Query psy13032
Match_columns 190
No_of_seqs 182 out of 1299
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 17:41:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13032.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13032hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z3i_X Similar to RAD54-like; 99.9 6.8E-27 2.3E-31 211.2 6.4 171 1-185 133-334 (644)
2 3mwy_W Chromo domain-containin 99.9 4.2E-26 1.4E-30 210.4 9.8 172 1-185 305-494 (800)
3 1z63_A Helicase of the SNF2/RA 99.9 9.7E-25 3.3E-29 190.7 8.2 158 1-185 105-281 (500)
4 3dmq_A RNA polymerase-associat 99.7 2.1E-17 7.1E-22 155.2 5.4 123 3-142 221-348 (968)
5 1wp9_A ATP-dependent RNA helic 99.3 2.9E-12 9.9E-17 109.0 8.2 106 2-128 73-183 (494)
6 1rif_A DAR protein, DNA helica 98.9 1.2E-09 4.2E-14 88.4 5.5 75 37-127 203-278 (282)
7 3tbk_A RIG-I helicase domain; 98.8 4.1E-09 1.4E-13 91.7 4.6 100 7-127 80-198 (555)
8 2fwr_A DNA repair protein RAD2 98.7 2.2E-08 7.4E-13 86.4 8.2 62 38-114 171-232 (472)
9 2oca_A DAR protein, ATP-depend 98.7 2.6E-09 8.8E-14 93.1 1.9 77 37-129 203-280 (510)
10 4a2q_A RIG-I, retinoic acid in 98.7 6.2E-09 2.1E-13 95.8 4.3 94 2-114 317-421 (797)
11 4a2p_A RIG-I, retinoic acid in 98.7 5.5E-09 1.9E-13 91.2 3.5 107 3-128 77-201 (556)
12 2fz4_A DNA repair protein RAD2 98.7 3.1E-08 1E-12 78.7 6.7 62 38-114 171-232 (237)
13 4a2w_A RIG-I, retinoic acid in 98.7 5.4E-09 1.8E-13 98.0 2.4 94 3-115 318-422 (936)
14 2ykg_A Probable ATP-dependent 98.7 7.7E-09 2.6E-13 93.3 2.8 106 3-127 83-207 (696)
15 4gl2_A Interferon-induced heli 98.6 3.7E-08 1.3E-12 88.8 4.7 114 3-127 79-215 (699)
16 3h1t_A Type I site-specific re 98.6 3E-08 1E-12 88.1 4.1 75 37-122 273-353 (590)
17 2gxq_A Heat resistant RNA depe 98.5 1.1E-07 3.7E-12 72.9 5.5 96 3-118 94-192 (207)
18 1vec_A ATP-dependent RNA helic 98.4 7.1E-07 2.4E-11 68.2 8.0 88 5-111 98-188 (206)
19 2pl3_A Probable ATP-dependent 98.4 8E-07 2.7E-11 69.6 8.0 91 7-118 125-219 (236)
20 1t6n_A Probable ATP-dependent 98.4 5.9E-07 2E-11 69.5 6.6 96 5-118 109-207 (220)
21 1q0u_A Bstdead; DEAD protein, 98.2 2.1E-06 7.3E-11 66.5 6.8 72 37-119 125-199 (219)
22 1hv8_A Putative ATP-dependent 98.2 2.2E-06 7.4E-11 70.5 7.2 66 38-113 123-191 (367)
23 3ber_A Probable ATP-dependent 98.2 3.1E-06 1.1E-10 67.2 7.8 92 7-118 139-234 (249)
24 3b6e_A Interferon-induced heli 98.2 7.8E-07 2.7E-11 68.1 3.9 37 38-74 132-176 (216)
25 2oxc_A Probable ATP-dependent 98.2 2E-06 7E-11 67.2 6.4 87 6-111 120-209 (230)
26 3oiy_A Reverse gyrase helicase 98.2 1.7E-06 5.9E-11 73.1 5.7 60 7-73 91-152 (414)
27 1xti_A Probable ATP-dependent 98.2 3E-06 1E-10 70.5 6.9 92 5-113 103-197 (391)
28 1qde_A EIF4A, translation init 98.1 4.9E-06 1.7E-10 64.4 6.3 91 7-118 110-203 (224)
29 3eiq_A Eukaryotic initiation f 98.1 6.6E-06 2.3E-10 68.9 7.4 66 37-112 158-226 (414)
30 1wrb_A DJVLGB; RNA helicase, D 98.1 6.6E-06 2.2E-10 65.1 6.8 71 37-118 149-226 (253)
31 1fuu_A Yeast initiation factor 98.0 4.4E-06 1.5E-10 69.4 5.1 86 7-112 117-205 (394)
32 2z0m_A 337AA long hypothetical 98.0 9.6E-06 3.3E-10 65.9 6.9 86 7-112 84-172 (337)
33 2j0s_A ATP-dependent RNA helic 98.0 1.7E-05 5.9E-10 66.5 7.8 87 7-112 133-222 (410)
34 3bor_A Human initiation factor 98.0 1E-05 3.5E-10 63.5 6.0 71 37-118 148-221 (237)
35 1s2m_A Putative ATP-dependent 97.9 2.5E-05 8.6E-10 65.2 8.3 87 7-112 117-206 (400)
36 3iuy_A Probable ATP-dependent 97.9 1.2E-05 4.1E-10 62.5 5.6 92 6-117 120-214 (228)
37 2w00_A HSDR, R.ECOR124I; ATP-b 97.9 1.6E-05 5.6E-10 75.2 7.3 63 37-113 374-441 (1038)
38 1gm5_A RECG; helicase, replica 97.9 4.6E-06 1.6E-10 76.8 3.1 86 7-116 445-532 (780)
39 1oyw_A RECQ helicase, ATP-depe 97.8 3.1E-05 1E-09 68.1 6.8 86 37-127 114-201 (523)
40 2eyq_A TRCF, transcription-rep 97.8 3.3E-05 1.1E-09 73.9 7.4 86 7-117 680-768 (1151)
41 3ly5_A ATP-dependent RNA helic 97.8 3.7E-05 1.3E-09 61.4 6.6 70 38-118 176-249 (262)
42 2i4i_A ATP-dependent RNA helic 97.8 5.1E-05 1.8E-09 63.6 7.6 86 7-111 129-221 (417)
43 3fe2_A Probable ATP-dependent 97.8 3.9E-05 1.3E-09 60.3 6.3 70 38-118 152-224 (242)
44 2db3_A ATP-dependent RNA helic 97.8 5.4E-05 1.8E-09 64.7 7.2 65 37-111 178-247 (434)
45 3dkp_A Probable ATP-dependent 97.8 5.1E-05 1.7E-09 59.5 6.6 74 36-117 147-226 (245)
46 3fht_A ATP-dependent RNA helic 97.7 2.8E-05 9.5E-10 65.0 5.0 67 37-112 142-212 (412)
47 2v1x_A ATP-dependent DNA helic 97.6 8.7E-05 3E-09 66.2 6.5 84 35-123 133-223 (591)
48 3pey_A ATP-dependent RNA helic 97.5 6.6E-05 2.3E-09 62.1 4.3 66 37-111 120-188 (395)
49 3fmo_B ATP-dependent RNA helic 97.5 8.4E-05 2.9E-09 60.7 4.3 67 37-112 209-279 (300)
50 3fho_A ATP-dependent RNA helic 97.5 9.6E-05 3.3E-09 64.5 4.9 72 37-118 234-308 (508)
51 3fmp_B ATP-dependent RNA helic 97.4 0.00012 4.2E-09 62.9 5.2 67 37-112 209-279 (479)
52 2zj8_A DNA helicase, putative 97.4 9.2E-05 3.2E-09 67.2 4.1 89 7-119 95-186 (720)
53 3i5x_A ATP-dependent RNA helic 97.3 0.00018 6.2E-09 63.1 4.9 67 38-111 201-275 (563)
54 2p6r_A Afuhel308 helicase; pro 97.3 0.0005 1.7E-08 62.2 7.8 92 7-119 95-189 (702)
55 4ddu_A Reverse gyrase; topoiso 97.3 0.00034 1.2E-08 66.7 6.9 62 6-74 147-210 (1104)
56 3sqw_A ATP-dependent RNA helic 97.3 0.00025 8.6E-09 62.7 5.5 68 38-112 150-225 (579)
57 4a4z_A Antiviral helicase SKI2 97.3 0.0003 1E-08 66.4 6.3 92 4-123 105-199 (997)
58 3llm_A ATP-dependent RNA helic 97.0 0.00089 3E-08 52.3 5.7 68 37-114 154-222 (235)
59 2va8_A SSO2462, SKI2-type heli 97.0 0.0011 3.9E-08 59.9 6.8 71 38-120 121-193 (715)
60 2xgj_A ATP-dependent RNA helic 97.0 0.002 7E-08 60.8 8.5 74 37-122 167-243 (1010)
61 3l9o_A ATP-dependent RNA helic 96.7 0.0035 1.2E-07 59.8 7.7 75 37-123 265-342 (1108)
62 4f92_B U5 small nuclear ribonu 96.1 0.01 3.5E-07 59.0 7.2 54 7-74 1001-1060(1724)
63 1gku_B Reverse gyrase, TOP-RG; 95.9 0.0057 1.9E-07 58.1 4.3 34 39-74 156-189 (1054)
64 3o8b_A HCV NS3 protease/helica 95.7 0.01 3.5E-07 53.6 4.8 65 36-112 295-362 (666)
65 2jlq_A Serine protease subunit 95.6 0.014 4.7E-07 50.1 5.3 62 38-112 87-153 (451)
66 2v6i_A RNA helicase; membrane, 95.4 0.014 4.7E-07 49.8 4.4 62 39-112 71-136 (431)
67 4f92_B U5 small nuclear ribonu 95.1 0.021 7.2E-07 56.8 5.4 75 37-119 180-261 (1724)
68 2vl7_A XPD; helicase, unknown 94.9 0.013 4.3E-07 51.6 2.8 39 36-74 142-189 (540)
69 3crv_A XPD/RAD3 related DNA he 94.7 0.016 5.5E-07 50.9 3.0 41 37-78 147-190 (551)
70 1yks_A Genome polyprotein [con 94.6 0.034 1.2E-06 47.5 4.9 41 60-113 99-143 (440)
71 4a15_A XPD helicase, ATP-depen 94.1 0.024 8.3E-07 50.7 2.8 38 37-74 174-218 (620)
72 2wv9_A Flavivirin protease NS2 93.7 0.043 1.5E-06 49.6 3.7 42 60-113 332-376 (673)
73 2z83_A Helicase/nucleoside tri 93.6 0.057 1.9E-06 46.3 4.1 64 40-112 91-155 (459)
74 2whx_A Serine protease/ntpase/ 93.2 0.052 1.8E-06 48.5 3.4 64 39-113 255-321 (618)
75 2ipc_A Preprotein translocase 91.1 0.35 1.2E-05 45.3 6.1 81 7-123 148-240 (997)
76 3vkw_A Replicase large subunit 90.2 0.7 2.4E-05 39.7 6.9 39 60-113 234-272 (446)
