLPQPDILIVDEAHLFEQ 220 (636)
T ss_pred cccCCEEEECHHHHHHHhhhhcCCCCCCCEEEEeCCcchHH
Confidence 47789999999999875422111 2368999999999975
No 78
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=95.31 E-value=0.013 Score=55.82 Aligned_cols=39 Identities=21% Similarity=0.310 Sum_probs=29.0
Q ss_pred CCCccEEEecHHHHHhcHHHhhc--cCccEEEEcccccccC
Q psy13032 36 DASFHVVITSYQLVVSDFKYFNR--IKWQYLILDEAQAIVD 74 (190)
Q Consensus 36 ~~~~dvvitsy~~~~~~~~~l~~--~~w~~vIvDEaH~lkn 74 (190)
...+|||||+|..+..+...-.. -..+.+|+||||++-.
T Consensus 414 a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d 454 (850)
T TIGR01407 414 AEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPD 454 (850)
T ss_pred HhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHH
Confidence 46789999999999876532111 2347999999999964
No 79
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=95.00 E-value=0.042 Score=53.99 Aligned_cols=37 Identities=16% Similarity=0.561 Sum_probs=31.4
Q ss_pred CCccEEEecHHHHHhcHHHhhccCccEEEEcccccccC
Q psy13032 37 ASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVD 74 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn 74 (190)
+.+||+|+|.+.+......+.. .++++|+||||++-.
T Consensus 177 ~~~dIlV~Tp~rL~~~~~~l~~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 177 GDFDILITTTMFLSKNYDELGP-KFDFIFVDDVDALLK 213 (1171)
T ss_pred CCCCEEEECHHHHHHHHHHhcC-CCCEEEEeChHhhhh
Confidence 5689999999999877666554 799999999999865
No 80
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=94.89 E-value=0.022 Score=54.66 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=29.9
Q ss_pred CCCccEEEecHHHHHhcHHHhhc--cCccEEEEcccccccC
Q psy13032 36 DASFHVVITSYQLVVSDFKYFNR--IKWQYLILDEAQAIVD 74 (190)
Q Consensus 36 ~~~~dvvitsy~~~~~~~~~l~~--~~w~~vIvDEaH~lkn 74 (190)
...+||||||+..+..+...-.. -..+.+|+||||++-.
T Consensus 429 a~~AdivItNHalLl~dl~~~~~ilp~~~~lViDEAH~l~d 469 (928)
T PRK08074 429 AKFADLVITNHALLLTDLTSEEPLLPSYEHIIIDEAHHFEE 469 (928)
T ss_pred HhcCCEEEECHHHHHHHHhhhcccCCCCCeEEEECCchHHH
Confidence 46789999999999887532111 2478999999999974
No 81
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=94.87 E-value=0.049 Score=49.57 Aligned_cols=90 Identities=16% Similarity=0.194 Sum_probs=62.8
Q ss_pred CCCccEEEecHHHHHhc--HHHhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCC
Q psy13032 36 DASFHVVITSYQLVVSD--FKYFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQN 113 (190)
Q Consensus 36 ~~~~dvvitsy~~~~~~--~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n 113 (190)
.+..+++..|-|.+... .+.+.+....+++|||||.+..|...= .-.-.........+.-.-++.||+|--+.
T Consensus 105 ~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdF-----RP~Y~~lg~l~~~~~~~p~~AlTATA~~~ 179 (590)
T COG0514 105 SGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDF-----RPDYRRLGRLRAGLPNPPVLALTATATPR 179 (590)
T ss_pred cCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCcc-----CHhHHHHHHHHhhCCCCCEEEEeCCCChH
Confidence 46789999999999874 355678889999999999987643100 00223333333344444689999999888
Q ss_pred CHHHHHHHHHhhCCCCC
Q psy13032 114 SMAELWALLHFIMPSMF 130 (190)
Q Consensus 114 ~~~el~~ll~fl~p~~~ 130 (190)
-..|+-..|..-.+..|
T Consensus 180 v~~DI~~~L~l~~~~~~ 196 (590)
T COG0514 180 VRDDIREQLGLQDANIF 196 (590)
T ss_pred HHHHHHHHhcCCCcceE
Confidence 89999888886666443
No 82
>PRK05580 primosome assembly protein PriA; Validated
Probab=94.80 E-value=0.13 Score=47.85 Aligned_cols=55 Identities=18% Similarity=0.088 Sum_probs=34.1
Q ss_pred CCeEEEEeCCH--HHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEccccccc
Q psy13032 7 DFKVVPYWGSP--QERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIV 73 (190)
Q Consensus 7 ~l~v~~~~G~~--~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lk 73 (190)
+.++.+++|.. .++...... ...+..+|||.|.+.+. +.--..++||+||+|...
T Consensus 215 g~~v~~~~s~~s~~~r~~~~~~-------~~~g~~~IVVgTrsal~-----~p~~~l~liVvDEeh~~s 271 (679)
T PRK05580 215 GAPVAVLHSGLSDGERLDEWRK-------AKRGEAKVVIGARSALF-----LPFKNLGLIIVDEEHDSS 271 (679)
T ss_pred CCCEEEEECCCCHHHHHHHHHH-------HHcCCCCEEEeccHHhc-----ccccCCCEEEEECCCccc
Confidence 45788888754 333322211 12356899999976543 112356899999999754
No 83
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=94.65 E-value=0.1 Score=49.41 Aligned_cols=84 Identities=11% Similarity=0.056 Sum_probs=47.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHH--------h---h---ccCccEEEEcccccc
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY--------F---N---RIKWQYLILDEAQAI 72 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~--------l---~---~~~w~~vIvDEaH~l 72 (190)
.+++....|.......... ....++|||.|.+.+.+..-. . . --.-.++|+|||| +
T Consensus 113 ~l~v~~l~GG~~~~~q~~~---------l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD-L 182 (844)
T TIGR02621 113 PLAISTLRGQFADNDEWML---------DPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH-L 182 (844)
T ss_pred CeEEEEEECCCChHHHHHh---------cCCCCcEEEECHHHHcCCccccccccccccccchhhhhccceEEEEehhh-h
Confidence 4777877777544333332 124679999998888653210 0 0 0135689999999 4
Q ss_pred cCcccccccchhhhhhhHHHHHHhcC--Cc----CcEEEEecCCC
Q psy13032 73 VDINVYSYLNDIEREQSMRWKLLLGF--SC----RNRLLLSGTPI 111 (190)
Q Consensus 73 kn~~~~~~~~~~~~~~s~~~~~~~~l--~~----~~r~lLTgTP~ 111 (190)
... -.....+.+..+ .. ...+++|+|+-
T Consensus 183 d~g-----------F~~~l~~Il~~l~rp~~~rprQtLLFSAT~p 216 (844)
T TIGR02621 183 EPA-----------FQELLKQIMNEQQRPPDFLPLRVVELTATSR 216 (844)
T ss_pred ccc-----------cHHHHHHHHHhcccCcccccceEEEEecCCC
Confidence 331 122222222221 11 35799999984
No 84
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=94.61 E-value=0.031 Score=53.04 Aligned_cols=39 Identities=18% Similarity=0.231 Sum_probs=29.3
Q ss_pred CCCccEEEecHHHHHhcHHHhhc-cCccEEEEcccccccC
Q psy13032 36 DASFHVVITSYQLVVSDFKYFNR-IKWQYLILDEAQAIVD 74 (190)
Q Consensus 36 ~~~~dvvitsy~~~~~~~~~l~~-~~w~~vIvDEaH~lkn 74 (190)
...+||||||+..+..+...-.. -..+.+|+||||++-.
T Consensus 411 a~~AdivItNHall~~~~~~~~~~p~~~~lIiDEAH~l~~ 450 (820)
T PRK07246 411 AKTARLLITNHAYFLTRVQDDKDFARNKVLVFDEAQKLML 450 (820)
T ss_pred HHhCCEEEEchHHHHHHHhhccCCCCCCEEEEECcchhHH
Confidence 36789999999998875422111 2579999999999974
No 85
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.40 E-value=0.057 Score=42.14 Aligned_cols=60 Identities=25% Similarity=0.383 Sum_probs=34.2
Q ss_pred CCccEEEecHHHHHhcHHHhhcc--CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCC
Q psy13032 37 ASFHVVITSYQLVVSDFKYFNRI--KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNS 114 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~~~l~~~--~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~ 114 (190)
..++||++|-..+.. ..+... .+|+||||||-.+.- ......+ .....+++|-|=|.|-.
T Consensus 169 ~~~~vi~~T~~~~~~--~~~~~~~~~~d~vIvDEAsq~~e--------------~~~l~~l--~~~~~~~vlvGD~~QLp 230 (236)
T PF13086_consen 169 KEADVIFTTLSSAAS--PFLSNFKEKFDVVIVDEASQITE--------------PEALIPL--SRAPKRIVLVGDPKQLP 230 (236)
T ss_dssp HT-SEEEEETCGGG---CCGTT-----SEEEETTGGGS-H--------------HHHHHHH--TTTBSEEEEEE-TTS--
T ss_pred ccccccccccccchh--hHhhhhcccCCEEEEeCCCCcch--------------HHHHHHH--HHhCCEEEEECChhhcC
Confidence 467899998776632 334444 799999999987732 2222222 23338899999888744
No 86
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=94.18 E-value=0.083 Score=37.72 Aligned_cols=38 Identities=32% Similarity=0.454 Sum_probs=26.3
Q ss_pred CccEEEEcccccc-cCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCC
Q psy13032 60 KWQYLILDEAQAI-VDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTP 110 (190)
Q Consensus 60 ~w~~vIvDEaH~l-kn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP 110 (190)
.-.+||+||+|++ +. ..-...+.+.. ...-.+++.|||
T Consensus 87 ~~~~lviDe~~~l~~~------------~~l~~l~~l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 87 RVVLLVIDEADHLFSD------------EFLEFLRSLLN-ESNIKVVLVGTP 125 (131)
T ss_dssp TEEEEEEETTHHHHTH------------HHHHHHHHHTC-SCBEEEEEEESS
T ss_pred CCeEEEEeChHhcCCH------------HHHHHHHHHHh-CCCCeEEEEECh
Confidence 3368999999998 43 33333344434 666789999999
No 87
>COG4889 Predicted helicase [General function prediction only]
Probab=94.01 E-value=0.018 Score=54.46 Aligned_cols=70 Identities=21% Similarity=0.310 Sum_probs=43.3
Q ss_pred CCCCccEEEecHHHHHhcHHH--hhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHh---cCCcCcEEEEecC
Q psy13032 35 KDASFHVVITSYQLVVSDFKY--FNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLL---GFSCRNRLLLSGT 109 (190)
Q Consensus 35 ~~~~~dvvitsy~~~~~~~~~--l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~---~l~~~~r~lLTgT 109 (190)
+...--||.+||..+-.-.+. .---+||+||+|||||--...... + ..+. +..++ -+++..|+-||+|
T Consensus 277 k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliicDEAHRTtGa~~a~---d---d~sa-Ft~vHs~~niKa~kRlYmTAT 349 (1518)
T COG4889 277 KANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIICDEAHRTTGATLAG---D---DKSA-FTRVHSDQNIKAAKRLYMTAT 349 (1518)
T ss_pred ccCCcEEEEEcccchHHHHHHHHcCCCCccEEEecchhccccceecc---c---Cccc-ceeecCcchhHHHHhhhcccC
Confidence 445667999999988764333 223479999999999875422110 0 1111 11111 2356678999999
Q ss_pred CC
Q psy13032 110 PI 111 (190)
Q Consensus 110 P~ 111 (190)
|-
T Consensus 350 Pk 351 (1518)
T COG4889 350 PK 351 (1518)
T ss_pred ch
Confidence 94
No 88
>PRK10536 hypothetical protein; Provisional
Probab=93.88 E-value=0.12 Score=42.44 Aligned_cols=57 Identities=19% Similarity=0.258 Sum_probs=41.8
Q ss_pred cEEEecHHHHHhcHHHhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCCH
Q psy13032 40 HVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNSM 115 (190)
Q Consensus 40 dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~~ 115 (190)
.|.|.+...++.. .+.-++||+||||++ ........+.++....+++++|-|-|.++
T Consensus 161 ~Iei~~l~ymRGr-----tl~~~~vIvDEaqn~--------------~~~~~k~~ltR~g~~sk~v~~GD~~QiD~ 217 (262)
T PRK10536 161 KVEIAPFAYMRGR-----TFENAVVILDEAQNV--------------TAAQMKMFLTRLGENVTVIVNGDITQCDL 217 (262)
T ss_pred cEEEecHHHhcCC-----cccCCEEEEechhcC--------------CHHHHHHHHhhcCCCCEEEEeCChhhccC
Confidence 3566666555542 234479999999999 45666677788888999999999977553
No 89
>KOG0952|consensus
Probab=93.64 E-value=0.11 Score=49.95 Aligned_cols=114 Identities=18% Similarity=0.172 Sum_probs=65.1
Q ss_pred CccCC-CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHH---h----cHHHhhccCccEEEEccccccc
Q psy13032 2 ERFVP-DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVV---S----DFKYFNRIKWQYLILDEAQAIV 73 (190)
Q Consensus 2 ~k~~p-~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~---~----~~~~l~~~~w~~vIvDEaH~lk 73 (190)
+|+.| +++|.-+.|+..--+.- ..+++|+|||-|..- + +...+. ...+||+||.|.+.
T Consensus 186 kkl~~~gi~v~ELTGD~ql~~te------------i~~tqiiVTTPEKwDvvTRk~~~d~~l~~--~V~LviIDEVHlLh 251 (1230)
T KOG0952|consen 186 KKLAPLGISVRELTGDTQLTKTE------------IADTQIIVTTPEKWDVVTRKSVGDSALFS--LVRLVIIDEVHLLH 251 (1230)
T ss_pred hhcccccceEEEecCcchhhHHH------------HHhcCEEEecccceeeeeeeeccchhhhh--heeeEEeeeehhhc
Confidence 35666 78899999986543221 256899999987542 1 122222 35789999999998
Q ss_pred CcccccccchhhhhhhHHHHHHhcC----CcCcEEEEecCCCCCCHHHHHHHHHhhCCCCCCChHHHHHHHh
Q psy13032 74 DINVYSYLNDIEREQSMRWKLLLGF----SCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFS 141 (190)
Q Consensus 74 n~~~~~~~~~~~~~~s~~~~~~~~l----~~~~r~lLTgTP~~n~~~el~~ll~fl~p~~~~~~~~F~~~~~ 141 (190)
.... .- -.+-.++.+..+ ..-+.++||||- -+.+|+ -+||...+....-.|...|.
T Consensus 252 d~RG----pv---lEtiVaRtlr~vessqs~IRivgLSATl--PN~eDv---A~fL~vn~~~glfsFd~~yR 311 (1230)
T KOG0952|consen 252 DDRG----PV---LETIVARTLRLVESSQSMIRIVGLSATL--PNYEDV---ARFLRVNPYAGLFSFDQRYR 311 (1230)
T ss_pred Cccc----ch---HHHHHHHHHHHHHhhhhheEEEEeeccC--CCHHHH---HHHhcCCCccceeeeccccc
Confidence 7210 00 222233333222 223568999995 345554 56676654433344544443
No 90
>PRK14701 reverse gyrase; Provisional
Probab=93.60 E-value=0.13 Score=52.21 Aligned_cols=61 Identities=16% Similarity=0.489 Sum_probs=41.1
Q ss_pred CCeEEEEeCCHHHHH--HHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEcccccccC
Q psy13032 7 DFKVVPYWGSPQERK--ILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVD 74 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~--~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn 74 (190)
++++..++|+..... ...+. -..+++||+|+|-+.+......+....++++|+||||.+-.
T Consensus 152 ~v~v~~~~g~~s~~e~~~~~~~-------l~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml~ 214 (1638)
T PRK14701 152 DVRLVYYHSNLRKKEKEEFLER-------IENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVDAFLK 214 (1638)
T ss_pred ceeEEEEeCCCCHHHHHHHHHH-------HhcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECceeccc
Confidence 456777887643322 11111 12357899999999887765544446789999999999854
No 91
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=93.43 E-value=0.1 Score=41.32 Aligned_cols=43 Identities=21% Similarity=0.377 Sum_probs=24.5
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCCHH
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNSMA 116 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~~~ 116 (190)
...+||+||||++ .....-..+.++-...+++++|-|.|.+..
T Consensus 119 ~~~~iIvDEaQN~--------------t~~~~k~ilTR~g~~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 119 DNAFIIVDEAQNL--------------TPEELKMILTRIGEGSKIIITGDPSQIDLP 161 (205)
T ss_dssp -SEEEEE-SGGG----------------HHHHHHHHTTB-TT-EEEEEE--------
T ss_pred cceEEEEecccCC--------------CHHHHHHHHcccCCCcEEEEecCceeecCC
Confidence 4579999999998 556666678888888999999999886544
No 92
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=93.23 E-value=0.19 Score=48.35 Aligned_cols=57 Identities=23% Similarity=0.507 Sum_probs=45.0
Q ss_pred CeEEEEeCC--HHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEcccccc
Q psy13032 8 FKVVPYWGS--PQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAI 72 (190)
Q Consensus 8 l~v~~~~G~--~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~l 72 (190)
..++ |||. .++++...+.. ..++|||+|||-..+.++.+.+.+..||.|+||....+
T Consensus 157 ~~~~-yh~~l~~~ekee~le~i-------~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~ 215 (1187)
T COG1110 157 VLVV-YHSALPTKEKEEALERI-------ESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAI 215 (1187)
T ss_pred eeee-eccccchHHHHHHHHHH-------hcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHH
Confidence 3344 9996 45555555432 34789999999999999999999999999999998744
No 93
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.11 E-value=0.092 Score=49.00 Aligned_cols=39 Identities=21% Similarity=0.248 Sum_probs=27.2
Q ss_pred CCCccEEEecHHHHHhcH--HHh-hccCccEEEEcccccccC
Q psy13032 36 DASFHVVITSYQLVVSDF--KYF-NRIKWQYLILDEAQAIVD 74 (190)
Q Consensus 36 ~~~~dvvitsy~~~~~~~--~~l-~~~~w~~vIvDEaH~lkn 74 (190)
...+||||.+|..+-.-. ..+ ....-.+||+||||++-+
T Consensus 193 ~~~advIi~pYnyl~dp~~r~~~~~~l~~~ivI~DEAHNL~d 234 (705)
T TIGR00604 193 LPFANIVLLPYQYLLDPKIRSAVSIELKDSIVIFDEAHNLDN 234 (705)
T ss_pred hhcCCEEEechHHhcCHHHHHHhhcccccCEEEEECccchHH
Confidence 367899999999885311 111 233447899999999965
No 94
>KOG0330|consensus
Probab=92.58 E-value=0.27 Score=42.59 Aligned_cols=92 Identities=17% Similarity=0.237 Sum_probs=62.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHH---hhccCccEEEEcccccccCcccccccch
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY---FNRIKWQYLILDEAQAIVDINVYSYLND 83 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~---l~~~~w~~vIvDEaH~lkn~~~~~~~~~ 83 (190)
++++.+..|.........+. ..++||+|.|.+.+..+... +.--.-..+|+|||.++-|-+
T Consensus 157 glr~~~lvGG~~m~~q~~~L---------~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~d------- 220 (476)
T KOG0330|consen 157 GLRVAVLVGGMDMMLQANQL---------SKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMD------- 220 (476)
T ss_pred CeEEEEEecCchHHHHHHHh---------hcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhh-------
Confidence 67888888888777666553 36789999999988876542 111234679999999998843
Q ss_pred hhhhhhHHHHHHhcCCcCc-EEEEecCCCCCCHHHH
Q psy13032 84 IEREQSMRWKLLLGFSCRN-RLLLSGTPIQNSMAEL 118 (190)
Q Consensus 84 ~~~~~s~~~~~~~~l~~~~-r~lLTgTP~~n~~~el 118 (190)
=....-..+..++..+ -++.|+|.- .+...|
T Consensus 221 ---F~~~ld~ILk~ip~erqt~LfsATMt-~kv~kL 252 (476)
T KOG0330|consen 221 ---FEEELDYILKVIPRERQTFLFSATMT-KKVRKL 252 (476)
T ss_pred ---hHHHHHHHHHhcCccceEEEEEeecc-hhhHHH
Confidence 3445566677776555 467777753 344443
No 95
>KOG0343|consensus
Probab=92.16 E-value=0.56 Score=42.53 Aligned_cols=81 Identities=21% Similarity=0.331 Sum_probs=54.0
Q ss_pred CCccEEEecHHHHHhcHHH---hhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCC-cCcEEEEecCCCC
Q psy13032 37 ASFHVVITSYQLVVSDFKY---FNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFS-CRNRLLLSGTPIQ 112 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~~~---l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~-~~~r~lLTgTP~~ 112 (190)
...+|+|||.+.+..+.+. |..-.-.++|+|||.++-.-. =+...-..+..++ .+.-+|.|+|+.
T Consensus 189 ~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMG----------Fk~tL~~Ii~~lP~~RQTLLFSATqt- 257 (758)
T KOG0343|consen 189 SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMG----------FKKTLNAIIENLPKKRQTLLFSATQT- 257 (758)
T ss_pred hcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHh----------HHHHHHHHHHhCChhheeeeeecccc-
Confidence 5678999999999886654 344456899999999986511 2223333444554 455799999996
Q ss_pred CCHHHHHHHHHhhCCCC
Q psy13032 113 NSMAELWALLHFIMPSM 129 (190)
Q Consensus 113 n~~~el~~ll~fl~p~~ 129 (190)
++..||.- +.+-+|..
T Consensus 258 ~svkdLaR-LsL~dP~~ 273 (758)
T KOG0343|consen 258 KSVKDLAR-LSLKDPVY 273 (758)
T ss_pred hhHHHHHH-hhcCCCcE
Confidence 56777644 44456654
No 96
>PHA02653 RNA helicase NPH-II; Provisional
Probab=91.66 E-value=0.31 Score=45.33 Aligned_cols=63 Identities=13% Similarity=0.209 Sum_probs=35.8
Q ss_pred CccEEEecHHHHHhcHHHhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCC--cCcEEEEecCCCCCCH
Q psy13032 38 SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFS--CRNRLLLSGTPIQNSM 115 (190)
Q Consensus 38 ~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~--~~~r~lLTgTP~~n~~ 115 (190)
..+++|.|..... ..+ -..++||+||||.+-. ..-.....+..+. .+..+++|||.-. ..
T Consensus 274 ~~~Ilv~T~~L~l---~~L--~~v~~VVIDEaHEr~~------------~~DllL~llk~~~~~~rq~ILmSATl~~-dv 335 (675)
T PHA02653 274 PYGLVFSTHKLTL---NKL--FDYGTVIIDEVHEHDQ------------IGDIIIAVARKHIDKIRSLFLMTATLED-DR 335 (675)
T ss_pred CCCEEEEeCcccc---ccc--ccCCEEEccccccCcc------------chhHHHHHHHHhhhhcCEEEEEccCCcH-hH
Confidence 4578888743211 112 2578999999998754 2222333333332 2357999999843 34
Q ss_pred HHH
Q psy13032 116 AEL 118 (190)
Q Consensus 116 ~el 118 (190)
..+
T Consensus 336 ~~l 338 (675)
T PHA02653 336 DRI 338 (675)
T ss_pred HHH
Confidence 443
No 97
>KOG0352|consensus
Probab=91.33 E-value=0.42 Score=42.11 Aligned_cols=83 Identities=16% Similarity=0.187 Sum_probs=53.4
Q ss_pred CCccEEEecHHHHHhcH--HHhh----ccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCc----CcEEEE
Q psy13032 37 ASFHVVITSYQLVVSDF--KYFN----RIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSC----RNRLLL 106 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~--~~l~----~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~----~~r~lL 106 (190)
..-.++-+|.|....+. +.|+ .-.-.+++|||||.+.-|.. .-..-|-.+-.|++ .-.+.|
T Consensus 112 p~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGH---------DFRPDYL~LG~LRS~~~~vpwvAL 182 (641)
T KOG0352|consen 112 PTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGH---------DFRPDYLTLGSLRSVCPGVPWVAL 182 (641)
T ss_pred CceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhcc---------ccCcchhhhhhHHhhCCCCceEEe
Confidence 44556667777765532 1222 22467899999998865432 22222333444433 336889
Q ss_pred ecCCCCCCHHHHHHHHHhhCCC
Q psy13032 107 SGTPIQNSMAELWALLHFIMPS 128 (190)
Q Consensus 107 TgTP~~n~~~el~~ll~fl~p~ 128 (190)
|+|--..--+|++..|++-.|=
T Consensus 183 TATA~~~VqEDi~~qL~L~~PV 204 (641)
T KOG0352|consen 183 TATANAKVQEDIAFQLKLRNPV 204 (641)
T ss_pred ecccChhHHHHHHHHHhhcCcH
Confidence 9999999999999999987773
No 98
>KOG0350|consensus
Probab=91.30 E-value=0.19 Score=44.78 Aligned_cols=70 Identities=16% Similarity=0.313 Sum_probs=47.3
Q ss_pred CCccCC--CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhc---cCccEEEEcccccccC
Q psy13032 1 MERFVP--DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNR---IKWQYLILDEAQAIVD 74 (190)
Q Consensus 1 i~k~~p--~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~---~~w~~vIvDEaH~lkn 74 (190)
|++|++ ++.|....|-..-+....+.- + ....-..||+|+|-+.+..+...-.. -+-.++|+|||.||.+
T Consensus 235 f~~~~~~tgL~V~~~sgq~sl~~E~~qL~---~-~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~ 309 (620)
T KOG0350|consen 235 FKRLNSGTGLAVCSLSGQNSLEDEARQLA---S-DPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLD 309 (620)
T ss_pred HHHhccCCceEEEecccccchHHHHHHHh---c-CCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHH
Confidence 467887 577888888776666665531 1 12223679999999988765442221 1356899999999987
No 99
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=90.69 E-value=0.25 Score=45.59 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=28.9
Q ss_pred CCccEEEecHHHHHhcHHHhhcc----CccEEEEcccccccC
Q psy13032 37 ASFHVVITSYQLVVSDFKYFNRI----KWQYLILDEAQAIVD 74 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~~~l~~~----~w~~vIvDEaH~lkn 74 (190)
..+|++|++++.+..+...-... .-.++|+||||++-+
T Consensus 193 ~~ad~vv~nh~~~~~~~~~~~~~~~~p~~~v~v~DEAH~l~d 234 (654)
T COG1199 193 ENADLVVTNHALLLADVALEESRILLPENDVVVFDEAHNLPD 234 (654)
T ss_pred hhCCEEEEccHHHHhHHHhhhhhccCCcccEEEEeccccchH
Confidence 46899999999998754332222 357999999999976
No 100
>PRK09694 helicase Cas3; Provisional
Probab=90.33 E-value=0.67 Score=44.45 Aligned_cols=72 Identities=17% Similarity=0.110 Sum_probs=43.1
Q ss_pred CccEEEecHHHHHhcHH-----Hhh--ccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcC--CcCcEEEEec
Q psy13032 38 SFHVVITSYQLVVSDFK-----YFN--RIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGF--SCRNRLLLSG 108 (190)
Q Consensus 38 ~~dvvitsy~~~~~~~~-----~l~--~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l--~~~~r~lLTg 108 (190)
-.+++|+|.+.+....- .+. .+.=.+||+||.|-+-.. ..+.....+..+ .....++||+
T Consensus 410 lapi~V~TiDQlL~a~l~~kh~~lR~~~La~svvIiDEVHAyD~y-----------m~~lL~~~L~~l~~~g~~vIllSA 478 (878)
T PRK09694 410 LGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVLIVDEVHAYDAY-----------MYGLLEAVLKAQAQAGGSVILLSA 478 (878)
T ss_pred cCCEEEcCHHHHHHHHHccchHHHHHHhhccCeEEEechhhCCHH-----------HHHHHHHHHHHHHhcCCcEEEEeC
Confidence 36899999998874221 111 233458999999988431 223333344333 2345899999
Q ss_pred CCCCCCHHHHHH
Q psy13032 109 TPIQNSMAELWA 120 (190)
Q Consensus 109 TP~~n~~~el~~ 120 (190)
|+-..-..+|..
T Consensus 479 TLP~~~r~~L~~ 490 (878)
T PRK09694 479 TLPATLKQKLLD 490 (878)
T ss_pred CCCHHHHHHHHH
Confidence 996544444433
No 101
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=90.09 E-value=0.77 Score=41.36 Aligned_cols=93 Identities=24% Similarity=0.290 Sum_probs=59.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHH--HhhccCccEEEEcccccccCcccccccchh
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK--YFNRIKWQYLILDEAQAIVDINVYSYLNDI 84 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~--~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~ 84 (190)
.+++..+.|.........+. +.+ +||||.|-+.+..... .+.--...++|+|||-+|-+..
T Consensus 128 ~~~~~~i~GG~~~~~q~~~l--------~~~-~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~G-------- 190 (513)
T COG0513 128 GLRVAVVYGGVSIRKQIEAL--------KRG-VDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMG-------- 190 (513)
T ss_pred CccEEEEECCCCHHHHHHHH--------hcC-CCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCC--------
Confidence 57777766655444444331 113 8999999998874332 1222356799999999998732
Q ss_pred hhhhhHHHHHHhcCCc-CcEEEEecCCCCCCHHHHH
Q psy13032 85 EREQSMRWKLLLGFSC-RNRLLLSGTPIQNSMAELW 119 (190)
Q Consensus 85 ~~~~s~~~~~~~~l~~-~~r~lLTgTP~~n~~~el~ 119 (190)
-...+...+..++. ...++.|+|.-. .+.++-
T Consensus 191 --f~~~i~~I~~~~p~~~qtllfSAT~~~-~i~~l~ 223 (513)
T COG0513 191 --FIDDIEKILKALPPDRQTLLFSATMPD-DIRELA 223 (513)
T ss_pred --CHHHHHHHHHhCCcccEEEEEecCCCH-HHHHHH
Confidence 34445555555554 567889999876 555543
No 102
>KOG0331|consensus
Probab=89.85 E-value=0.73 Score=41.46 Aligned_cols=64 Identities=25% Similarity=0.313 Sum_probs=44.3
Q ss_pred CCccEEEecHHHHHhcHH--HhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcC-CcCc-EEEEecCC
Q psy13032 37 ASFHVVITSYQLVVSDFK--YFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGF-SCRN-RLLLSGTP 110 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~~--~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l-~~~~-r~lLTgTP 110 (190)
...||+|+|-+.+.-..+ .+.--...++|+|||-+|-.-. =..+.-+.+..+ ++.. -++-|+|=
T Consensus 214 ~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmG----------Fe~qI~~Il~~i~~~~rQtlm~saTw 281 (519)
T KOG0331|consen 214 RGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMG----------FEPQIRKILSQIPRPDRQTLMFSATW 281 (519)
T ss_pred cCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccc----------cHHHHHHHHHhcCCCcccEEEEeeec
Confidence 458999999998765433 1222357899999999997632 567777888888 4443 56666653
No 103
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=89.59 E-value=0.47 Score=40.42 Aligned_cols=16 Identities=38% Similarity=0.553 Sum_probs=14.3
Q ss_pred cCccEEEEcccccccC
Q psy13032 59 IKWQYLILDEAQAIVD 74 (190)
Q Consensus 59 ~~w~~vIvDEaH~lkn 74 (190)
-.+|+|||||||++..
T Consensus 82 ~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 82 NKYDVIIVDEAQRLRT 97 (352)
T ss_pred CcCCEEEEehhHhhhh
Confidence 4689999999999976
No 104
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=89.32 E-value=0.86 Score=45.34 Aligned_cols=62 Identities=13% Similarity=0.153 Sum_probs=38.6
Q ss_pred CCccEEEecHHHHHhcHHHhh-ccCccEEEEcccc-cccCcccccccchhhhhhhHHHHHHhcC----CcCcEEEEecCC
Q psy13032 37 ASFHVVITSYQLVVSDFKYFN-RIKWQYLILDEAQ-AIVDINVYSYLNDIEREQSMRWKLLLGF----SCRNRLLLSGTP 110 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~~~l~-~~~w~~vIvDEaH-~lkn~~~~~~~~~~~~~~s~~~~~~~~l----~~~~r~lLTgTP 110 (190)
...+|+++|-+.+......-. --.+++||+|||| +.-| ..-.. ..+..+ +....+++|+|.
T Consensus 162 ~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn------------~DfLL-g~Lk~lL~~rpdlKvILmSATi 228 (1294)
T PRK11131 162 DNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLN------------IDFIL-GYLKELLPRRPDLKVIITSATI 228 (1294)
T ss_pred CCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccc------------cchHH-HHHHHhhhcCCCceEEEeeCCC
Confidence 356899999999987543110 1357899999999 5655 22111 122222 234578999998
Q ss_pred C
Q psy13032 111 I 111 (190)
Q Consensus 111 ~ 111 (190)
-
T Consensus 229 d 229 (1294)
T PRK11131 229 D 229 (1294)
T ss_pred C
Confidence 4
No 105
>KOG0345|consensus
Probab=88.21 E-value=0.87 Score=40.45 Aligned_cols=62 Identities=15% Similarity=0.292 Sum_probs=42.8
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHh----cHHHhhccCccEEEEcccccccC
Q psy13032 5 VPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVS----DFKYFNRIKWQYLILDEAQAIVD 74 (190)
Q Consensus 5 ~p~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~----~~~~l~~~~w~~vIvDEaH~lkn 74 (190)
.|.+++..+.|+..-...+..+- ...++|+|.|.+.+.. ..+.+.-...+++|+|||.++-.
T Consensus 106 l~~l~~~l~vGG~~v~~Di~~fk--------ee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLld 171 (567)
T KOG0345|consen 106 LPNLNCELLVGGRSVEEDIKTFK--------EEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLD 171 (567)
T ss_pred hhccceEEEecCccHHHHHHHHH--------HhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhc
Confidence 57899999999866555544321 2346899999886653 22334434678999999999865
No 106
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=87.95 E-value=0.97 Score=43.07 Aligned_cols=70 Identities=11% Similarity=0.053 Sum_probs=39.3
Q ss_pred CccEEEecHHHHHhcHHHh-hccCccEEEEcccc-cccCcccccccchhhhhhhHHHHHHhcCCc-CcEEEEecCCCCCC
Q psy13032 38 SFHVVITSYQLVVSDFKYF-NRIKWQYLILDEAQ-AIVDINVYSYLNDIEREQSMRWKLLLGFSC-RNRLLLSGTPIQNS 114 (190)
Q Consensus 38 ~~dvvitsy~~~~~~~~~l-~~~~w~~vIvDEaH-~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~-~~r~lLTgTP~~n~ 114 (190)
..+|+++|.+.+.+....- .--..++||+||+| +.-+.+- .-.........++. ...+++|+|.-...
T Consensus 90 ~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl---------~L~ll~~i~~~lr~dlqlIlmSATl~~~~ 160 (819)
T TIGR01970 90 RTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADL---------GLALALDVQSSLREDLKILAMSATLDGER 160 (819)
T ss_pred CCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccch---------HHHHHHHHHHhcCCCceEEEEeCCCCHHH
Confidence 4678999999887643321 11257899999999 4544100 00111112222333 35688999986544
Q ss_pred HH
Q psy13032 115 MA 116 (190)
Q Consensus 115 ~~ 116 (190)
+.
T Consensus 161 l~ 162 (819)
T TIGR01970 161 LS 162 (819)
T ss_pred HH
Confidence 43
No 107
>KOG1132|consensus
Probab=87.54 E-value=0.41 Score=45.28 Aligned_cols=38 Identities=18% Similarity=0.444 Sum_probs=27.3
Q ss_pred CCccEEEecHHHHHhc-HHHhhccCc--cEEEEcccccccC
Q psy13032 37 ASFHVVITSYQLVVSD-FKYFNRIKW--QYLILDEAQAIVD 74 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~-~~~l~~~~w--~~vIvDEaH~lkn 74 (190)
.++|++.+.|..+..- +....++.| .+||+||||+|-.
T Consensus 221 edAdIIF~PYnYLiDp~iR~~~~v~LknsIVIfDEAHNiEd 261 (945)
T KOG1132|consen 221 EDADIIFCPYNYLIDPKIRRSHKVDLKNSIVIFDEAHNIED 261 (945)
T ss_pred ccCcEEEechhhhcCHhhhccccccccccEEEEeccccHHH
Confidence 6789999999988541 222233445 4899999999864
No 108
>KOG1803|consensus
Probab=87.48 E-value=0.59 Score=42.62 Aligned_cols=62 Identities=19% Similarity=0.324 Sum_probs=43.4
Q ss_pred cCCCCCccEEEecHHHHHhcHHHhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCC
Q psy13032 33 HTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQ 112 (190)
Q Consensus 33 ~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~ 112 (190)
........||.+|-..... ..+.+..||.||+|||-.. ...+.|-.+..-+ +++|.|-|.|
T Consensus 333 ~eii~n~~VVfaTl~ga~~--~~~~~~~fD~vIIDEaaQa--------------mE~~cWipvlk~k---k~ILaGDp~Q 393 (649)
T KOG1803|consen 333 KEIISNSRVVFATLGGALD--RLLRKRTFDLVIIDEAAQA--------------MEPQCWIPVLKGK---KFILAGDPKQ 393 (649)
T ss_pred HHhhcccceEEEeccchhh--hhhcccCCCEEEEehhhhh--------------ccchhhhHHhcCC---ceEEeCCccc
Confidence 3445677888888765544 4556678999999999766 3445555554433 8999999987
Q ss_pred C
Q psy13032 113 N 113 (190)
Q Consensus 113 n 113 (190)
-
T Consensus 394 L 394 (649)
T KOG1803|consen 394 L 394 (649)
T ss_pred C
Confidence 4
No 109
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=87.29 E-value=0.97 Score=35.26 Aligned_cols=38 Identities=32% Similarity=0.350 Sum_probs=25.7
Q ss_pred ccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCc-CcEEEEecCCCC
Q psy13032 61 WQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSC-RNRLLLSGTPIQ 112 (190)
Q Consensus 61 w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~-~~r~lLTgTP~~ 112 (190)
.+++|||||..+ ........+..+.. ..++++.|-|-|
T Consensus 94 ~~vliVDEasmv--------------~~~~~~~ll~~~~~~~~klilvGD~~Q 132 (196)
T PF13604_consen 94 KDVLIVDEASMV--------------DSRQLARLLRLAKKSGAKLILVGDPNQ 132 (196)
T ss_dssp TSEEEESSGGG---------------BHHHHHHHHHHS-T-T-EEEEEE-TTS
T ss_pred ccEEEEeccccc--------------CHHHHHHHHHHHHhcCCEEEEECCcch
Confidence 489999999998 44455555555544 679999999987
No 110
>KOG4284|consensus
Probab=86.47 E-value=1.4 Score=40.84 Aligned_cols=98 Identities=16% Similarity=0.160 Sum_probs=63.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcH--HHhhccCccEEEEcccccccCcccccccchh
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDF--KYFNRIKWQYLILDEAQAIVDINVYSYLNDI 84 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~--~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~ 84 (190)
++++.+|.|...-.....+ ...+.|+|-|-+.+.... ..+.--+.++.|+|||.++-.-.
T Consensus 122 g~~csvfIGGT~~~~d~~r----------lk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~-------- 183 (980)
T KOG4284|consen 122 GARCSVFIGGTAHKLDLIR----------LKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTE-------- 183 (980)
T ss_pred CcceEEEecCchhhhhhhh----------hhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchh--------
Confidence 7889999887654443332 256779999999887643 34454567899999999886511
Q ss_pred hhhhhHHHHHHhcCC-cCcEEEEecCCCCCCHHHHHHHHHhhC
Q psy13032 85 EREQSMRWKLLLGFS-CRNRLLLSGTPIQNSMAELWALLHFIM 126 (190)
Q Consensus 85 ~~~~s~~~~~~~~l~-~~~r~lLTgTP~~n~~~el~~ll~fl~ 126 (190)
.-+-.+...+..+. .+..+..|+|=- .+++++.+ .|++
T Consensus 184 -sfq~~In~ii~slP~~rQv~a~SATYp-~nLdn~Ls--k~mr 222 (980)
T KOG4284|consen 184 -SFQDDINIIINSLPQIRQVAAFSATYP-RNLDNLLS--KFMR 222 (980)
T ss_pred -hHHHHHHHHHHhcchhheeeEEeccCc-hhHHHHHH--HHhc
Confidence 12334455666774 455778888864 45666433 4454
No 111
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=86.35 E-value=3.4 Score=39.08 Aligned_cols=38 Identities=18% Similarity=0.228 Sum_probs=27.0
Q ss_pred CCccEEEecHHHHHhcH---------HHhhccCccEEEEcccccccC
Q psy13032 37 ASFHVVITSYQLVVSDF---------KYFNRIKWQYLILDEAQAIVD 74 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~---------~~l~~~~w~~vIvDEaH~lkn 74 (190)
..+||+++|.+.+..+. ..+......++|+||||.|--
T Consensus 163 y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILi 209 (762)
T TIGR03714 163 YNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLL 209 (762)
T ss_pred CCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhh
Confidence 35899999999885421 112234678999999998854
No 112
>KOG1133|consensus
Probab=86.23 E-value=0.58 Score=43.34 Aligned_cols=39 Identities=26% Similarity=0.397 Sum_probs=28.3
Q ss_pred CCCccEEEecHHHHHhcHH--Hh-hccCccEEEEcccccccC
Q psy13032 36 DASFHVVITSYQLVVSDFK--YF-NRIKWQYLILDEAQAIVD 74 (190)
Q Consensus 36 ~~~~dvvitsy~~~~~~~~--~l-~~~~w~~vIvDEaH~lkn 74 (190)
...+++|+-.|..+..+.. .+ ..+.=.+||+||||++-+
T Consensus 321 vp~aqlV~LPYQ~LL~~stR~slgI~LkdsIvIiDEAHNlid 362 (821)
T KOG1133|consen 321 VPQAQLVTLPYQLLLHESTRKSLGISLKDSIVIIDEAHNLID 362 (821)
T ss_pred cccccEEeccHHHHHhHHHHHhcCccccccEEEEechhHHHH
Confidence 4678999999999976432 11 123446899999999876
No 113
>KOG0947|consensus
Probab=86.02 E-value=0.65 Score=44.58 Aligned_cols=61 Identities=23% Similarity=0.385 Sum_probs=40.4
Q ss_pred CCccEEEecHHHHHh----cHHHhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCc--CcEEEEecCC
Q psy13032 37 ASFHVVITSYQLVVS----DFKYFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSC--RNRLLLSGTP 110 (190)
Q Consensus 37 ~~~dvvitsy~~~~~----~~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~--~~r~lLTgTP 110 (190)
.++..+|+|=|.+++ ..+.+.++ +.||+||.|.+-+. ...-.|.-+--+-. ..-++||+|-
T Consensus 378 PeAsCLIMTTEILRsMLYrgadliRDv--E~VIFDEVHYiND~-----------eRGvVWEEViIMlP~HV~~IlLSATV 444 (1248)
T KOG0947|consen 378 PEASCLIMTTEILRSMLYRGADLIRDV--EFVIFDEVHYINDV-----------ERGVVWEEVIIMLPRHVNFILLSATV 444 (1248)
T ss_pred CCcceEeehHHHHHHHHhcccchhhcc--ceEEEeeeeecccc-----------cccccceeeeeeccccceEEEEeccC
Confidence 566788999999987 34556654 55999999999763 33444544433323 3457888874
No 114
>PLN03025 replication factor C subunit; Provisional
Probab=85.84 E-value=2.1 Score=35.90 Aligned_cols=60 Identities=17% Similarity=0.175 Sum_probs=36.4
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCCHHHHHHHHHhhCCCCC
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMF 130 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~~~el~~ll~fl~p~~~ 130 (190)
.+.+||+||+|.+-.. ......+.+.......++++++++...-+..+-+-...+.-..+
T Consensus 99 ~~kviiiDE~d~lt~~-----------aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l 158 (319)
T PLN03025 99 RHKIVILDEADSMTSG-----------AQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRL 158 (319)
T ss_pred CeEEEEEechhhcCHH-----------HHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCC
Confidence 5889999999999541 23334444444455677888887765544555554443333333
No 115
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=84.66 E-value=1.5 Score=43.72 Aligned_cols=63 Identities=16% Similarity=0.125 Sum_probs=37.4
Q ss_pred CccEEEecHHHHHhcHHHhh-ccCccEEEEcccc-cccCcccccccchhhhhhhHH--HHHHhc-CCcCcEEEEecCCCC
Q psy13032 38 SFHVVITSYQLVVSDFKYFN-RIKWQYLILDEAQ-AIVDINVYSYLNDIEREQSMR--WKLLLG-FSCRNRLLLSGTPIQ 112 (190)
Q Consensus 38 ~~dvvitsy~~~~~~~~~l~-~~~w~~vIvDEaH-~lkn~~~~~~~~~~~~~~s~~--~~~~~~-l~~~~r~lLTgTP~~ 112 (190)
...|.++|-+.+.+....-. --..++||+|||| +.-| ..-.. .+.+.. ......+++|+|.-.
T Consensus 156 ~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~------------~D~LL~lLk~il~~rpdLKlIlmSATld~ 223 (1283)
T TIGR01967 156 NTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLN------------IDFLLGYLKQLLPRRPDLKIIITSATIDP 223 (1283)
T ss_pred CceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhcc------------chhHHHHHHHHHhhCCCCeEEEEeCCcCH
Confidence 34688888888876542111 1257899999999 5655 22111 122222 223357899999843
No 116
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=84.63 E-value=1.2 Score=40.82 Aligned_cols=41 Identities=27% Similarity=0.379 Sum_probs=33.7
Q ss_pred cCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCC
Q psy13032 59 IKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQN 113 (190)
Q Consensus 59 ~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n 113 (190)
.++|+||||||.++ ......+.+..++...+++|.|=|-|-
T Consensus 258 l~~dvlIiDEaSMv--------------d~~l~~~ll~al~~~~rlIlvGD~~QL 298 (586)
T TIGR01447 258 LPLDVLVVDEASMV--------------DLPLMAKLLKALPPNTKLILLGDKNQL 298 (586)
T ss_pred CcccEEEEcccccC--------------CHHHHHHHHHhcCCCCEEEEECChhhC
Confidence 46899999999998 555667777788888899999988774
No 117
>KOG0351|consensus
Probab=84.62 E-value=1.9 Score=41.72 Aligned_cols=89 Identities=15% Similarity=0.186 Sum_probs=61.4
Q ss_pred CCCCccEEEecHHHHHhcHHH---hhccC----ccEEEEcccccccCcccccccchhhhhhhHHHHHHhcC----CcCcE
Q psy13032 35 KDASFHVVITSYQLVVSDFKY---FNRIK----WQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGF----SCRNR 103 (190)
Q Consensus 35 ~~~~~dvvitsy~~~~~~~~~---l~~~~----w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l----~~~~r 103 (190)
....++++-.|-|.+...... +.... --++|+||||.+..|.. .=..-|+.+..+ ...-.
T Consensus 353 ~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgH---------dFRp~Yk~l~~l~~~~~~vP~ 423 (941)
T KOG0351|consen 353 GNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGH---------DFRPSYKRLGLLRIRFPGVPF 423 (941)
T ss_pred CCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcc---------cccHHHHHHHHHHhhCCCCCe
Confidence 335789999999999875432 22222 47899999998876532 223334444443 23347
Q ss_pred EEEecCCCCCCHHHHHHHHHhhCCCCCCC
Q psy13032 104 LLLSGTPIQNSMAELWALLHFIMPSMFDS 132 (190)
Q Consensus 104 ~lLTgTP~~n~~~el~~ll~fl~p~~~~~ 132 (190)
+.||+|--..--+|+...|.+-.|..+.+
T Consensus 424 iALTATAT~~v~~DIi~~L~l~~~~~~~~ 452 (941)
T KOG0351|consen 424 IALTATATERVREDVIRSLGLRNPELFKS 452 (941)
T ss_pred EEeehhccHHHHHHHHHHhCCCCcceecc
Confidence 89999999898999999899888876543
No 118
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=84.50 E-value=0.97 Score=39.10 Aligned_cols=39 Identities=26% Similarity=0.385 Sum_probs=28.5
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCC
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQ 112 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~ 112 (190)
+=..||+||||++.. ...-..+.+.-...++.|||-|.|
T Consensus 351 ~~~FiIIDEaQNLTp--------------heikTiltR~G~GsKIVl~gd~aQ 389 (436)
T COG1875 351 PDSFIIIDEAQNLTP--------------HELKTILTRAGEGSKIVLTGDPAQ 389 (436)
T ss_pred ccceEEEehhhccCH--------------HHHHHHHHhccCCCEEEEcCCHHH
Confidence 446899999999943 333344455567789999998876
No 119
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=84.49 E-value=1.7 Score=41.47 Aligned_cols=70 Identities=11% Similarity=0.103 Sum_probs=39.0
Q ss_pred CccEEEecHHHHHhcHHHh-hccCccEEEEccccc-ccCcccccccchhhhhhhHHHHHHhcCCc-CcEEEEecCCCCCC
Q psy13032 38 SFHVVITSYQLVVSDFKYF-NRIKWQYLILDEAQA-IVDINVYSYLNDIEREQSMRWKLLLGFSC-RNRLLLSGTPIQNS 114 (190)
Q Consensus 38 ~~dvvitsy~~~~~~~~~l-~~~~w~~vIvDEaH~-lkn~~~~~~~~~~~~~~s~~~~~~~~l~~-~~r~lLTgTP~~n~ 114 (190)
..+|+++|.+.+.+....- .--.+++||+||+|. .-+.+ . .-....+.+..++. ...++||+|.-...
T Consensus 93 ~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~D--l-------~L~ll~~i~~~lr~~lqlilmSATl~~~~ 163 (812)
T PRK11664 93 NTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQAD--L-------ALALLLDVQQGLRDDLKLLIMSATLDNDR 163 (812)
T ss_pred CCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccc--h-------HHHHHHHHHHhCCccceEEEEecCCCHHH
Confidence 3478999999887643311 113578999999996 22200 0 00111122233333 35699999986543
Q ss_pred HH
Q psy13032 115 MA 116 (190)
Q Consensus 115 ~~ 116 (190)
+.
T Consensus 164 l~ 165 (812)
T PRK11664 164 LQ 165 (812)
T ss_pred HH
Confidence 43
No 120
>PF13173 AAA_14: AAA domain
Probab=84.14 E-value=1.6 Score=31.41 Aligned_cols=40 Identities=20% Similarity=0.230 Sum_probs=25.4
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCC
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQ 112 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~ 112 (190)
+-.+|++||+|++.+ .....-.... -.....+++||.-..
T Consensus 61 ~~~~i~iDEiq~~~~------------~~~~lk~l~d-~~~~~~ii~tgS~~~ 100 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD------------WEDALKFLVD-NGPNIKIILTGSSSS 100 (128)
T ss_pred CCcEEEEehhhhhcc------------HHHHHHHHHH-hccCceEEEEccchH
Confidence 457899999999987 2222222222 224568999996543
No 121
>KOG0338|consensus
Probab=84.05 E-value=1.9 Score=38.95 Aligned_cols=98 Identities=18% Similarity=0.195 Sum_probs=55.2
Q ss_pred CccCCCCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHH---hhccCccEEEEcccccccCcccc
Q psy13032 2 ERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY---FNRIKWQYLILDEAQAIVDINVY 78 (190)
Q Consensus 2 ~k~~p~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~---l~~~~w~~vIvDEaH~lkn~~~~ 78 (190)
.+|+ ++.|-...|.-.-+..-.- -...+||||.|.+.+.-+..- |.--...++|+|||.||-...
T Consensus 276 aqFt-~I~~~L~vGGL~lk~QE~~---------LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeeg-- 343 (691)
T KOG0338|consen 276 AQFT-DITVGLAVGGLDLKAQEAV---------LRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEG-- 343 (691)
T ss_pred Hhhc-cceeeeeecCccHHHHHHH---------HhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHH--
Confidence 4555 4677666665433221100 015689999999977654332 222245689999999996411
Q ss_pred cccchhhhhhhHHHHHHhcC-CcCcEEEEecCCCCCCHHHHHH
Q psy13032 79 SYLNDIEREQSMRWKLLLGF-SCRNRLLLSGTPIQNSMAELWA 120 (190)
Q Consensus 79 ~~~~~~~~~~s~~~~~~~~l-~~~~r~lLTgTP~~n~~~el~~ 120 (190)
=.......+... +.+.-+|.|+|. ...+.||-+
T Consensus 344 --------FademnEii~lcpk~RQTmLFSATM-teeVkdL~s 377 (691)
T KOG0338|consen 344 --------FADEMNEIIRLCPKNRQTMLFSATM-TEEVKDLAS 377 (691)
T ss_pred --------HHHHHHHHHHhccccccceeehhhh-HHHHHHHHH
Confidence 222233333222 233458888885 456777655
No 122
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=84.00 E-value=5.3 Score=34.43 Aligned_cols=54 Identities=28% Similarity=0.296 Sum_probs=31.6
Q ss_pred EEEecHHHHHhcHHHhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhc-C-CcCcEEEEecCCC
Q psy13032 41 VVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLG-F-SCRNRLLLSGTPI 111 (190)
Q Consensus 41 vvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~-l-~~~~r~lLTgTP~ 111 (190)
||-||+..++- .-.||++|+||..-+-=.. ..+- .-++.. . .....+.||+||-
T Consensus 189 vVaTtHQLlrF------k~aFD~liIDEVDAFP~~~----------d~~L-~~Av~~ark~~g~~IylTATp~ 244 (441)
T COG4098 189 VVATTHQLLRF------KQAFDLLIIDEVDAFPFSD----------DQSL-QYAVKKARKKEGATIYLTATPT 244 (441)
T ss_pred EEEehHHHHHH------HhhccEEEEeccccccccC----------CHHH-HHHHHHhhcccCceEEEecCCh
Confidence 45556555542 2368999999997653210 2222 223332 2 2346899999996
No 123
>COG4646 DNA methylase [Transcription / DNA replication, recombination, and repair]
Probab=82.08 E-value=0.77 Score=40.73 Aligned_cols=32 Identities=28% Similarity=0.540 Sum_probs=28.5
Q ss_pred cCcEEEEecCCCCCCHHHHHHHHHhhCCCCCC
Q psy13032 100 CRNRLLLSGTPIQNSMAELWALLHFIMPSMFD 131 (190)
Q Consensus 100 ~~~r~lLTgTP~~n~~~el~~ll~fl~p~~~~ 131 (190)
.+...++||||+.|.+-|+|++.+++.++.+-
T Consensus 473 G~~L~l~sgTpi~ntlgem~~vqRyl~~~al~ 504 (637)
T COG4646 473 GRALVLASGTPITNTLGEMFSVQRYLGAGALY 504 (637)
T ss_pred CCeEEecCCCchhhhHHhhhhhhhhcCccHHH
Confidence 45678999999999999999999999998753
No 124
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=82.04 E-value=1.5 Score=41.51 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=29.6
Q ss_pred cCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCC
Q psy13032 59 IKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQN 113 (190)
Q Consensus 59 ~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n 113 (190)
-.|.++||||+|+|.+. ......+.+..-....+++|+.|-.+.
T Consensus 118 gr~KVIIIDEah~LT~~-----------A~NALLKtLEEPP~~v~FILaTtd~~K 161 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNH-----------AFNAMLKTLEEPPPHVKFILATTDPQK 161 (830)
T ss_pred CCceEEEEeChhhCCHH-----------HHHHHHHHHHhcCCCeEEEEEECChhh
Confidence 36899999999999651 223455555555556788888775443
No 125
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=81.97 E-value=3.7 Score=37.73 Aligned_cols=78 Identities=17% Similarity=0.151 Sum_probs=48.7
Q ss_pred CCCCccEEEecHHHHHhcH---HHhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcC-CcCcEEEEecCC
Q psy13032 35 KDASFHVVITSYQLVVSDF---KYFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGF-SCRNRLLLSGTP 110 (190)
Q Consensus 35 ~~~~~dvvitsy~~~~~~~---~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l-~~~~r~lLTgTP 110 (190)
...++||+|-||+-+--.. ..+- ....||+||.|.+.....+-.++++ ...++.+ ..-..+.||+|-
T Consensus 312 t~~dADIIVGTYEGiD~lLRtg~~lg--diGtVVIDEiHtL~deERG~RLdGL-------I~RLr~l~~~AQ~i~LSATV 382 (830)
T COG1202 312 TSPDADIIVGTYEGIDYLLRTGKDLG--DIGTVVIDEIHTLEDEERGPRLDGL-------IGRLRYLFPGAQFIYLSATV 382 (830)
T ss_pred CCCCCcEEEeechhHHHHHHcCCccc--ccceEEeeeeeeccchhcccchhhH-------HHHHHHhCCCCeEEEEEeec
Confidence 4578999999999664211 1111 4578999999999875433332222 1122222 234578899996
Q ss_pred CCCCHHHHHHHHH
Q psy13032 111 IQNSMAELWALLH 123 (190)
Q Consensus 111 ~~n~~~el~~ll~ 123 (190)
.|+.||-.-+.
T Consensus 383 --gNp~elA~~l~ 393 (830)
T COG1202 383 --GNPEELAKKLG 393 (830)
T ss_pred --CChHHHHHHhC
Confidence 67888876655
No 126
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=81.81 E-value=2.4 Score=41.23 Aligned_cols=69 Identities=14% Similarity=0.247 Sum_probs=42.6
Q ss_pred CCccEEEecHHHHHhc----HHHhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcC--CcCcEEEEecCC
Q psy13032 37 ASFHVVITSYQLVVSD----FKYFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGF--SCRNRLLLSGTP 110 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~----~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l--~~~~r~lLTgTP 110 (190)
+++.++|.|=|.+++- .+.+. +-..||+||.|.|... ...-.+.-+.-+ ..-..++||+|=
T Consensus 204 ~~A~clvMTTEILRnMlyrg~~~~~--~i~~ViFDEvHyi~D~-----------eRG~VWEE~Ii~lP~~v~~v~LSATv 270 (1041)
T COG4581 204 PDAPCLVMTTEILRNMLYRGSESLR--DIEWVVFDEVHYIGDR-----------ERGVVWEEVIILLPDHVRFVFLSATV 270 (1041)
T ss_pred CCCceEEeeHHHHHHHhccCccccc--ccceEEEEeeeecccc-----------ccchhHHHHHHhcCCCCcEEEEeCCC
Confidence 4555666555888862 22333 3466999999999874 344445544433 334789999995
Q ss_pred CCCCHHHHHH
Q psy13032 111 IQNSMAELWA 120 (190)
Q Consensus 111 ~~n~~~el~~ 120 (190)
.+..||-.
T Consensus 271 --~N~~EF~~ 278 (1041)
T COG4581 271 --PNAEEFAE 278 (1041)
T ss_pred --CCHHHHHH
Confidence 34444433
No 127
>PRK04296 thymidine kinase; Provisional
Probab=81.72 E-value=3.4 Score=31.97 Aligned_cols=15 Identities=33% Similarity=0.390 Sum_probs=13.0
Q ss_pred cCccEEEEccccccc
Q psy13032 59 IKWQYLILDEAQAIV 73 (190)
Q Consensus 59 ~~w~~vIvDEaH~lk 73 (190)
-.+++||+||||.+.
T Consensus 77 ~~~dvviIDEaq~l~ 91 (190)
T PRK04296 77 EKIDCVLIDEAQFLD 91 (190)
T ss_pred CCCCEEEEEccccCC
Confidence 478999999999883
No 128
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=81.62 E-value=2.1 Score=40.24 Aligned_cols=41 Identities=32% Similarity=0.376 Sum_probs=31.9
Q ss_pred cCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCC
Q psy13032 59 IKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQN 113 (190)
Q Consensus 59 ~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n 113 (190)
...+++|||||+++- .......+..++...+++|-|=|-|-
T Consensus 415 ~~~~llIvDEaSMvd--------------~~~~~~Ll~~~~~~~rlilvGD~~QL 455 (720)
T TIGR01448 415 IDCDLLIVDESSMMD--------------TWLALSLLAALPDHARLLLVGDTDQL 455 (720)
T ss_pred ccCCEEEEeccccCC--------------HHHHHHHHHhCCCCCEEEEECccccc
Confidence 457899999999994 34456666777778899999988774
No 129
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=81.47 E-value=1.8 Score=39.96 Aligned_cols=41 Identities=22% Similarity=0.340 Sum_probs=34.6
Q ss_pred cCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCC
Q psy13032 59 IKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQN 113 (190)
Q Consensus 59 ~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n 113 (190)
.+.|+||||||.++ .....+..+..++...|++|-|=|-|-
T Consensus 264 l~~dvlIvDEaSMv--------------d~~lm~~ll~al~~~~rlIlvGD~~QL 304 (615)
T PRK10875 264 LHLDVLVVDEASMV--------------DLPMMARLIDALPPHARVIFLGDRDQL 304 (615)
T ss_pred CCCCeEEEChHhcc--------------cHHHHHHHHHhcccCCEEEEecchhhc
Confidence 46799999999998 566677788888888999999988774
No 130
>KOG1131|consensus
Probab=80.78 E-value=1.5 Score=39.75 Aligned_cols=38 Identities=18% Similarity=0.311 Sum_probs=25.7
Q ss_pred CCccEEEecHHHHHh--cHHHh-hccC-ccEEEEcccccccC
Q psy13032 37 ASFHVVITSYQLVVS--DFKYF-NRIK-WQYLILDEAQAIVD 74 (190)
Q Consensus 37 ~~~dvvitsy~~~~~--~~~~l-~~~~-w~~vIvDEaH~lkn 74 (190)
.-++|||=||+.+.- -.+.. .+.. =.+||+||||+|-|
T Consensus 198 ~~~nvivYsYhYllDPkIa~~VSkels~~svVvFDEAHNIDn 239 (755)
T KOG1131|consen 198 PFANVIVYSYHYLLDPKIAELVSKELSKESVVVFDEAHNIDN 239 (755)
T ss_pred hcccEEEEehhhhcChHHHHHHHHhhCcCcEEEecccccccc
Confidence 568999999998753 11111 2222 35788999999987
No 131
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=79.62 E-value=1.3 Score=37.86 Aligned_cols=43 Identities=21% Similarity=0.297 Sum_probs=32.8
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCCHH
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNSMA 116 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~~~ 116 (190)
.=-.||+||||+- ...+.-..+.+|-...+..+||.+.|-++.
T Consensus 243 ~dAfVIlDEaQNt--------------T~~QmKMfLTRiGf~skmvItGD~tQiDLp 285 (348)
T COG1702 243 NDAFVILDEAQNT--------------TVGQMKMFLTRIGFESKMVITGDITQIDLP 285 (348)
T ss_pred CCeEEEEeccccc--------------chhhhceeeeeecCCceEEEEcCcccccCC
Confidence 3457999999982 455555667778888999999999886544
No 132
>KOG0337|consensus
Probab=78.76 E-value=2.4 Score=37.31 Aligned_cols=65 Identities=18% Similarity=0.200 Sum_probs=44.0
Q ss_pred CCccEEEecHHHHHhcHHH--hhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCc-CcEEEEecCCC
Q psy13032 37 ASFHVVITSYQLVVSDFKY--FNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSC-RNRLLLSGTPI 111 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~~~--l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~-~~r~lLTgTP~ 111 (190)
...|+||.|-+.+....-. +.--...+||+|||.+|-.- +.+-+..+.+.+++. ..-+++|||--
T Consensus 139 ~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfem----------gfqeql~e~l~rl~~~~QTllfSatlp 206 (529)
T KOG0337|consen 139 ENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEM----------GFQEQLHEILSRLPESRQTLLFSATLP 206 (529)
T ss_pred cCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhh----------hhHHHHHHHHHhCCCcceEEEEeccCc
Confidence 4689999888766542211 11224678999999988541 156677778888854 45789999853
No 133
>KOG0948|consensus
Probab=78.18 E-value=1.6 Score=41.01 Aligned_cols=37 Identities=16% Similarity=0.386 Sum_probs=28.3
Q ss_pred CCccEEEecHHHHHh----cHHHhhccCccEEEEcccccccCc
Q psy13032 37 ASFHVVITSYQLVVS----DFKYFNRIKWQYLILDEAQAIVDI 75 (190)
Q Consensus 37 ~~~dvvitsy~~~~~----~~~~l~~~~w~~vIvDEaH~lkn~ 75 (190)
+++--+|+|=|.++. ..+.+.++.| ||+||.|.|+..