77 2xau_A PRE-mRNA-splicing facto 89.9 0.49 1.7E-05 43.4 6.1 65 37-111 184-251 (773)
78 3e1s_A Exodeoxyribonuclease V, 89.5 0.39 1.3E-05 42.5 5.0 40 60-113 279-318 (574)
79 2orw_A Thymidine kinase; TMTK, 88.7 0.46 1.6E-05 35.5 4.2 14 60-73 76-89 (184)
80 2gk6_A Regulator of nonsense t 84.7 0.8 2.7E-05 40.8 4.2 59 37-113 318-376 (624)
81 1w36_D RECD, exodeoxyribonucle 84.5 1.1 3.7E-05 39.9 4.9 42 60-115 262-303 (608)
82 1nkt_A Preprotein translocase 84.1 1.3 4.4E-05 41.4 5.3 37 38-74 200-245 (922)
83 2o0j_A Terminase, DNA packagin 80.1 3.7 0.00013 34.4 6.3 59 52-125 265-326 (385)
84 4b3f_X DNA-binding protein smu 79.7 0.73 2.5E-05 41.1 2.0 58 38-112 342-401 (646)
85 2wjy_A Regulator of nonsense t 78.7 1.4 4.7E-05 40.6 3.5 58 38-113 495-552 (800)
86 3rc3_A ATP-dependent RNA helic 78.6 1.3 4.3E-05 40.1 3.2 55 39-109 224-280 (677)
87 2gno_A DNA polymerase III, gam 78.0 3 0.0001 33.6 5.0 90 8-108 18-119 (305)
88 3u61_B DNA polymerase accessor 77.9 4.3 0.00015 32.3 5.9 50 60-120 105-155 (324)
89 1g5t_A COB(I)alamin adenosyltr 77.8 3.2 0.00011 31.5 4.8 59 56-125 116-174 (196)
90 2xzl_A ATP-dependent helicase 77.4 1.4 4.7E-05 40.6 3.1 57 37-112 497-553 (802)
91 3upu_A ATP-dependent DNA helic 76.9 2.6 9.1E-05 35.7 4.6 39 60-112 128-166 (459)
92 2b8t_A Thymidine kinase; deoxy 76.0 7.2 0.00025 30.0 6.5 37 59-109 88-124 (223)
93 1xx6_A Thymidine kinase; NESG, 75.7 3.3 0.00011 31.0 4.4 51 60-125 81-138 (191)
94 1tf5_A Preprotein translocase 75.2 1.6 5.3E-05 40.5 2.8 36 38-73 172-216 (844)
95 2fsf_A Preprotein translocase 75.0 1.6 5.5E-05 40.4 2.8 37 38-74 163-208 (853)
96 2j9r_A Thymidine kinase; TK1, 74.0 3.6 0.00012 31.7 4.2 35 60-109 101-136 (214)
97 2r2a_A Uncharacterized protein 72.7 1.4 4.9E-05 33.3 1.7 13 61-73 88-100 (199)
98 1a5t_A Delta prime, HOLB; zinc 71.4 6.3 0.00022 31.8 5.4 38 60-108 108-145 (334)
99 3cpe_A Terminase, DNA packagin 69.6 6.4 0.00022 34.6 5.4 49 52-113 265-316 (592)
100 2orv_A Thymidine kinase; TP4A 63.1 5.3 0.00018 31.2 3.1 14 60-73 90-103 (234)
101 1sxj_D Activator 1 41 kDa subu 57.8 9.6 0.00033 30.3 4.0 43 60-113 133-175 (353)
102 1sxj_E Activator 1 40 kDa subu 57.4 10 0.00034 30.3 4.0 43 60-113 134-176 (354)
103 1sxj_B Activator 1 37 kDa subu 57.4 9.5 0.00033 29.8 3.8 41 61-112 108-148 (323)
104 2b4a_A BH3024; flavodoxin-like 56.6 40 0.0014 22.2 7.0 57 4-69 12-69 (138)
105 1jr3_A DNA polymerase III subu 56.3 9.7 0.00033 30.5 3.8 40 60-110 119-158 (373)
106 2rjn_A Response regulator rece 56.3 43 0.0015 22.6 7.4 54 7-69 7-60 (154)
107 3eod_A Protein HNR; response r 56.1 39 0.0013 22.0 6.8 55 6-69 6-60 (130)
108 1iqp_A RFCS; clamp loader, ext 55.8 11 0.00037 29.5 3.9 42 60-112 110-151 (327)
109 4e7p_A Response regulator; DNA 55.5 44 0.0015 22.5 8.1 56 7-69 20-75 (150)
110 1w4r_A Thymidine kinase; type 55.2 12 0.0004 28.3 3.8 14 60-73 91-104 (195)
111 2chg_A Replication factor C sm 53.7 11 0.00037 27.2 3.4 42 60-112 102-143 (226)
112 1njg_A DNA polymerase III subu 52.2 13 0.00046 27.1 3.7 39 61-110 127-165 (250)
113 3h5i_A Response regulator/sens 52.0 44 0.0015 22.2 6.2 87 7-114 5-92 (140)
114 3hv2_A Response regulator/HD d 51.1 54 0.0018 22.1 8.2 54 7-69 14-67 (153)
115 3f6c_A Positive transcription 51.0 48 0.0017 21.6 6.9 87 8-117 2-91 (134)
116 3hdg_A Uncharacterized protein 50.4 41 0.0014 22.1 5.8 53 7-69 7-60 (137)
117 1qkk_A DCTD, C4-dicarboxylate 50.2 46 0.0016 22.5 6.2 54 7-69 3-56 (155)
118 2qr3_A Two-component system re 50.1 51 0.0017 21.6 7.3 54 7-69 3-56 (140)
119 3cg4_A Response regulator rece 49.6 53 0.0018 21.6 6.9 55 7-70 7-61 (142)
120 3grc_A Sensor protein, kinase; 49.5 53 0.0018 21.6 6.3 54 7-69 6-59 (140)
121 3gt7_A Sensor protein; structu 47.7 23 0.00079 24.3 4.2 54 7-69 7-60 (154)
122 1jr3_D DNA polymerase III, del 47.6 21 0.00073 28.5 4.5 39 60-109 76-115 (343)
123 2zay_A Response regulator rece 47.1 51 0.0017 21.9 5.9 82 7-110 8-92 (147)
124 1c4o_A DNA nucleotide excision 46.8 6.8 0.00023 35.1 1.4 13 62-74 327-339 (664)
125 3c01_A Surface presentation of 46.6 17 0.00059 21.0 2.7 19 27-45 30-48 (48)
126 3e2i_A Thymidine kinase; Zn-bi 46.5 23 0.00078 27.3 4.2 15 60-74 101-115 (219)
127 2qxy_A Response regulator; reg 46.3 61 0.0021 21.3 6.8 53 7-68 4-56 (142)
128 1sxj_C Activator 1 40 kDa subu 45.6 16 0.00055 29.2 3.5 40 60-110 110-149 (340)
129 3i42_A Response regulator rece 45.0 60 0.002 20.9 7.4 86 7-114 3-91 (127)
130 3syl_A Protein CBBX; photosynt 44.9 28 0.00095 27.0 4.7 54 56-111 126-179 (309)
131 3lte_A Response regulator; str 44.2 19 0.00063 23.7 3.1 54 7-69 6-59 (132)
132 3cnb_A DNA-binding response re 43.7 61 0.0021 21.2 5.9 55 7-70 8-64 (143)
133 2chq_A Replication factor C sm 43.5 7.5 0.00026 30.4 1.1 15 60-74 102-116 (319)
134 2qen_A Walker-type ATPase; unk 43.0 18 0.00061 28.4 3.3 14 61-74 129-142 (350)
135 2p65_A Hypothetical protein PF 42.7 15 0.0005 25.8 2.5 14 60-73 115-128 (187)
136 3bzy_A ESCU; auto cleavage pro 42.4 22 0.00074 21.1 2.7 19 27-45 36-54 (54)
137 2j48_A Two-component sensor ki 42.3 60 0.002 20.1 6.5 84 8-113 2-88 (119)
138 2z4s_A Chromosomal replication 42.0 48 0.0017 27.8 6.0 41 60-109 194-235 (440)
139 1k68_A Phytochrome response re 40.8 72 0.0025 20.6 7.8 57 7-70 2-65 (140)
140 3eul_A Possible nitrate/nitrit 40.8 79 0.0027 21.1 8.5 57 6-69 14-70 (152)
141 3m6m_D Sensory/regulatory prot 39.7 29 0.001 23.4 3.7 54 7-69 14-67 (143)
142 3lfu_A DNA helicase II; SF1 he 39.5 14 0.00048 32.3 2.3 40 60-113 213-252 (647)
143 3hzh_A Chemotaxis response reg 39.3 86 0.003 21.2 6.2 52 8-69 37-92 (157)
144 1l8q_A Chromosomal replication 38.8 19 0.00064 28.5 2.8 54 61-123 99-157 (324)
145 2d7d_A Uvrabc system protein B 38.4 10 0.00034 34.0 1.2 11 63-73 334-344 (661)
146 2qzj_A Two-component response 38.1 37 0.0013 22.5 4.0 82 7-110 4-85 (136)
147 3kto_A Response regulator rece 38.1 83 0.0028 20.6 6.0 54 7-69 6-59 (136)
148 3bos_A Putative DNA replicatio 37.8 19 0.00066 26.4 2.6 54 60-122 104-163 (242)
149 2fna_A Conserved hypothetical 37.5 22 0.00076 27.9 3.1 14 61-74 138-151 (357)
150 3cg0_A Response regulator rece 36.9 86 0.0029 20.4 6.2 54 7-70 9-64 (140)
151 2rdm_A Response regulator rece 36.5 84 0.0029 20.2 7.2 54 7-69 5-59 (132)
152 3cz5_A Two-component response 35.8 97 0.0033 20.7 9.2 55 7-70 5-61 (153)
153 4ag6_A VIRB4 ATPase, type IV s 35.5 23 0.00078 29.0 2.9 15 60-74 262-276 (392)
154 2qby_B CDC6 homolog 3, cell di 34.5 40 0.0014 26.9 4.2 38 63-111 136-174 (384)
155 3n70_A Transport activator; si 34.2 35 0.0012 23.5 3.3 40 60-110 76-115 (145)
156 3lua_A Response regulator rece 33.1 30 0.001 23.0 2.8 55 7-69 4-59 (140)
157 1p15_A Protein-tyrosine phosph 32.8 31 0.001 26.7 3.1 25 99-123 49-73 (253)
158 3n53_A Response regulator rece 32.5 54 0.0019 21.6 4.1 53 7-69 3-55 (140)
159 2zpa_A Uncharacterized protein 32.4 34 0.0012 30.8 3.6 13 60-72 255-267 (671)
160 3c97_A Signal transduction his 32.2 66 0.0023 21.2 4.5 53 8-69 11-63 (140)