T Consensus 210 P~ASCLVMTTEILRsMLYRGSEvmrEVaW--VIFDEIHYMRDk 250 (1041)
T KOG0948|consen 210 PDASCLVMTTEILRSMLYRGSEVMREVAW--VIFDEIHYMRDK 250 (1041)
T ss_pred CCCceeeeHHHHHHHHHhccchHhheeee--EEeeeehhcccc
Confidence 445556778888886 4567777777 999999999973
No 134
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=77.81 E-value=4.6 Score=34.63 Aligned_cols=54 Identities=17% Similarity=0.207 Sum_probs=31.6
Q ss_pred HHHHHhcHHHhh----ccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcE-EEEecCC
Q psy13032 46 YQLVVSDFKYFN----RIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNR-LLLSGTP 110 (190)
Q Consensus 46 y~~~~~~~~~l~----~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r-~lLTgTP 110 (190)
.+.++.-.+++. .-.|.+|||||||.|-.. ......+.+.....+.. +++|..|
T Consensus 123 vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~-----------aanaLLk~LEEpp~~~~fiLit~~~ 181 (351)
T PRK09112 123 VDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRN-----------AANAILKTLEEPPARALFILISHSS 181 (351)
T ss_pred HHHHHHHHHHhhhccccCCceEEEEEchhhcCHH-----------HHHHHHHHHhcCCCCceEEEEECCh
Confidence 455554444443 236999999999999531 33345566665544444 4455444
No 135
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=76.99 E-value=3.1 Score=34.94 Aligned_cols=49 Identities=18% Similarity=0.175 Sum_probs=29.2
Q ss_pred HHhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCc--CcEEEEecCC
Q psy13032 54 KYFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSC--RNRLLLSGTP 110 (190)
Q Consensus 54 ~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~--~~r~lLTgTP 110 (190)
..+..++-.++|+||.|++-..... .+.....+++.|.- +--+.+.||+
T Consensus 139 ~llr~~~vrmLIIDE~H~lLaGs~~--------~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 139 RLLRRLGVRMLIIDEFHNLLAGSYR--------KQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHcCCcEEEeechHHHhcccHH--------HHHHHHHHHHHHhhccCCCeEEeccH
Confidence 4566788999999999997542211 33333334444422 2236677877
No 136
>KOG0347|consensus
Probab=76.92 E-value=11 Score=34.64 Aligned_cols=86 Identities=22% Similarity=0.225 Sum_probs=52.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHH----Hhhcc-CccEEEEcccccccCcccccc
Q psy13032 6 PDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK----YFNRI-KWQYLILDEAQAIVDINVYSY 80 (190)
Q Consensus 6 p~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~----~l~~~-~w~~vIvDEaH~lkn~~~~~~ 80 (190)
++++|..+.|.-..-+.-+- -. ..+||||.|.+.+-.... .+..+ ...++|+|||.||-.
T Consensus 290 t~i~v~si~GGLavqKQqRl-------L~--~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmve------ 354 (731)
T KOG0347|consen 290 TQIRVASITGGLAVQKQQRL-------LN--QRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVE------ 354 (731)
T ss_pred cCeEEEEeechhHHHHHHHH-------Hh--cCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhh------
Confidence 58889988887644332110 01 268999999987754222 22222 357999999999965
Q ss_pred cchhhhhhhHHHHHHhcCC------cCcEEEEecCC
Q psy13032 81 LNDIEREQSMRWKLLLGFS------CRNRLLLSGTP 110 (190)
Q Consensus 81 ~~~~~~~~s~~~~~~~~l~------~~~r~lLTgTP 110 (190)
+|+-....+.+..|. -+.-++.|+|-
T Consensus 355 ----kghF~Els~lL~~L~e~~~~~qrQTlVFSATl 386 (731)
T KOG0347|consen 355 ----KGHFEELSKLLKHLNEEQKNRQRQTLVFSATL 386 (731)
T ss_pred ----hccHHHHHHHHHHhhhhhcccccceEEEEEEe
Confidence 225555555555553 12347777775
No 137
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=76.70 E-value=2.7 Score=40.70 Aligned_cols=90 Identities=14% Similarity=0.198 Sum_probs=58.2
Q ss_pred CccEEEecHHHHHhcH------HHh----hccCc-------cEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCc
Q psy13032 38 SFHVVITSYQLVVSDF------KYF----NRIKW-------QYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSC 100 (190)
Q Consensus 38 ~~dvvitsy~~~~~~~------~~l----~~~~w-------~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~ 100 (190)
...|+|+|.+.+.++. +.+ ...+| -+||+||+|++.. ..+.++++..++.
T Consensus 162 ~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~-------------~~k~~~~i~~lnp 228 (986)
T PRK15483 162 TIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPR-------------DNKFYQAIEALKP 228 (986)
T ss_pred ceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCc-------------chHHHHHHHhcCc
Confidence 4689999999887631 111 11234 3799999999964 2346688899999
Q ss_pred CcEEEEecCCCC-------CCHH--HHHHHHHhhCCCCCCChHHHHHHHhhhhh
Q psy13032 101 RNRLLLSGTPIQ-------NSMA--ELWALLHFIMPSMFDSHDEFNEWFSKDIE 145 (190)
Q Consensus 101 ~~r~lLTgTP~~-------n~~~--el~~ll~fl~p~~~~~~~~F~~~~~~~~~ 145 (190)
...+.-|||--. |+.. +.+.|+-= |...++|.....+-|.
T Consensus 229 l~~lrysAT~~~~~~~~g~~~~~~~d~~NlvY~-----LdavdAyn~~LVK~I~ 277 (986)
T PRK15483 229 QMIIRFGATFPDITEGKGKNKCTRKDYYNLQFD-----LNAVDSFNDGLVKGVD 277 (986)
T ss_pred ccEEEEeeecCCccccccccccccccccCceee-----cCHHHHHHhCCcceEE
Confidence 888889999754 2222 24443332 4456777776665554
No 138
>KOG0339|consensus
Probab=76.66 E-value=13 Score=33.73 Aligned_cols=85 Identities=22% Similarity=0.302 Sum_probs=48.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHH--hhccCccEEEEcccccccCcccccccchh
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY--FNRIKWQYLILDEAQAIVDINVYSYLNDI 84 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~--l~~~~w~~vIvDEaH~lkn~~~~~~~~~~ 84 (190)
+++++..+|.......... + + ..+.+||+|-+.+...... ..-..-.++|+|||.+|-...
T Consensus 324 gl~~v~~ygGgsk~eQ~k~------L--k-~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmG-------- 386 (731)
T KOG0339|consen 324 GLRVVAVYGGGSKWEQSKE------L--K-EGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMG-------- 386 (731)
T ss_pred cceEEEeecCCcHHHHHHh------h--h-cCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccc--------
Confidence 6888876665544433322 1 1 4578999999977643321 111245689999999986522
Q ss_pred hhhhhHHHHHHhcCCcCc-EEEEecCC
Q psy13032 85 EREQSMRWKLLLGFSCRN-RLLLSGTP 110 (190)
Q Consensus 85 ~~~~s~~~~~~~~l~~~~-r~lLTgTP 110 (190)
-..+.-.....++.++ .++.++|-
T Consensus 387 --fe~qVrSI~~hirpdrQtllFsaTf 411 (731)
T KOG0339|consen 387 --FEPQVRSIKQHIRPDRQTLLFSATF 411 (731)
T ss_pred --cHHHHHHHHhhcCCcceEEEeeccc
Confidence 2222223334455544 56666664
No 139
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=76.33 E-value=3.7 Score=39.47 Aligned_cols=57 Identities=12% Similarity=0.068 Sum_probs=35.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHH----hcH-----HHhhccCccEEEEcccccccC
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVV----SDF-----KYFNRIKWQYLILDEAQAIVD 74 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~----~~~-----~~l~~~~w~~vIvDEaH~lkn 74 (190)
+++|.+..|.......... -.+||++.|-+.+. ++. +...+....++|||||+.+--
T Consensus 151 GLtv~~i~gg~~~~~r~~~-----------y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLI 216 (896)
T PRK13104 151 GLTVGVIYPDMSHKEKQEA-----------YKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILI 216 (896)
T ss_pred CceEEEEeCCCCHHHHHHH-----------hCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhh
Confidence 6788877765322221111 25799999977762 111 112235789999999998854
No 140
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=76.13 E-value=3.8 Score=30.89 Aligned_cols=41 Identities=22% Similarity=0.238 Sum_probs=29.2
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCC
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPI 111 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~ 111 (190)
.+.++|+||||+|... ......+.+..-....+++|+.+=.
T Consensus 102 ~~KviiI~~ad~l~~~-----------a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 102 KYKVIIIDEADKLTEE-----------AQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp SSEEEEEETGGGS-HH-----------HHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred CceEEEeehHhhhhHH-----------HHHHHHHHhcCCCCCEEEEEEECCh
Confidence 5889999999999642 5556667777777777887776543
No 141
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=75.80 E-value=3 Score=38.70 Aligned_cols=42 Identities=21% Similarity=0.328 Sum_probs=28.4
Q ss_pred HHhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCC
Q psy13032 54 KYFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQ 112 (190)
Q Consensus 54 ~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~ 112 (190)
..+....||+||+|||-.+.. +. ..-.+. .+ .+++|-|=|.|
T Consensus 355 ~~l~~~~Fd~vIIDEAsQ~~e------------p~--~lipl~--~~-~~~vLvGD~~Q 396 (637)
T TIGR00376 355 AGLKGWEFDVAVIDEASQAME------------PS--CLIPLL--KA-RKLILAGDHKQ 396 (637)
T ss_pred HhhccCCCCEEEEECccccch------------HH--HHHHHh--hC-CeEEEecChhh
Confidence 456778999999999977654 32 222221 22 47888898887
No 142
>KOG0340|consensus
Probab=75.58 E-value=7.7 Score=33.55 Aligned_cols=91 Identities=19% Similarity=0.186 Sum_probs=50.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHH------hhccCccEEEEcccccccCcccccc
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY------FNRIKWQYLILDEAQAIVDINVYSY 80 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~------l~~~~w~~vIvDEaH~lkn~~~~~~ 80 (190)
.+++-++.|....-..... -....|+||+|-+.+.-.... ..--.-..+|+|||.++-+..
T Consensus 103 ~lK~~vivGG~d~i~qa~~---------L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~---- 169 (442)
T KOG0340|consen 103 NLKVSVIVGGTDMIMQAAI---------LSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGC---- 169 (442)
T ss_pred cceEEEEEccHHHhhhhhh---------cccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccc----
Confidence 5677777776543322211 235789999999877542221 111134689999999997631
Q ss_pred cchhhhhhhHHHHHH-hcCCc-CcEEEEecCCCCCCHHHH
Q psy13032 81 LNDIEREQSMRWKLL-LGFSC-RNRLLLSGTPIQNSMAEL 118 (190)
Q Consensus 81 ~~~~~~~~s~~~~~~-~~l~~-~~r~lLTgTP~~n~~~el 118 (190)
-......+ ..++. +.-+++|+|- .+.+.++
T Consensus 170 -------f~d~L~~i~e~lP~~RQtLlfSATi-td~i~ql 201 (442)
T KOG0340|consen 170 -------FPDILEGIEECLPKPRQTLLFSATI-TDTIKQL 201 (442)
T ss_pred -------hhhHHhhhhccCCCccceEEEEeeh-hhHHHHh
Confidence 12222222 23333 3568899885 3444443
No 143
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=75.56 E-value=6.7 Score=30.23 Aligned_cols=60 Identities=12% Similarity=0.183 Sum_probs=37.3
Q ss_pred HhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCCHHHHHHHHHhh
Q psy13032 55 YFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFI 125 (190)
Q Consensus 55 ~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~~~el~~ll~fl 125 (190)
.+..-.+|+||+||.-..-+.. -+ +.......+..-+...-++|||.-. +.+|..+-+++
T Consensus 92 ~l~~~~~DlvVLDEi~~A~~~g------li--~~~~v~~lL~~rp~~~evVlTGR~~---p~~l~e~AD~V 151 (173)
T TIGR00708 92 MLADPELDLVLLDELTYALKYG------YL--DVEEVVEALQERPGHQHVIITGRGC---PQDLLELADLV 151 (173)
T ss_pred HHhcCCCCEEEehhhHHHHHCC------Cc--CHHHHHHHHHhCCCCCEEEEECCCC---CHHHHHhCcee
Confidence 3445689999999996443311 11 4445666666666667899999644 45544444433
No 144
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=75.52 E-value=6.8 Score=30.37 Aligned_cols=58 Identities=16% Similarity=0.236 Sum_probs=36.7
Q ss_pred hhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCCHHHHHHHHHh
Q psy13032 56 FNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHF 124 (190)
Q Consensus 56 l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~~~el~~ll~f 124 (190)
+.+-.||+||+||.-..-+.. -+ +.......+..-+...-++|||- |-+.+|..+-++
T Consensus 111 l~~~~~dlvVLDEi~~Al~~g------li--~~eeVl~~L~~rp~~~evILTGR---~~p~~Lie~AD~ 168 (178)
T PRK07414 111 VDEGRYSLVVLDELSLAIQFG------LI--PETEVLEFLEKRPSHVDVILTGP---EMPESLLAIADQ 168 (178)
T ss_pred HhCCCCCEEEEehhHHHHHCC------Cc--cHHHHHHHHHhCCCCCEEEEECC---CCCHHHHHhCCe
Confidence 345689999999986544321 11 44556666666666678999995 455555444443
No 145
>KOG0336|consensus
Probab=75.38 E-value=6.8 Score=34.59 Aligned_cols=70 Identities=17% Similarity=0.259 Sum_probs=45.4
Q ss_pred CCccEEEecHHHHHhcH--HHhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCC
Q psy13032 37 ASFHVVITSYQLVVSDF--KYFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNS 114 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~--~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~ 114 (190)
..++++|++...+.... ..+.-...-++|+|||.+|-.-. -.-++.+.+..++..+...||.---+.+
T Consensus 342 rgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMg----------FEpqIrkilldiRPDRqtvmTSATWP~~ 411 (629)
T KOG0336|consen 342 RGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMG----------FEPQIRKILLDIRPDRQTVMTSATWPEG 411 (629)
T ss_pred cCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhccc----------ccHHHHHHhhhcCCcceeeeecccCchH
Confidence 56889999988765421 12222356789999999997632 4566778888887777666554433333
Q ss_pred HH
Q psy13032 115 MA 116 (190)
Q Consensus 115 ~~ 116 (190)
+.
T Consensus 412 Vr 413 (629)
T KOG0336|consen 412 VR 413 (629)
T ss_pred HH
Confidence 33
No 146
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=75.07 E-value=5.7 Score=37.79 Aligned_cols=55 Identities=16% Similarity=0.215 Sum_probs=35.1
Q ss_pred CCeEEEEeCCHH---HHHHHHHHhhhhcccCCCCCccEEEecHHHH-----HhcH----HHhhccCccEEEEcccccccC
Q psy13032 7 DFKVVPYWGSPQ---ERKILRQFWDMKNLHTKDASFHVVITSYQLV-----VSDF----KYFNRIKWQYLILDEAQAIVD 74 (190)
Q Consensus 7 ~l~v~~~~G~~~---~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~-----~~~~----~~l~~~~w~~vIvDEaH~lkn 74 (190)
+++|.++.|... +|+.. ..+||+++|...+ +... ........+++|||||+++-=
T Consensus 147 Gl~v~~i~g~~~~~~~r~~~-------------y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLi 213 (790)
T PRK09200 147 GLTVGLNFSDIDDASEKKAI-------------YEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILL 213 (790)
T ss_pred CCeEEEEeCCCCcHHHHHHh-------------cCCCEEEECCccccchhHHhccccchhhhcccccceEEEecccccee
Confidence 688888777543 23211 3489999995444 4321 123345788999999998864
No 147
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=74.42 E-value=3.5 Score=38.29 Aligned_cols=43 Identities=19% Similarity=0.156 Sum_probs=27.8
Q ss_pred cCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCC
Q psy13032 59 IKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQ 112 (190)
Q Consensus 59 ~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~ 112 (190)
-.|.++|+||+|+|... ......+.+..-....+++|+.|-.+
T Consensus 118 g~~KV~IIDEah~Ls~~-----------a~NALLKtLEEPp~~v~FIL~Tt~~~ 160 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRH-----------SFNALLKTLEEPPEHVKFLLATTDPQ 160 (647)
T ss_pred CCCEEEEEechHhCCHH-----------HHHHHHHHHHcCCCCeEEEEecCCcc
Confidence 36889999999999541 33444555555455567777755433
No 148
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=74.29 E-value=3.8 Score=38.66 Aligned_cols=57 Identities=9% Similarity=0.062 Sum_probs=34.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHH-----Hhc----HHHhhccCccEEEEcccccccC
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLV-----VSD----FKYFNRIKWQYLILDEAQAIVD 74 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~-----~~~----~~~l~~~~w~~vIvDEaH~lkn 74 (190)
+++|.+..|......... .-.+||++.|...+ +.. .+.+......++|+||+|++--
T Consensus 125 GLsv~~i~g~~~~~~r~~-----------~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LI 190 (745)
T TIGR00963 125 GLSVGLILSGMSPEERRE-----------AYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILI 190 (745)
T ss_pred CCeEEEEeCCCCHHHHHH-----------hcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhH
Confidence 588887776532211111 12479999987655 222 1223445688999999999864
No 149
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=74.15 E-value=8.3 Score=36.05 Aligned_cols=56 Identities=13% Similarity=0.075 Sum_probs=31.6
Q ss_pred HHHHHhcHHHhh----ccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCC
Q psy13032 46 YQLVVSDFKYFN----RIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQ 112 (190)
Q Consensus 46 y~~~~~~~~~l~----~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~ 112 (190)
.+.++...+.+. .-.|.++||||+|+|... ......+.+..-....+++|+.|=.+
T Consensus 106 VDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~-----------AaNALLKTLEEPP~~v~FILaTtep~ 165 (700)
T PRK12323 106 VDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNH-----------AFNAMLKTLEEPPEHVKFILATTDPQ 165 (700)
T ss_pred HHHHHHHHHHHHhchhcCCceEEEEEChHhcCHH-----------HHHHHHHhhccCCCCceEEEEeCChH
Confidence 455554333322 346899999999999531 22233343433344557777776433
No 150
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=73.99 E-value=6.4 Score=30.87 Aligned_cols=60 Identities=12% Similarity=0.176 Sum_probs=37.5
Q ss_pred HhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCCHHHHHHHHHhh
Q psy13032 55 YFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFI 125 (190)
Q Consensus 55 ~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~~~el~~ll~fl 125 (190)
.+..-.||+||+||.-..-+.. -+ +.......+..-+...-++|||.- -+.+|..+-+++
T Consensus 110 ~l~~~~ydlvVLDEi~~Al~~g------li--~~eevi~~L~~rp~~~evVlTGR~---~p~~Lie~ADlV 169 (191)
T PRK05986 110 MLADESYDLVVLDELTYALKYG------YL--DVEEVLEALNARPGMQHVVITGRG---APRELIEAADLV 169 (191)
T ss_pred HHhCCCCCEEEEehhhHHHHCC------Cc--cHHHHHHHHHcCCCCCEEEEECCC---CCHHHHHhCchh
Confidence 3445689999999986544321 11 455566666665666789999964 444444444433
No 151
>PHA00673 acetyltransferase domain containing protein
Probab=73.89 E-value=7.6 Score=29.37 Aligned_cols=44 Identities=9% Similarity=-0.011 Sum_probs=34.8
Q ss_pred ccEEEEcccccccCcccccccchhhhhhhHHHHHHhcC---CcCcEEEEecCCCCCCHH
Q psy13032 61 WQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGF---SCRNRLLLSGTPIQNSMA 116 (190)
Q Consensus 61 w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l---~~~~r~lLTgTP~~n~~~ 116 (190)
.+-|.|++.||=+. ..+.....+... ..-++|-+|+||-.|.++
T Consensus 88 Ie~l~V~~~~RGqG------------IG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~ 134 (154)
T PHA00673 88 TESIFVAAAHRPGG------------AGMALLRATEALARDLGATGLYVSGPTEGRLVQ 134 (154)
T ss_pred EEEEEEChhccCCC------------HHHHHHHHHHHHHHHCCCCEEEEecCCCccchH
Confidence 56788999998776 777777766655 456799999999999876
No 152
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.72 E-value=3.7 Score=39.59 Aligned_cols=42 Identities=17% Similarity=0.141 Sum_probs=27.4
Q ss_pred cCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCC
Q psy13032 59 IKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPI 111 (190)
Q Consensus 59 ~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~ 111 (190)
-.|.++|+||+|+|... ......+.+..-....+++|..|-.
T Consensus 118 gk~KViIIDEAh~LT~e-----------AqNALLKtLEEPP~~vrFILaTTe~ 159 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRS-----------SFNALLKTLEEPPEHVKFLLATTDP 159 (944)
T ss_pred CCcEEEEEechHhcCHH-----------HHHHHHHHHhccCCCeEEEEECCCc
Confidence 36899999999999531 3334455555555666777775543
No 153
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.58 E-value=3.7 Score=36.80 Aligned_cols=16 Identities=31% Similarity=0.551 Sum_probs=13.3
Q ss_pred cCccEEEEcccccccC
Q psy13032 59 IKWQYLILDEAQAIVD 74 (190)
Q Consensus 59 ~~w~~vIvDEaH~lkn 74 (190)
-.+.++|+||+|++..
T Consensus 120 g~~KV~IIDEah~Ls~ 135 (484)
T PRK14956 120 GKYKVYIIDEVHMLTD 135 (484)
T ss_pred CCCEEEEEechhhcCH
Confidence 3678999999999954
No 154
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=73.18 E-value=11 Score=29.72 Aligned_cols=63 Identities=17% Similarity=0.206 Sum_probs=40.2
Q ss_pred HhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCCHHHHHHHHHhh
Q psy13032 55 YFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFI 125 (190)
Q Consensus 55 ~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~~~el~~ll~fl 125 (190)
.+.+-.||+||+||.-..-.... + +-...-..+..-+...-+++||.-.+..+.|+..++.=+
T Consensus 117 ~l~~~~ydlviLDEl~~al~~g~------l--~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADlVTEm 179 (198)
T COG2109 117 ALADGKYDLVILDELNYALRYGL------L--PLEEVVALLKARPEHTHVIITGRGAPPELIELADLVTEM 179 (198)
T ss_pred HHhCCCCCEEEEehhhHHHHcCC------C--CHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHHHhhc
Confidence 44556899999999854433211 0 344445555555667789999977777776666665533
No 155
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=73.01 E-value=6.4 Score=29.90 Aligned_cols=56 Identities=18% Similarity=0.178 Sum_probs=36.1
Q ss_pred HhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCCHHHH
Q psy13032 55 YFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNSMAEL 118 (190)
Q Consensus 55 ~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~~~el 118 (190)
.+..-.+|+||+||.-..-+.. .+ +.......+..-....-++|||--.+..+.|+
T Consensus 90 ~~~~~~~dLlVLDEi~~a~~~g------li--~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~ 145 (159)
T cd00561 90 AIASGEYDLVILDEINYALGYG------LL--DVEEVVDLLKAKPEDLELVLTGRNAPKELIEA 145 (159)
T ss_pred HHhcCCCCEEEEechHhHhhCC------CC--CHHHHHHHHHcCCCCCEEEEECCCCCHHHHHh
Confidence 3445689999999996553321 11 45556666766666778999996554444443
No 156
>KOG0335|consensus
Probab=72.98 E-value=3.9 Score=36.50 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=26.8
Q ss_pred CCCccEEEecHHHHHhcHH--HhhccCccEEEEcccccccC
Q psy13032 36 DASFHVVITSYQLVVSDFK--YFNRIKWQYLILDEAQAIVD 74 (190)
Q Consensus 36 ~~~~dvvitsy~~~~~~~~--~l~~~~w~~vIvDEaH~lkn 74 (190)
...+|++++|.+.+..-.+ .+.--...++|+|||-+|-.
T Consensus 200 ~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD 240 (482)
T KOG0335|consen 200 KRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLD 240 (482)
T ss_pred ccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhh
Confidence 4679999999998765322 11111345999999999864
No 157
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=72.94 E-value=7.7 Score=35.00 Aligned_cols=46 Identities=13% Similarity=0.127 Sum_probs=28.8
Q ss_pred cCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCCH
Q psy13032 59 IKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNSM 115 (190)
Q Consensus 59 ~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~~ 115 (190)
-.|.++|+||+|+|... ......+.+.......+++|..|-.+.-+
T Consensus 118 ~~~kV~iIDE~~~ls~~-----------a~naLLk~LEepp~~~~fIlattd~~kl~ 163 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGH-----------SFNALLKTLEEPPSHVKFILATTDHHKLP 163 (509)
T ss_pred CCcEEEEEEChHhcCHH-----------HHHHHHHHHhccCCCeEEEEEECChHhch
Confidence 36899999999999541 23334455555555566777666444433
No 158
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=72.83 E-value=6.7 Score=34.38 Aligned_cols=65 Identities=14% Similarity=0.179 Sum_probs=31.3
Q ss_pred CeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhc---c-CccEEEEcccccc
Q psy13032 8 FKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNR---I-KWQYLILDEAQAI 72 (190)
Q Consensus 8 l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~---~-~w~~vIvDEaH~l 72 (190)
+.-.+++|.+-.-+...-....+........+.-+..+-.-++.-.+.-.+ . .=-+++|||.||+
T Consensus 48 l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRf 116 (436)
T COG2256 48 LHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIEEARKNRLLGRRTILFLDEIHRF 116 (436)
T ss_pred CceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHHHHHHHHHHhcCCceEEEEehhhhc
Confidence 445677776644333222222222222233344445555555543332211 1 1246779999999
No 159
>KOG1513|consensus
Probab=72.64 E-value=12 Score=35.84 Aligned_cols=87 Identities=9% Similarity=0.151 Sum_probs=46.5
Q ss_pred CCccEEEecHHHHHhcHH-----------Hhhcc---Cc-cEEEEcccccccCcccccccchhhhhhhHHHHHHhcC---
Q psy13032 37 ASFHVVITSYQLVVSDFK-----------YFNRI---KW-QYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGF--- 98 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~~-----------~l~~~---~w-~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l--- 98 (190)
-+-.|+.+||..+..+.. .+.++ .| .+||+||+|+.||.-..-.. ..|+.-+.+..|
T Consensus 367 ~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECHkAKNL~p~~~~-----k~TKtG~tVLdLQk~ 441 (1300)
T KOG1513|consen 367 TKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECHKAKNLVPTAGA-----KSTKTGKTVLDLQKK 441 (1300)
T ss_pred ccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhhhhcccccccCC-----CcCcccHhHHHHHHh
Confidence 345699999998876432 22221 23 37889999999995432221 233333333333
Q ss_pred -CcCcEEEEecCCCCCCHHHHHHHHHhhCCCCCCC
Q psy13032 99 -SCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDS 132 (190)
Q Consensus 99 -~~~~r~lLTgTP~~n~~~el~~ll~fl~p~~~~~ 132 (190)
.--+.+-.|+|-... + .+|...++-+++|.
T Consensus 442 LP~ARVVYASATGAsE-P---rNMaYM~RLGlWGe 472 (1300)
T KOG1513|consen 442 LPNARVVYASATGASE-P---RNMAYMVRLGLWGE 472 (1300)
T ss_pred CCCceEEEeeccCCCC-c---chhhhhhhhccccC
Confidence 333455566665432 2 23333344555543
No 160
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=72.22 E-value=14 Score=30.44 Aligned_cols=36 Identities=17% Similarity=0.251 Sum_probs=22.9
Q ss_pred CccEEEecHHHHHhcH---------HHhhccCccEEEEccccccc
Q psy13032 38 SFHVVITSYQLVVSDF---------KYFNRIKWQYLILDEAQAIV 73 (190)
Q Consensus 38 ~~dvvitsy~~~~~~~---------~~l~~~~w~~vIvDEaH~lk 73 (190)
.+||+-+|-..+..+. .......++++||||+-.+-
T Consensus 166 ~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 166 AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 3678888766665431 11124578999999987554
No 161
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=72.12 E-value=4.6 Score=36.71 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=27.3
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCC
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTP 110 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP 110 (190)
.+.++|+||||++... ......+.+.......+++|++|-
T Consensus 117 ~~KVvIIDEad~Lt~~-----------A~NALLK~LEEpp~~t~FIL~ttd 156 (535)
T PRK08451 117 RFKIFIIDEVHMLTKE-----------AFNALLKTLEEPPSYVKFILATTD 156 (535)
T ss_pred CeEEEEEECcccCCHH-----------HHHHHHHHHhhcCCceEEEEEECC
Confidence 5789999999999541 334455556555556677777754
No 162
>KOG0950|consensus
Probab=71.25 E-value=13 Score=35.95 Aligned_cols=83 Identities=19% Similarity=0.145 Sum_probs=50.6
Q ss_pred CCccEEEecHHHHHhcHHHhhcc----CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcC----C--cCcEEEE
Q psy13032 37 ASFHVVITSYQLVVSDFKYFNRI----KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGF----S--CRNRLLL 106 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~~~l~~~----~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l----~--~~~r~lL 106 (190)
.+-+|.|+|.|........+.+. .-.+|||||-|.+..... ..-.-..+.++ . .-..++|
T Consensus 314 k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~r----------g~~lE~~l~k~~y~~~~~~~~iIGM 383 (1008)
T KOG0950|consen 314 KRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGR----------GAILELLLAKILYENLETSVQIIGM 383 (1008)
T ss_pred cceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeecccc----------chHHHHHHHHHHHhccccceeEeee
Confidence 45679999999888777665432 356999999999976321 11111122222 1 1236999
Q ss_pred ecCCCCCCHHHHHHHHHhhCCCCC
Q psy13032 107 SGTPIQNSMAELWALLHFIMPSMF 130 (190)
Q Consensus 107 TgTP~~n~~~el~~ll~fl~p~~~ 130 (190)
|+|-..|.+-+-|.- .++.+..|
T Consensus 384 SATi~N~~lL~~~L~-A~~y~t~f 406 (1008)
T KOG0950|consen 384 SATIPNNSLLQDWLD-AFVYTTRF 406 (1008)
T ss_pred ecccCChHHHHHHhh-hhheeccc
Confidence 999877765554332 44544433
No 163
>PRK04132 replication factor C small subunit; Provisional
Probab=71.05 E-value=6 Score=37.95 Aligned_cols=50 Identities=22% Similarity=0.279 Sum_probs=33.1
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCCHHHHHH
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWA 120 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~~~el~~ 120 (190)
.+.+||+||||+|-.. .+....+.+.......+++|+.++...=+.-+.+
T Consensus 630 ~~KVvIIDEaD~Lt~~-----------AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrS 679 (846)
T PRK04132 630 SFKIIFLDEADALTQD-----------AQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS 679 (846)
T ss_pred CCEEEEEECcccCCHH-----------HHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhh
Confidence 4789999999999531 3444555555555677888888776544443333
No 164
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=70.87 E-value=5.1 Score=32.22 Aligned_cols=39 Identities=28% Similarity=0.428 Sum_probs=23.1
Q ss_pred ccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCc----CcEEEEecCCC
Q psy13032 61 WQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSC----RNRLLLSGTPI 111 (190)
Q Consensus 61 w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~----~~r~lLTgTP~ 111 (190)
-.++|+||+|.+.. ..-...+.+..... ...+++||+|-
T Consensus 124 ~~vliiDe~~~l~~------------~~~~~l~~l~~~~~~~~~~~~vvl~g~~~ 166 (269)
T TIGR03015 124 RALLVVDEAQNLTP------------ELLEELRMLSNFQTDNAKLLQIFLVGQPE 166 (269)
T ss_pred CeEEEEECcccCCH------------HHHHHHHHHhCcccCCCCeEEEEEcCCHH
Confidence 35889999999854 32222333333322 22468999883
No 165
>KOG0326|consensus
Probab=70.74 E-value=5.9 Score=33.86 Aligned_cols=85 Identities=22% Similarity=0.212 Sum_probs=54.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHh-h-ccCccEEEEcccccccCcccccccchh
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYF-N-RIKWQYLILDEAQAIVDINVYSYLNDI 84 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l-~-~~~w~~vIvDEaH~lkn~~~~~~~~~~ 84 (190)
+++|.+-.|...-|..+... ....+++|.|.+.+....+.= . --+..++|+|||.++-+..