161 3jte_A Response regulator rece 31.4 1.1E+02 0.0038 20.0 6.9 53 7-69 3-58 (143)
162 3kht_A Response regulator; PSI 30.5 1.2E+02 0.004 20.0 9.2 56 7-69 5-60 (144)
163 2hc1_A Receptor-type tyrosine- 30.4 37 0.0013 26.9 3.2 25 99-123 88-112 (291)
164 1p6q_A CHEY2; chemotaxis, sign 30.1 54 0.0018 21.1 3.7 54 7-69 6-60 (129)
165 2kjq_A DNAA-related protein; s 29.9 42 0.0014 23.5 3.2 39 60-109 83-123 (149)
166 3t6k_A Response regulator rece 29.7 49 0.0017 21.9 3.4 54 7-69 4-57 (136)
167 3rqi_A Response regulator prot 29.4 48 0.0016 23.5 3.5 54 7-69 7-60 (184)
168 3gl9_A Response regulator; bet 29.3 49 0.0017 21.4 3.3 53 8-69 3-55 (122)
169 2cm2_A Tyrosine-protein phosph 29.2 44 0.0015 26.6 3.5 24 100-123 83-106 (304)
170 1dbw_A Transcriptional regulat 29.2 1.1E+02 0.0039 19.4 7.5 54 7-69 3-56 (126)
171 2ooq_A Receptor-type tyrosine- 29.2 37 0.0013 26.8 3.1 25 99-123 87-111 (286)
172 3t8y_A CHEB, chemotaxis respon 28.6 76 0.0026 21.8 4.4 56 7-69 25-80 (164)
173 4b4t_J 26S protease regulatory 28.5 1.4E+02 0.0046 25.1 6.5 69 58-131 239-311 (405)
174 3q9s_A DNA-binding response re 28.3 1.8E+02 0.0063 21.6 7.3 81 8-110 38-118 (249)
175 3eqz_A Response regulator; str 28.0 1.2E+02 0.0041 19.4 5.2 52 7-69 3-55 (135)
176 3kyj_B CHEY6 protein, putative 27.3 1.2E+02 0.004 20.0 5.1 84 7-112 13-99 (145)
177 2pl1_A Transcriptional regulat 27.2 1.2E+02 0.004 19.0 7.3 52 9-69 2-53 (121)
178 2v1u_A Cell division control p 27.2 39 0.0013 26.8 2.9 14 61-74 131-144 (387)
179 1xwi_A SKD1 protein; VPS4B, AA 26.8 1.3E+02 0.0043 23.8 5.9 18 57-74 102-119 (322)
180 2bjv_A PSP operon transcriptio 26.7 47 0.0016 25.2 3.2 41 60-111 100-151 (265)
181 3a10_A Response regulator; pho 26.5 1.2E+02 0.0041 18.9 6.8 52 9-69 3-54 (116)
182 1rxd_A Protein tyrosine phosph 26.4 42 0.0014 23.1 2.6 23 101-123 15-37 (159)
183 1xhf_A DYE resistance, aerobic 26.3 89 0.003 19.8 4.2 54 7-69 3-56 (123)
184 1ofh_A ATP-dependent HSL prote 26.1 67 0.0023 24.6 4.0 15 60-74 116-130 (310)
185 3b7o_A Tyrosine-protein phosph 25.9 41 0.0014 27.0 2.8 24 100-123 110-133 (316)
186 3r0j_A Possible two component 25.7 2E+02 0.0069 21.2 7.0 54 7-69 23-76 (250)
187 3snk_A Response regulator CHEY 25.3 34 0.0012 22.6 1.9 55 7-69 14-68 (135)
188 1ys7_A Transcriptional regulat 25.2 1.9E+02 0.0066 20.7 7.4 84 7-112 7-91 (233)
189 2gkg_A Response regulator homo 25.2 42 0.0014 21.4 2.3 53 8-69 6-58 (127)
190 2qsj_A DNA-binding response re 24.9 1.4E+02 0.0047 19.8 5.2 56 7-69 3-59 (154)
191 3c3m_A Response regulator rece 24.7 60 0.0021 21.4 3.1 53 8-69 4-56 (138)
192 2gjt_A Receptor-type tyrosine- 24.7 40 0.0014 26.7 2.4 25 99-123 89-113 (295)
193 3hdv_A Response regulator; PSI 24.5 1.5E+02 0.005 19.1 6.2 54 6-69 6-61 (136)
194 2b49_A Protein tyrosine phosph 24.5 54 0.0019 25.8 3.2 22 102-123 86-107 (287)
195 1l8k_A T-cell protein-tyrosine 24.5 52 0.0018 26.4 3.1 24 100-123 79-102 (314)
196 3eie_A Vacuolar protein sortin 24.2 1E+02 0.0035 24.2 4.9 16 59-74 109-124 (322)
197 3euj_A Chromosome partition pr 24.1 33 0.0011 29.5 1.9 13 60-72 414-426 (483)
198 2oc3_A Tyrosine-protein phosph 23.9 44 0.0015 26.6 2.6 24 100-123 101-124 (303)
199 1kgs_A DRRD, DNA binding respo 23.8 2E+02 0.0069 20.5 7.3 81 8-110 3-84 (225)
200 1g8p_A Magnesium-chelatase 38 23.6 35 0.0012 26.9 2.0 14 61-74 145-158 (350)
201 3mm4_A Histidine kinase homolo 23.3 59 0.002 23.6 3.1 21 7-27 61-81 (206)
202 3uk6_A RUVB-like 2; hexameric 23.3 92 0.0031 24.7 4.5 13 62-74 191-203 (368)
203 1fpr_A Protein-tyrosine phosph 23.3 43 0.0015 26.3 2.3 23 101-123 76-98 (284)
204 3ilh_A Two component response 23.1 1.6E+02 0.0054 19.1 6.9 56 7-69 9-69 (146)
205 1i3c_A Response regulator RCP1 23.1 1.5E+02 0.005 19.7 5.0 56 7-69 8-70 (149)
206 2h4v_A Receptor-type tyrosine- 23.1 44 0.0015 26.9 2.4 25 99-123 109-133 (320)
207 4grz_A Tyrosine-protein phosph 22.8 49 0.0017 26.0 2.6 23 101-123 78-100 (288)
208 2qvg_A Two component response 22.7 1E+02 0.0035 20.1 4.0 55 7-69 7-68 (143)
209 1uaa_A REP helicase, protein ( 22.3 53 0.0018 29.0 3.0 40 59-113 206-246 (673)
210 2qv0_A Protein MRKE; structura 22.2 1.7E+02 0.0057 19.0 8.6 83 7-109 9-92 (143)
211 2bzl_A Tyrosine-protein phosph 22.2 63 0.0021 26.0 3.2 22 102-123 115-136 (325)
212 3h4m_A Proteasome-activating n 22.2 1.8E+02 0.0063 21.9 5.9 17 57-73 107-123 (285)
213 2p6x_A Tyrosine-protein phosph 22.0 47 0.0016 26.6 2.4 24 100-123 95-118 (309)
214 3b1s_A Flagellar biosynthetic 27.0 20 0.00067 21.1 0.0 16 30-45 37-52 (52)
215 3b0z_A Flagellar biosynthetic 27.0 20 0.00067 21.1 0.0 16 30-45 37-52 (52)
216 3f6p_A Transcriptional regulat 21.4 1.6E+02 0.0056 18.5 7.2 53 8-69 3-55 (120)
217 1jbe_A Chemotaxis protein CHEY 21.3 1.6E+02 0.0056 18.6 6.7 54 7-69 4-58 (128)
218 3s3e_A Tyrosine-protein phosph 21.1 49 0.0017 26.5 2.3 25 99-123 110-134 (307)
219 4i8n_A Tyrosine-protein phosph 21.1 75 0.0026 25.9 3.5 24 100-123 111-134 (354)
220 1yfo_A D1, receptor protein ty 21.0 52 0.0018 26.2 2.4 24 100-123 96-119 (302)
221 3s4o_A Protein tyrosine phosph 20.8 61 0.0021 22.4 2.6 22 102-123 23-44 (167)
222 2c9o_A RUVB-like 1; hexameric 20.8 74 0.0025 26.6 3.5 12 62-73 297-308 (456)
223 3i36_A Vascular protein tyrosi 20.6 50 0.0017 26.8 2.3 25 99-123 109-133 (342)
224 4ge6_A Tyrosine-protein phosph 20.4 53 0.0018 26.3 2.4 25 99-123 92-116 (314)
225 1vc3_B L-aspartate-alpha-decar 20.3 27 0.00091 23.3 0.5 31 41-73 61-91 (96)
226 1mb3_A Cell division response 20.3 69 0.0024 20.3 2.6 87 9-117 3-92 (124)
No 1
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.93 E-value=6.8e-27 Score=211.23 Aligned_cols=171 Identities=20% Similarity=0.288 Sum_probs=131.3
Q ss_pred CCccCCC-CeEEEEe-CCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEcccccccCcccc
Q psy13032 1 MERFVPD-FKVVPYW-GSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVY 78 (190)
Q Consensus 1 i~k~~p~-l~v~~~~-G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~ 78 (190)
|++|+|. +.++.++ |+...+......+... ......++|+||||++++.+.+.+....|++||+||||++||
T Consensus 133 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~vI~DEaH~ikn---- 206 (644)
T 1z3i_X 133 VGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQ--QGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKN---- 206 (644)
T ss_dssp HHHHHGGGCCEEEECSSCHHHHHHHHHHHHCC--CSSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGGCCT----
T ss_pred HHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHh--cCCCCCCcEEEeeHHHHHhhHHHhhcCCccEEEEECceecCC----
Confidence 3578774 6666555 4554443333222111 111246899999999999988888889999999999999999
Q ss_pred cccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCCHHHHHHHHHhhCCCCCCChHHHHHHHhhhhhhhhhccCccchh-
Q psy13032 79 SYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDER- 157 (190)
Q Consensus 79 ~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~~~el~~ll~fl~p~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~- 157 (190)
..++.++++..+++.+||+|||||++|++.|||++++|+.|+.|++...|.++|..|+..+........+.
T Consensus 207 --------~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~ 278 (644)
T 1z3i_X 207 --------SDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRA 278 (644)
T ss_dssp --------TCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHH
T ss_pred --------hhhHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999998776544332211
Q ss_pred ----------------------------hhhhHHHhhcccCCHHHhHHHHHHHHhh
Q psy13032 158 ----------------------------EYPIVLMLIYSAHNKAEKSLYSSSRRAS 185 (190)
Q Consensus 158 ----------------------------~~~~l~~~l~~~~~~~e~~ly~~~~~~~ 185 (190)
++++...++.+.+++.|+++|+.+.+..
T Consensus 279 ~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~ 334 (644)
T 1z3i_X 279 AGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQA 334 (644)
T ss_dssp HHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHH
Confidence 1222223345578999999999987654
No 2
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.93 E-value=4.2e-26 Score=210.41 Aligned_cols=172 Identities=24% Similarity=0.449 Sum_probs=128.2
Q ss_pred CCccCCCCeEEEEeCCHHHHHHHHHHhhhh---cccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEcccccccCccc
Q psy13032 1 MERFVPDFKVVPYWGSPQERKILRQFWDMK---NLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINV 77 (190)
Q Consensus 1 i~k~~p~l~v~~~~G~~~~r~~~~~~~~~~---~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~ 77 (190)
|++|+|++++++|+|+...+..+....... .......++||+||||+++.++...+....|++||+||||++||
T Consensus 305 ~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn--- 381 (800)
T 3mwy_W 305 FEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKN--- 381 (800)
T ss_dssp HHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCC---
T ss_pred HHHHCCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhhhcC---
Confidence 468999999999999998887766542111 01134578999999999999999999999999999999999999
Q ss_pred ccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCCHHHHHHHHHhhCCCCCCChHHHHHHHhh---------------
Q psy13032 78 YSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSK--------------- 142 (190)
Q Consensus 78 ~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~~~el~~ll~fl~p~~~~~~~~F~~~~~~--------------- 142 (190)
..++.++++..+++.+||+|||||++|++.|||++++||.|+.|+....|......
T Consensus 382 ---------~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~ 452 (800)
T 3mwy_W 382 ---------AESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQ 452 (800)
T ss_dssp ---------SSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTG
T ss_pred ---------chhHHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999876555321111
Q ss_pred hhhhhhhccCccchhhhhhHHHhhcccCCHHHhHHHHHHHHhh
Q psy13032 143 DIESHAENKTSIDEREYPIVLMLIYSAHNKAEKSLYSSSRRAS 185 (190)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~e~~ly~~~~~~~ 185 (190)
|+.- +..+......++++...++...+++.|+++|..+....
T Consensus 453 p~~l-RR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~ 494 (800)
T 3mwy_W 453 PFIL-RRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKN 494 (800)
T ss_dssp GGEE-ECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHC
T ss_pred HHHh-hhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 1000 00111222234455555677899999999999987764
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.91 E-value=9.7e-25 Score=190.66 Aligned_cols=158 Identities=22% Similarity=0.513 Sum_probs=126.8
Q ss_pred CCccCCCCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEcccccccCcccccc
Q psy13032 1 MERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYSY 80 (190)
Q Consensus 1 i~k~~p~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~~~ 80 (190)
|++|+|++++.+|+|.... .....+||+||||+++.++.. +....|++||+||||+++|
T Consensus 105 ~~~~~~~~~v~~~~g~~~~--------------~~~~~~~ivi~t~~~l~~~~~-l~~~~~~~vIvDEaH~~kn------ 163 (500)
T 1z63_A 105 LSKFAPHLRFAVFHEDRSK--------------IKLEDYDIILTTYAVLLRDTR-LKEVEWKYIVIDEAQNIKN------ 163 (500)
T ss_dssp HHHHCTTSCEEECSSSTTS--------------CCGGGSSEEEEEHHHHTTCHH-HHTCCEEEEEEETGGGGSC------
T ss_pred HHHHCCCceEEEEecCchh--------------ccccCCcEEEeeHHHHhccch-hcCCCcCEEEEeCccccCC------
Confidence 4679999999999998621 123568999999999998866 6778999999999999999
Q ss_pred cchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCCHHHHHHHHHhhCCCCCCChHHHHHHHhhhhhhhhhccCc-------
Q psy13032 81 LNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIESHAENKTS------- 153 (190)
Q Consensus 81 ~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~~~el~~ll~fl~p~~~~~~~~F~~~~~~~~~~~~~~~~~------- 153 (190)
..++.++++..+.+.++|+|||||++|++.|||++++|++|+.+++...|.+.|..|+..+......
T Consensus 164 ------~~~~~~~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~ 237 (500)
T 1z63_A 164 ------PQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIIS 237 (500)
T ss_dssp ------TTSHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHT
T ss_pred ------HhHHHHHHHHhhccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHh
Confidence 8899999999999999999999999999999999999999999999999999999887654321000
Q ss_pred ------------cchhhhhhHHHhhcccCCHHHhHHHHHHHHhh
Q psy13032 154 ------------IDEREYPIVLMLIYSAHNKAEKSLYSSSRRAS 185 (190)
Q Consensus 154 ------------~~~~~~~~l~~~l~~~~~~~e~~ly~~~~~~~ 185 (190)
....+++.....+...+++.|+++|+.+....
T Consensus 238 ~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~ 281 (500)
T 1z63_A 238 PFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENL 281 (500)
T ss_dssp TTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHH
T ss_pred hHeeeecccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHH
Confidence 00112223333455678899999999876653
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.67 E-value=2.1e-17 Score=155.25 Aligned_cols=123 Identities=20% Similarity=0.239 Sum_probs=95.0
Q ss_pred ccCCCCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcH---HHhhccCccEEEEcccccccCccccc
Q psy13032 3 RFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDF---KYFNRIKWQYLILDEAQAIVDINVYS 79 (190)
Q Consensus 3 k~~p~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~---~~l~~~~w~~vIvDEaH~lkn~~~~~ 79 (190)
+|+ ++++.+|+|+........ .......++|+|+||+++.++. ..+....|++||+||||+++|..+
T Consensus 221 ~~f-~l~v~v~~~~~~~~~~~~-------~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~-- 290 (968)
T 3dmq_A 221 RRF-NLRFALFDDERYAEAQHD-------AYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSED-- 290 (968)
T ss_dssp HHS-CCCCEECCHHHHHHHHHT-------TCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTT--
T ss_pred HHh-CCCEEEEccchhhhhhhh-------cccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCC--
Confidence 344 677888887654332111 1233467899999999998763 446677999999999999998321
Q ss_pred ccchhhhhhhHHHHHHhcC--CcCcEEEEecCCCCCCHHHHHHHHHhhCCCCCCChHHHHHHHhh
Q psy13032 80 YLNDIEREQSMRWKLLLGF--SCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSK 142 (190)
Q Consensus 80 ~~~~~~~~~s~~~~~~~~l--~~~~r~lLTgTP~~n~~~el~~ll~fl~p~~~~~~~~F~~~~~~ 142 (190)
..+..++++..+ +++++|+|||||++|++.|+|++++|++|+.|++...|.+.+..
T Consensus 291 -------~~s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~ 348 (968)
T 3dmq_A 291 -------APSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKN 348 (968)
T ss_dssp -------BCCHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHH
T ss_pred -------cchHHHHHHHHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHh
Confidence 234557777777 67889999999999999999999999999999999999877653
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.32 E-value=2.9e-12 Score=109.04 Aligned_cols=106 Identities=15% Similarity=0.171 Sum_probs=73.5
Q ss_pred CccC--CCCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHH--HhhccCccEEEEcccccccCccc
Q psy13032 2 ERFV--PDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK--YFNRIKWQYLILDEAQAIVDINV 77 (190)
Q Consensus 2 ~k~~--p~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~--~l~~~~w~~vIvDEaH~lkn~~~ 77 (190)
.+|+ |..++..++|......... .+ ..++|+|+||+.+..... .+....|++||+||||++++..