T Consensus 181 ~i~vmvttGGT~lrDDI~Rl---------~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~-------- 243 (459)
T KOG0326|consen 181 GIKVMVTTGGTSLRDDIMRL---------NQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVD-------- 243 (459)
T ss_pred CeEEEEecCCcccccceeee---------cCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchh--------
Confidence 57788888887777766542 356889999988765432211 0 1246789999999997732
Q ss_pred hhhhhHHHHHHhcC-CcCcEEEEecCC
Q psy13032 85 EREQSMRWKLLLGF-SCRNRLLLSGTP 110 (190)
Q Consensus 85 ~~~~s~~~~~~~~l-~~~~r~lLTgTP 110 (190)
-....-+.+.-+ +.+..++.|+|-
T Consensus 244 --F~~~~e~li~~lP~~rQillySATF 268 (459)
T KOG0326|consen 244 --FQPIVEKLISFLPKERQILLYSATF 268 (459)
T ss_pred --hhhHHHHHHHhCCccceeeEEeccc
Confidence 333344455555 445567778874
No 166
>KOG0329|consensus
Probab=70.58 E-value=6.3 Score=32.66 Aligned_cols=63 Identities=19% Similarity=0.376 Sum_probs=41.5
Q ss_pred CCccCCCCeEEEEeCCHHHHH--HHHHHhhhhcccCCCCCccEEEecHHHHHhcHH--HhhccCccEEEEcccccccC
Q psy13032 1 MERFVPDFKVVPYWGSPQERK--ILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK--YFNRIKWQYLILDEAQAIVD 74 (190)
Q Consensus 1 i~k~~p~l~v~~~~G~~~~r~--~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~--~l~~~~w~~vIvDEaH~lkn 74 (190)
|.|+.|+.+|.++.|.-.-++ .... .-++||+.|.+.+..... .+.--.-.-.|+||+.++-.
T Consensus 133 fskymP~vkvaVFfGG~~Ikkdee~lk-----------~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle 199 (387)
T KOG0329|consen 133 FSKYMPSVKVSVFFGGLFIKKDEELLK-----------NCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLE 199 (387)
T ss_pred HHhhCCCceEEEEEcceeccccHHHHh-----------CCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHH
Confidence 357889999999988653322 1221 257999999988765322 22222456789999987753
No 167
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=69.93 E-value=5.8 Score=34.00 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=24.9
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecC
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGT 109 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgT 109 (190)
.+.++|+||+|++... ......+.+.......++++++|
T Consensus 119 ~~kviIIDEa~~l~~~-----------a~naLLk~lEe~~~~~~fIl~t~ 157 (363)
T PRK14961 119 RFKVYLIDEVHMLSRH-----------SFNALLKTLEEPPQHIKFILATT 157 (363)
T ss_pred CceEEEEEChhhcCHH-----------HHHHHHHHHhcCCCCeEEEEEcC
Confidence 4679999999999541 12234445555445556777664
No 168
>KOG0328|consensus
Probab=69.92 E-value=12 Score=31.61 Aligned_cols=78 Identities=18% Similarity=0.189 Sum_probs=54.5
Q ss_pred CccEEEecHHHHHhcH--HHhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCC-cCcEEEEecCCCCCC
Q psy13032 38 SFHVVITSYQLVVSDF--KYFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFS-CRNRLLLSGTPIQNS 114 (190)
Q Consensus 38 ~~dvvitsy~~~~~~~--~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~-~~~r~lLTgTP~~n~ 114 (190)
..+||.-|.+.+-... ..|+-....++|+|||.-+-| ++-+.+++...+-++ .-..+++|+|--
T Consensus 145 G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~----------kgfk~Qiydiyr~lp~~~Qvv~~SATlp--- 211 (400)
T KOG0328|consen 145 GQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLN----------KGFKEQIYDIYRYLPPGAQVVLVSATLP--- 211 (400)
T ss_pred cceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHH----------hhHHHHHHHHHHhCCCCceEEEEeccCc---
Confidence 3567776666554322 245556788999999999887 347888999888886 556788999863
Q ss_pred HHHHHHHHHhhCCCC
Q psy13032 115 MAELWALLHFIMPSM 129 (190)
Q Consensus 115 ~~el~~ll~fl~p~~ 129 (190)
.|..-+..+..+++
T Consensus 212 -~eilemt~kfmtdp 225 (400)
T KOG0328|consen 212 -HEILEMTEKFMTDP 225 (400)
T ss_pred -HHHHHHHHHhcCCc
Confidence 45555666666655
No 169
>KOG0353|consensus
Probab=69.82 E-value=19 Score=31.61 Aligned_cols=84 Identities=15% Similarity=0.250 Sum_probs=58.0
Q ss_pred cccCCCCCccEEEecHHHHHhcHHHhhc-------cCccEEEEcccccccCcccccccchhhhhhhHHHHHHh----cCC
Q psy13032 31 NLHTKDASFHVVITSYQLVVSDFKYFNR-------IKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLL----GFS 99 (190)
Q Consensus 31 ~~~~~~~~~dvvitsy~~~~~~~~~l~~-------~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~----~l~ 99 (190)
.+..+...+..+-.|.+.+.+...++.. --+.+|-+||.|...-|.. .-..-|+++. +++
T Consensus 179 ~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwgh---------dfr~dy~~l~ilkrqf~ 249 (695)
T KOG0353|consen 179 AITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGH---------DFRPDYKALGILKRQFK 249 (695)
T ss_pred HHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCc---------ccCcchHHHHHHHHhCC
Confidence 3445668889999999998876554433 3478899999997754321 2222334433 345
Q ss_pred cCcEEEEecCCCCCCHHHHHHHHH
Q psy13032 100 CRNRLLLSGTPIQNSMAELWALLH 123 (190)
Q Consensus 100 ~~~r~lLTgTP~~n~~~el~~ll~ 123 (190)
..-.++||+|...+-++|.-.++-
T Consensus 250 ~~~iigltatatn~vl~d~k~il~ 273 (695)
T KOG0353|consen 250 GAPIIGLTATATNHVLDDAKDILC 273 (695)
T ss_pred CCceeeeehhhhcchhhHHHHHHh
Confidence 666899999999999998777665
No 170
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=68.65 E-value=10 Score=35.51 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=27.8
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCC
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQ 112 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~ 112 (190)
.+.++|+||+|+|... ......+.+.......+++|+.|-..
T Consensus 118 k~KV~IIDEVh~LS~~-----------A~NALLKtLEEPP~~v~FILaTtd~~ 159 (702)
T PRK14960 118 RFKVYLIDEVHMLSTH-----------SFNALLKTLEEPPEHVKFLFATTDPQ 159 (702)
T ss_pred CcEEEEEechHhcCHH-----------HHHHHHHHHhcCCCCcEEEEEECChH
Confidence 6889999999999531 33345555555555567788776433
No 171
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=68.48 E-value=6.6 Score=36.08 Aligned_cols=41 Identities=15% Similarity=0.187 Sum_probs=25.5
Q ss_pred cCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCC
Q psy13032 59 IKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTP 110 (190)
Q Consensus 59 ~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP 110 (190)
-.+.++|+||+|+|... ......+.+.......+++|..|-
T Consensus 117 ~~~KVvIIDEah~Lt~~-----------A~NALLK~LEEpp~~~~fIL~tte 157 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTA-----------GFNALLKIVEEPPEHLIFIFATTE 157 (584)
T ss_pred CCceEEEEECCCcCCHH-----------HHHHHHHHHhcCCCCeEEEEEeCC
Confidence 46789999999999651 233344555554555555554443
No 172
>KOG0925|consensus
Probab=68.10 E-value=4.1 Score=36.69 Aligned_cols=54 Identities=17% Similarity=0.197 Sum_probs=31.7
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcC---CcC-cEEEEecCCCCCCHHHHHHHHHhh
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGF---SCR-NRLLLSGTPIQNSMAELWALLHFI 125 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l---~~~-~r~lLTgTP~~n~~~el~~ll~fl 125 (190)
.|.++|+||||-=.= ..-.....++.+ +.. ..+++|+|-...++..+|+-.-++
T Consensus 159 ~y~viiLDeahERtl------------ATDiLmGllk~v~~~rpdLk~vvmSatl~a~Kfq~yf~n~Pll 216 (699)
T KOG0925|consen 159 RYGVIILDEAHERTL------------ATDILMGLLKEVVRNRPDLKLVVMSATLDAEKFQRYFGNAPLL 216 (699)
T ss_pred cccEEEechhhhhhH------------HHHHHHHHHHHHHhhCCCceEEEeecccchHHHHHHhCCCCee
Confidence 699999999994211 111122222222 233 357899998888887776643333
No 173
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=67.44 E-value=5.9 Score=37.92 Aligned_cols=40 Identities=15% Similarity=0.232 Sum_probs=26.2
Q ss_pred cCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecC
Q psy13032 59 IKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGT 109 (190)
Q Consensus 59 ~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgT 109 (190)
-.+.++||||+|+|... ....+.+.+.......+++|+.|
T Consensus 119 ~~~KV~IIDEad~lt~~-----------a~NaLLK~LEEpP~~~~fIl~tt 158 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQ-----------GFNALLKIVEEPPEHLKFIFATT 158 (824)
T ss_pred CCceEEEEechhhcCHH-----------HHHHHHHHHhCCCCCeEEEEEeC
Confidence 47899999999999541 33345555655555556666543
No 174
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=67.28 E-value=8.5 Score=29.63 Aligned_cols=58 Identities=21% Similarity=0.238 Sum_probs=30.7
Q ss_pred hccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCCHHHHHHHHHhh
Q psy13032 57 NRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFI 125 (190)
Q Consensus 57 ~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~~~el~~ll~fl 125 (190)
..-.||+||+||.-..-+.. -+ +.......+..-+...-++|||-- -+.+|..+-+++
T Consensus 93 ~~~~~dlvILDEi~~a~~~g------ll--~~~~v~~~l~~rp~~~evVlTGR~---~~~~l~e~ADlV 150 (172)
T PF02572_consen 93 SSGEYDLVILDEINYAVDYG------LL--SEEEVLDLLENRPESLEVVLTGRN---APEELIEAADLV 150 (172)
T ss_dssp T-TT-SEEEEETHHHHHHTT------SS---HHHHHHHHHTS-TT-EEEEE-SS-----HHHHHH-SEE
T ss_pred hCCCCCEEEEcchHHHhHCC------Cc--cHHHHHHHHHcCCCCeEEEEECCC---CCHHHHHhCCee
Confidence 34579999999985443311 11 555666667666677789999954 455555444433
No 175
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.24 E-value=5.7 Score=36.76 Aligned_cols=15 Identities=13% Similarity=0.620 Sum_probs=13.1
Q ss_pred CccEEEEcccccccC
Q psy13032 60 KWQYLILDEAQAIVD 74 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn 74 (190)
.|+++|+||+|+|..
T Consensus 124 ~~KV~IIDEvh~Ls~ 138 (618)
T PRK14951 124 RFKVFMIDEVHMLTN 138 (618)
T ss_pred CceEEEEEChhhCCH
Confidence 589999999999954
No 176
>KOG0342|consensus
Probab=67.16 E-value=21 Score=32.08 Aligned_cols=72 Identities=19% Similarity=0.242 Sum_probs=42.4
Q ss_pred CccEEEecHHHHHhcHHHh---hccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcC-CcCcEEEEecCCCCC
Q psy13032 38 SFHVVITSYQLVVSDFKYF---NRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGF-SCRNRLLLSGTPIQN 113 (190)
Q Consensus 38 ~~dvvitsy~~~~~~~~~l---~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l-~~~~r~lLTgTP~~n 113 (190)
.++++|.|.+.+.-+.+-- .-..-+++|+|||.++-.-. =.-..-+.+..+ +.+.-++.|+|- ..
T Consensus 205 ~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~G----------F~~di~~Ii~~lpk~rqt~LFSAT~-~~ 273 (543)
T KOG0342|consen 205 GCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIG----------FEEDVEQIIKILPKQRQTLLFSATQ-PS 273 (543)
T ss_pred cccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcc----------cHHHHHHHHHhccccceeeEeeCCC-cH
Confidence 6889999999876544311 11123789999999986521 111222333334 334568888885 34
Q ss_pred CHHHHHH
Q psy13032 114 SMAELWA 120 (190)
Q Consensus 114 ~~~el~~ 120 (190)
.+.++..
T Consensus 274 kV~~l~~ 280 (543)
T KOG0342|consen 274 KVKDLAR 280 (543)
T ss_pred HHHHHHH
Confidence 5666543
No 177
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=66.51 E-value=15 Score=36.17 Aligned_cols=75 Identities=19% Similarity=0.164 Sum_probs=47.8
Q ss_pred CCccEEEecHHHHHhcHHHh---------hccCccEEEEcccccccCcccccccchhhhhhhHHHHHHh--cCCcCcEEE
Q psy13032 37 ASFHVVITSYQLVVSDFKYF---------NRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLL--GFSCRNRLL 105 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~~~l---------~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~--~l~~~~r~l 105 (190)
-...|+|+|.+.+......+ ..+.=..||+||.|-.-.. ....+.+.+. ..-....++
T Consensus 561 l~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~-----------~~~~L~rlL~w~~~lG~~VlL 629 (1110)
T TIGR02562 561 LAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPE-----------DLPALLRLVQLAGLLGSRVLL 629 (1110)
T ss_pred hcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHH-----------HHHHHHHHHHHHHHcCCCEEE
Confidence 34689999999887654322 2334468999999987541 2233333333 234567899
Q ss_pred EecCCCCCCHHHHHHHH
Q psy13032 106 LSGTPIQNSMAELWALL 122 (190)
Q Consensus 106 LTgTP~~n~~~el~~ll 122 (190)
||+|--..-...|+...
T Consensus 630 mSATLP~~l~~~L~~Ay 646 (1110)
T TIGR02562 630 SSATLPPALVKTLFRAY 646 (1110)
T ss_pred EeCCCCHHHHHHHHHHH
Confidence 99998776655555443
No 178
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=65.61 E-value=31 Score=32.30 Aligned_cols=16 Identities=25% Similarity=0.461 Sum_probs=12.4
Q ss_pred ccCccEEEEccccccc
Q psy13032 58 RIKWQYLILDEAQAIV 73 (190)
Q Consensus 58 ~~~w~~vIvDEaH~lk 73 (190)
+.+++++||||+-.+-
T Consensus 240 ~r~~~~aIvDEvDSiL 255 (656)
T PRK12898 240 LRGLHFAIVDEADSVL 255 (656)
T ss_pred ccccceeEeeccccee
Confidence 4568899999997664
No 179
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=63.96 E-value=15 Score=35.15 Aligned_cols=92 Identities=10% Similarity=0.053 Sum_probs=54.6
Q ss_pred CccEEEecHHHHHhcHHHhhc----cCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcC-CcCcEEEEecCCCC
Q psy13032 38 SFHVVITSYQLVVSDFKYFNR----IKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGF-SCRNRLLLSGTPIQ 112 (190)
Q Consensus 38 ~~dvvitsy~~~~~~~~~l~~----~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l-~~~~r~lLTgTP~~ 112 (190)
...|++.|-..+..|. +.. -....+|+||||++.... ..+-+.+.-+.- +.....++|+.|-.
T Consensus 7 ~ggi~~~T~rIl~~Dl--L~~ri~~~~itgiiv~~Ahr~~~~~----------~eaFI~rlyr~~n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 7 EGGIFSITSRILVVDL--LTGIIPPELITGILVLRADRIIESS----------QEAFILRLYRQKNKTGFIKAFSDNPEA 74 (814)
T ss_pred cCCEEEEechhhHhHH--hcCCCCHHHccEEEEeecccccccc----------cHHHHHHHHHHhCCCcceEEecCCCcc
Confidence 3457777777776653 322 246789999999997622 333333333333 34568999999987
Q ss_pred C--CHHHHHHHHHhhCCCCCCChHHHHHHHh
Q psy13032 113 N--SMAELWALLHFIMPSMFDSHDEFNEWFS 141 (190)
Q Consensus 113 n--~~~el~~ll~fl~p~~~~~~~~F~~~~~ 141 (190)
. +...+-..++-|.-....-+..|.....
T Consensus 75 ~~~g~~~l~~vmk~L~i~~v~l~prf~~~V~ 105 (814)
T TIGR00596 75 FTMGFSPLETKMRNLFLRHVYLWPRFHVEVA 105 (814)
T ss_pred cccchHHHHHHHHHhCcCeEEEeCCCchHHH
Confidence 4 4455555666665554433444544443
No 180
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=63.49 E-value=12 Score=30.42 Aligned_cols=54 Identities=15% Similarity=0.002 Sum_probs=26.6
Q ss_pred hhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCC
Q psy13032 56 FNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQ 112 (190)
Q Consensus 56 l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~ 112 (190)
+....-.++++||+|.+...... ...+.......+.+........++++|+|-.
T Consensus 101 ~~~a~~~VL~IDE~~~L~~~~~~---~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~ 154 (261)
T TIGR02881 101 IKKALGGVLFIDEAYSLARGGEK---DFGKEAIDTLVKGMEDNRNEFVLILAGYSDE 154 (261)
T ss_pred HHhccCCEEEEechhhhccCCcc---chHHHHHHHHHHHHhccCCCEEEEecCCcch
Confidence 33334468999999998541100 0000011112222223334457888888744
No 181
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=63.18 E-value=9.4 Score=34.60 Aligned_cols=40 Identities=18% Similarity=0.216 Sum_probs=25.7
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCC
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTP 110 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP 110 (190)
.+.++|+||+|++... ......+.+........++|..|=
T Consensus 119 ~~kVvIIDEad~ls~~-----------a~naLLK~LEepp~~~~fIL~t~d 158 (527)
T PRK14969 119 RFKVYIIDEVHMLSKS-----------AFNAMLKTLEEPPEHVKFILATTD 158 (527)
T ss_pred CceEEEEcCcccCCHH-----------HHHHHHHHHhCCCCCEEEEEEeCC
Confidence 5789999999999541 233455555555455566665553
No 182
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=62.69 E-value=9.4 Score=29.11 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=28.7
Q ss_pred HHHHHhcHHHhhc----cCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEec
Q psy13032 46 YQLVVSDFKYFNR----IKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSG 108 (190)
Q Consensus 46 y~~~~~~~~~l~~----~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTg 108 (190)
.+.++.-.+.+.. -.+.+||+||+|++... ......+.+........++++.
T Consensus 78 ~~~i~~i~~~~~~~~~~~~~kviiide~~~l~~~-----------~~~~Ll~~le~~~~~~~~il~~ 133 (188)
T TIGR00678 78 VDQVRELVEFLSRTPQESGRRVVIIEDAERMNEA-----------AANALLKTLEEPPPNTLFILIT 133 (188)
T ss_pred HHHHHHHHHHHccCcccCCeEEEEEechhhhCHH-----------HHHHHHHHhcCCCCCeEEEEEE
Confidence 4555443333322 35789999999999541 2333444444444445555554
No 183
>PRK08084 DNA replication initiation factor; Provisional
Probab=62.19 E-value=48 Score=26.43 Aligned_cols=89 Identities=13% Similarity=0.089 Sum_probs=44.0
Q ss_pred eEEEEeCC-HHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHH-hhc-cCccEEEEcccccccCcccccccchhh
Q psy13032 9 KVVPYWGS-PQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY-FNR-IKWQYLILDEAQAIVDINVYSYLNDIE 85 (190)
Q Consensus 9 ~v~~~~G~-~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~-l~~-~~w~~vIvDEaH~lkn~~~~~~~~~~~ 85 (190)
..++.+|. ...+..+.+-+.+... . ....++.++.+........ +.. ...+++|+||.|.+.....
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-~~~~v~y~~~~~~~~~~~~~~~~~~~~dlliiDdi~~~~~~~~-------- 114 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELS--Q-RGRAVGYVPLDKRAWFVPEVLEGMEQLSLVCIDNIECIAGDEL-------- 114 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH--h-CCCeEEEEEHHHHhhhhHHHHHHhhhCCEEEEeChhhhcCCHH--------
Confidence 34455554 4444445543322211 1 1345777776654332111 111 1248999999999864110
Q ss_pred hhhhHHHHHHhcCC-c-CcEEEEecC
Q psy13032 86 REQSMRWKLLLGFS-C-RNRLLLSGT 109 (190)
Q Consensus 86 ~~~s~~~~~~~~l~-~-~~r~lLTgT 109 (190)
.....+..+..+. . +..+++||+
T Consensus 115 -~~~~lf~l~n~~~e~g~~~li~ts~ 139 (235)
T PRK08084 115 -WEMAIFDLYNRILESGRTRLLITGD 139 (235)
T ss_pred -HHHHHHHHHHHHHHcCCCeEEEeCC
Confidence 2233444444442 2 347888887
No 184
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=62.12 E-value=10 Score=36.68 Aligned_cols=55 Identities=9% Similarity=0.078 Sum_probs=36.9
Q ss_pred CCeEEEEeCCH--HHHHHHHHHhhhhcccCCCCCccEEEecHHHH-----Hhc----HHHhhccCccEEEEcccccccC
Q psy13032 7 DFKVVPYWGSP--QERKILRQFWDMKNLHTKDASFHVVITSYQLV-----VSD----FKYFNRIKWQYLILDEAQAIVD 74 (190)
Q Consensus 7 ~l~v~~~~G~~--~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~-----~~~----~~~l~~~~w~~vIvDEaH~lkn 74 (190)
+++|.+..|+. .+|+... .+||++.|...+ +.+ .+...+....++||||+|.+-=
T Consensus 151 Gl~v~~i~~~~~~~err~~Y-------------~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLI 216 (913)
T PRK13103 151 GLSVGIVTPFQPPEEKRAAY-------------AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILI 216 (913)
T ss_pred CCEEEEECCCCCHHHHHHHh-------------cCCEEEEcccccccchhhccceechhhhcccccceeEechhhheec
Confidence 68888887753 4444332 389999887775 322 1223456789999999998854
No 185
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=61.92 E-value=62 Score=28.03 Aligned_cols=40 Identities=15% Similarity=0.138 Sum_probs=25.1
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCC
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTP 110 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP 110 (190)
.+.+||+||+|++... ......+.+........+++++|-
T Consensus 127 ~~kvvIIdea~~l~~~-----------~~~~LLk~LEep~~~t~~Il~t~~ 166 (397)
T PRK14955 127 RYRVYIIDEVHMLSIA-----------AFNAFLKTLEEPPPHAIFIFATTE 166 (397)
T ss_pred CeEEEEEeChhhCCHH-----------HHHHHHHHHhcCCCCeEEEEEeCC
Confidence 5789999999999541 223344455544455566666653
No 186
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=61.18 E-value=19 Score=29.77 Aligned_cols=43 Identities=12% Similarity=0.147 Sum_probs=27.4
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCC
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQ 112 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~ 112 (190)
..++||+||+|++.... ........+.......++++|++...
T Consensus 100 ~~~vliiDe~d~l~~~~----------~~~~L~~~le~~~~~~~~Ilt~n~~~ 142 (316)
T PHA02544 100 GGKVIIIDEFDRLGLAD----------AQRHLRSFMEAYSKNCSFIITANNKN 142 (316)
T ss_pred CCeEEEEECcccccCHH----------HHHHHHHHHHhcCCCceEEEEcCChh
Confidence 46899999999983311 22333344555566678888886544
No 187
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=60.71 E-value=11 Score=34.52 Aligned_cols=40 Identities=20% Similarity=0.179 Sum_probs=24.0
Q ss_pred cCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecC
Q psy13032 59 IKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGT 109 (190)
Q Consensus 59 ~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgT 109 (190)
-.+.++|+||+|+|... ......+.+........++++.|
T Consensus 118 ~~~kViIIDE~~~Lt~~-----------a~naLLKtLEepp~~~ifIlatt 157 (559)
T PRK05563 118 AKYKVYIIDEVHMLSTG-----------AFNALLKTLEEPPAHVIFILATT 157 (559)
T ss_pred CCeEEEEEECcccCCHH-----------HHHHHHHHhcCCCCCeEEEEEeC
Confidence 35889999999999541 22334444444444445666544
No 188
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=60.67 E-value=57 Score=25.76 Aligned_cols=90 Identities=20% Similarity=0.221 Sum_probs=48.4
Q ss_pred eEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcH-HH--------h-hc-cCccEEEEcccccccCccc
Q psy13032 9 KVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDF-KY--------F-NR-IKWQYLILDEAQAIVDINV 77 (190)
Q Consensus 9 ~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~-~~--------l-~~-~~w~~vIvDEaH~lkn~~~ 77 (190)
.+++|.++...+..+.+-..+.-. .......|+-++-+.+..+. +. + .. ...|++|+|..|.+.+...
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~-~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~~~ 114 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQ-KQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAGKQR 114 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH-HHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTTHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHH-hccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcCchH
Confidence 356777676666666654322211 11234456666655554322 11 1 11 3689999999999987210
Q ss_pred ccccchhhhhhhHHHHHHhcC-CcCcEEEEec
Q psy13032 78 YSYLNDIEREQSMRWKLLLGF-SCRNRLLLSG 108 (190)
Q Consensus 78 ~~~~~~~~~~~s~~~~~~~~l-~~~~r~lLTg 108 (190)
.+...+..+..+ .....+++|+
T Consensus 115 ---------~q~~lf~l~n~~~~~~k~li~ts 137 (219)
T PF00308_consen 115 ---------TQEELFHLFNRLIESGKQLILTS 137 (219)
T ss_dssp ---------HHHHHHHHHHHHHHTTSEEEEEE
T ss_pred ---------HHHHHHHHHHHHHhhCCeEEEEe
Confidence 234455555555 3445677666
No 189
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=60.47 E-value=12 Score=29.29 Aligned_cols=42 Identities=31% Similarity=0.428 Sum_probs=28.2
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCCHH
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNSMA 116 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~~~ 116 (190)
..+.+|+||++.+-. ....- +..+.....+.+.|=|.|-...
T Consensus 62 ~~~~liiDE~~~~~~--------------g~l~~-l~~~~~~~~~~l~GDp~Q~~~~ 103 (234)
T PF01443_consen 62 SYDTLIIDEAQLLPP--------------GYLLL-LLSLSPAKNVILFGDPLQIPYI 103 (234)
T ss_pred cCCEEEEeccccCCh--------------HHHHH-HHhhccCcceEEEECchhccCC
Confidence 489999999999843 33333 3334344467777999996554
No 190
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=59.95 E-value=16 Score=32.16 Aligned_cols=59 Identities=14% Similarity=0.362 Sum_probs=34.5
Q ss_pred cHHHHHhcHHHhhccCcc--EEEEcccccccCcccccccchhhhhhhHHHHHHhcC-------CcC-cEEEEecCC
Q psy13032 45 SYQLVVSDFKYFNRIKWQ--YLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGF-------SCR-NRLLLSGTP 110 (190)
Q Consensus 45 sy~~~~~~~~~l~~~~w~--~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l-------~~~-~r~lLTgTP 110 (190)
.|+.++.-..++....+. +|++||+=.+-...... ...+.+..+..+ +.+ --+++||||
T Consensus 222 ~~~~Lk~L~~~lr~aGy~GLlI~lDE~e~l~kl~~~~-------~R~~~ye~lr~lidd~~~G~~~gL~~~~~gTP 290 (416)
T PF10923_consen 222 AYDFLKGLARFLRDAGYKGLLILLDELENLYKLRNDQ-------AREKNYEALRQLIDDIDQGRAPGLYFVFAGTP 290 (416)
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEechHHHHhcCChH-------HHHHHHHHHHHHHHHHhcCCCCceEEEEeeCH
Confidence 356677777777777775 67799996543211100 123334444443 223 357899999
No 191
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=59.81 E-value=11 Score=34.64 Aligned_cols=40 Identities=15% Similarity=0.197 Sum_probs=26.0
Q ss_pred cCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecC
Q psy13032 59 IKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGT 109 (190)
Q Consensus 59 ~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgT 109 (190)
-.+.++|+||+|++... ......+.+........++|+.|
T Consensus 118 ~~~KVvIIdev~~Lt~~-----------a~naLLk~LEepp~~~~fIl~t~ 157 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTN-----------AFNALLKTLEEPPPHVKFIFATT 157 (576)
T ss_pred CCceEEEEEChhhCCHH-----------HHHHHHHHHHcCCCCeEEEEEeC
Confidence 36789999999999531 33445555555555556666554
No 192
>KOG0949|consensus
Probab=59.80 E-value=29 Score=34.16 Aligned_cols=75 Identities=24% Similarity=0.243 Sum_probs=50.5
Q ss_pred CCCccEEEecHHHHHhcHHH--hhc---cCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCC
Q psy13032 36 DASFHVVITSYQLVVSDFKY--FNR---IKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTP 110 (190)
Q Consensus 36 ~~~~dvvitsy~~~~~~~~~--l~~---~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP 110 (190)
.-.+.|.||--+.+....-. ..+ -+..+||+||.|.+.|. ..+..+..+.-+-..--++|++|
T Consensus 603 p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~-----------ed~l~~Eqll~li~CP~L~LSAT- 670 (1330)
T KOG0949|consen 603 PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNE-----------EDGLLWEQLLLLIPCPFLVLSAT- 670 (1330)
T ss_pred chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhcccc-----------ccchHHHHHHHhcCCCeeEEecc-
Confidence 34788999988887652211 011 14579999999999984 55666666666655556788888
Q ss_pred CCCCHHHHHHHHH
Q psy13032 111 IQNSMAELWALLH 123 (190)
Q Consensus 111 ~~n~~~el~~ll~ 123 (190)
++++..++.-++
T Consensus 671 -igN~~l~qkWln 682 (1330)
T KOG0949|consen 671 -IGNPNLFQKWLN 682 (1330)
T ss_pred -cCCHHHHHHHHH
Confidence 467776665555
No 193
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=59.70 E-value=11 Score=33.95 Aligned_cols=41 Identities=20% Similarity=0.256 Sum_probs=26.2
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCC
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPI 111 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~ 111 (190)
.+.++|+||+|++... ......+.+.......+++++.|-.
T Consensus 116 ~~KVvIIDEah~Ls~~-----------A~NaLLK~LEePp~~v~fIlatte~ 156 (491)
T PRK14964 116 KFKVYIIDEVHMLSNS-----------AFNALLKTLEEPAPHVKFILATTEV 156 (491)
T ss_pred CceEEEEeChHhCCHH-----------HHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 5789999999999541 2334455555545555677766543
No 194
>KOG0922|consensus
Probab=59.68 E-value=8.1 Score=35.79 Aligned_cols=50 Identities=22% Similarity=0.302 Sum_probs=32.3
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcC---CcC-cEEEEecCCCCCCHHHHHHH
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGF---SCR-NRLLLSGTPIQNSMAELWAL 121 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l---~~~-~r~lLTgTP~~n~~~el~~l 121 (190)
.+++||+||||-= +. ..--....++++ +.. ..+++|+|-=...+.++|.-
T Consensus 163 kYsvIIlDEAHER-sl-----------~TDiLlGlLKki~~~R~~LklIimSATlda~kfS~yF~~ 216 (674)
T KOG0922|consen 163 KYSVIILDEAHER-SL-----------HTDILLGLLKKILKKRPDLKLIIMSATLDAEKFSEYFNN 216 (674)
T ss_pred cccEEEEechhhh-hh-----------HHHHHHHHHHHHHhcCCCceEEEEeeeecHHHHHHHhcC
Confidence 5899999999941 10 222334444444 233 56889999877777777765
No 195
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=59.34 E-value=14 Score=25.58 Aligned_cols=43 Identities=16% Similarity=0.082 Sum_probs=27.7
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCC------cCcEEEEecCCCCC
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFS------CRNRLLLSGTPIQN 113 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~------~~~r~lLTgTP~~n 113 (190)
...++|+||++++... ........+..+. ....+++|+++...