T Consensus 73 ~~~~~~~~~~v~~~~g~~~~~~~~~-~~---------~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~- 141 (494)
T 1wp9_A 73 RRLFNLPPEKIVALTGEKSPEERSK-AW---------ARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNY- 141 (494)
T ss_dssp HHHBCSCGGGEEEECSCSCHHHHHH-HH---------HHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTC-
T ss_pred HHHhCcchhheEEeeCCcchhhhhh-hc---------cCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCC-
Confidence 3455 5668999999764432211 11 247999999999987654 3345679999999999998732
Q ss_pred ccccchhhhhhhHHHHHH-hcCCcCcEEEEecCCCCCCHHHHHHHHHhhCCC
Q psy13032 78 YSYLNDIEREQSMRWKLL-LGFSCRNRLLLSGTPIQNSMAELWALLHFIMPS 128 (190)
Q Consensus 78 ~~~~~~~~~~~s~~~~~~-~~l~~~~r~lLTgTP~~n~~~el~~ll~fl~p~ 128 (190)
........+ ...+..++++|||||. |+..+++.++.++.+.
T Consensus 142 ---------~~~~~~~~~~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~ 183 (494)
T 1wp9_A 142 ---------AYVFIAREYKRQAKNPLVIGLTASPG-STPEKIMEVINNLGIE 183 (494)
T ss_dssp ---------HHHHHHHHHHHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCC
T ss_pred ---------cHHHHHHHHHhcCCCCeEEEEecCCC-CCcHHHHHHHHhcChh
Confidence 122222222 2346788999999999 7788888888888654
No 6
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=98.90 E-value=1.2e-09 Score=88.45 Aligned_cols=75 Identities=19% Similarity=0.264 Sum_probs=57.0
Q ss_pred CCccEEEecHHHHHhcHHHhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcC-CcCcEEEEecCCCCCCH
Q psy13032 37 ASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGF-SCRNRLLLSGTPIQNSM 115 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l-~~~~r~lLTgTP~~n~~ 115 (190)
...+|+|+||+.+.+...... -.+++||+||||++.+ . .....+..+ ...++++|||||. |..
T Consensus 203 ~~~~I~v~T~~~l~~~~~~~~-~~~~~vIiDEaH~~~~------------~--~~~~il~~~~~~~~~l~lSATp~-~~~ 266 (282)
T 1rif_A 203 NDAPVVVGTWQTVVKQPKEWF-SQFGMMMNDECHLATG------------K--SISSIISGLNNCMFKFGLSGSLR-DGK 266 (282)
T ss_dssp TTCSEEEECHHHHTTSCGGGG-GGEEEEEEETGGGCCH------------H--HHHHHTTTCTTCCEEEEECSSCC-TTS
T ss_pred cCCcEEEEchHHHHhhHHHHH-hhCCEEEEECCccCCc------------c--cHHHHHHHhhcCCeEEEEeCCCC-Ccc
Confidence 568999999999987644322 3689999999999975 3 344555666 6788999999995 555
Q ss_pred HHHHHHHHhhCC
Q psy13032 116 AELWALLHFIMP 127 (190)
Q Consensus 116 ~el~~ll~fl~p 127 (190)
.+++.++.++.|
T Consensus 267 ~~~~~l~~l~g~ 278 (282)
T 1rif_A 267 ANIMQYVGMFGE 278 (282)
T ss_dssp TTHHHHHHHHCE
T ss_pred hHHHHHHHhcCC
Confidence 778888887765
No 7
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=98.77 E-value=4.1e-09 Score=91.72 Aligned_cols=100 Identities=11% Similarity=0.156 Sum_probs=62.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHH--h-hccCccEEEEcccccccCcccccccch
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY--F-NRIKWQYLILDEAQAIVDINVYSYLND 83 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~--l-~~~~w~~vIvDEaH~lkn~~~~~~~~~ 83 (190)
++++..++|........... ...++|+|+|++.+...... + .-..|++||+||||++.+.
T Consensus 80 ~~~~~~~~g~~~~~~~~~~~---------~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~-------- 142 (555)
T 3tbk_A 80 GYNIASISGATSDSVSVQHI---------IEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKN-------- 142 (555)
T ss_dssp TCCEEEECTTTGGGSCHHHH---------HHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTT--------
T ss_pred CcEEEEEcCCCcchhhHHHH---------hcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCc--------
Confidence 67788888876433211111 12478999999999875542 2 2235899999999999872
Q ss_pred hhhhhhHHH---HHHhcC------CcCcEEEEecCCCCCC-------HHHHHHHHHhhCC
Q psy13032 84 IEREQSMRW---KLLLGF------SCRNRLLLSGTPIQNS-------MAELWALLHFIMP 127 (190)
Q Consensus 84 ~~~~~s~~~---~~~~~l------~~~~r~lLTgTP~~n~-------~~el~~ll~fl~p 127 (190)
.+... ..+... ....+++|||||.+++ ...+..+...++.
T Consensus 143 ----~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~ 198 (555)
T 3tbk_A 143 ----HPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDA 198 (555)
T ss_dssp ----CHHHHHHHHHHHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTC
T ss_pred ----chHHHHHHHHHHhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCC
Confidence 22111 111111 2346899999999876 4445555566654
No 8
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=98.74 E-value=2.2e-08 Score=86.41 Aligned_cols=62 Identities=16% Similarity=0.174 Sum_probs=49.0
Q ss_pred CccEEEecHHHHHhcHHHhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCC
Q psy13032 38 SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNS 114 (190)
Q Consensus 38 ~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~ 114 (190)
..+|+|+||+.+....+.+. -.|++||+||||++.+ .... ..+..+.+.++++|||||.+++
T Consensus 171 ~~~Ivv~T~~~l~~~~~~~~-~~~~liIvDEaH~~~~------------~~~~--~~~~~~~~~~~l~lSATp~~~~ 232 (472)
T 2fwr_A 171 LKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPA------------ESYV--QIAQMSIAPFRLGLTATFERED 232 (472)
T ss_dssp CCSEEEEEHHHHHHTHHHHT-TTCSEEEEETGGGTTS------------TTTH--HHHHTCCCSEEEEEESCCCCTT
T ss_pred cCCEEEEEcHHHHHHHHHhc-CCCCEEEEECCcCCCC------------hHHH--HHHHhcCCCeEEEEecCccCCC
Confidence 46899999999988776553 3599999999999987 3322 2455667889999999999654
No 9
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=98.72 E-value=2.6e-09 Score=93.09 Aligned_cols=77 Identities=18% Similarity=0.273 Sum_probs=56.3
Q ss_pred CCccEEEecHHHHHhcHHHhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcC-CcCcEEEEecCCCCCCH
Q psy13032 37 ASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGF-SCRNRLLLSGTPIQNSM 115 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l-~~~~r~lLTgTP~~n~~ 115 (190)
+..+|+|+||+.+.+...... -.|++||+||||++.+ . .....+..+ .+..+++||||| .+..
T Consensus 203 ~~~~I~i~T~~~l~~~~~~~~-~~~~liIiDE~H~~~~------------~--~~~~il~~~~~~~~~l~lSATp-~~~~ 266 (510)
T 2oca_A 203 NDAPVVVGTWQTVVKQPKEWF-SQFGMMMNDECHLATG------------K--SISSIISGLNNCMFKFGLSGSL-RDGK 266 (510)
T ss_dssp TTCSEEEEEHHHHTTSCGGGG-GGEEEEEEETGGGCCH------------H--HHHHHGGGCTTCCEEEEEESCG-GGCS
T ss_pred cCCcEEEEeHHHHhhchhhhh-hcCCEEEEECCcCCCc------------c--cHHHHHHhcccCcEEEEEEeCC-CCCc
Confidence 568999999999877533222 3689999999999965 2 233445666 677899999999 5555
Q ss_pred HHHHHHHHhhCCCC
Q psy13032 116 AELWALLHFIMPSM 129 (190)
Q Consensus 116 ~el~~ll~fl~p~~ 129 (190)
.+++.+..+..+..
T Consensus 267 ~~~~~~~~~~~~~~ 280 (510)
T 2oca_A 267 ANIMQYVGMFGEIF 280 (510)
T ss_dssp SCHHHHHHHHCSEE
T ss_pred ccHHHhHHhhCCeE
Confidence 66777777776644
No 10
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=98.72 E-value=6.2e-09 Score=95.82 Aligned_cols=94 Identities=12% Similarity=0.134 Sum_probs=56.6
Q ss_pred CccCC--CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHH--h-hccCccEEEEcccccccCcc
Q psy13032 2 ERFVP--DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY--F-NRIKWQYLILDEAQAIVDIN 76 (190)
Q Consensus 2 ~k~~p--~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~--l-~~~~w~~vIvDEaH~lkn~~ 76 (190)
++|++ ++++..++|........... ...++|+|+|++.+...... + .--.|++||+||||++.+..