T Consensus 84 ~~~~lilDe~~~~~~~-----------~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~ 132 (151)
T cd00009 84 KPGVLFIDEIDSLSRG-----------AQNALLRVLETLNDLRIDRENVRVIGATNRPLL 132 (151)
T ss_pred CCeEEEEeChhhhhHH-----------HHHHHHHHHHhcCceeccCCCeEEEEecCcccc
Confidence 5689999999988331 3334444455542 45678888877654
No 196
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=59.08 E-value=27 Score=32.89 Aligned_cols=50 Identities=16% Similarity=0.168 Sum_probs=30.8
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCCHHHHHH
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWA 120 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~~~el~~ 120 (190)
.+.++||||+|++... ......+.+.......+++|+.|-...-+.-+.+
T Consensus 119 k~KVIIIDEad~Ls~~-----------A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrS 168 (709)
T PRK08691 119 KYKVYIIDEVHMLSKS-----------AFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLS 168 (709)
T ss_pred CcEEEEEECccccCHH-----------HHHHHHHHHHhCCCCcEEEEEeCCccccchHHHH
Confidence 5789999999998531 2233455555545556777777655544444333
No 197
>PHA02533 17 large terminase protein; Provisional
Probab=58.25 E-value=20 Score=32.56 Aligned_cols=19 Identities=16% Similarity=0.273 Sum_probs=15.3
Q ss_pred hhccCccEEEEcccccccC
Q psy13032 56 FNRIKWQYLILDEAQAIVD 74 (190)
Q Consensus 56 l~~~~w~~vIvDEaH~lkn 74 (190)
......+++|+||+|.+++
T Consensus 165 ~rG~~~~~liiDE~a~~~~ 183 (534)
T PHA02533 165 VRGNSFAMIYIDECAFIPN 183 (534)
T ss_pred cCCCCCceEEEeccccCCC
Confidence 4455678999999999876
No 198
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=57.97 E-value=5.3 Score=37.65 Aligned_cols=54 Identities=22% Similarity=0.101 Sum_probs=32.2
Q ss_pred hccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcC--CcCcEEEEecCCCCCCHHHHHH
Q psy13032 57 NRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGF--SCRNRLLLSGTPIQNSMAELWA 120 (190)
Q Consensus 57 ~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l--~~~~r~lLTgTP~~n~~~el~~ 120 (190)
..+.-..+|+||+|.+-... ..+.....+..+ .....+++|||+-+-=-..|-.
T Consensus 335 ~~l~~S~vIlDE~h~~~~~~----------~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~ 390 (733)
T COG1203 335 ALLLTSLVILDEVHLYADET----------MLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKK 390 (733)
T ss_pred HHHHhhchhhccHHhhcccc----------hHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHH
Confidence 33556789999999986510 122223333333 3567899999996544444433
No 199
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=57.78 E-value=55 Score=30.32 Aligned_cols=83 Identities=12% Similarity=0.241 Sum_probs=48.8
Q ss_pred CCCCeEEEEeCC--HHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEcccccccCcccccccc
Q psy13032 5 VPDFKVVPYWGS--PQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYSYLN 82 (190)
Q Consensus 5 ~p~l~v~~~~G~--~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~ 82 (190)
.|+.+|..+||. ..+|..+.+.| +.++.+|+|+| +.+..-.+. . .-++||+..+.+.
T Consensus 480 ~~~~~v~~lHG~m~~~eR~~i~~~F-------~~g~~~ILVaT-~vie~GvDi-P--~v~~VIi~~~~r~---------- 538 (630)
T TIGR00643 480 FPKYNVGLLHGRMKSDEKEAVMEEF-------REGEVDILVAT-TVIEVGVDV-P--NATVMVIEDAERF---------- 538 (630)
T ss_pred CCCCcEEEEeCCCCHHHHHHHHHHH-------HcCCCCEEEEC-ceeecCccc-C--CCcEEEEeCCCcC----------
Confidence 378899999994 56666666544 23568999998 333332221 1 2356777777664
Q ss_pred hhhhhhhHHHHHHhcC----CcCcEEEEecCCCC
Q psy13032 83 DIEREQSMRWKLLLGF----SCRNRLLLSGTPIQ 112 (190)
Q Consensus 83 ~~~~~~s~~~~~~~~l----~~~~r~lLTgTP~~ 112 (190)
..+...+..-+. ...+.++++.+|..
T Consensus 539 ----gls~lhQ~~GRvGR~g~~g~~il~~~~~~~ 568 (630)
T TIGR00643 539 ----GLSQLHQLRGRVGRGDHQSYCLLVYKNPKS 568 (630)
T ss_pred ----CHHHHHHHhhhcccCCCCcEEEEEECCCCC
Confidence 223333332222 34567888877744
No 200
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=57.26 E-value=11 Score=29.22 Aligned_cols=53 Identities=26% Similarity=0.266 Sum_probs=31.8
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCCHHHHHHHHHhhCCCCCCChHHHHHH
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEW 139 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~~~el~~ll~fl~p~~~~~~~~F~~~ 139 (190)
..|++|||||=.+ +-....+. +....++++|.|= .++=|+-..|.-+
T Consensus 90 ~~DlliVDEAAaI--------------p~p~L~~l---l~~~~~vv~stTi----------------~GYEGtGRgF~lk 136 (177)
T PF05127_consen 90 QADLLIVDEAAAI--------------PLPLLKQL---LRRFPRVVFSTTI----------------HGYEGTGRGFSLK 136 (177)
T ss_dssp --SCEEECTGGGS---------------HHHHHHH---HCCSSEEEEEEEB----------------SSTTBB-HHHHHH
T ss_pred CCCEEEEechhcC--------------CHHHHHHH---HhhCCEEEEEeec----------------cccccCCceeeee
Confidence 4699999999777 44444443 3456688888875 3455666777666
Q ss_pred Hhhhhh
Q psy13032 140 FSKDIE 145 (190)
Q Consensus 140 ~~~~~~ 145 (190)
|..-+.
T Consensus 137 f~~~L~ 142 (177)
T PF05127_consen 137 FLKQLK 142 (177)
T ss_dssp HHCT--
T ss_pred hhhhcc
Confidence 665444
No 201
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=56.95 E-value=13 Score=36.03 Aligned_cols=36 Identities=17% Similarity=0.159 Sum_probs=24.2
Q ss_pred CccEEEecHHHH-----Hhc-----HHHhhccCccEEEEccccccc
Q psy13032 38 SFHVVITSYQLV-----VSD-----FKYFNRIKWQYLILDEAQAIV 73 (190)
Q Consensus 38 ~~dvvitsy~~~-----~~~-----~~~l~~~~w~~vIvDEaH~lk 73 (190)
.+||++.|-+.+ +.. .....+.++.++|+|||-.|-
T Consensus 183 ~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 183 QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhh
Confidence 489999987666 221 111234578899999998774
No 202
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=56.28 E-value=13 Score=34.50 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=23.3
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecC
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGT 109 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgT 109 (190)
.+.+|||||+|+|... ......+.+........++++.|
T Consensus 119 ~~kVIIIDEad~Lt~~-----------a~naLLk~LEEP~~~~ifILaTt 157 (624)
T PRK14959 119 RYKVFIIDEAHMLTRE-----------AFNALLKTLEEPPARVTFVLATT 157 (624)
T ss_pred CceEEEEEChHhCCHH-----------HHHHHHHHhhccCCCEEEEEecC
Confidence 5789999999999431 23334444444334455656544
No 203
>KOG0346|consensus
Probab=56.24 E-value=16 Score=32.59 Aligned_cols=40 Identities=13% Similarity=0.193 Sum_probs=28.3
Q ss_pred CCccEEEecHHHHHhcHHH---hhccCccEEEEcccccccCcc
Q psy13032 37 ASFHVVITSYQLVVSDFKY---FNRIKWQYLILDEAQAIVDIN 76 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~~~---l~~~~w~~vIvDEaH~lkn~~ 76 (190)
+.+||||+|...+...... ..--.-..+|+|||.-+-...
T Consensus 144 d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfG 186 (569)
T KOG0346|consen 144 DLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFG 186 (569)
T ss_pred cCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcc
Confidence 6789999999988764331 111245789999999876643
No 204
>KOG0989|consensus
Probab=56.08 E-value=12 Score=31.80 Aligned_cols=38 Identities=24% Similarity=0.373 Sum_probs=25.7
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEec
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSG 108 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTg 108 (190)
.|.++|+||||.|-.. ..+...+.+.......|++|--
T Consensus 129 ~fKiiIlDEcdsmtsd-----------aq~aLrr~mE~~s~~trFiLIc 166 (346)
T KOG0989|consen 129 PFKIIILDECDSMTSD-----------AQAALRRTMEDFSRTTRFILIC 166 (346)
T ss_pred cceEEEEechhhhhHH-----------HHHHHHHHHhccccceEEEEEc
Confidence 5799999999998642 4455555666655556766643
No 205
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=55.99 E-value=23 Score=29.89 Aligned_cols=52 Identities=13% Similarity=0.048 Sum_probs=31.1
Q ss_pred HHHHhcHHHhh----ccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecC
Q psy13032 47 QLVVSDFKYFN----RIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGT 109 (190)
Q Consensus 47 ~~~~~~~~~l~----~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgT 109 (190)
+.++...+.+. .-.+.++|+||||++... ......+.+........++|+.+
T Consensus 93 d~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~-----------a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 93 DQIRYLKEEFSKSGVESNKKVYIIEHADKMTAS-----------AANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred HHHHHHHHHHhhCCcccCceEEEeehHhhhCHH-----------HHHHHHHHhcCCCCCceEEEEeC
Confidence 44544444332 236789999999999541 33345555555555666666554
No 206
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=55.88 E-value=14 Score=32.28 Aligned_cols=39 Identities=15% Similarity=0.331 Sum_probs=23.3
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecC
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGT 109 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgT 109 (190)
.+.++|+||+|+|... ......+.+..-.....++|+.|
T Consensus 117 ~~kViiIDead~m~~~-----------aanaLLk~LEep~~~~~fIL~a~ 155 (394)
T PRK07940 117 RWRIVVIEDADRLTER-----------AANALLKAVEEPPPRTVWLLCAP 155 (394)
T ss_pred CcEEEEEechhhcCHH-----------HHHHHHHHhhcCCCCCeEEEEEC
Confidence 5789999999999531 22334445544444555555443
No 207
>KOG0926|consensus
Probab=55.48 E-value=20 Score=34.51 Aligned_cols=77 Identities=17% Similarity=0.222 Sum_probs=38.8
Q ss_pred cEEEecHHHHHhcHH-HhhccCccEEEEcccccccCcccccccchhhhh---hhHHHHHHhcCCcCcEEEEecCCCCCCH
Q psy13032 40 HVVITSYQLVVSDFK-YFNRIKWQYLILDEAQAIVDINVYSYLNDIERE---QSMRWKLLLGFSCRNRLLLSGTPIQNSM 115 (190)
Q Consensus 40 dvvitsy~~~~~~~~-~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~---~s~~~~~~~~l~~~~r~lLTgTP~~n~~ 115 (190)
.|-.+|=+.+.++.. .|.-..+.+||+||||- ++-++.+-.+=++.. ..+.++.-+.++.-..++||+|---..+
T Consensus 351 ~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHE-RSvnTDILiGmLSRiV~LR~k~~ke~~~~kpLKLIIMSATLRVsDF 429 (1172)
T KOG0926|consen 351 SIKFMTDGVLLREIENDFLLTKYSVIILDEAHE-RSVNTDILIGMLSRIVPLRQKYYKEQCQIKPLKLIIMSATLRVSDF 429 (1172)
T ss_pred eeEEecchHHHHHHHHhHhhhhceeEEechhhh-ccchHHHHHHHHHHHHHHHHHHhhhhcccCceeEEEEeeeEEeccc
Confidence 466677777776543 12223688999999994 221222211111111 1112222223344456899999754444
Q ss_pred HH
Q psy13032 116 AE 117 (190)
Q Consensus 116 ~e 117 (190)
.|
T Consensus 430 te 431 (1172)
T KOG0926|consen 430 TE 431 (1172)
T ss_pred cc
Confidence 43
No 208
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=55.37 E-value=1.2e+02 Score=26.52 Aligned_cols=77 Identities=10% Similarity=0.043 Sum_probs=48.0
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCc--CcEEEEecCCCCCCHHHHHHHHHhhCCCC--------
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSC--RNRLLLSGTPIQNSMAELWALLHFIMPSM-------- 129 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~--~~r~lLTgTP~~n~~~el~~ll~fl~p~~-------- 129 (190)
..|+||+|++.+..... . .-+...+.+..... ...+.|++|--++.+.+.+.-+..+.+.-
T Consensus 254 ~~DlVLIDTaGr~~~~~-~--------~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~TKlDe 324 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDF-M--------KLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTKLDE 324 (388)
T ss_pred CCCEEEEcCCCCCccCH-H--------HHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEeccC
Confidence 68999999999875410 0 11233333333332 45688999998888998888776555432
Q ss_pred ---CCChHHHHHHHhhhhh
Q psy13032 130 ---FDSHDEFNEWFSKDIE 145 (190)
Q Consensus 130 ---~~~~~~F~~~~~~~~~ 145 (190)
+|..-.+......|+.
T Consensus 325 t~~~G~~l~~~~~~~~Pi~ 343 (388)
T PRK12723 325 TTCVGNLISLIYEMRKEVS 343 (388)
T ss_pred CCcchHHHHHHHHHCCCEE
Confidence 3444555566666654
No 209
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=54.54 E-value=16 Score=30.96 Aligned_cols=52 Identities=17% Similarity=0.048 Sum_probs=30.4
Q ss_pred HHHHHhcHHHhh----ccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEec
Q psy13032 46 YQLVVSDFKYFN----RIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSG 108 (190)
Q Consensus 46 y~~~~~~~~~l~----~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTg 108 (190)
-+.++.-.+.+. .-.+.++|+||||+|... ......+.+.+-.....++|+.
T Consensus 88 id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~-----------aaNaLLK~LEEPp~~~~fiL~t 143 (328)
T PRK05707 88 VDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRN-----------AANALLKSLEEPSGDTVLLLIS 143 (328)
T ss_pred HHHHHHHHHHHhhccccCCCeEEEECChhhCCHH-----------HHHHHHHHHhCCCCCeEEEEEE
Confidence 355554434332 246899999999999541 3444555555544445555544
No 210
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=54.29 E-value=18 Score=29.98 Aligned_cols=39 Identities=18% Similarity=0.375 Sum_probs=24.7
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecC
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGT 109 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgT 109 (190)
...+||+||+|.+... ......+.+.......+++++++
T Consensus 125 ~~~vlilDe~~~l~~~-----------~~~~L~~~le~~~~~~~~Il~~~ 163 (337)
T PRK12402 125 DYKTILLDNAEALRED-----------AQQALRRIMEQYSRTCRFIIATR 163 (337)
T ss_pred CCcEEEEeCcccCCHH-----------HHHHHHHHHHhccCCCeEEEEeC
Confidence 4579999999998541 22334444444555567777765
No 211
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=54.25 E-value=16 Score=31.33 Aligned_cols=40 Identities=18% Similarity=0.007 Sum_probs=26.7
Q ss_pred cCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecC
Q psy13032 59 IKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGT 109 (190)
Q Consensus 59 ~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgT 109 (190)
-.+.++|+|+||+|... ......+.+.+-.....++|+.+
T Consensus 131 ~~~kV~iI~~ae~m~~~-----------AaNaLLKtLEEPp~~t~fiL~t~ 170 (342)
T PRK06964 131 GGARVVVLYPAEALNVA-----------AANALLKTLEEPPPGTVFLLVSA 170 (342)
T ss_pred CCceEEEEechhhcCHH-----------HHHHHHHHhcCCCcCcEEEEEEC
Confidence 36899999999999542 44455566665555566665553
No 212
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=54.07 E-value=28 Score=28.53 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=26.1
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCC
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPI 111 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~ 111 (190)
...+||+||+|.+... ......+.+.......+++++++..
T Consensus 102 ~~~vviiDe~~~l~~~-----------~~~~L~~~le~~~~~~~lIl~~~~~ 142 (319)
T PRK00440 102 PFKIIFLDEADNLTSD-----------AQQALRRTMEMYSQNTRFILSCNYS 142 (319)
T ss_pred CceEEEEeCcccCCHH-----------HHHHHHHHHhcCCCCCeEEEEeCCc
Confidence 3568999999999541 2334455555555566777776543
No 213
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=53.84 E-value=14 Score=33.42 Aligned_cols=16 Identities=19% Similarity=0.432 Sum_probs=13.4
Q ss_pred cCccEEEEcccccccC
Q psy13032 59 IKWQYLILDEAQAIVD 74 (190)
Q Consensus 59 ~~w~~vIvDEaH~lkn 74 (190)
-.+.+.|+||+|++..
T Consensus 118 ~ryKVyiIDEvHMLS~ 133 (515)
T COG2812 118 GRYKVYIIDEVHMLSK 133 (515)
T ss_pred ccceEEEEecHHhhhH
Confidence 3689999999999943
No 214
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=53.66 E-value=15 Score=31.21 Aligned_cols=40 Identities=13% Similarity=0.047 Sum_probs=27.1
Q ss_pred cCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecC
Q psy13032 59 IKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGT 109 (190)
Q Consensus 59 ~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgT 109 (190)
-.+.++|+|+||+|... ......|.+.+-.....++|+.+
T Consensus 106 g~~KV~iI~~a~~m~~~-----------AaNaLLKtLEEPp~~~~fiL~t~ 145 (325)
T PRK06871 106 GGNKVVYIQGAERLTEA-----------AANALLKTLEEPRPNTYFLLQAD 145 (325)
T ss_pred CCceEEEEechhhhCHH-----------HHHHHHHHhcCCCCCeEEEEEEC
Confidence 46899999999999642 34445566666566666666554
No 215
>CHL00181 cbbX CbbX; Provisional
Probab=53.48 E-value=1.1e+02 Score=25.22 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=12.5
Q ss_pred hhccCccEEEEcccccc
Q psy13032 56 FNRIKWQYLILDEAQAI 72 (190)
Q Consensus 56 l~~~~w~~vIvDEaH~l 72 (190)
+.+..-.++++||+|.+
T Consensus 118 l~~a~ggVLfIDE~~~l 134 (287)
T CHL00181 118 LKKAMGGVLFIDEAYYL 134 (287)
T ss_pred HHHccCCEEEEEccchh
Confidence 33334478999999998
No 216
>PRK06620 hypothetical protein; Validated
Probab=53.43 E-value=34 Score=27.01 Aligned_cols=49 Identities=10% Similarity=0.242 Sum_probs=29.7
Q ss_pred ccEEEEcccccccCcccccccchhhhhhhHHHHHHhcC-CcCcEEEEecCCCCCC--HHHHHHHHH
Q psy13032 61 WQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGF-SCRNRLLLSGTPIQNS--MAELWALLH 123 (190)
Q Consensus 61 w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l-~~~~r~lLTgTP~~n~--~~el~~ll~ 123 (190)
-+++++||.|.+ .....+.....+ .....+++|+|-.+.. +.+|.+=+.
T Consensus 86 ~d~lliDdi~~~--------------~~~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~ 137 (214)
T PRK06620 86 YNAFIIEDIENW--------------QEPALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIK 137 (214)
T ss_pred CCEEEEeccccc--------------hHHHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHh
Confidence 489999999965 223344444444 4456788999843333 455555444
No 217
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=53.26 E-value=37 Score=32.96 Aligned_cols=61 Identities=18% Similarity=0.290 Sum_probs=38.2
Q ss_pred CccEEEecHHHH-----Hhc----HHHhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEec
Q psy13032 38 SFHVVITSYQLV-----VSD----FKYFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSG 108 (190)
Q Consensus 38 ~~dvvitsy~~~-----~~~----~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTg 108 (190)
.+||++.|-..+ +.. .+...+..+.++||||+-.+--. .++.-+++||
T Consensus 171 ~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiD-----------------------EArtPLIISg 227 (908)
T PRK13107 171 NADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILID-----------------------EARTPLIISG 227 (908)
T ss_pred CCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccc-----------------------cCCCceeecC
Confidence 679999875544 322 22334567899999999877542 3556678888
Q ss_pred CCCCCCHHHHHHHHH
Q psy13032 109 TPIQNSMAELWALLH 123 (190)
Q Consensus 109 TP~~n~~~el~~ll~ 123 (190)
.+ ... .++|..++
T Consensus 228 ~~-~~~-~~~y~~~~ 240 (908)
T PRK13107 228 AA-EDS-SELYIKIN 240 (908)
T ss_pred CC-ccc-hHHHHHHH
Confidence 54 333 45555444
No 218
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=52.69 E-value=16 Score=33.78 Aligned_cols=42 Identities=17% Similarity=0.238 Sum_probs=27.3
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCC
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQ 112 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~ 112 (190)
.+.+||+||+|++... ......+.+........++++.|-..
T Consensus 132 ~~KVvIIDEad~Ls~~-----------a~naLLKtLEePp~~~~fIl~tte~~ 173 (598)
T PRK09111 132 RYKVYIIDEVHMLSTA-----------AFNALLKTLEEPPPHVKFIFATTEIR 173 (598)
T ss_pred CcEEEEEEChHhCCHH-----------HHHHHHHHHHhCCCCeEEEEEeCChh
Confidence 5789999999999541 33445555555556667767655443
No 219
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=52.62 E-value=15 Score=35.35 Aligned_cols=63 Identities=11% Similarity=0.086 Sum_probs=42.4
Q ss_pred CCCCccEEEecHHHHHhc---HHHhhc--------------------cCccEEEEcccccccCcccccccchhhhhhhHH
Q psy13032 35 KDASFHVVITSYQLVVSD---FKYFNR--------------------IKWQYLILDEAQAIVDINVYSYLNDIEREQSMR 91 (190)
Q Consensus 35 ~~~~~dvvitsy~~~~~~---~~~l~~--------------------~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~ 91 (190)
....+.|+|.+.+.+.++ ...+++ ..=-.||+||-|++.. . .+.
T Consensus 157 ~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~------------~-~k~ 223 (985)
T COG3587 157 SNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLG------------D-DKT 223 (985)
T ss_pred cCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhccc------------c-hHH
Confidence 345677888888877765 222111 0123799999999975 3 788
Q ss_pred HHHHhcCCcCcEEEEecCC
Q psy13032 92 WKLLLGFSCRNRLLLSGTP 110 (190)
Q Consensus 92 ~~~~~~l~~~~r~lLTgTP 110 (190)
+.++..+++-..+=.+||-
T Consensus 224 ~~~i~~l~pl~ilRfgATf 242 (985)
T COG3587 224 YGAIKQLNPLLILRFGATF 242 (985)
T ss_pred HHHHHhhCceEEEEecccc
Confidence 9999999877655555553
No 220
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=51.92 E-value=18 Score=33.07 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=24.5
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecC
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGT 109 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgT 109 (190)
.+.++|+||+|++... ......+.+........++++.|
T Consensus 119 ~~kViIIDEa~~ls~~-----------a~naLLK~LEepp~~v~fIL~Tt 157 (546)
T PRK14957 119 RYKVYLIDEVHMLSKQ-----------SFNALLKTLEEPPEYVKFILATT 157 (546)
T ss_pred CcEEEEEechhhccHH-----------HHHHHHHHHhcCCCCceEEEEEC
Confidence 5789999999999531 33344555555444555665554
No 221
>PRK05642 DNA replication initiation factor; Validated
Probab=51.06 E-value=85 Score=24.97 Aligned_cols=88 Identities=16% Similarity=0.182 Sum_probs=46.5
Q ss_pred EEEEeC-CHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHh-hc-cCccEEEEcccccccCcccccccchhhh
Q psy13032 10 VVPYWG-SPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYF-NR-IKWQYLILDEAQAIVDINVYSYLNDIER 86 (190)
Q Consensus 10 v~~~~G-~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l-~~-~~w~~vIvDEaH~lkn~~~~~~~~~~~~ 86 (190)
.+..+| +...+..+.+-+.+.-. . ....++.++.+.+......+ .. ...|++|+|+.|.+.+...
T Consensus 47 ~l~l~G~~G~GKTHLl~a~~~~~~-~--~~~~v~y~~~~~~~~~~~~~~~~~~~~d~LiiDDi~~~~~~~~--------- 114 (234)
T PRK05642 47 LIYLWGKDGVGRSHLLQAACLRFE-Q--RGEPAVYLPLAELLDRGPELLDNLEQYELVCLDDLDVIAGKAD--------- 114 (234)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH-h--CCCcEEEeeHHHHHhhhHHHHHhhhhCCEEEEechhhhcCChH---------
Confidence 344444 44555555554322111 1 12456777777665432222 11 1458999999998865210
Q ss_pred hhhHHHHHHhcCC-cCcEEEEecC
Q psy13032 87 EQSMRWKLLLGFS-CRNRLLLSGT 109 (190)
Q Consensus 87 ~~s~~~~~~~~l~-~~~r~lLTgT 109 (190)
.....+..+..+. ....+++|+|
T Consensus 115 ~~~~Lf~l~n~~~~~g~~ilits~ 138 (234)
T PRK05642 115 WEEALFHLFNRLRDSGRRLLLAAS 138 (234)
T ss_pred HHHHHHHHHHHHHhcCCEEEEeCC
Confidence 2344555555543 3567888886
No 222
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=51.02 E-value=19 Score=33.39 Aligned_cols=40 Identities=20% Similarity=0.285 Sum_probs=24.2
Q ss_pred cCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecC
Q psy13032 59 IKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGT 109 (190)
Q Consensus 59 ~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgT 109 (190)
-.|.+||+||+|+|... ......+.+..-.....++|+.|
T Consensus 120 ~~~KViIIDEad~Lt~~-----------a~naLLK~LEePp~~tvfIL~t~ 159 (620)
T PRK14948 120 ARWKVYVIDECHMLSTA-----------AFNALLKTLEEPPPRVVFVLATT 159 (620)
T ss_pred CCceEEEEECccccCHH-----------HHHHHHHHHhcCCcCeEEEEEeC
Confidence 36889999999999541 23334444444444455555543
No 223
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=50.80 E-value=32 Score=34.10 Aligned_cols=85 Identities=14% Similarity=0.263 Sum_probs=51.3
Q ss_pred CccCCCCeEEEEeCCHHHHH--HHHHHhhhhcccCCCCCccEEEecHHHHHh-cHHHhhccCccEEEEcccccccCcccc
Q psy13032 2 ERFVPDFKVVPYWGSPQERK--ILRQFWDMKNLHTKDASFHVVITSYQLVVS-DFKYFNRIKWQYLILDEAQAIVDINVY 78 (190)
Q Consensus 2 ~k~~p~l~v~~~~G~~~~r~--~~~~~~~~~~~~~~~~~~dvvitsy~~~~~-~~~~l~~~~w~~vIvDEaH~lkn~~~~ 78 (190)
+...|++++.+-||-..++. .+...| ..+.|||+||| |+-. -++. -.-.-+|++-|+++
T Consensus 824 ~~LVPEarI~vaHGQM~e~eLE~vM~~F-------~~g~~dVLv~T--TIIEtGIDI---PnANTiIIe~AD~f------ 885 (1139)
T COG1197 824 RELVPEARIAVAHGQMRERELEEVMLDF-------YNGEYDVLVCT--TIIETGIDI---PNANTIIIERADKF------ 885 (1139)
T ss_pred HHhCCceEEEEeecCCCHHHHHHHHHHH-------HcCCCCEEEEe--eeeecCcCC---CCCceEEEeccccc------
Confidence 45689999999999776654 233222 24789999988 1111 0000 01246999999999
Q ss_pred cccchhhhhhhHHHHHHhcC-CcC---cEEEEecCCCCCC
Q psy13032 79 SYLNDIEREQSMRWKLLLGF-SCR---NRLLLSGTPIQNS 114 (190)
Q Consensus 79 ~~~~~~~~~~s~~~~~~~~l-~~~---~r~lLTgTP~~n~ 114 (190)
.-|+.++.=-++ ++. |.++| +|.+..
T Consensus 886 --------GLsQLyQLRGRVGRS~~~AYAYfl--~p~~k~ 915 (1139)
T COG1197 886 --------GLAQLYQLRGRVGRSNKQAYAYFL--YPPQKA 915 (1139)
T ss_pred --------cHHHHHHhccccCCccceEEEEEe--ecCccc
Confidence 567777654444 222 45666 454443
No 224
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=50.60 E-value=26 Score=31.44 Aligned_cols=39 Identities=26% Similarity=0.257 Sum_probs=23.5
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecC
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGT 109 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgT 109 (190)
...++|+||||.+... ......+.+........+++.+|
T Consensus 119 ~~KVvIIDEad~Lt~~-----------a~naLLk~LEepp~~~v~Il~tt 157 (486)
T PRK14953 119 KYKVYIIDEAHMLTKE-----------AFNALLKTLEEPPPRTIFILCTT 157 (486)
T ss_pred CeeEEEEEChhhcCHH-----------HHHHHHHHHhcCCCCeEEEEEEC
Confidence 4579999999999541 22334444444444556666554
No 225
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=50.10 E-value=20 Score=30.91 Aligned_cols=41 Identities=24% Similarity=0.339 Sum_probs=24.8
Q ss_pred cCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEE-EEecCC
Q psy13032 59 IKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRL-LLSGTP 110 (190)
Q Consensus 59 ~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~-lLTgTP 110 (190)
-.|.+|||||+|++-.. ......+.+........+ ++|..|
T Consensus 140 ~~~kVviIDead~m~~~-----------aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 140 GGWRVVIVDTADEMNAN-----------AANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred CCCEEEEEechHhcCHH-----------HHHHHHHHHhcCCCCeEEEEEECCc
Confidence 36889999999998431 334455555555444444 444444
No 226
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.75 E-value=16 Score=32.69 Aligned_cols=14 Identities=29% Similarity=0.624 Sum_probs=12.0
Q ss_pred CccEEEEccccccc
Q psy13032 60 KWQYLILDEAQAIV 73 (190)
Q Consensus 60 ~w~~vIvDEaH~lk 73 (190)
...+||+||+|++.
T Consensus 117 ~~kVvIIDE~h~Lt 130 (472)
T PRK14962 117 KYKVYIIDEVHMLT 130 (472)
T ss_pred CeEEEEEEChHHhH
Confidence 46799999999994
No 227
>PRK14873 primosome assembly protein PriA; Provisional
Probab=49.68 E-value=46 Score=31.19 Aligned_cols=56 Identities=9% Similarity=-0.010 Sum_probs=33.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEccccc
Q psy13032 6 PDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQA 71 (190)
Q Consensus 6 p~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~ 71 (190)
++..|.+||+.-........+. ....+...|||-|..-+ +..=-...+|||||=|-
T Consensus 213 ~~~~v~~lhS~l~~~~R~~~w~-----~~~~G~~~IViGtRSAv-----FaP~~~LgLIIvdEEhd 268 (665)
T PRK14873 213 GAGDVAVLSAGLGPADRYRRWL-----AVLRGQARVVVGTRSAV-----FAPVEDLGLVAIWDDGD 268 (665)
T ss_pred CCCcEEEECCCCCHHHHHHHHH-----HHhCCCCcEEEEcceeE-----EeccCCCCEEEEEcCCc
Confidence 3456888998554433333221 12347788999885432 22222568999999983
No 228
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=49.06 E-value=24 Score=27.39 Aligned_cols=76 Identities=16% Similarity=0.170 Sum_probs=39.6
Q ss_pred ccEEEecHHHHHhcH-HHhhc-cCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcC-CcCcEEEEecCCCCCCH
Q psy13032 39 FHVVITSYQLVVSDF-KYFNR-IKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGF-SCRNRLLLSGTPIQNSM 115 (190)
Q Consensus 39 ~dvvitsy~~~~~~~-~~l~~-~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l-~~~~r~lLTgTP~~n~~ 115 (190)
..++.++...+.... ..+.. ..-+++|+||+|.+..... .....+..+..+ ....++++|+|...+.+
T Consensus 67 ~~~~~i~~~~~~~~~~~~~~~~~~~~lLvIDdi~~l~~~~~---------~~~~L~~~l~~~~~~~~~iIits~~~~~~~ 137 (226)
T TIGR03420 67 KSAIYLPLAELAQADPEVLEGLEQADLVCLDDVEAIAGQPE---------WQEALFHLYNRVREAGGRLLIAGRAAPAQL 137 (226)
T ss_pred CcEEEEeHHHHHHhHHHHHhhcccCCEEEEeChhhhcCChH---------HHHHHHHHHHHHHHcCCeEEEECCCChHHC
Confidence 356666665554321 11111 1346899999999864100 133444444433 23357888888543322
Q ss_pred ----HHHHHHHH
Q psy13032 116 ----AELWALLH 123 (190)
Q Consensus 116 ----~el~~ll~ 123 (190)
.+|.+-+.