T Consensus 317 ~~~~~~~~~~v~~~~g~~~~~~~~~~~---------~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~ 387 (797)
T 4a2q_A 317 KHHFERQGYSVQGISGENFSNVSVEKV---------IEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNH 387 (797)
T ss_dssp HHHHGGGTCCEEEECCC-----CHHHH---------HHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTS
T ss_pred HHhcccCCceEEEEeCCcchhhhHHHh---------hCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCc
Confidence 34555 78899999987443322211 13579999999999875432 1 12357999999999998722
Q ss_pred cccccchhhhhhhHHH-HHHhc-----CCcCcEEEEecCCCCCC
Q psy13032 77 VYSYLNDIEREQSMRW-KLLLG-----FSCRNRLLLSGTPIQNS 114 (190)
Q Consensus 77 ~~~~~~~~~~~~s~~~-~~~~~-----l~~~~r~lLTgTP~~n~ 114 (190)
...... ..+.. -....+++|||||.+++
T Consensus 388 ----------~~~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~ 421 (797)
T 4a2q_A 388 ----------PYNVLMTRYLEQKFNSASQLPQILGLTASVGVGN 421 (797)
T ss_dssp ----------HHHHHHHHHHHHHHTTCCCCCEEEEEESCCCCTT
T ss_pred ----------cHHHHHHHHHHHhhccCCCCCeEEEEcCCccccc
Confidence 111111 11111 23367999999998764
No 11
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=98.71 E-value=5.5e-09 Score=91.18 Aligned_cols=107 Identities=11% Similarity=0.143 Sum_probs=61.5
Q ss_pred ccCC--CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHH--h-hccCccEEEEcccccccCccc
Q psy13032 3 RFVP--DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY--F-NRIKWQYLILDEAQAIVDINV 77 (190)
Q Consensus 3 k~~p--~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~--l-~~~~w~~vIvDEaH~lkn~~~ 77 (190)
+|++ ++++..++|............ ..++|+|+|++.+...... + .-..|++||+||||++.+..
T Consensus 77 ~~~~~~~~~~~~~~g~~~~~~~~~~~~---------~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~- 146 (556)
T 4a2p_A 77 HHFERQGYSVQGISGENFSNVSVEKVI---------EDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNH- 146 (556)
T ss_dssp HHHGGGTCCEEECCCC-----CHHHHH---------HHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTS-
T ss_pred HHhcccCceEEEEeCCCCcchhHHHhh---------CCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcc-
Confidence 3444 688888888774332221111 2478999999999875432 2 23368999999999998732
Q ss_pred ccccchhhhhhhHHH-HHHhc-----CCcCcEEEEecCCCCCCH-------HHHHHHHHhhCCC
Q psy13032 78 YSYLNDIEREQSMRW-KLLLG-----FSCRNRLLLSGTPIQNSM-------AELWALLHFIMPS 128 (190)
Q Consensus 78 ~~~~~~~~~~~s~~~-~~~~~-----l~~~~r~lLTgTP~~n~~-------~el~~ll~fl~p~ 128 (190)
...... ..+.. -....+++|||||.+++. .++..+...+++.
T Consensus 147 ---------~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~ 201 (556)
T 4a2p_A 147 ---------PYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQ 201 (556)
T ss_dssp ---------HHHHHHHHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCS
T ss_pred ---------hHHHHHHHHHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCe
Confidence 111111 11111 133678999999988653 3444445555543
No 12
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=98.68 E-value=3.1e-08 Score=78.66 Aligned_cols=62 Identities=16% Similarity=0.152 Sum_probs=46.8
Q ss_pred CccEEEecHHHHHhcHHHhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCC
Q psy13032 38 SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNS 114 (190)
Q Consensus 38 ~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~ 114 (190)
..+|+|+||+.+......+. -.|++||+||||++.+ .. ....+..+...++++|||||..++
T Consensus 171 ~~~i~v~T~~~l~~~~~~~~-~~~~llIiDEaH~l~~------------~~--~~~i~~~~~~~~~l~LSATp~r~D 232 (237)
T 2fz4_A 171 LKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPA------------ES--YVQIAQMSIAPFRLGLTATFERED 232 (237)
T ss_dssp CCSEEEEEHHHHHHTHHHHT-TTCSEEEEECSSCCCT------------TT--HHHHHHTCCCSEEEEEEESCC---
T ss_pred cCCEEEEeHHHHHhhHHHhc-ccCCEEEEECCccCCC------------hH--HHHHHHhccCCEEEEEecCCCCCC
Confidence 56899999999988776553 3699999999999976 32 223445567889999999998765
No 13
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=98.67 E-value=5.4e-09 Score=97.96 Aligned_cols=94 Identities=12% Similarity=0.127 Sum_probs=56.3
Q ss_pred ccCC--CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHH--h-hccCccEEEEcccccccCccc
Q psy13032 3 RFVP--DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY--F-NRIKWQYLILDEAQAIVDINV 77 (190)
Q Consensus 3 k~~p--~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~--l-~~~~w~~vIvDEaH~lkn~~~ 77 (190)
+|+| ++++.+++|+...+...... ...+||+|+|++.+...... + .--.|++||+||||++.+..
T Consensus 318 ~~~~~~~~~v~~~~G~~~~~~~~~~~---------~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~- 387 (936)
T 4a2w_A 318 HHFERQGYSVQGISGENFSNVSVEKV---------IEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNH- 387 (936)
T ss_dssp HHHHTTTCCEEEECCC-----CCHHH---------HHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTC-
T ss_pred HHhcccCceEEEEECCcchhhHHHHh---------ccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCc-
Confidence 4555 78899999887443321111 12479999999999875442 1 12258999999999998832
Q ss_pred ccccchhhhhhhHHH-HHHhc-----CCcCcEEEEecCCCCCCH
Q psy13032 78 YSYLNDIEREQSMRW-KLLLG-----FSCRNRLLLSGTPIQNSM 115 (190)
Q Consensus 78 ~~~~~~~~~~~s~~~-~~~~~-----l~~~~r~lLTgTP~~n~~ 115 (190)
...... ..+.. -....+++|||||.+++.
T Consensus 388 ---------~~~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~ 422 (936)
T 4a2w_A 388 ---------PYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNA 422 (936)
T ss_dssp ---------HHHHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTC
T ss_pred ---------cHHHHHHHHHHHhhccCCCcCeEEEecCCcccccc
Confidence 111111 11111 233679999999988653
No 14
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=98.65 E-value=7.7e-09 Score=93.26 Aligned_cols=106 Identities=15% Similarity=0.186 Sum_probs=64.3
Q ss_pred ccCC--CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHH--h-hccCccEEEEcccccccCccc
Q psy13032 3 RFVP--DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY--F-NRIKWQYLILDEAQAIVDINV 77 (190)
Q Consensus 3 k~~p--~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~--l-~~~~w~~vIvDEaH~lkn~~~ 77 (190)
+|++ ++++..++|+...+......+ ..++|+|+|++.+...... + .-..|++||+||||++.+..
T Consensus 83 ~~~~~~~~~v~~~~g~~~~~~~~~~~~---------~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~- 152 (696)
T 2ykg_A 83 KYFERHGYRVTGISGATAENVPVEQIV---------ENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQH- 152 (696)
T ss_dssp HHTTTTTCCEEEECSSSCSSSCHHHHH---------HTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTC-
T ss_pred HHhccCCceEEEEeCCccccccHHHhc---------cCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcc-
Confidence 4555 678888888653221111110 2579999999999876542 2 23468999999999998732
Q ss_pred ccccchhhhhhhHHHH-HHh----cC--CcCcEEEEecCCCCC-------CHHHHHHHHHhhCC
Q psy13032 78 YSYLNDIEREQSMRWK-LLL----GF--SCRNRLLLSGTPIQN-------SMAELWALLHFIMP 127 (190)
Q Consensus 78 ~~~~~~~~~~~s~~~~-~~~----~l--~~~~r~lLTgTP~~n-------~~~el~~ll~fl~p 127 (190)
....... .+. .. ....+++|||||..+ .+.++..++..++.
T Consensus 153 ---------~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~ 207 (696)
T 2ykg_A 153 ---------PYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDA 207 (696)
T ss_dssp ---------HHHHHHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTC
T ss_pred ---------cHHHHHHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCC
Confidence 1111111 111 11 446789999999854 35556666655544
No 15
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=98.57 E-value=3.7e-08 Score=88.84 Aligned_cols=114 Identities=15% Similarity=0.172 Sum_probs=63.4
Q ss_pred ccCCC-CeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcH--------HHhhccCccEEEEccccccc
Q psy13032 3 RFVPD-FKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDF--------KYFNRIKWQYLILDEAQAIV 73 (190)
Q Consensus 3 k~~p~-l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~--------~~l~~~~w~~vIvDEaH~lk 73 (190)
+|.+. +++..++|+.......... .+.++|+|+|++.+.... ..+.-..|++||+||||++.