T Consensus 138 ~~~~~~L~~r~~ 149 (226)
T TIGR03420 138 PLRLPDLRTRLA 149 (226)
T ss_pred CcccHHHHHHHh
Confidence 45555543
No 229
>PRK10689 transcription-repair coupling factor; Provisional
Probab=48.89 E-value=1.2e+02 Score=30.42 Aligned_cols=59 Identities=14% Similarity=0.294 Sum_probs=38.4
Q ss_pred ccCCCCeEEEEeCCH--HHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEcccccc
Q psy13032 3 RFVPDFKVVPYWGSP--QERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAI 72 (190)
Q Consensus 3 k~~p~l~v~~~~G~~--~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~l 72 (190)
+..|++++.++||.. .+|..+...| ..++.+|+|+| +.+.+-.+. -.-++||++.|+++
T Consensus 831 ~~~p~~~v~~lHG~m~q~eRe~im~~F-------r~Gk~~VLVaT-dIierGIDI---P~v~~VIi~~ad~f 891 (1147)
T PRK10689 831 ELVPEARIAIGHGQMRERELERVMNDF-------HHQRFNVLVCT-TIIETGIDI---PTANTIIIERADHF 891 (1147)
T ss_pred HhCCCCcEEEEeCCCCHHHHHHHHHHH-------HhcCCCEEEEC-chhhccccc---ccCCEEEEecCCCC
Confidence 446889999999975 4455554433 23678999999 444432221 13578999888766
No 230
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=48.68 E-value=1.8e+02 Score=25.71 Aligned_cols=64 Identities=17% Similarity=0.247 Sum_probs=33.0
Q ss_pred EEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcH-H--------Hhh-cc--CccEEEEcccccccC
Q psy13032 10 VVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDF-K--------YFN-RI--KWQYLILDEAQAIVD 74 (190)
Q Consensus 10 v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~-~--------~l~-~~--~w~~vIvDEaH~lkn 74 (190)
+++|-+++..+..+.+.+.+.- ........|+.++-+.+..+. . .+. .. ..+++|+||.|.+.+
T Consensus 133 l~lyG~~G~GKTHLl~ai~~~l-~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~ 208 (440)
T PRK14088 133 LFIYGGVGLGKTHLLQSIGNYV-VQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIG 208 (440)
T ss_pred EEEEcCCCCcHHHHHHHHHHHH-HHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcC
Confidence 4555555555555555432221 111223456665555543321 1 111 11 588999999998854
No 231
>KOG0990|consensus
Probab=48.68 E-value=17 Score=31.07 Aligned_cols=43 Identities=23% Similarity=0.370 Sum_probs=31.1
Q ss_pred cCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCC
Q psy13032 59 IKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQ 112 (190)
Q Consensus 59 ~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~ 112 (190)
..|.+||+|||..+... .+....+.+....++.|+++-+-|.+
T Consensus 130 ~~fKlvILDEADaMT~~-----------AQnALRRviek~t~n~rF~ii~n~~~ 172 (360)
T KOG0990|consen 130 AAFKLVILDEADAMTRD-----------AQNALRRVIEKYTANTRFATISNPPQ 172 (360)
T ss_pred CceeEEEecchhHhhHH-----------HHHHHHHHHHHhccceEEEEeccChh
Confidence 48999999999988653 34444457777788889887654443
No 232
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.68 E-value=36 Score=31.63 Aligned_cols=53 Identities=11% Similarity=0.058 Sum_probs=30.5
Q ss_pred HHHHHhcHHHhh----ccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecC
Q psy13032 46 YQLVVSDFKYFN----RIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGT 109 (190)
Q Consensus 46 y~~~~~~~~~l~----~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgT 109 (190)
.+.++...+.+. .-.+.+||+||+|.+... ......+.+........++++.|
T Consensus 109 vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~-----------a~naLLK~LEePp~~tv~IL~t~ 165 (620)
T PRK14954 109 VDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTA-----------AFNAFLKTLEEPPPHAIFIFATT 165 (620)
T ss_pred HHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHH-----------HHHHHHHHHhCCCCCeEEEEEeC
Confidence 556655444331 235789999999999541 23344445555444555555443
No 233
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=48.43 E-value=29 Score=30.86 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=16.8
Q ss_pred HHhhccCccEEEEcccccccC
Q psy13032 54 KYFNRIKWQYLILDEAQAIVD 74 (190)
Q Consensus 54 ~~l~~~~w~~vIvDEaH~lkn 74 (190)
+.......+++|+||+|..++
T Consensus 117 ~~~dG~~~~~~i~DE~h~~~~ 137 (477)
T PF03354_consen 117 DSLDGLNPSLAIFDELHAHKD 137 (477)
T ss_pred CCccCCCCceEEEeCCCCCCC
Confidence 344456789999999999987
No 234
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=47.80 E-value=56 Score=30.61 Aligned_cols=80 Identities=15% Similarity=0.289 Sum_probs=53.5
Q ss_pred ccCCCCeEEEEeCCHH--HHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCc-----cEEEEcccccccCc
Q psy13032 3 RFVPDFKVVPYWGSPQ--ERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKW-----QYLILDEAQAIVDI 75 (190)
Q Consensus 3 k~~p~l~v~~~~G~~~--~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w-----~~vIvDEaH~lkn~ 75 (190)
++.|..+|-++||..+ ++..+.+.| +.+..||+|.| . ..+++. .++|+..|.|+
T Consensus 503 ~~~~~~~vgL~HGrm~~~eKd~vM~~F-------k~~e~~ILVaT-----T----VIEVGVdVPnATvMVIe~AERF--- 563 (677)
T COG1200 503 SFLPELKVGLVHGRMKPAEKDAVMEAF-------KEGEIDILVAT-----T----VIEVGVDVPNATVMVIENAERF--- 563 (677)
T ss_pred HHcccceeEEEecCCChHHHHHHHHHH-------HcCCCcEEEEe-----e----EEEecccCCCCeEEEEechhhh---
Confidence 5779999999999654 666666654 34567999977 1 223333 46889999998
Q ss_pred ccccccchhhhhhhHHHHHHhcC----CcCcEEEEecCCCC
Q psy13032 76 NVYSYLNDIEREQSMRWKLLLGF----SCRNRLLLSGTPIQ 112 (190)
Q Consensus 76 ~~~~~~~~~~~~~s~~~~~~~~l----~~~~r~lLTgTP~~ 112 (190)
.-++.++.=-++ ...++++++..|..
T Consensus 564 -----------GLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~ 593 (677)
T COG1200 564 -----------GLAQLHQLRGRVGRGDLQSYCVLLYKPPLS 593 (677)
T ss_pred -----------hHHHHHHhccccCCCCcceEEEEEeCCCCC
Confidence 344444332233 34579999999983
No 235
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=46.73 E-value=23 Score=33.50 Aligned_cols=40 Identities=20% Similarity=0.174 Sum_probs=24.0
Q ss_pred cCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecC
Q psy13032 59 IKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGT 109 (190)
Q Consensus 59 ~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgT 109 (190)
-.+.++|+||||.|... ......+.+........+++.+|
T Consensus 117 g~~KV~IIDEa~~LT~~-----------A~NALLKtLEEPP~~tifILaTt 156 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKS-----------AFNALLKTLEEPPKHVIFILATT 156 (725)
T ss_pred CCCEEEEEEChhhCCHH-----------HHHHHHHHhhcCCCceEEEEEcC
Confidence 35789999999999541 22234444444444455565554
No 236
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=46.45 E-value=74 Score=31.10 Aligned_cols=59 Identities=14% Similarity=0.296 Sum_probs=38.7
Q ss_pred ccCCCCeEEEEeCC--HHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEcccccc
Q psy13032 3 RFVPDFKVVPYWGS--PQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAI 72 (190)
Q Consensus 3 k~~p~l~v~~~~G~--~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~l 72 (190)
+..|++++.++||. ..+|..+.+.+ ..++.+|+|+| +.+..-.+. -.-++||++.+.+.
T Consensus 682 ~~~p~~~v~~lHG~m~~~eRe~im~~F-------~~Gk~~ILVaT-~iie~GIDI---p~v~~VIi~~a~~~ 742 (926)
T TIGR00580 682 ELVPEARIAIAHGQMTENELEEVMLEF-------YKGEFQVLVCT-TIIETGIDI---PNANTIIIERADKF 742 (926)
T ss_pred HhCCCCeEEEecCCCCHHHHHHHHHHH-------HcCCCCEEEEC-Chhhccccc---ccCCEEEEecCCCC
Confidence 44688999999996 45566555433 24678999999 344432221 13467898888765
No 237
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=46.39 E-value=40 Score=28.58 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=27.1
Q ss_pred cCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecC
Q psy13032 59 IKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGT 109 (190)
Q Consensus 59 ~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgT 109 (190)
-++.++|+|+||+|... ......|.+.+-.....++|+.+
T Consensus 107 ~~~kV~iI~~ae~m~~~-----------AaNaLLKtLEEPp~~t~fiL~t~ 146 (319)
T PRK06090 107 NGYRLFVIEPADAMNES-----------ASNALLKTLEEPAPNCLFLLVTH 146 (319)
T ss_pred CCceEEEecchhhhCHH-----------HHHHHHHHhcCCCCCeEEEEEEC
Confidence 35899999999999641 44456666666666666665543
No 238
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=45.93 E-value=24 Score=31.87 Aligned_cols=15 Identities=27% Similarity=0.516 Sum_probs=12.7
Q ss_pred CccEEEEcccccccC
Q psy13032 60 KWQYLILDEAQAIVD 74 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn 74 (190)
.+.++|+||+|++..
T Consensus 128 ~~KVvIIDEa~~Ls~ 142 (507)
T PRK06645 128 KHKIFIIDEVHMLSK 142 (507)
T ss_pred CcEEEEEEChhhcCH
Confidence 578999999999953
No 239
>KOG0991|consensus
Probab=45.83 E-value=18 Score=29.74 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=14.6
Q ss_pred hccCccEEEEcccccccC
Q psy13032 57 NRIKWQYLILDEAQAIVD 74 (190)
Q Consensus 57 ~~~~w~~vIvDEaH~lkn 74 (190)
.......||+|||..|..
T Consensus 110 p~grhKIiILDEADSMT~ 127 (333)
T KOG0991|consen 110 PPGRHKIIILDEADSMTA 127 (333)
T ss_pred CCCceeEEEeeccchhhh
Confidence 345688999999998866
No 240
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=45.13 E-value=99 Score=27.45 Aligned_cols=40 Identities=18% Similarity=0.306 Sum_probs=24.2
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcC-CcCcEEEEec
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGF-SCRNRLLLSG 108 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l-~~~~r~lLTg 108 (190)
..|++|+||+|.+.+... .....+..+..+ .....+++|+
T Consensus 206 ~~dvLiIDDiq~l~~k~~---------~~e~lf~l~N~~~~~~k~iIlts 246 (450)
T PRK14087 206 QNDVLIIDDVQFLSYKEK---------TNEIFFTIFNNFIENDKQLFFSS 246 (450)
T ss_pred cCCEEEEeccccccCCHH---------HHHHHHHHHHHHHHcCCcEEEEC
Confidence 578999999999875110 223344444444 2334678884
No 241
>PF12846 AAA_10: AAA-like domain
Probab=44.55 E-value=17 Score=29.23 Aligned_cols=16 Identities=19% Similarity=0.368 Sum_probs=13.1
Q ss_pred cCccEEEEcccccccC
Q psy13032 59 IKWQYLILDEAQAIVD 74 (190)
Q Consensus 59 ~~w~~vIvDEaH~lkn 74 (190)
...-.+++||||.+..
T Consensus 219 ~~~~~i~iDEa~~~~~ 234 (304)
T PF12846_consen 219 GRPKIIVIDEAHNFLS 234 (304)
T ss_pred CceEEEEeCCcccccc
Confidence 3567889999999976
No 242
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=43.83 E-value=21 Score=35.36 Aligned_cols=43 Identities=23% Similarity=0.251 Sum_probs=30.5
Q ss_pred ccEEEEcccccccCcccccccchhhhhhhHHHHHHhcC-CcCcEEEEecCCCCCCHHH
Q psy13032 61 WQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGF-SCRNRLLLSGTPIQNSMAE 117 (190)
Q Consensus 61 w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l-~~~~r~lLTgTP~~n~~~e 117 (190)
-+++|||||.++. .......+... ....+++|.|=|-|-...+
T Consensus 469 ~~vlVIDEAsMv~--------------~~~m~~Ll~~~~~~garvVLVGD~~QL~~V~ 512 (1102)
T PRK13826 469 KTVFVLDEAGMVA--------------SRQMALFVEAVTRAGAKLVLVGDPEQLQPIE 512 (1102)
T ss_pred CcEEEEECcccCC--------------HHHHHHHHHHHHhcCCEEEEECCHHHcCCCC
Confidence 3699999999984 34444555555 3678999999988765433
No 243
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=43.79 E-value=13 Score=28.65 Aligned_cols=14 Identities=29% Similarity=0.439 Sum_probs=11.3
Q ss_pred ccEEEEcccccccC
Q psy13032 61 WQYLILDEAQAIVD 74 (190)
Q Consensus 61 w~~vIvDEaH~lkn 74 (190)
-.++|+||||.+-+
T Consensus 80 ~~liviDEa~~~~~ 93 (193)
T PF05707_consen 80 GSLIVIDEAQNFFP 93 (193)
T ss_dssp T-EEEETTGGGTSB
T ss_pred CcEEEEECChhhcC
Confidence 45899999998876
No 244
>PRK08727 hypothetical protein; Validated
Probab=43.62 E-value=1.3e+02 Score=23.91 Aligned_cols=62 Identities=10% Similarity=0.051 Sum_probs=33.3
Q ss_pred ccEEEecHHHHHhcH-HHhhc-cCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCc-CcEEEEecC
Q psy13032 39 FHVVITSYQLVVSDF-KYFNR-IKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSC-RNRLLLSGT 109 (190)
Q Consensus 39 ~dvvitsy~~~~~~~-~~l~~-~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~-~~r~lLTgT 109 (190)
+.++.++.+.+.... +.+.. ...+++|+||+|.+..... .....+..+..+.. ...+++|+.
T Consensus 70 ~~~~y~~~~~~~~~~~~~~~~l~~~dlLiIDDi~~l~~~~~---------~~~~lf~l~n~~~~~~~~vI~ts~ 134 (233)
T PRK08727 70 RSSAYLPLQAAAGRLRDALEALEGRSLVALDGLESIAGQRE---------DEVALFDFHNRARAAGITLLYTAR 134 (233)
T ss_pred CcEEEEeHHHhhhhHHHHHHHHhcCCEEEEeCcccccCChH---------HHHHHHHHHHHHHHcCCeEEEECC
Confidence 455565655444322 22222 2578999999999865210 22234444444322 345888886
No 245
>PRK07413 hypothetical protein; Validated
Probab=42.82 E-value=56 Score=28.49 Aligned_cols=60 Identities=13% Similarity=0.178 Sum_probs=37.5
Q ss_pred HhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCCHHHHHHHH
Q psy13032 55 YFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALL 122 (190)
Q Consensus 55 ~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~~~el~~ll 122 (190)
.+.+-.+|+||+||.-..-+.. -+ +.......+..-+...-++|||--.+..+.|+-.++
T Consensus 120 ~i~sg~ydlvILDEi~~Al~~g------ll--~~eevl~~L~~rP~~~evVLTGR~ap~~Lie~ADlV 179 (382)
T PRK07413 120 AIASGLYSVVVLDELNPVLDLG------LL--PVDEVVNTLKSRPEGLEIIITGRAAPQSLLDIADLH 179 (382)
T ss_pred HHhCCCCCEEEEehhHHHHHCC------Cc--cHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHhCCee
Confidence 3455689999999986443321 11 455566666665666789999965555554444333
No 246
>PRK07413 hypothetical protein; Validated
Probab=42.67 E-value=46 Score=29.02 Aligned_cols=61 Identities=16% Similarity=0.192 Sum_probs=37.4
Q ss_pred HhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCCHHHHHHHHHhh
Q psy13032 55 YFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFI 125 (190)
Q Consensus 55 ~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~~~el~~ll~fl 125 (190)
.+.+-.||+||+||.-..-+.. -+ +.......+..-+...-++|||.- +-+.+|..+-+++
T Consensus 300 ~i~~g~ydlvVLDEi~~Al~~g------li--~~eevi~~L~~rp~~~evVLTGR~--~ap~~lie~ADlV 360 (382)
T PRK07413 300 AIASGLYKTIILDELNPTVDLE------LL--PVEPIVQTLLRKPRDTEVIITGRC--KNQPAYFDLASVH 360 (382)
T ss_pred HHhCCCCCEEEEechHHHHHCC------Cc--cHHHHHHHHHhCCCCCEEEEeCCC--CCCHHHHHhCchh
Confidence 3445689999999986544321 11 445566667666677789999953 0344444444433
No 247
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.56 E-value=33 Score=30.97 Aligned_cols=14 Identities=36% Similarity=0.439 Sum_probs=12.3
Q ss_pred CccEEEEccccccc
Q psy13032 60 KWQYLILDEAQAIV 73 (190)
Q Consensus 60 ~w~~vIvDEaH~lk 73 (190)
.+.+||+||+|++.
T Consensus 116 ~~kVVIIDEad~ls 129 (504)
T PRK14963 116 GRKVYILDEAHMMS 129 (504)
T ss_pred CCeEEEEECccccC
Confidence 68899999999884
No 248
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=42.55 E-value=32 Score=28.85 Aligned_cols=38 Identities=18% Similarity=0.175 Sum_probs=22.7
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEec
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSG 108 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTg 108 (190)
++.+||+||||.+... ......+.+........+++++
T Consensus 117 ~~~vviidea~~l~~~-----------~~~~Ll~~le~~~~~~~lIl~~ 154 (355)
T TIGR02397 117 KYKVYIIDEVHMLSKS-----------AFNALLKTLEEPPEHVVFILAT 154 (355)
T ss_pred CceEEEEeChhhcCHH-----------HHHHHHHHHhCCccceeEEEEe
Confidence 4579999999998541 2333444444444455555654
No 249
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=42.54 E-value=34 Score=32.22 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=16.5
Q ss_pred HhhccCccEEEEcccccccC
Q psy13032 55 YFNRIKWQYLILDEAQAIVD 74 (190)
Q Consensus 55 ~l~~~~w~~vIvDEaH~lkn 74 (190)
..+...+|++|||||+-++.
T Consensus 347 siRGqtfDLLIVDEAqFIk~ 366 (738)
T PHA03368 347 GIRGQDFNLLFVDEANFIRP 366 (738)
T ss_pred CccCCcccEEEEechhhCCH
Confidence 45556899999999999975
No 250
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=41.46 E-value=30 Score=31.67 Aligned_cols=16 Identities=19% Similarity=0.524 Sum_probs=13.3
Q ss_pred cCccEEEEcccccccC
Q psy13032 59 IKWQYLILDEAQAIVD 74 (190)
Q Consensus 59 ~~w~~vIvDEaH~lkn 74 (190)
-...++|+||+|.+.+
T Consensus 118 ~~~KVvIIDEa~~Ls~ 133 (563)
T PRK06647 118 SRYRVYIIDEVHMLSN 133 (563)
T ss_pred CCCEEEEEEChhhcCH
Confidence 3678999999999954
No 251
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=41.33 E-value=33 Score=28.86 Aligned_cols=38 Identities=13% Similarity=0.207 Sum_probs=26.1
Q ss_pred cCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEec
Q psy13032 59 IKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSG 108 (190)
Q Consensus 59 ~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTg 108 (190)
-.+.+||+|+||.|... ......+.+.... ...++|..
T Consensus 123 ~~~kVvII~~ae~m~~~-----------aaNaLLK~LEEPp-~~~fILi~ 160 (314)
T PRK07399 123 APRKVVVIEDAETMNEA-----------AANALLKTLEEPG-NGTLILIA 160 (314)
T ss_pred CCceEEEEEchhhcCHH-----------HHHHHHHHHhCCC-CCeEEEEE
Confidence 36899999999999541 3445666666666 55666654
No 252
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=40.88 E-value=1.1e+02 Score=20.53 Aligned_cols=17 Identities=41% Similarity=0.655 Sum_probs=13.9
Q ss_pred ccCccEEEEcccccccC
Q psy13032 58 RIKWQYLILDEAQAIVD 74 (190)
Q Consensus 58 ~~~w~~vIvDEaH~lkn 74 (190)
....+++++||++++..
T Consensus 76 ~~~~~viiiDei~~~~~ 92 (148)
T smart00382 76 KLKPDVLILDEITSLLD 92 (148)
T ss_pred hcCCCEEEEECCcccCC
Confidence 33469999999999976
No 253
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=40.77 E-value=27 Score=33.07 Aligned_cols=40 Identities=23% Similarity=0.274 Sum_probs=27.0
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcC-CcCcEEEEecCCCCC
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGF-SCRNRLLLSGTPIQN 113 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l-~~~~r~lLTgTP~~n 113 (190)
..+++|||||.++.. ......+... ....+++|.|=|-|-
T Consensus 439 ~~~llIvDEasMv~~--------------~~~~~Ll~~~~~~~~kliLVGD~~QL 479 (744)
T TIGR02768 439 DKDVLVIDEAGMVGS--------------RQMARVLKEAEEAGAKVVLVGDPEQL 479 (744)
T ss_pred CCcEEEEECcccCCH--------------HHHHHHHHHHHhcCCEEEEECChHHc
Confidence 568999999999854 2333444322 456789999966553
No 254
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=40.62 E-value=1.7e+02 Score=27.39 Aligned_cols=57 Identities=11% Similarity=0.347 Sum_probs=36.9
Q ss_pred CCCCeEEEEeCC--HHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEcccccc
Q psy13032 5 VPDFKVVPYWGS--PQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAI 72 (190)
Q Consensus 5 ~p~l~v~~~~G~--~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~l 72 (190)
.|+.+|..+||. ..+|..+.+.|. .++.+|+|+| +.+..-.+. . .-++||+..+.+.
T Consensus 503 ~~~~~v~~lHG~m~~~eR~~i~~~F~-------~g~~~ILVaT-~vie~GiDi-p--~v~~VIi~~~~r~ 561 (681)
T PRK10917 503 FPELRVGLLHGRMKPAEKDAVMAAFK-------AGEIDILVAT-TVIEVGVDV-P--NATVMVIENAERF 561 (681)
T ss_pred CCCCcEEEEeCCCCHHHHHHHHHHHH-------cCCCCEEEEC-cceeeCccc-C--CCcEEEEeCCCCC
Confidence 456889999997 677777766542 3567899998 333332221 1 3467888777664
No 255
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=40.53 E-value=37 Score=32.70 Aligned_cols=55 Identities=16% Similarity=0.119 Sum_probs=34.6
Q ss_pred CCeEEEEeCCH--HHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhc---------HHHhhccCccEEEEcccccccC
Q psy13032 7 DFKVVPYWGSP--QERKILRQFWDMKNLHTKDASFHVVITSYQLVVSD---------FKYFNRIKWQYLILDEAQAIVD 74 (190)
Q Consensus 7 ~l~v~~~~G~~--~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~---------~~~l~~~~w~~vIvDEaH~lkn 74 (190)
+++|.+..|.. .+++.. -.+||++.|...+.-+ .+.+...+.+++|||||-.+-=
T Consensus 150 Glsv~~i~~~~~~~er~~~-------------y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLI 215 (830)
T PRK12904 150 GLSVGVILSGMSPEERREA-------------YAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILI 215 (830)
T ss_pred CCeEEEEcCCCCHHHHHHh-------------cCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhee
Confidence 67888777743 222221 2379999887766321 1223345788999999987753
No 256
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=40.26 E-value=56 Score=20.56 Aligned_cols=53 Identities=17% Similarity=0.262 Sum_probs=29.9
Q ss_pred CCCeEEEEeC--CHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEccc
Q psy13032 6 PDFKVVPYWG--SPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEA 69 (190)
Q Consensus 6 p~l~v~~~~G--~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEa 69 (190)
+++++..++| +..+|..+.+.|.. +..+|+|+| +.+..-.+. -.-+.||.-+.
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~-------~~~~vli~t-~~~~~Gid~---~~~~~vi~~~~ 60 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNS-------GEIRVLIAT-DILGEGIDL---PDASHVIFYDP 60 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHT-------TSSSEEEES-CGGTTSSTS---TTESEEEESSS
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhc-------cCceEEEee-ccccccccc---ccccccccccc
Confidence 4788999999 44555666654422 344899988 333322211 12355665554
No 257
>KOG1805|consensus
Probab=39.68 E-value=29 Score=33.86 Aligned_cols=41 Identities=32% Similarity=0.425 Sum_probs=29.1
Q ss_pred HhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCC
Q psy13032 55 YFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQ 112 (190)
Q Consensus 55 ~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~ 112 (190)
.|....||++|+|||..+-- + -.+..+....++.|-|-+.|
T Consensus 791 lf~~R~FD~cIiDEASQI~l------------P-----~~LgPL~~s~kFVLVGDh~Q 831 (1100)
T KOG1805|consen 791 LFVNRQFDYCIIDEASQILL------------P-----LCLGPLSFSNKFVLVGDHYQ 831 (1100)
T ss_pred hhhccccCEEEEcccccccc------------c-----hhhhhhhhcceEEEeccccc
Confidence 45566799999999987743 1 23445566778888887765
No 258
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.49 E-value=34 Score=31.43 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=23.2
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecC
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGT 109 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgT 109 (190)
.+.+||+||+|.|... ......+.+........++++.|
T Consensus 120 ~~kVvIIDEa~~L~~~-----------a~naLLk~LEepp~~tv~Il~t~ 158 (585)
T PRK14950 120 RYKVYIIDEVHMLSTA-----------AFNALLKTLEEPPPHAIFILATT 158 (585)
T ss_pred CeEEEEEeChHhCCHH-----------HHHHHHHHHhcCCCCeEEEEEeC
Confidence 5789999999999541 22233444444444455555543
No 259
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.35 E-value=76 Score=29.45 Aligned_cols=39 Identities=21% Similarity=0.217 Sum_probs=25.7
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecC
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGT 109 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgT 109 (190)
.+.+||+||+|++... ......+.+........++|+.|
T Consensus 121 ~~KVvIIdea~~Ls~~-----------a~naLLK~LEepp~~tifIL~tt 159 (614)
T PRK14971 121 KYKIYIIDEVHMLSQA-----------AFNAFLKTLEEPPSYAIFILATT 159 (614)
T ss_pred CcEEEEEECcccCCHH-----------HHHHHHHHHhCCCCCeEEEEEeC
Confidence 5789999999999531 33344555555555566777666
No 260
>KOG0924|consensus
Probab=39.14 E-value=17 Score=34.35 Aligned_cols=57 Identities=19% Similarity=0.331 Sum_probs=33.1
Q ss_pred CccEEEEccccc-ccCcccccccchhhhhhhHHHHHHhcCCc---Cc-EEEEecCCCCCCHHHHHH-HHHhhCCCC
Q psy13032 60 KWQYLILDEAQA-IVDINVYSYLNDIEREQSMRWKLLLGFSC---RN-RLLLSGTPIQNSMAELWA-LLHFIMPSM 129 (190)
Q Consensus 60 ~w~~vIvDEaH~-lkn~~~~~~~~~~~~~~s~~~~~~~~l~~---~~-r~lLTgTP~~n~~~el~~-ll~fl~p~~ 129 (190)
.+.+||+||||- --| .-..+..++.+-+ .. .++.|+|-=..++.++|+ -=.|-.|+.
T Consensus 468 kYSviImDEAHERslN-------------tDilfGllk~~larRrdlKliVtSATm~a~kf~nfFgn~p~f~IpGR 530 (1042)
T KOG0924|consen 468 KYSVIIMDEAHERSLN-------------TDILFGLLKKVLARRRDLKLIVTSATMDAQKFSNFFGNCPQFTIPGR 530 (1042)
T ss_pred heeEEEechhhhcccc-------------hHHHHHHHHHHHHhhccceEEEeeccccHHHHHHHhCCCceeeecCC
Confidence 578999999994 222 2223333333322 32 366778877777777776 223444554
No 261
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=38.56 E-value=36 Score=28.45 Aligned_cols=52 Identities=15% Similarity=0.073 Sum_probs=30.3
Q ss_pred HHHHHhcHHHhh----ccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEec
Q psy13032 46 YQLVVSDFKYFN----RIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSG 108 (190)
Q Consensus 46 y~~~~~~~~~l~----~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTg 108 (190)
-+.++.-...+. .-.|.++|+|+|++|... ......+.+..-.....++|+.
T Consensus 86 idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~-----------AaNaLLKtLEEPp~~t~~iL~t 141 (290)
T PRK07276 86 TDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVN-----------AANSLLKVIEEPQSEIYIFLLT 141 (290)
T ss_pred HHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHH-----------HHHHHHHHhcCCCCCeEEEEEE
Confidence 345554334332 236889999999999641 3334555555555555555544
No 262
>PRK13342 recombination factor protein RarA; Reviewed
Probab=38.10 E-value=34 Score=29.77 Aligned_cols=14 Identities=21% Similarity=0.361 Sum_probs=11.9
Q ss_pred CccEEEEccccccc
Q psy13032 60 KWQYLILDEAQAIV 73 (190)
Q Consensus 60 ~w~~vIvDEaH~lk 73 (190)
...++++||+|++.
T Consensus 92 ~~~vL~IDEi~~l~ 105 (413)
T PRK13342 92 RRTILFIDEIHRFN 105 (413)
T ss_pred CceEEEEechhhhC
Confidence 56789999999984
No 263
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=37.82 E-value=38 Score=31.36 Aligned_cols=39 Identities=21% Similarity=0.191 Sum_probs=23.3
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecC
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGT 109 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgT 109 (190)
++.++|+||||.|... ......+.+........++++.|
T Consensus 119 ~~KVIIIDEad~Lt~~-----------A~NaLLKtLEEPp~~tvfIL~Tt 157 (605)
T PRK05896 119 KYKVYIIDEAHMLSTS-----------AWNALLKTLEEPPKHVVFIFATT 157 (605)
T ss_pred CcEEEEEechHhCCHH-----------HHHHHHHHHHhCCCcEEEEEECC
Confidence 5679999999999531 22334444444444455555554
No 264
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=37.82 E-value=38 Score=28.68 Aligned_cols=39 Identities=28% Similarity=0.093 Sum_probs=27.2
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecC
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGT 109 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgT 109 (190)
.+.++|+|+|++|... ......|.+.+-.....++|++.
T Consensus 113 ~~kV~iI~~ae~m~~~-----------AaNaLLKtLEEPp~~~~fiL~~~ 151 (319)
T PRK08769 113 IAQVVIVDPADAINRA-----------ACNALLKTLEEPSPGRYLWLISA 151 (319)
T ss_pred CcEEEEeccHhhhCHH-----------HHHHHHHHhhCCCCCCeEEEEEC
Confidence 5789999999999541 44445666666666666777664
No 265
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=37.44 E-value=34 Score=33.62 Aligned_cols=43 Identities=21% Similarity=0.248 Sum_probs=30.0
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcC-CcCcEEEEecCCCCCCHH
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGF-SCRNRLLLSGTPIQNSMA 116 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l-~~~~r~lLTgTP~~n~~~ 116 (190)
.-+++|||||.++.. ....+.+... ....+++|.|=|-|-...
T Consensus 433 ~~~vlIVDEASMv~~--------------~~m~~LL~~a~~~garvVLVGD~~QLpsV 476 (988)
T PRK13889 433 SRDVLVIDEAGMVGT--------------RQLERVLSHAADAGAKVVLVGDPQQLQAI 476 (988)
T ss_pred cCcEEEEECcccCCH--------------HHHHHHHHhhhhCCCEEEEECCHHHcCCC
Confidence 347999999999843 3444444433 567899999988876443
No 266
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=37.06 E-value=48 Score=28.89 Aligned_cols=14 Identities=43% Similarity=0.712 Sum_probs=12.5
Q ss_pred cEEEEcccccccCc
Q psy13032 62 QYLILDEAQAIVDI 75 (190)
Q Consensus 62 ~~vIvDEaH~lkn~ 75 (190)
.++++||.|.++++
T Consensus 96 ~yifLDEIq~v~~W 109 (398)
T COG1373 96 SYIFLDEIQNVPDW 109 (398)
T ss_pred ceEEEecccCchhH
Confidence 58999999999984
No 267
>COG1112 Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair]
Probab=36.95 E-value=34 Score=31.87 Aligned_cols=60 Identities=20% Similarity=0.402 Sum_probs=37.5
Q ss_pred EEEecHHHHHhcHHHhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCCHHHHH
Q psy13032 41 VVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNSMAELW 119 (190)
Q Consensus 41 vvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~~~el~ 119 (190)
+++++...... ..+....+|++|+|||-.+.. +. ++-.+.....+++.|=|-|..+..++
T Consensus 471 ~~~~~~~~a~~--~~~~~~~fd~viiDEAsQ~~~------------~~-----~~~~l~~~~~~il~GD~kQL~p~~~~ 530 (767)
T COG1112 471 VVLSTLSIAGF--SILKKYEFDYVIIDEASQATE------------PS-----ALIALSRAKKVILVGDHKQLPPTVFF 530 (767)
T ss_pred eEEEeccchhH--HHhcccccCEEEEcchhcccc------------hh-----HHHhHhhcCeEEEecCCccCCCeecc
Confidence 55555443322 233444899999999977755 22 22333337788899988887666543
No 268
>PRK11054 helD DNA helicase IV; Provisional
Probab=36.80 E-value=79 Score=29.76 Aligned_cols=42 Identities=21% Similarity=0.329 Sum_probs=27.7
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCC
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQN 113 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n 113 (190)
.|+.|+|||+|-+-. ..-...+.+..-.....+.+.|=|-|.