T Consensus 79 ~~~~~~~~v~~~~g~~~~~~~~~~~---------~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~ 149 (699)
T 4gl2_A 79 PFLKKWYRVIGLSGDTQLKISFPEV---------VKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTN 149 (699)
T ss_dssp HHHTTTSCEEEEC----CCCCHHHH---------HHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCB
T ss_pred HHcCcCceEEEEeCCcchhhHHHhh---------hcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccC
Confidence 45555 8999999986433211111 146899999999998633 12334579999999999986
Q ss_pred CcccccccchhhhhhhHHHHHH-------hcCCcCcEEEEecCCCCC-------CHHHHHHHHHhhCC
Q psy13032 74 DINVYSYLNDIEREQSMRWKLL-------LGFSCRNRLLLSGTPIQN-------SMAELWALLHFIMP 127 (190)
Q Consensus 74 n~~~~~~~~~~~~~~s~~~~~~-------~~l~~~~r~lLTgTP~~n-------~~~el~~ll~fl~p 127 (190)
+...... ....-.....+.. ........++|||||..+ ...++..++..+++
T Consensus 150 ~~~~~~~--i~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~ 215 (699)
T 4gl2_A 150 KEAVYNN--IMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDA 215 (699)
T ss_dssp TTBSSCS--HHHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTC
T ss_pred ccchHHH--HHHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCC
Confidence 5221110 0000000000000 011446789999999986 34455666667776
No 16
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=98.57 E-value=3e-08 Score=88.06 Aligned_cols=75 Identities=19% Similarity=0.258 Sum_probs=47.6
Q ss_pred CCccEEEecHHHHHhcHH------HhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCC
Q psy13032 37 ASFHVVITSYQLVVSDFK------YFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTP 110 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~~------~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP 110 (190)
...+|+|+||+.+..... .+....|++||+||||++.+. ..+.....+..+....+++|||||
T Consensus 273 ~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~-----------~~~~~~~il~~~~~~~~l~lTATP 341 (590)
T 3h1t_A 273 KSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSAR-----------DNSNWREILEYFEPAFQIGMTATP 341 (590)
T ss_dssp SSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC--------------------CHHHHHHSTTSEEEEEESSC
T ss_pred CCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCcccccc-----------chHHHHHHHHhCCcceEEEecccc
Confidence 578999999999987532 233346999999999999761 112333444556677899999999
Q ss_pred CCCCHHHHHHHH
Q psy13032 111 IQNSMAELWALL 122 (190)
Q Consensus 111 ~~n~~~el~~ll 122 (190)
..+...+++.++
T Consensus 342 ~~~~~~~~~~~f 353 (590)
T 3h1t_A 342 LREDNRDTYRYF 353 (590)
T ss_dssp SCTTTHHHHHHS
T ss_pred ccccchhHHHHc
Confidence 998887766554
No 17
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=98.52 E-value=1.1e-07 Score=72.86 Aligned_cols=96 Identities=20% Similarity=0.217 Sum_probs=58.1
Q ss_pred ccCCCCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHH--hhccCccEEEEcccccccCcccccc
Q psy13032 3 RFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY--FNRIKWQYLILDEAQAIVDINVYSY 80 (190)
Q Consensus 3 k~~p~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~--l~~~~w~~vIvDEaH~lkn~~~~~~ 80 (190)
++.+.+++..++|........... ...++|+|+|++.+...... +.--.+++||+||||++.+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~---- 160 (207)
T 2gxq_A 94 AVAPHLKVVAVYGGTGYGKQKEAL---------LRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMG---- 160 (207)
T ss_dssp HHCTTSCEEEECSSSCSHHHHHHH---------HHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTT----
T ss_pred HHhhcceEEEEECCCChHHHHHHh---------hCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccc----
Confidence 455667777777754332221111 13579999999998764432 222358999999999985421
Q ss_pred cchhhhhhhHHHHHHhcCC-cCcEEEEecCCCCCCHHHH
Q psy13032 81 LNDIEREQSMRWKLLLGFS-CRNRLLLSGTPIQNSMAEL 118 (190)
Q Consensus 81 ~~~~~~~~s~~~~~~~~l~-~~~r~lLTgTP~~n~~~el 118 (190)
........+..+. ....+++|||+- +.+.++
T Consensus 161 ------~~~~~~~i~~~~~~~~~~i~~SAT~~-~~~~~~ 192 (207)
T 2gxq_A 161 ------FEEEVEALLSATPPSRQTLLFSATLP-SWAKRL 192 (207)
T ss_dssp ------CHHHHHHHHHTSCTTSEEEEECSSCC-HHHHHH
T ss_pred ------hHHHHHHHHHhCCccCeEEEEEEecC-HHHHHH
Confidence 2333344444554 445799999984 445544
No 18
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=98.42 E-value=7.1e-07 Score=68.23 Aligned_cols=88 Identities=24% Similarity=0.230 Sum_probs=56.4
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHH--hhccCccEEEEcccccccCcccccccc
Q psy13032 5 VPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY--FNRIKWQYLILDEAQAIVDINVYSYLN 82 (190)
Q Consensus 5 ~p~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~--l~~~~w~~vIvDEaH~lkn~~~~~~~~ 82 (190)
.|++++..+.|.......... ....++|+|+|++.+...... +.--.++++|+||||++....
T Consensus 98 ~~~~~~~~~~g~~~~~~~~~~---------~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~------ 162 (206)
T 1vec_A 98 MGGAKVMATTGGTNLRDDIMR---------LDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQD------ 162 (206)
T ss_dssp SSSCCEEEECSSSCHHHHHHH---------TTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTT------
T ss_pred cCCceEEEEeCCccHHHHHHh---------cCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhC------
Confidence 357788888887654443322 124689999999998654331 112367899999999986521
Q ss_pred hhhhhhhHHHHHHhcCC-cCcEEEEecCCC
Q psy13032 83 DIEREQSMRWKLLLGFS-CRNRLLLSGTPI 111 (190)
Q Consensus 83 ~~~~~~s~~~~~~~~l~-~~~r~lLTgTP~ 111 (190)
........+..++ ....+++|||+-
T Consensus 163 ----~~~~l~~i~~~~~~~~~~l~~SAT~~ 188 (206)
T 1vec_A 163 ----FVQIMEDIILTLPKNRQILLYSATFP 188 (206)
T ss_dssp ----THHHHHHHHHHSCTTCEEEEEESCCC
T ss_pred ----cHHHHHHHHHhCCccceEEEEEeeCC
Confidence 2233333444454 456899999984
No 19
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=98.40 E-value=8e-07 Score=69.61 Aligned_cols=91 Identities=21% Similarity=0.302 Sum_probs=57.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHH---hhccCccEEEEcccccccCcccccccch
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY---FNRIKWQYLILDEAQAIVDINVYSYLND 83 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~---l~~~~w~~vIvDEaH~lkn~~~~~~~~~ 83 (190)
++++..++|.......... ...++|+|+|++.+...... +.-..+++||+||||++.+..
T Consensus 125 ~~~~~~~~g~~~~~~~~~~----------~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~------- 187 (236)
T 2pl3_A 125 DFSAGLIIGGKDLKHEAER----------INNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMG------- 187 (236)
T ss_dssp SCCEEEECCC--CHHHHHH----------HTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTT-------
T ss_pred CeeEEEEECCCCHHHHHHh----------CCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCC-------
Confidence 4677777776544332221 14689999999999765432 222468899999999986521
Q ss_pred hhhhhhHHHHHHhcCC-cCcEEEEecCCCCCCHHHH
Q psy13032 84 IEREQSMRWKLLLGFS-CRNRLLLSGTPIQNSMAEL 118 (190)
Q Consensus 84 ~~~~~s~~~~~~~~l~-~~~r~lLTgTP~~n~~~el 118 (190)
........+..+. ....+++|||+- +.+.++
T Consensus 188 ---~~~~~~~i~~~~~~~~~~l~~SAT~~-~~~~~~ 219 (236)
T 2pl3_A 188 ---FADTMNAVIENLPKKRQTLLFSATQT-KSVKDL 219 (236)
T ss_dssp ---THHHHHHHHHTSCTTSEEEEEESSCC-HHHHHH
T ss_pred ---cHHHHHHHHHhCCCCCeEEEEEeeCC-HHHHHH
Confidence 2344445555564 445799999984 344443
No 20
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=98.38 E-value=5.9e-07 Score=69.54 Aligned_cols=96 Identities=16% Similarity=0.210 Sum_probs=57.9
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHH--hhccCccEEEEcccccccCcccccccc
Q psy13032 5 VPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY--FNRIKWQYLILDEAQAIVDINVYSYLN 82 (190)
Q Consensus 5 ~p~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~--l~~~~w~~vIvDEaH~lkn~~~~~~~~ 82 (190)
.|++++..++|........... ..+.++|+|+|++.+...... +.--.++++|+||||++.+..
T Consensus 109 ~~~~~v~~~~g~~~~~~~~~~~--------~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~------ 174 (220)
T 1t6n_A 109 MPNVKVAVFFGGLSIKKDEEVL--------KKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQL------ 174 (220)
T ss_dssp STTCCEEEESCCSCHHHHHHHH--------HHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSH------
T ss_pred CCCceEEEEeCCCChHHHHHHH--------hcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhccc------
Confidence 3578888888865433222111 013579999999998764332 122367999999999985410
Q ss_pred hhhhhhhHHHHHHhcCC-cCcEEEEecCCCCCCHHHH
Q psy13032 83 DIEREQSMRWKLLLGFS-CRNRLLLSGTPIQNSMAEL 118 (190)
Q Consensus 83 ~~~~~~s~~~~~~~~l~-~~~r~lLTgTP~~n~~~el 118 (190)
+........+..+. ....+++||||- +.+.++
T Consensus 175 ---~~~~~~~~i~~~~~~~~~~i~~SAT~~-~~~~~~ 207 (220)
T 1t6n_A 175 ---DMRRDVQEIFRMTPHEKQVMMFSATLS-KEIRPV 207 (220)
T ss_dssp ---HHHHHHHHHHHTSCSSSEEEEEESCCC-TTTHHH
T ss_pred ---CcHHHHHHHHHhCCCcCeEEEEEeecC-HHHHHH
Confidence 02223333344443 456799999995 445543
No 21
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=98.23 E-value=2.1e-06 Score=66.45 Aligned_cols=72 Identities=15% Similarity=0.139 Sum_probs=47.6
Q ss_pred CCccEEEecHHHHHhcHHH--hhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCC-cCcEEEEecCCCCC
Q psy13032 37 ASFHVVITSYQLVVSDFKY--FNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFS-CRNRLLLSGTPIQN 113 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~~~--l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~-~~~r~lLTgTP~~n 113 (190)
..++|+|+|++.+...... +.-..++++|+||||++.+.. ........+..++ ....+++|||+ .+
T Consensus 125 ~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~----------~~~~l~~i~~~~~~~~~~l~~SAT~-~~ 193 (219)
T 1q0u_A 125 VQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMG----------FITDVDQIAARMPKDLQMLVFSATI-PE 193 (219)
T ss_dssp SCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTT----------CHHHHHHHHHTSCTTCEEEEEESCC-CG
T ss_pred CCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhC----------hHHHHHHHHHhCCcccEEEEEecCC-CH
Confidence 4689999999998764331 112357899999999986421 2333444555554 34689999997 45
Q ss_pred CHHHHH
Q psy13032 114 SMAELW 119 (190)
Q Consensus 114 ~~~el~ 119 (190)
.+.++.