T Consensus 430 ~~~~IlVDE~QD~s~------------~q~~ll~~l~~~~~~~~l~~VGD~~Qs 471 (684)
T PRK11054 430 PWKHILVDEFQDISP------------QRAALLAALRKQNSQTTLFAVGDDWQA 471 (684)
T ss_pred cccEEEEEccccCCH------------HHHHHHHHHhccCCCCeEEEEECCCcc
Confidence 499999999998743 443344444322334577888988874
No 269
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=36.61 E-value=41 Score=28.00 Aligned_cols=53 Identities=9% Similarity=-0.013 Sum_probs=31.7
Q ss_pred cHHHHHhcHHHhh----ccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEec
Q psy13032 45 SYQLVVSDFKYFN----RIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSG 108 (190)
Q Consensus 45 sy~~~~~~~~~l~----~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTg 108 (190)
+.+.++...+.+. .-++.++|+|+||++... ......+.+........++|+.
T Consensus 74 ~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~-----------a~naLLK~LEepp~~t~~il~~ 130 (313)
T PRK05564 74 GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQ-----------AQNAFLKTIEEPPKGVFIILLC 130 (313)
T ss_pred CHHHHHHHHHHHhcCcccCCceEEEEechhhcCHH-----------HHHHHHHHhcCCCCCeEEEEEe
Confidence 4455655444332 236789999999999541 3334555555555555666655
No 270
>PRK09087 hypothetical protein; Validated
Probab=36.17 E-value=1.1e+02 Score=24.24 Aligned_cols=49 Identities=12% Similarity=0.179 Sum_probs=30.8
Q ss_pred cEEEEcccccccCcccccccchhhhhhhHHHHHHhcC-CcCcEEEEecCCCCC----CHHHHHHHH
Q psy13032 62 QYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGF-SCRNRLLLSGTPIQN----SMAELWALL 122 (190)
Q Consensus 62 ~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l-~~~~r~lLTgTP~~n----~~~el~~ll 122 (190)
+++++|+.|.+.. .....+..+..+ .....+++|++--.. ...+|.+-+
T Consensus 89 ~~l~iDDi~~~~~------------~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl 142 (226)
T PRK09087 89 GPVLIEDIDAGGF------------DETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRL 142 (226)
T ss_pred CeEEEECCCCCCC------------CHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHH
Confidence 7899999998754 445566666655 335678888863222 234555544
No 271
>KOG0348|consensus
Probab=35.51 E-value=41 Score=30.92 Aligned_cols=67 Identities=22% Similarity=0.403 Sum_probs=42.3
Q ss_pred CccEEEecHHHHHhcHHHhhcc---CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcC---Cc--------CcE
Q psy13032 38 SFHVVITSYQLVVSDFKYFNRI---KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGF---SC--------RNR 103 (190)
Q Consensus 38 ~~dvvitsy~~~~~~~~~l~~~---~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l---~~--------~~r 103 (190)
..+|+|-|-+.+.-+...-..+ .-..+|+|||.+|-...... .-+++.+++... .+ ...
T Consensus 262 GiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfek-------dit~Il~~v~~~~~~e~~~~~lp~q~q~ 334 (708)
T KOG0348|consen 262 GINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEK-------DITQILKAVHSIQNAECKDPKLPHQLQN 334 (708)
T ss_pred CceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchh-------hHHHHHHHHhhccchhcccccccHHHHh
Confidence 4789999999887654422222 34569999999997643221 556666666443 11 235
Q ss_pred EEEecCCC
Q psy13032 104 LLLSGTPI 111 (190)
Q Consensus 104 ~lLTgTP~ 111 (190)
++||+|--
T Consensus 335 mLlSATLt 342 (708)
T KOG0348|consen 335 MLLSATLT 342 (708)
T ss_pred HhhhhhhH
Confidence 78888853
No 272
>PF05586 Ant_C: Anthrax receptor C-terminus region; InterPro: IPR008399 Anthrax is an acute disease in humans and animals caused by the bacterium Bacillus anthracis, which can be lethal. There are effective vaccines against anthrax, and some forms of the disease respond well to antibiotic treatment. The anthrax bacillus is one of only a few that can form long-lived spores. The anthrax toxin consists of the proteins protective antigen (PA) lethal factor (LF) and oedema factor (EF). The first step of toxin entry into host cells is the recognition by PA of a receptor on the surface of the target cell. The subsequent cleavage of receptor-bound PA enables EF and LF to bind and form a heptameric PA63 pre-pore, which triggers endocytosis. PA has been shown to bind to two cellular receptors: anthrax toxin receptor/tumour endothelial marker 8 and capillary morphogenesis protein 2 (CMG2), which are closely related host cell receptors. Both bind to PA with high affinity and are capable of mediating toxicity [, ], and both are type 1 membrane proteins that include an approximately 200-aa extracellular von Willebrand factor A (VWA) domain with a metal ion-dependent adhesion site (MIDAS) motif []. This region is found in the putatively cytoplasmic C terminus of the anthrax receptor.; GO: 0004872 receptor activity, 0016021 integral to membrane
Probab=35.09 E-value=29 Score=23.70 Aligned_cols=16 Identities=50% Similarity=0.906 Sum_probs=14.8
Q ss_pred cCCCCCCHHHHHHHHH
Q psy13032 108 GTPIQNSMAELWALLH 123 (190)
Q Consensus 108 gTP~~n~~~el~~ll~ 123 (190)
-||+.++++-||.||.
T Consensus 53 YtPIKGrlDALwaLlR 68 (95)
T PF05586_consen 53 YTPIKGRLDALWALLR 68 (95)
T ss_pred ccCccchHHHHHHHHH
Confidence 5899999999999987
No 273
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=34.66 E-value=43 Score=31.76 Aligned_cols=14 Identities=29% Similarity=0.394 Sum_probs=11.8
Q ss_pred CccEEEEccccccc
Q psy13032 60 KWQYLILDEAQAIV 73 (190)
Q Consensus 60 ~w~~vIvDEaH~lk 73 (190)
...++|+||+|++.
T Consensus 109 ~~~IL~IDEIh~Ln 122 (725)
T PRK13341 109 KRTILFIDEVHRFN 122 (725)
T ss_pred CceEEEEeChhhCC
Confidence 46789999999984
No 274
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=34.60 E-value=1.8e+02 Score=25.87 Aligned_cols=89 Identities=9% Similarity=0.066 Sum_probs=44.5
Q ss_pred EEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcH---------HHhh--ccCccEEEEcccccccCcccc
Q psy13032 10 VVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDF---------KYFN--RIKWQYLILDEAQAIVDINVY 78 (190)
Q Consensus 10 v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~---------~~l~--~~~w~~vIvDEaH~lkn~~~~ 78 (190)
+++|.+++..+..+.+.+.+.- .. ....|+.++.+.+..+. ..+. -...|++|+||.|.+.+...
T Consensus 144 l~L~G~~G~GKTHLl~Ai~~~l-~~--~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~k~~- 219 (445)
T PRK12422 144 IYLFGPEGSGKTHLMQAAVHAL-RE--SGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGA- 219 (445)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH-HH--cCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcCChh-
Confidence 4455444445555544322111 11 13567777776654321 1121 13578999999999865210
Q ss_pred cccchhhhhhhHHHHHHhcC-CcCcEEEEecCC
Q psy13032 79 SYLNDIEREQSMRWKLLLGF-SCRNRLLLSGTP 110 (190)
Q Consensus 79 ~~~~~~~~~~s~~~~~~~~l-~~~~r~lLTgTP 110 (190)
.....+..+..+ .....+++|++-
T Consensus 220 --------~qeelf~l~N~l~~~~k~IIlts~~ 244 (445)
T PRK12422 220 --------TQEEFFHTFNSLHTEGKLIVISSTC 244 (445)
T ss_pred --------hHHHHHHHHHHHHHCCCcEEEecCC
Confidence 122333333333 234568888853
No 275
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=33.91 E-value=56 Score=26.37 Aligned_cols=39 Identities=23% Similarity=0.395 Sum_probs=23.6
Q ss_pred cCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcC-CcCcEEEEecCCCC
Q psy13032 59 IKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGF-SCRNRLLLSGTPIQ 112 (190)
Q Consensus 59 ~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l-~~~~r~lLTgTP~~ 112 (190)
-.++.|+|||+|-+-. .. +..+..+ .....+++.|=|-|
T Consensus 255 ~~~~~i~IDE~QD~s~------------~Q---~~il~~l~~~~~~~~~vGD~~Q 294 (315)
T PF00580_consen 255 QRYDHILIDEFQDTSP------------LQ---LRILKKLFKNPENLFIVGDPNQ 294 (315)
T ss_dssp HHSSEEEESSGGG-BH------------HH---HHHHHHHHTTTTTEEEEE-GGG
T ss_pred hhCCeEEeEccccCCH------------HH---HHHHHHHHHhhceeEEeCCCCc
Confidence 3689999999997633 22 3344444 22224888898876
No 276
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=33.64 E-value=62 Score=26.70 Aligned_cols=53 Identities=13% Similarity=0.070 Sum_probs=25.9
Q ss_pred hhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCC
Q psy13032 56 FNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTP 110 (190)
Q Consensus 56 l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP 110 (190)
+.+..=.++++||+|.+....... +..........+.+..-....+++++|++
T Consensus 117 ~~~a~~gvL~iDEi~~L~~~~~~~--~~~~~~~~~Ll~~le~~~~~~~vI~a~~~ 169 (284)
T TIGR02880 117 LKRAMGGVLFIDEAYYLYRPDNER--DYGQEAIEILLQVMENQRDDLVVILAGYK 169 (284)
T ss_pred HHHccCcEEEEechhhhccCCCcc--chHHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 333334789999999883210000 00000122333444333445577788875
No 277
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=33.59 E-value=46 Score=28.30 Aligned_cols=39 Identities=15% Similarity=0.038 Sum_probs=26.4
Q ss_pred cCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEec
Q psy13032 59 IKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSG 108 (190)
Q Consensus 59 ~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTg 108 (190)
-.|.++|+|+|++|... ......|.+.+-.....++|+.
T Consensus 107 g~~kV~iI~~ae~m~~~-----------AaNaLLKtLEEPp~~t~fiL~t 145 (334)
T PRK07993 107 GGAKVVWLPDAALLTDA-----------AANALLKTLEEPPENTWFFLAC 145 (334)
T ss_pred CCceEEEEcchHhhCHH-----------HHHHHHHHhcCCCCCeEEEEEE
Confidence 36899999999999641 4444556665555566666655
No 278
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=33.47 E-value=76 Score=31.46 Aligned_cols=79 Identities=15% Similarity=0.170 Sum_probs=45.5
Q ss_pred CCeEEEEeC---CHHHHHHHHHHhhhhcccCCCCCccEEEecHHHH-----Hh----cHHHhhccCccEEEEcccccccC
Q psy13032 7 DFKVVPYWG---SPQERKILRQFWDMKNLHTKDASFHVVITSYQLV-----VS----DFKYFNRIKWQYLILDEAQAIVD 74 (190)
Q Consensus 7 ~l~v~~~~G---~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~-----~~----~~~~l~~~~w~~vIvDEaH~lkn 74 (190)
+++|-+... +..+|+.. -.+||+-+|-..+ +- ..+.+.+.++.++||||+-.+-=
T Consensus 238 GLsvg~i~~~~~~~~~rr~a-------------Y~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSILI 304 (1112)
T PRK12901 238 GLSVDCIDKHQPNSEARRKA-------------YNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVLI 304 (1112)
T ss_pred CCceeecCCCCCCHHHHHHh-------------CCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhhh
Confidence 677776643 44555433 3567776553322 22 23445567899999999976532
Q ss_pred cccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCCHHHHHHHH
Q psy13032 75 INVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALL 122 (190)
Q Consensus 75 ~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~~~el~~ll 122 (190)
. .++.-+++||. ..+.-.++|..+
T Consensus 305 D-----------------------EARTPLIISGp-~~~~~~~~y~~~ 328 (1112)
T PRK12901 305 D-----------------------DARTPLIISGP-VPKGDDQEFEEL 328 (1112)
T ss_pred c-----------------------cccCcEEEeCC-CCCccHHHHHHH
Confidence 1 46667889984 344433444333
No 279
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=33.31 E-value=47 Score=29.47 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=23.4
Q ss_pred cCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEec
Q psy13032 59 IKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSG 108 (190)
Q Consensus 59 ~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTg 108 (190)
-.+.+||+||+|++... ......+.+........++++.
T Consensus 120 ~~~kvvIIdead~lt~~-----------~~n~LLk~lEep~~~~~~Il~t 158 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKE-----------AFNSLLKTLEEPPQHVKFFLAT 158 (451)
T ss_pred CCCEEEEEecHHhhCHH-----------HHHHHHHHhhcCCCCceEEEEe
Confidence 46889999999999531 2223444444444444565554
No 280
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=32.40 E-value=1.1e+02 Score=21.00 Aligned_cols=15 Identities=20% Similarity=0.166 Sum_probs=13.0
Q ss_pred ccEEEEcccccccCc
Q psy13032 61 WQYLILDEAQAIVDI 75 (190)
Q Consensus 61 w~~vIvDEaH~lkn~ 75 (190)
..++++||+|.+...
T Consensus 59 ~~vl~iDe~d~l~~~ 73 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPK 73 (132)
T ss_dssp SEEEEEETGGGTSHH
T ss_pred ceeeeeccchhcccc
Confidence 789999999999763
No 281
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.14 E-value=54 Score=27.85 Aligned_cols=15 Identities=27% Similarity=0.580 Sum_probs=12.0
Q ss_pred CccEEEEcccccccC
Q psy13032 60 KWQYLILDEAQAIVD 74 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn 74 (190)
...+||+||+|.+..
T Consensus 108 ~~kiviIDE~~~l~~ 122 (367)
T PRK14970 108 KYKIYIIDEVHMLSS 122 (367)
T ss_pred CcEEEEEeChhhcCH
Confidence 357999999998853
No 282
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=31.81 E-value=2e+02 Score=26.92 Aligned_cols=91 Identities=16% Similarity=0.141 Sum_probs=47.3
Q ss_pred EEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcH-H--------Hhhc--cCccEEEEcccccccCcccc
Q psy13032 10 VVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDF-K--------YFNR--IKWQYLILDEAQAIVDINVY 78 (190)
Q Consensus 10 v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~-~--------~l~~--~~w~~vIvDEaH~lkn~~~~ 78 (190)
+++|-++...+..+.+-+.+... .....+.|+.++.+.+..+. . .+.+ ...|++|+|+.|.+.+...
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~-~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke~- 394 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYAR-RLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKES- 394 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCHH-
Confidence 45555455555555554322211 11124567777776654321 1 1111 2469999999999976211
Q ss_pred cccchhhhhhhHHHHHHhcCCc-CcEEEEecCC
Q psy13032 79 SYLNDIEREQSMRWKLLLGFSC-RNRLLLSGTP 110 (190)
Q Consensus 79 ~~~~~~~~~~s~~~~~~~~l~~-~~r~lLTgTP 110 (190)
.....+..+..+.. ...+++|+.-
T Consensus 395 --------tqeeLF~l~N~l~e~gk~IIITSd~ 419 (617)
T PRK14086 395 --------TQEEFFHTFNTLHNANKQIVLSSDR 419 (617)
T ss_pred --------HHHHHHHHHHHHHhcCCCEEEecCC
Confidence 23345555555532 3456677643
No 283
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=31.81 E-value=86 Score=24.26 Aligned_cols=54 Identities=9% Similarity=0.070 Sum_probs=31.8
Q ss_pred CCCccEEEecHHHHHhcHHHhhc--cCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcC-CcCcE
Q psy13032 36 DASFHVVITSYQLVVSDFKYFNR--IKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGF-SCRNR 103 (190)
Q Consensus 36 ~~~~dvvitsy~~~~~~~~~l~~--~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l-~~~~r 103 (190)
.++|.|-+-..+.+.. ..+.. ..-|+||+||.-.|-. ..-+...++..+ ++...
T Consensus 76 vGkY~V~v~~le~i~~--~al~rA~~~aDvIIIDEIGpMEl------------ks~~f~~~ve~vl~~~kp 132 (179)
T COG1618 76 VGKYGVNVEGLEEIAI--PALRRALEEADVIIIDEIGPMEL------------KSKKFREAVEEVLKSGKP 132 (179)
T ss_pred cceEEeeHHHHHHHhH--HHHHHHhhcCCEEEEecccchhh------------ccHHHHHHHHHHhcCCCc
Confidence 3566666666553332 22221 2369999999999987 555566666554 44443
No 284
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=31.75 E-value=2e+02 Score=24.84 Aligned_cols=41 Identities=12% Similarity=0.221 Sum_probs=24.1
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcC-CcCcEEEEecC
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGF-SCRNRLLLSGT 109 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l-~~~~r~lLTgT 109 (190)
..+++|+||.|.+.+... .....+..+..+ .....+++|++
T Consensus 199 ~~dlLiiDDi~~l~~~~~---------~~~~l~~~~n~~~~~~~~iiits~ 240 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGKER---------TQEEFFHTFNALHENGKQIVLTSD 240 (405)
T ss_pred hCCEEEEehhhhhcCCHH---------HHHHHHHHHHHHHHCCCCEEEecC
Confidence 468999999999865210 122334444433 23345777775
No 285
>PRK13578 ornithine decarboxylase; Provisional
Probab=31.33 E-value=21 Score=33.72 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=20.4
Q ss_pred EEEe--cHHHHHhcHHHhhcc---CccEEEEcccc
Q psy13032 41 VVIT--SYQLVVSDFKYFNRI---KWQYLILDEAQ 70 (190)
Q Consensus 41 vvit--sy~~~~~~~~~l~~~---~w~~vIvDEaH 70 (190)
+||| ||+-+..+...+.+. ..+.|++||||
T Consensus 286 vvit~pTYdG~~ydi~~I~~~~~h~~~~llvDEAh 320 (720)
T PRK13578 286 AVIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAW 320 (720)
T ss_pred EEEECCCCcceeecHHHHHHHhhccCCcEEEeCcc
Confidence 5554 777666666655433 35689999998
No 286
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=31.07 E-value=1.3e+02 Score=18.39 Aligned_cols=32 Identities=22% Similarity=0.447 Sum_probs=20.4
Q ss_pred CCeEEEEeC--CHHHHHHHHHHhhhhcccCCCCCccEEEec
Q psy13032 7 DFKVVPYWG--SPQERKILRQFWDMKNLHTKDASFHVVITS 45 (190)
Q Consensus 7 ~l~v~~~~G--~~~~r~~~~~~~~~~~~~~~~~~~dvvits 45 (190)
+..+..++| +.++|....+.|. .+...++|+|
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~-------~~~~~vli~t 44 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFN-------NGKIKVLVAT 44 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHH-------cCCCeEEEEC
Confidence 567889999 5566666655442 1334777777
No 287
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=31.03 E-value=51 Score=26.07 Aligned_cols=14 Identities=29% Similarity=0.408 Sum_probs=12.2
Q ss_pred ccEEEEcccccccC
Q psy13032 61 WQYLILDEAQAIVD 74 (190)
Q Consensus 61 w~~vIvDEaH~lkn 74 (190)
.++|.+||||-+..
T Consensus 83 ~~~v~IDEaQF~~~ 96 (201)
T COG1435 83 VDCVLIDEAQFFDE 96 (201)
T ss_pred cCEEEEehhHhCCH
Confidence 68999999999954
No 288
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=30.70 E-value=40 Score=26.46 Aligned_cols=26 Identities=12% Similarity=0.429 Sum_probs=23.0
Q ss_pred CcCcEEEEecCCCCCCHHHHHHHHHh
Q psy13032 99 SCRNRLLLSGTPIQNSMAELWALLHF 124 (190)
Q Consensus 99 ~~~~r~lLTgTP~~n~~~el~~ll~f 124 (190)
..+.++++|-+|+.+..+++|.|+.=
T Consensus 38 ~~~~~fI~tQ~P~~~t~~~FW~mv~~ 63 (231)
T cd00047 38 NPPKAYIATQGPLPNTVEDFWRMVWE 63 (231)
T ss_pred CCCcceEEcCCCChhhHHHHHHHHHh
Confidence 44678999999999999999999884
No 289
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=30.69 E-value=64 Score=30.56 Aligned_cols=18 Identities=22% Similarity=0.189 Sum_probs=14.7
Q ss_pred hccCccEEEEcccccccC
Q psy13032 57 NRIKWQYLILDEAQAIVD 74 (190)
Q Consensus 57 ~~~~w~~vIvDEaH~lkn 74 (190)
....+|++|||||+-+..
T Consensus 291 RG~~~DLLIVDEAAfI~~ 308 (752)
T PHA03333 291 RGQNPDLVIVDEAAFVNP 308 (752)
T ss_pred CCCCCCEEEEECcccCCH
Confidence 445689999999999964
No 290
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=30.63 E-value=42 Score=31.57 Aligned_cols=40 Identities=15% Similarity=0.237 Sum_probs=26.8
Q ss_pred cCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCC-cCcEEEEecCCCCC
Q psy13032 59 IKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFS-CRNRLLLSGTPIQN 113 (190)
Q Consensus 59 ~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~-~~~r~lLTgTP~~n 113 (190)
-.|+.|+|||.|-.-. .+ +..+..|. ....+++.|-|-|.
T Consensus 212 ~~~~~IlVDEfQDtn~------------~Q---~~ll~~L~~~~~~l~vVGD~dQs 252 (721)
T PRK11773 212 ERFTHILVDEFQDTNA------------IQ---YAWIRLLAGDTGKVMIVGDDDQS 252 (721)
T ss_pred HhCCEEEEEchhcCCH------------HH---HHHHHHHhCCCCeEEEEecCccc
Confidence 4789999999997633 33 33334432 34578999998773
No 291
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=30.57 E-value=69 Score=29.89 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=17.3
Q ss_pred HHhhccCccEEEEcccccccC
Q psy13032 54 KYFNRIKWQYLILDEAQAIVD 74 (190)
Q Consensus 54 ~~l~~~~w~~vIvDEaH~lkn 74 (190)
..++.-.+++++|||||-++-
T Consensus 293 NsiRGQ~fnll~VDEA~FI~~ 313 (668)
T PHA03372 293 NSIRGQNFHLLLVDEAHFIKK 313 (668)
T ss_pred ccccCCCCCEEEEehhhccCH
Confidence 345667899999999999975
No 292
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=30.55 E-value=1.6e+02 Score=26.00 Aligned_cols=59 Identities=12% Similarity=0.030 Sum_probs=37.9
Q ss_pred CccEEEEcccccccCcccccccchhhhhhh-HHHHHHhc--CCcCcEEEEecCCCCCCHHHHHHHHHhhCCC
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQS-MRWKLLLG--FSCRNRLLLSGTPIQNSMAELWALLHFIMPS 128 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s-~~~~~~~~--l~~~~r~lLTgTP~~n~~~el~~ll~fl~p~ 128 (190)
..|+||||.+-+..... ... .....+.. ......++|++|+-++.+.+.+..++.+.++
T Consensus 299 ~~DlVlIDt~G~~~~d~----------~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~~ 360 (424)
T PRK05703 299 DCDVILIDTAGRSQRDK----------RLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPLD 360 (424)
T ss_pred CCCEEEEeCCCCCCCCH----------HHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCCC
Confidence 58999999997654310 111 22222221 1234578899999888888888888876653
No 293
>PHA00350 putative assembly protein
Probab=30.35 E-value=25 Score=30.82 Aligned_cols=12 Identities=42% Similarity=0.612 Sum_probs=10.8
Q ss_pred EEEEcccccccC
Q psy13032 63 YLILDEAQAIVD 74 (190)
Q Consensus 63 ~vIvDEaH~lkn 74 (190)
+||+||||++=+
T Consensus 84 LIViDEaq~~~p 95 (399)
T PHA00350 84 LYVIDEAQMIFP 95 (399)
T ss_pred EEEEECchhhcC
Confidence 899999998866
No 294
>COG0853 PanD Aspartate 1-decarboxylase [Coenzyme metabolism]
Probab=30.18 E-value=35 Score=24.80 Aligned_cols=32 Identities=31% Similarity=0.413 Sum_probs=24.9
Q ss_pred EEEecHHHHHhcHHHhhccCccEEEEcccccccC
Q psy13032 41 VVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVD 74 (190)
Q Consensus 41 vvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn 74 (190)
|+|+||..+.. +........+|++||.-++..
T Consensus 84 VII~sy~~~~e--~e~~~~~Pkvv~~d~~N~i~~ 115 (126)
T COG0853 84 VIIMSYAQMSE--EEAKTHKPKVVVVDEKNEIVD 115 (126)
T ss_pred EEEEEcccCCH--HHHhccCCeEEEECCCCchhh
Confidence 77789997754 345677899999999877765
No 295
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=30.16 E-value=43 Score=26.85 Aligned_cols=25 Identities=8% Similarity=0.474 Sum_probs=22.6
Q ss_pred CcCcEEEEecCCCCCCHHHHHHHHH
Q psy13032 99 SCRNRLLLSGTPIQNSMAELWALLH 123 (190)
Q Consensus 99 ~~~~r~lLTgTP~~n~~~el~~ll~ 123 (190)
....++++|-+|+.+...|+|.|+.
T Consensus 66 ~~~~~fI~tQ~P~~~t~~dFW~mv~ 90 (258)
T smart00194 66 NGPKAYIATQGPLPSTVEDFWRMVW 90 (258)
T ss_pred CCccceEEeCCCchHHHHHHHHHHH
Confidence 4567899999999999999999988
No 296
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=30.06 E-value=2.3e+02 Score=24.89 Aligned_cols=15 Identities=20% Similarity=0.377 Sum_probs=13.0
Q ss_pred CccEEEEcccccccC
Q psy13032 60 KWQYLILDEAQAIVD 74 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn 74 (190)
..+++|+||.|.+.+
T Consensus 211 ~~dlLiiDDi~~l~~ 225 (450)
T PRK00149 211 SVDVLLIDDIQFLAG 225 (450)
T ss_pred cCCEEEEehhhhhcC
Confidence 578999999999865
No 297
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=30.03 E-value=43 Score=32.12 Aligned_cols=82 Identities=11% Similarity=0.155 Sum_probs=45.2
Q ss_pred CccEEEecHHHHHhcHHHhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcC--CcCcEEEEecCCCCCCH
Q psy13032 38 SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGF--SCRNRLLLSGTPIQNSM 115 (190)
Q Consensus 38 ~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l--~~~~r~lLTgTP~~n~~ 115 (190)
.++.+++..+.+.+....+.. .||+||+||+-.+-+.-. +.+=.........+..+ ++++.+++-||-- ...
T Consensus 121 ~~~rLivqIdSL~R~~~~~l~-~yDvVIIDEv~svL~qL~----S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln-~~t 194 (824)
T PF02399_consen 121 PYDRLIVQIDSLHRLDGSLLD-RYDVVIIDEVMSVLNQLF----SPTMRQREEVDNLLKELIRNAKTVIVMDADLN-DQT 194 (824)
T ss_pred ccCeEEEEehhhhhccccccc-ccCEEEEehHHHHHHHHh----HHHHhhHHHHHHHHHHHHHhCCeEEEecCCCC-HHH
Confidence 468888888888775433211 499999999954433110 00000122233334443 6788888888642 233
Q ss_pred HHHHHHHHhhCCC
Q psy13032 116 AELWALLHFIMPS 128 (190)
Q Consensus 116 ~el~~ll~fl~p~ 128 (190)
..++.-++|+
T Consensus 195 ---vdFl~~~Rp~ 204 (824)
T PF02399_consen 195 ---VDFLASCRPD 204 (824)
T ss_pred ---HHHHHHhCCC
Confidence 3345556664
No 298
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=29.99 E-value=48 Score=31.20 Aligned_cols=40 Identities=28% Similarity=0.311 Sum_probs=26.5
Q ss_pred cCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCC-cCcEEEEecCCCCC
Q psy13032 59 IKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFS-CRNRLLLSGTPIQN 113 (190)
Q Consensus 59 ~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~-~~~r~lLTgTP~~n 113 (190)
-.|+.|+|||.|-.-. .+ +..+..|. ....+++.|-|-|.
T Consensus 208 ~~~~~IlVDEfQDtn~------------~Q---~~ll~~L~~~~~~l~vVGD~~Qs 248 (726)
T TIGR01073 208 RKFQYIHVDEYQDTNR------------AQ---YTLVRLLASRFRNLCVVGDADQS 248 (726)
T ss_pred HhCCEEEEEccccCCH------------HH---HHHHHHHhCCCCEEEEEeCCCcc
Confidence 3799999999997633 22 33344442 23568888998874
No 299
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=29.99 E-value=87 Score=25.56 Aligned_cols=40 Identities=20% Similarity=0.214 Sum_probs=26.5
Q ss_pred cCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecC
Q psy13032 59 IKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGT 109 (190)
Q Consensus 59 ~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgT 109 (190)
.++.+||+|||..|... ......+.+..-....+++|+..
T Consensus 108 ~~~kviiidead~mt~~-----------A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 108 GGYKVVIIDEADKLTED-----------AANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCceEEEeCcHHHHhHH-----------HHHHHHHHhccCCCCeEEEEEcC
Confidence 46899999999998541 33344444444466777777663
No 300
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=29.70 E-value=72 Score=26.72 Aligned_cols=54 Identities=13% Similarity=0.043 Sum_probs=33.6
Q ss_pred cHHHHHhcHHHhh--c---cCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecC
Q psy13032 45 SYQLVVSDFKYFN--R---IKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGT 109 (190)
Q Consensus 45 sy~~~~~~~~~l~--~---~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgT 109 (190)
+.+.++...+.+. . -++.+||+|+++++... ......+.+........++|+.+
T Consensus 70 ~vd~Ir~l~~~~~~~~~~~~~~KvvII~~~e~m~~~-----------a~NaLLK~LEEPp~~t~~il~~~ 128 (299)
T PRK07132 70 SKSEFLSAINKLYFSSFVQSQKKILIIKNIEKTSNS-----------LLNALLKTIEEPPKDTYFLLTTK 128 (299)
T ss_pred CHHHHHHHHHHhccCCcccCCceEEEEecccccCHH-----------HHHHHHHHhhCCCCCeEEEEEeC
Confidence 3455555444331 2 37899999999999541 33456666666666666666554
No 301
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=29.51 E-value=65 Score=26.97 Aligned_cols=40 Identities=18% Similarity=0.152 Sum_probs=26.0
Q ss_pred cCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecC
Q psy13032 59 IKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGT 109 (190)
Q Consensus 59 ~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgT 109 (190)
-.+.++|+|+|++|... ......+.+..-.....++|..+
T Consensus 94 ~~~kv~ii~~ad~mt~~-----------AaNaLLK~LEEPp~~~~fiL~~~ 133 (290)
T PRK05917 94 SPYKIYIIHEADRMTLD-----------AISAFLKVLEDPPQHGVIILTSA 133 (290)
T ss_pred CCceEEEEechhhcCHH-----------HHHHHHHHhhcCCCCeEEEEEeC
Confidence 46789999999999641 44445555655555555555543
No 302
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=29.47 E-value=27 Score=32.95 Aligned_cols=32 Identities=22% Similarity=0.390 Sum_probs=21.5
Q ss_pred cEEEe--cHHHHHhcHHHhhc-cCccEEEEccccc
Q psy13032 40 HVVIT--SYQLVVSDFKYFNR-IKWQYLILDEAQA 71 (190)
Q Consensus 40 dvvit--sy~~~~~~~~~l~~-~~w~~vIvDEaH~ 71 (190)
-+||| ||+-+..+...+.+ +...++++||||-
T Consensus 300 ~vvit~pTYdGi~yd~~~I~~~~g~~~ilvDEAhg 334 (713)
T PRK15399 300 HAVITNSTYDGLLYNTDWIKQTLDVPSIHFDSAWV 334 (713)
T ss_pred EEEEECCCCCceeeCHHHHHHHhCCCEEEEeccch
Confidence 47776 77777666665533 3455677999983
No 303
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=29.20 E-value=30 Score=33.35 Aligned_cols=48 Identities=17% Similarity=0.167 Sum_probs=27.5
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhH-HHHHHhc----CCc-CcEEEEecCCCCCCHHHHHH
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSM-RWKLLLG----FSC-RNRLLLSGTPIQNSMAELWA 120 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~-~~~~~~~----l~~-~~r~lLTgTP~~n~~~el~~ 120 (190)
+.++||+||+|.= + -++- ....+.. .+. -..+++|+|-=..++.+++.
T Consensus 162 ~ys~vIiDEaHER-S------------l~tDilLgllk~~~~~rr~DLKiIimSATld~~rfs~~f~ 215 (845)
T COG1643 162 GYSVVIIDEAHER-S------------LNTDILLGLLKDLLARRRDDLKLIIMSATLDAERFSAYFG 215 (845)
T ss_pred cCCEEEEcchhhh-h------------HHHHHHHHHHHHHHhhcCCCceEEEEecccCHHHHHHHcC
Confidence 5799999999941 1 1111 2222222 232 24578999976556665544
No 304
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=29.12 E-value=67 Score=24.48 Aligned_cols=12 Identities=25% Similarity=0.443 Sum_probs=10.6
Q ss_pred cEEEEccccccc
Q psy13032 62 QYLILDEAQAIV 73 (190)
Q Consensus 62 ~~vIvDEaH~lk 73 (190)
-+||+||+|.+.
T Consensus 120 ~iiviDe~~~~~ 131 (234)
T PF01637_consen 120 VIIVIDEFQYLA 131 (234)
T ss_dssp EEEEEETGGGGG
T ss_pred EEEEEecHHHHh
Confidence 578899999998
No 305
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=28.75 E-value=57 Score=26.45 Aligned_cols=15 Identities=20% Similarity=0.321 Sum_probs=9.9
Q ss_pred CccEEEEcccccccC
Q psy13032 60 KWQYLILDEAQAIVD 74 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn 74 (190)
.=+++.+||.|++..
T Consensus 101 ~~~ILFIDEIHRlnk 115 (233)
T PF05496_consen 101 EGDILFIDEIHRLNK 115 (233)
T ss_dssp TT-EEEECTCCC--H
T ss_pred CCcEEEEechhhccH
Confidence 357899999999943
No 306
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=28.48 E-value=56 Score=25.57 Aligned_cols=72 Identities=14% Similarity=0.152 Sum_probs=36.4
Q ss_pred ccEEEecHHHHHhcHHHhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCc--CcEEEEecCCCCC--C
Q psy13032 39 FHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSC--RNRLLLSGTPIQN--S 114 (190)
Q Consensus 39 ~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~--~~r~lLTgTP~~n--~ 114 (190)
..++.++-..+....... ..-+++|+||+|.+... .....+..+..... ...+++|++.-.. .
T Consensus 71 ~~~~~i~~~~~~~~~~~~--~~~~~liiDdi~~l~~~-----------~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~ 137 (227)
T PRK08903 71 RNARYLDAASPLLAFDFD--PEAELYAVDDVERLDDA-----------QQIALFNLFNRVRAHGQGALLVAGPAAPLALP 137 (227)
T ss_pred CcEEEEehHHhHHHHhhc--ccCCEEEEeChhhcCch-----------HHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCC
Confidence 345555544443322221 24678999999988541 33334444444432 2346777764221 1
Q ss_pred -HHHHHHHHH
Q psy13032 115 -MAELWALLH 123 (190)
Q Consensus 115 -~~el~~ll~ 123 (190)
..+|.+-+.
T Consensus 138 l~~~L~sr~~ 147 (227)
T PRK08903 138 LREDLRTRLG 147 (227)
T ss_pred CCHHHHHHHh
Confidence 245555543
No 307
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=28.27 E-value=63 Score=27.29 Aligned_cols=26 Identities=15% Similarity=0.466 Sum_probs=23.1
Q ss_pred CCcCcEEEEecCCCCCCHHHHHHHHH
Q psy13032 98 FSCRNRLLLSGTPIQNSMAELWALLH 123 (190)
Q Consensus 98 l~~~~r~lLTgTP~~n~~~el~~ll~ 123 (190)
.....+.++|-.|+++...|+|.|+.
T Consensus 109 ~~~~~~fIaTQ~Pl~~T~~dFW~MIw 134 (323)
T PHA02746 109 FKEANKFICAQGPKEDTSEDFFKLIS 134 (323)
T ss_pred CCCCCeEEEeCCCChhhHHHHHHHHH
Confidence 44567899999999999999999988
No 308
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=27.98 E-value=52 Score=30.92 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=27.0
Q ss_pred cCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCC
Q psy13032 59 IKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQN 113 (190)
Q Consensus 59 ~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n 113 (190)
-.|+.|+|||.|-.-. .+-...+.+. .....+++.|-|-|.
T Consensus 207 ~~~~~ilVDEfQDtn~------------~Q~~ll~~L~--~~~~~l~vVGD~~Qs 247 (715)
T TIGR01075 207 ERFTHILVDEFQDTNK------------IQYAWIRLLA--GNTGNVMIVGDDDQS 247 (715)
T ss_pred HhCCEEEEEccccCCH------------HHHHHHHHHh--CCCCeEEEEeCCccc
Confidence 3689999999997633 3333333332 234578999999873
No 309
>PRK13435 response regulator; Provisional
Probab=27.93 E-value=2.1e+02 Score=19.93 Aligned_cols=56 Identities=16% Similarity=0.079 Sum_probs=31.6
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEE--EecHHHHHhcHHHhhccCccEEEEcccc
Q psy13032 5 VPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVV--ITSYQLVVSDFKYFNRIKWQYLILDEAQ 70 (190)
Q Consensus 5 ~p~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvv--itsy~~~~~~~~~l~~~~w~~vIvDEaH 70 (190)
.+..+++++.........+...+. ...+.++ ..+-+.. ...+.+..+|++|+|...
T Consensus 3 ~~~~~iliid~~~~~~~~l~~~l~-------~~~~~~~~~~~~~~~~---~~~~~~~~~dliivd~~~ 60 (145)
T PRK13435 3 LRQLKVLIVEDEALIALELEKLVE-------EAGHEVVGIAMSSEQA---IALGRRRQPDVALVDVHL 60 (145)
T ss_pred cccceEEEEcCcHHHHHHHHHHHH-------hcCCeEEEeeCCHHHH---HHHhhhcCCCEEEEeeec
Confidence 346788888887766665554321 1124443 2232222 233445579999999854
No 310
>PRK15029 arginine decarboxylase; Provisional
Probab=27.90 E-value=30 Score=32.94 Aligned_cols=30 Identities=30% Similarity=0.283 Sum_probs=20.2
Q ss_pred EEEe--cHHHHHhcHHHhhcc---CccEEEEcccc
Q psy13032 41 VVIT--SYQLVVSDFKYFNRI---KWQYLILDEAQ 70 (190)
Q Consensus 41 vvit--sy~~~~~~~~~l~~~---~w~~vIvDEaH 70 (190)
++|| ||+-+..+...+.++ .-..++|||||
T Consensus 316 vvlt~PTY~Gv~~di~~I~~~~h~~~~~llvDEAh 350 (755)
T PRK15029 316 CVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDEAW 350 (755)
T ss_pred EEEECCCCcceeeCHHHHHHHHHhcCCeEEEECcc
Confidence 6665 777666666555432 34579999999
No 311
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=27.81 E-value=1.3e+02 Score=28.72 Aligned_cols=88 Identities=19% Similarity=0.113 Sum_probs=44.0
Q ss_pred CeEEEEeCCH--HHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEcccccccCcccccccchhh
Q psy13032 8 FKVVPYWGSP--QERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYSYLNDIE 85 (190)
Q Consensus 8 l~v~~~~G~~--~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~ 85 (190)
.+|.++|+.- .+|..... ....++..|||=|-.-+-. .|. .-.+|||||=|--. ....+.-.
T Consensus 271 ~~v~vlHS~Ls~~er~~~W~-------~~~~G~~~vVIGtRSAlF~---Pf~--~LGLIIvDEEHD~s----YKq~~~pr 334 (730)
T COG1198 271 AKVAVLHSGLSPGERYRVWR-------RARRGEARVVIGTRSALFL---PFK--NLGLIIVDEEHDSS----YKQEDGPR 334 (730)
T ss_pred CChhhhcccCChHHHHHHHH-------HHhcCCceEEEEechhhcC---chh--hccEEEEecccccc----ccCCcCCC
Confidence 5677777643 33332221 1234788999988443321 222 45789999999421 11111111
Q ss_pred hhhhHHHHHHhcCCcCcEEEEecCCC
Q psy13032 86 REQSMRWKLLLGFSCRNRLLLSGTPI 111 (190)
Q Consensus 86 ~~~s~~~~~~~~l~~~~r~lLTgTP~ 111 (190)
.+.............--.++=|+||-
T Consensus 335 YhARdvA~~Ra~~~~~pvvLgSATPS 360 (730)
T COG1198 335 YHARDVAVLRAKKENAPVVLGSATPS 360 (730)
T ss_pred cCHHHHHHHHHHHhCCCEEEecCCCC
Confidence 12222222222223334688899995
No 312
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=27.36 E-value=68 Score=26.91 Aligned_cols=27 Identities=19% Similarity=0.586 Sum_probs=23.5
Q ss_pred cCCcCcEEEEecCCCCCCHHHHHHHHH
Q psy13032 97 GFSCRNRLLLSGTPIQNSMAELWALLH 123 (190)
Q Consensus 97 ~l~~~~r~lLTgTP~~n~~~el~~ll~ 123 (190)
....+.+++.|-.|+.+...|+|.|+.
T Consensus 88 g~~~~~~yIaTQ~Pl~~T~~dFW~MVw 114 (312)
T PHA02747 88 GFEDDKKFIATQGPFAETCADFWKAVW 114 (312)
T ss_pred CCCCCCeEEEeCCCcchhHHHHHHHHH
Confidence 345567899999999999999999987
No 313
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=27.09 E-value=1.9e+02 Score=18.98 Aligned_cols=89 Identities=11% Similarity=0.131 Sum_probs=43.5
Q ss_pred EEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEcccccccCcccccccchhhhhhhH
Q psy13032 11 VPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSM 90 (190)
Q Consensus 11 ~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~ 90 (190)
++....+..+..+...+. ...+. .+++......-...+.+..+|++|+|=. +.+. ..-.
T Consensus 2 livd~~~~~~~~l~~~l~-------~~~~~-~v~~~~~~~~~~~~~~~~~~d~iiid~~--~~~~-----------~~~~ 60 (112)
T PF00072_consen 2 LIVDDDPEIRELLEKLLE-------RAGYE-EVTTASSGEEALELLKKHPPDLIIIDLE--LPDG-----------DGLE 60 (112)
T ss_dssp EEEESSHHHHHHHHHHHH-------HTTEE-EEEEESSHHHHHHHHHHSTESEEEEESS--SSSS-----------BHHH
T ss_pred EEEECCHHHHHHHHHHHH-------hCCCC-EEEEECCHHHHHHHhcccCceEEEEEee--eccc-----------cccc
Confidence 444555555555544331 12220 3333333444445667778999999922 2110 2233
Q ss_pred HHHHHhcC-CcCcEEEEecCCCCCCHHHHHHHHH
Q psy13032 91 RWKLLLGF-SCRNRLLLSGTPIQNSMAELWALLH 123 (190)
Q Consensus 91 ~~~~~~~l-~~~~r~lLTgTP~~n~~~el~~ll~ 123 (190)
..+.++.. .....+++|+++- ..+....++
T Consensus 61 ~~~~i~~~~~~~~ii~~t~~~~---~~~~~~~~~ 91 (112)
T PF00072_consen 61 LLEQIRQINPSIPIIVVTDEDD---SDEVQEALR 91 (112)
T ss_dssp HHHHHHHHTTTSEEEEEESSTS---HHHHHHHHH
T ss_pred cccccccccccccEEEecCCCC---HHHHHHHHH
Confidence 33444443 3455677886543 444444443
No 314
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=26.94 E-value=72 Score=26.64 Aligned_cols=26 Identities=12% Similarity=0.594 Sum_probs=23.0
Q ss_pred CCcCcEEEEecCCCCCCHHHHHHHHH
Q psy13032 98 FSCRNRLLLSGTPIQNSMAELWALLH 123 (190)
Q Consensus 98 l~~~~r~lLTgTP~~n~~~el~~ll~ 123 (190)
...+.+++.|-.|+.+...|+|.|+.
T Consensus 89 ~~~~~~fIatQ~Pl~~T~~dFW~MVw 114 (303)
T PHA02742 89 HNAKGRFICTQAPLEETALDFWQAIF 114 (303)
T ss_pred CCCCCeEEEECCCCcccHHHHHHHHh
Confidence 34567899999999999999999987
No 315
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=25.71 E-value=57 Score=28.47 Aligned_cols=35 Identities=23% Similarity=0.194 Sum_probs=20.6
Q ss_pred cEEEecHHHHHhcHH-----Hhhc--cCc-cEEEEcccccccC
Q psy13032 40 HVVITSYQLVVSDFK-----YFNR--IKW-QYLILDEAQAIVD 74 (190)
Q Consensus 40 dvvitsy~~~~~~~~-----~l~~--~~w-~~vIvDEaH~lkn 74 (190)
.++|.+=+.++.+.+ .+.+ -.+ -+++|||||-+.-
T Consensus 172 ~~~IvtegVfSMdGdiApL~~l~~L~~ky~a~L~VDEAHa~Gv 214 (388)
T COG0156 172 RKLIVTEGVFSMDGDIAPLPELVELAEKYGALLYVDEAHAVGV 214 (388)
T ss_pred ceEEEEeccccCCCCcCCHHHHHHHHHHhCcEEEEEccccccc
Confidence 466666566655322 2211 123 4899999998865
No 316
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=25.51 E-value=1.4e+02 Score=22.79 Aligned_cols=14 Identities=29% Similarity=0.351 Sum_probs=12.5
Q ss_pred CccEEEEccccccc
Q psy13032 60 KWQYLILDEAQAIV 73 (190)
Q Consensus 60 ~w~~vIvDEaH~lk 73 (190)
..++|++||||-+.
T Consensus 76 ~~dvI~IDEaQFf~ 89 (176)
T PF00265_consen 76 DYDVIGIDEAQFFD 89 (176)
T ss_dssp TCSEEEESSGGGST
T ss_pred CCCEEEEechHhhH
Confidence 38999999999996
No 317
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=25.37 E-value=62 Score=27.03 Aligned_cols=27 Identities=7% Similarity=0.224 Sum_probs=23.6
Q ss_pred cCCcCcEEEEecCCCCCCHHHHHHHHH
Q psy13032 97 GFSCRNRLLLSGTPIQNSMAELWALLH 123 (190)
Q Consensus 97 ~l~~~~r~lLTgTP~~n~~~el~~ll~ 123 (190)
+...+.+.+.|-.|+.+...|+|.|+.
T Consensus 86 G~~~~~~fIaTQ~Pl~~T~~dFW~MVw 112 (298)
T PHA02740 86 GYDFEQKFICIINLCEDACDKFLQALS 112 (298)
T ss_pred CCCCCCcEEEecCCchhhHHHHHHHHH
Confidence 445677899999999999999999987
No 318
>PRK06893 DNA replication initiation factor; Validated
Probab=25.16 E-value=93 Score=24.61 Aligned_cols=55 Identities=18% Similarity=0.192 Sum_probs=30.1
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCc-C-cEEEEecCCCCCCH----HHHHHHHH
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSC-R-NRLLLSGTPIQNSM----AELWALLH 123 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~-~-~r~lLTgTP~~n~~----~el~~ll~ 123 (190)
..+++|+||.|.+.+... .....+..+..+.. . ..+++|++-.+..+ .+|.+-+.
T Consensus 91 ~~dlLilDDi~~~~~~~~---------~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~ 151 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEE---------WELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLT 151 (229)
T ss_pred cCCEEEEeChhhhcCChH---------HHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHh
Confidence 468999999999854110 12234444444432 2 34567775433322 46666554
No 319
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=25.02 E-value=24 Score=34.14 Aligned_cols=14 Identities=21% Similarity=0.235 Sum_probs=11.3
Q ss_pred ccEEEEcccccccC
Q psy13032 61 WQYLILDEAQAIVD 74 (190)
Q Consensus 61 w~~vIvDEaH~lkn 74 (190)
.-++|+||||.+..
T Consensus 734 ~~~~viDEaw~l~~ 747 (893)
T TIGR03744 734 PIVMVTDEGHIITT 747 (893)
T ss_pred eEEEEeehHhhhhc
Confidence 55799999998853
No 320
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=24.93 E-value=61 Score=30.31 Aligned_cols=40 Identities=30% Similarity=0.394 Sum_probs=26.9
Q ss_pred cCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCC-cCcEEEEecCCCCC
Q psy13032 59 IKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFS-CRNRLLLSGTPIQN 113 (190)
Q Consensus 59 ~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~-~~~r~lLTgTP~~n 113 (190)
-.|+.|+|||.|-.-. .+ +..+..+. ....+++.|=|-|.
T Consensus 206 ~~~~~ilVDE~QDtn~------------~Q---~~ll~~l~~~~~~l~~VGD~~Qs 246 (672)
T PRK10919 206 NKIRYLLVDEYQDTNT------------SQ---YELVKLLVGSRARFTVVGDDDQS 246 (672)
T ss_pred hcCCEEEEEchhcCCH------------HH---HHHHHHHHcCCCEEEEEcCCccc
Confidence 3699999999997633 33 34444442 34578888988774
No 321
>PHA00728 hypothetical protein
Probab=24.68 E-value=2.7e+02 Score=20.24 Aligned_cols=53 Identities=17% Similarity=0.287 Sum_probs=35.1
Q ss_pred hhhHHHHHHhcC--CcCcEEEEecCCCCCCHHHHHHHHHhhC-CCCCCCh-----HHHHHHHhhh
Q psy13032 87 EQSMRWKLLLGF--SCRNRLLLSGTPIQNSMAELWALLHFIM-PSMFDSH-----DEFNEWFSKD 143 (190)
Q Consensus 87 ~~s~~~~~~~~l--~~~~r~lLTgTP~~n~~~el~~ll~fl~-p~~~~~~-----~~F~~~~~~~ 143 (190)
+.|-..+++..+ +.+..+-|||.-+ .=+...+.|-+ |..||.. .+|......-
T Consensus 45 PYTVTNRaIsElV~PkDTMfYLsgnqi----sLILtAfEfarLP~YFgEePv~ELae~A~kLKHY 105 (151)
T PHA00728 45 PYTVTNRAISELVEPKDTMFYLSGNQI----SLILTAFEFARLPAYFGEEPVTELAEFAHKLKHY 105 (151)
T ss_pred CceehhHHHHHhcCCccceEEecCCch----hhHHHHHHHhhchhhhCCccHHHHHHHHHHHHHH
Confidence 888888888888 4456888999543 33445566665 7778764 5566555443
No 322
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=24.65 E-value=63 Score=24.96 Aligned_cols=28 Identities=7% Similarity=0.453 Sum_probs=22.7
Q ss_pred cCcEEEEecCCCCCCHHHHHHHHHhhCC
Q psy13032 100 CRNRLLLSGTPIQNSMAELWALLHFIMP 127 (190)
Q Consensus 100 ~~~r~lLTgTP~~n~~~el~~ll~fl~p 127 (190)
....+++|-+|..++..++|.|+.--..
T Consensus 40 ~~~~~I~~q~P~~~t~~~FW~mv~~~~~ 67 (235)
T PF00102_consen 40 NGKKFIVTQAPMPDTIEDFWQMVWEQKV 67 (235)
T ss_dssp STEEEEEEES-SGGGHHHHHHHHHHTTB
T ss_pred chhhheeecccccccccceehheeeccc
Confidence 4678999999999999999999884433
No 323
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=24.61 E-value=74 Score=26.73 Aligned_cols=13 Identities=31% Similarity=0.429 Sum_probs=10.8
Q ss_pred ccEEEEccccccc
Q psy13032 61 WQYLILDEAQAIV 73 (190)
Q Consensus 61 w~~vIvDEaH~lk 73 (190)
.-+||+||+|.+-
T Consensus 130 ~~vlvIDE~d~L~ 142 (365)
T TIGR02928 130 SLIIVLDEIDYLV 142 (365)
T ss_pred eEEEEECchhhhc
Confidence 4578899999995
No 324
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=24.25 E-value=2.5e+02 Score=23.35 Aligned_cols=15 Identities=20% Similarity=0.313 Sum_probs=12.7
Q ss_pred CccEEEEcccccccC
Q psy13032 60 KWQYLILDEAQAIVD 74 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn 74 (190)
..+++++||+|.+..
T Consensus 102 ~~~vl~IDEi~~l~~ 116 (328)
T PRK00080 102 EGDVLFIDEIHRLSP 116 (328)
T ss_pred cCCEEEEecHhhcch
Confidence 468999999999954
No 325
>PHA02738 hypothetical protein; Provisional
Probab=24.17 E-value=62 Score=27.29 Aligned_cols=27 Identities=15% Similarity=0.551 Sum_probs=23.4
Q ss_pred cCCcCcEEEEecCCCCCCHHHHHHHHH
Q psy13032 97 GFSCRNRLLLSGTPIQNSMAELWALLH 123 (190)
Q Consensus 97 ~l~~~~r~lLTgTP~~n~~~el~~ll~ 123 (190)
....+.++++|-.|+.+...|+|.|+.
T Consensus 85 g~~~~~kfI~TQ~Pl~~T~~dFW~MVw 111 (320)
T PHA02738 85 GFEYKKKFICGQAPTRQTCYDFYRMLW 111 (320)
T ss_pred CCCCCceeEEecCCChHHHHHHHHHHH
Confidence 345567899999999999999999987
No 326
>KOG0327|consensus
Probab=23.93 E-value=1.4e+02 Score=26.11 Aligned_cols=65 Identities=17% Similarity=0.202 Sum_probs=44.8
Q ss_pred CCccEEEecHHHHHh--cHHHhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcC-cEEEEecCCC
Q psy13032 37 ASFHVVITSYQLVVS--DFKYFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCR-NRLLLSGTPI 111 (190)
Q Consensus 37 ~~~dvvitsy~~~~~--~~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~-~r~lLTgTP~ 111 (190)
...+||+.|-+.+.- +...+..-...+.|+|||-.+.... -..+++.....++.+ ..+++|+|-.
T Consensus 144 ~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~g----------fkdqI~~if~~lp~~vQv~l~SAT~p 211 (397)
T KOG0327|consen 144 DKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRG----------FKDQIYDIFQELPSDVQVVLLSATMP 211 (397)
T ss_pred cCceeecCCchhHHHhhccccccccceeEEeecchHhhhccc----------hHHHHHHHHHHcCcchhheeecccCc
Confidence 456788877654432 1124555678899999999887644 777888888888544 5678888864
No 327
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=23.62 E-value=2.9e+02 Score=24.35 Aligned_cols=106 Identities=16% Similarity=0.175 Sum_probs=57.8
Q ss_pred eEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHh-cHH--------Hh-hccCccEEEEcccccccCcccc
Q psy13032 9 KVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVS-DFK--------YF-NRIKWQYLILDEAQAIVDINVY 78 (190)
Q Consensus 9 ~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~-~~~--------~l-~~~~w~~vIvDEaH~lkn~~~~ 78 (190)
.+++|.|.+-.+..+.+-|-+...... ...-|+-.+=+.+.. ... .| .....|++++|-.|.+.+...
T Consensus 115 plfi~G~~GlGKTHLl~Aign~~~~~~-~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y~~dlllIDDiq~l~gk~~- 192 (408)
T COG0593 115 PLFIYGGVGLGKTHLLQAIGNEALANG-PNARVVYLTSEDFTNDFVKALRDNEMEKFKEKYSLDLLLIDDIQFLAGKER- 192 (408)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHhhC-CCceEEeccHHHHHHHHHHHHHhhhHHHHHHhhccCeeeechHhHhcCChh-
Confidence 456666677777777776544333222 233344444333322 111 11 123689999999999977211
Q ss_pred cccchhhhhhhHHHHHHhcCC-cCcEEEEec--CCCCCC--HHHHHHHHHh
Q psy13032 79 SYLNDIEREQSMRWKLLLGFS-CRNRLLLSG--TPIQNS--MAELWALLHF 124 (190)
Q Consensus 79 ~~~~~~~~~~s~~~~~~~~l~-~~~r~lLTg--TP~~n~--~~el~~ll~f 124 (190)
.....+-....+. ....+++|+ +|-+-+ .++|.+=+.+
T Consensus 193 --------~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~ 235 (408)
T COG0593 193 --------TQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEW 235 (408)
T ss_pred --------HHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhc
Confidence 2444555555553 334888888 665433 3466665553
No 328
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=23.60 E-value=37 Score=32.09 Aligned_cols=32 Identities=22% Similarity=0.430 Sum_probs=21.3
Q ss_pred cEEEe--cHHHHHhcHHHhhc-cCccEEEEccccc
Q psy13032 40 HVVIT--SYQLVVSDFKYFNR-IKWQYLILDEAQA 71 (190)
Q Consensus 40 dvvit--sy~~~~~~~~~l~~-~~w~~vIvDEaH~ 71 (190)
-+||| ||+-+..+...+.+ ++-+.|++||||-
T Consensus 300 ~~vit~pTYdG~~yd~~~I~~~~~~~~ilvDEAwg 334 (714)
T PRK15400 300 HAVITNSTYDGLLYNTDFIKKTLDVKSIHFDSAWV 334 (714)
T ss_pred EEEEECCCCccEecCHHHHHHHhCCCCEEEEccch
Confidence 37776 77776666665532 3445689999983
No 329
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=23.50 E-value=80 Score=26.22 Aligned_cols=28 Identities=7% Similarity=0.176 Sum_probs=24.2
Q ss_pred ecHHHHHhcHHHhhccCccEEEEccccc
Q psy13032 44 TSYQLVVSDFKYFNRIKWQYLILDEAQA 71 (190)
Q Consensus 44 tsy~~~~~~~~~l~~~~w~~vIvDEaH~ 71 (190)
.|+++.+..+++-.+..|++++|||.=.
T Consensus 29 ~~t~~~k~yIDfAa~~G~eYvlvD~GW~ 56 (273)
T PF10566_consen 29 ATTETQKRYIDFAAEMGIEYVLVDAGWY 56 (273)
T ss_dssp SSHHHHHHHHHHHHHTT-SEEEEBTTCC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccccc
Confidence 4899999999999999999999999854
No 330
>KOG0923|consensus
Probab=23.12 E-value=59 Score=30.73 Aligned_cols=58 Identities=17% Similarity=0.280 Sum_probs=30.5
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcC---CcCcE-EEEecCCCCCCHHHHHHHHH-hhCCCC
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGF---SCRNR-LLLSGTPIQNSMAELWALLH-FIMPSM 129 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l---~~~~r-~lLTgTP~~n~~~el~~ll~-fl~p~~ 129 (190)
.+.+|||||||-= +. +.-..+..+..+ +..-+ ++.|+|-=..++.++|.-.- |..|+.
T Consensus 378 sYSViiiDEAHER-TL-----------~TDILfgLvKDIar~RpdLKllIsSAT~DAekFS~fFDdapIF~iPGR 440 (902)
T KOG0923|consen 378 SYSVIIVDEAHER-TL-----------HTDILFGLVKDIARFRPDLKLLISSATMDAEKFSAFFDDAPIFRIPGR 440 (902)
T ss_pred ceeEEEeehhhhh-hh-----------hhhHHHHHHHHHHhhCCcceEEeeccccCHHHHHHhccCCcEEeccCc
Confidence 4679999999942 21 233334444433 44444 56677765444544433222 444553
No 331
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=22.86 E-value=2.3e+02 Score=23.19 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=16.4
Q ss_pred cHHHhhccCccEEEEcccccccC
Q psy13032 52 DFKYFNRIKWQYLILDEAQAIVD 74 (190)
Q Consensus 52 ~~~~l~~~~w~~vIvDEaH~lkn 74 (190)
....+....++.||+||+-.+.+
T Consensus 89 ~~~~~~G~~~~~i~iDE~~~~~~ 111 (384)
T PF03237_consen 89 SGDNIRGFEYDLIIIDEAAKVPD 111 (384)
T ss_dssp SHHHHHTS--SEEEEESGGGSTT
T ss_pred ccccccccccceeeeeecccCch
Confidence 34566778899999999988765
No 332
>PRK06526 transposase; Provisional
Probab=22.52 E-value=1e+02 Score=25.02 Aligned_cols=15 Identities=33% Similarity=0.430 Sum_probs=12.8
Q ss_pred CccEEEEcccccccC
Q psy13032 60 KWQYLILDEAQAIVD 74 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn 74 (190)
.++++|+||.|.+..
T Consensus 159 ~~dlLIIDD~g~~~~ 173 (254)
T PRK06526 159 RYPLLIVDEVGYIPF 173 (254)
T ss_pred cCCEEEEcccccCCC
Confidence 579999999998754
No 333
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=22.13 E-value=1e+02 Score=25.39 Aligned_cols=39 Identities=13% Similarity=0.048 Sum_probs=24.6
Q ss_pred cCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEec
Q psy13032 59 IKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSG 108 (190)
Q Consensus 59 ~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTg 108 (190)
-++.++|+|+|++|... ......+.+.+-.....++|+.
T Consensus 88 g~~KViII~~ae~mt~~-----------AANALLKtLEEPP~~t~fILit 126 (263)
T PRK06581 88 SGYKVAIIYSAELMNLN-----------AANSCLKILEDAPKNSYIFLIT 126 (263)
T ss_pred CCcEEEEEechHHhCHH-----------HHHHHHHhhcCCCCCeEEEEEe
Confidence 37899999999999652 3334455555545555555433
No 334
>COG3727 Vsr DNA G:T-mismatch repair endonuclease [DNA replication, recombination, and repair]
Probab=21.80 E-value=58 Score=24.13 Aligned_cols=19 Identities=21% Similarity=0.515 Sum_probs=16.1
Q ss_pred HHHhhccCccEEEEccccc
Q psy13032 53 FKYFNRIKWQYLILDEAQA 71 (190)
Q Consensus 53 ~~~l~~~~w~~vIvDEaH~ 71 (190)
...|.+.+|.++||=|+.-
T Consensus 101 ~~~L~~~GwrvlvVWEC~~ 119 (150)
T COG3727 101 IKRLQQLGWRVLVVWECAL 119 (150)
T ss_pred HHHHHHcCCeEEEEEeeec
Confidence 4568889999999999975
No 335
>PTZ00293 thymidine kinase; Provisional
Probab=21.09 E-value=1.6e+02 Score=23.50 Aligned_cols=14 Identities=21% Similarity=0.427 Sum_probs=12.3
Q ss_pred CccEEEEccccccc
Q psy13032 60 KWQYLILDEAQAIV 73 (190)
Q Consensus 60 ~w~~vIvDEaH~lk 73 (190)
..|+|++||||-+.
T Consensus 77 ~~dvI~IDEaQFf~ 90 (211)
T PTZ00293 77 NYDVIAIDEGQFFP 90 (211)
T ss_pred CCCEEEEEchHhhH
Confidence 57999999999984
No 336
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=20.50 E-value=82 Score=22.47 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=21.1
Q ss_pred cEEEecHHHHHhcHHHhhccCccEEEEccc
Q psy13032 40 HVVITSYQLVVSDFKYFNRIKWQYLILDEA 69 (190)
Q Consensus 40 dvvitsy~~~~~~~~~l~~~~w~~vIvDEa 69 (190)
-|+|++|..+..+ ........+|++||-
T Consensus 83 ~vII~sy~~~~~~--e~~~~~P~vv~vd~~ 110 (111)
T cd06919 83 RVIIMAYALMDEE--EAEGHKPKVVLVDEK 110 (111)
T ss_pred EEEEEECccCCHH--HHhcCCCEEEEeCCC
Confidence 3777899977543 556778899999984
Done!