T Consensus 194 ~~~~~~ 199 (219)
T 1q0u_A 194 KLKPFL 199 (219)
T ss_dssp GGHHHH
T ss_pred HHHHHH
Confidence 565543
No 22
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=98.23 E-value=2.2e-06 Score=70.47 Aligned_cols=66 Identities=21% Similarity=0.260 Sum_probs=44.9
Q ss_pred CccEEEecHHHHHhcHHH--hhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcC-CcCcEEEEecCCCCC
Q psy13032 38 SFHVVITSYQLVVSDFKY--FNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGF-SCRNRLLLSGTPIQN 113 (190)
Q Consensus 38 ~~dvvitsy~~~~~~~~~--l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l-~~~~r~lLTgTP~~n 113 (190)
.++|+|+|++.+...... +.-..|++||+||||++.+.. ........+..+ .....+++||||..+
T Consensus 123 ~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~----------~~~~~~~~~~~~~~~~~~i~~SAT~~~~ 191 (367)
T 1hv8_A 123 NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMG----------FIKDVEKILNACNKDKRILLFSATMPRE 191 (367)
T ss_dssp TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTT----------THHHHHHHHHTSCSSCEEEEECSSCCHH
T ss_pred CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhc----------hHHHHHHHHHhCCCCceEEEEeeccCHH
Confidence 579999999998765432 222468999999999987621 223333444444 345679999999653
No 23
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=98.23 E-value=3.1e-06 Score=67.22 Aligned_cols=92 Identities=18% Similarity=0.238 Sum_probs=56.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHh---hccCccEEEEcccccccCcccccccch
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYF---NRIKWQYLILDEAQAIVDINVYSYLND 83 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l---~~~~w~~vIvDEaH~lkn~~~~~~~~~ 83 (190)
++++..+.|........... ...++|+|+|++.+....... .--.+++||+||||++.+..
T Consensus 139 ~~~~~~~~g~~~~~~~~~~~---------~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~------- 202 (249)
T 3ber_A 139 GVQSAVIVGGIDSMSQSLAL---------AKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMD------- 202 (249)
T ss_dssp TCCEEEECTTSCHHHHHHHH---------HTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTT-------
T ss_pred CeeEEEEECCCChHHHHHHh---------cCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccC-------
Confidence 46677777754333222111 146899999999997654432 22357899999999986521
Q ss_pred hhhhhhHHHHHHhcCC-cCcEEEEecCCCCCCHHHH
Q psy13032 84 IEREQSMRWKLLLGFS-CRNRLLLSGTPIQNSMAEL 118 (190)
Q Consensus 84 ~~~~~s~~~~~~~~l~-~~~r~lLTgTP~~n~~~el 118 (190)
-.......+..++ ....+++|||+- +.+.++
T Consensus 203 ---~~~~l~~i~~~~~~~~~~l~~SAT~~-~~v~~~ 234 (249)
T 3ber_A 203 ---FETEVDKILKVIPRDRKTFLFSATMT-KKVQKL 234 (249)
T ss_dssp ---CHHHHHHHHHSSCSSSEEEEEESSCC-HHHHHH
T ss_pred ---hHHHHHHHHHhCCCCCeEEEEeccCC-HHHHHH
Confidence 2333444455554 456799999984 344443
No 24
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=98.22 E-value=7.8e-07 Score=68.14 Aligned_cols=37 Identities=16% Similarity=0.323 Sum_probs=24.6
Q ss_pred CccEEEecHHHHHhcHHH--------hhccCccEEEEcccccccC
Q psy13032 38 SFHVVITSYQLVVSDFKY--------FNRIKWQYLILDEAQAIVD 74 (190)
Q Consensus 38 ~~dvvitsy~~~~~~~~~--------l~~~~w~~vIvDEaH~lkn 74 (190)
.++|+|+|++.+...... +.-..|++||+||||++..
T Consensus 132 ~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~ 176 (216)
T 3b6e_A 132 SCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK 176 (216)
T ss_dssp HCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-----
T ss_pred CCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhcc
Confidence 378999999999765443 2234689999999999964
No 25
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=98.22 E-value=2e-06 Score=67.20 Aligned_cols=87 Identities=15% Similarity=0.110 Sum_probs=54.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHH--hhccCccEEEEcccccccCcccccccch
Q psy13032 6 PDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY--FNRIKWQYLILDEAQAIVDINVYSYLND 83 (190)
Q Consensus 6 p~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~--l~~~~w~~vIvDEaH~lkn~~~~~~~~~ 83 (190)
+++++.++.|.......... ...++|+|+|++.+...... +.--.++++|+||||++.+...
T Consensus 120 ~~~~~~~~~g~~~~~~~~~~----------~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~------ 183 (230)
T 2oxc_A 120 EGLECHVFIGGTPLSQDKTR----------LKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGS------ 183 (230)
T ss_dssp TTCCEEEECTTSCHHHHHHH----------TTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTS------
T ss_pred CCceEEEEeCCCCHHHHHHh----------ccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcc------
Confidence 57888888886543332221 13589999999998764321 1223578999999999865210
Q ss_pred hhhhhhHHHHHHhcCC-cCcEEEEecCCC
Q psy13032 84 IEREQSMRWKLLLGFS-CRNRLLLSGTPI 111 (190)
Q Consensus 84 ~~~~~s~~~~~~~~l~-~~~r~lLTgTP~ 111 (190)
-.......+..++ ....+++|||+-
T Consensus 184 ---~~~~~~~i~~~~~~~~~~l~lSAT~~ 209 (230)
T 2oxc_A 184 ---FQEQINWIYSSLPASKQMLAVSATYP 209 (230)
T ss_dssp ---SHHHHHHHHHHSCSSCEEEEEESCCC
T ss_pred ---hHHHHHHHHHhCCCCCeEEEEEeccC
Confidence 1222333444554 456799999963
No 26
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=98.18 E-value=1.7e-06 Score=73.13 Aligned_cols=60 Identities=13% Similarity=0.463 Sum_probs=43.1
Q ss_pred CCeEEEEeCCHHHH--HHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEccccccc
Q psy13032 7 DFKVVPYWGSPQER--KILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIV 73 (190)
Q Consensus 7 ~l~v~~~~G~~~~r--~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lk 73 (190)
++++..++|..... ....... ..+.++|+|+|.+.+......+....+++||+||||++.
T Consensus 91 ~~~v~~~~g~~~~~~~~~~~~~l-------~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~ 152 (414)
T 3oiy_A 91 KVKIFGFYSSMKKEEKEKFEKSF-------EEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVL 152 (414)
T ss_dssp SCCEEECCTTSCHHHHHHHHHHH-------HHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCHHHHH
T ss_pred CceEEEEECCCChhhHHHHHHHh-------hcCCCCEEEECHHHHHHHHHHhccccccEEEEeChHhhh
Confidence 77899988866431 1111110 114589999999999887776666689999999999874
No 27
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=98.17 E-value=3e-06 Score=70.52 Aligned_cols=92 Identities=16% Similarity=0.203 Sum_probs=56.4
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHH--hhccCccEEEEcccccccCcccccccc
Q psy13032 5 VPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY--FNRIKWQYLILDEAQAIVDINVYSYLN 82 (190)
Q Consensus 5 ~p~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~--l~~~~w~~vIvDEaH~lkn~~~~~~~~ 82 (190)
.|++++..+.|........... ..+.++|+|+|++.+...... +.-..+++||+||||++.+...
T Consensus 103 ~~~~~~~~~~g~~~~~~~~~~~--------~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~----- 169 (391)
T 1xti_A 103 MPNVKVAVFFGGLSIKKDEEVL--------KKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD----- 169 (391)
T ss_dssp CTTCCEEEECTTSCHHHHHHHH--------HHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHH-----
T ss_pred CCCeEEEEEeCCCCHHHHHHHH--------hcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccc-----
Confidence 4678888888865433222111 014579999999999764332 2234689999999999976210
Q ss_pred hhhhhhhHHHHHHhcCC-cCcEEEEecCCCCC
Q psy13032 83 DIEREQSMRWKLLLGFS-CRNRLLLSGTPIQN 113 (190)
Q Consensus 83 ~~~~~~s~~~~~~~~l~-~~~r~lLTgTP~~n 113 (190)
........+.... ....+++||||-..
T Consensus 170 ----~~~~~~~~~~~~~~~~~~i~~SAT~~~~ 197 (391)
T 1xti_A 170 ----MRRDVQEIFRMTPHEKQVMMFSATLSKE 197 (391)
T ss_dssp ----HHHHHHHHHHTSCSSSEEEEEESSCCST
T ss_pred ----hHHHHHHHHhhCCCCceEEEEEeeCCHH
Confidence 1122222333333 45689999999654
No 28
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=98.10 E-value=4.9e-06 Score=64.40 Aligned_cols=91 Identities=21% Similarity=0.226 Sum_probs=51.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHH--hhccCccEEEEcccccccCcccccccchh
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY--FNRIKWQYLILDEAQAIVDINVYSYLNDI 84 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~--l~~~~w~~vIvDEaH~lkn~~~~~~~~~~ 84 (190)
++++..+.|......... ....++|+|+|++.+...... +.--.+++||+||||++.+..
T Consensus 110 ~~~~~~~~g~~~~~~~~~----------~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~-------- 171 (224)
T 1qde_A 110 DIKVHACIGGTSFVEDAE----------GLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSG-------- 171 (224)
T ss_dssp CCCEEEECC--------------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTT--------
T ss_pred CceEEEEeCCcchHHHHh----------cCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhh--------
Confidence 456666666543322111 123489999999998754322 112357899999999986421
Q ss_pred hhhhhHHHHHHhcCC-cCcEEEEecCCCCCCHHHH
Q psy13032 85 EREQSMRWKLLLGFS-CRNRLLLSGTPIQNSMAEL 118 (190)
Q Consensus 85 ~~~~s~~~~~~~~l~-~~~r~lLTgTP~~n~~~el 118 (190)
........+..+. ....+++|||+- +.+.++
T Consensus 172 --~~~~l~~i~~~~~~~~~~i~lSAT~~-~~~~~~ 203 (224)
T 1qde_A 172 --FKEQIYQIFTLLPPTTQVVLLSATMP-NDVLEV 203 (224)
T ss_dssp --CHHHHHHHHHHSCTTCEEEEEESSCC-HHHHHH
T ss_pred --hHHHHHHHHHhCCccCeEEEEEeecC-HHHHHH
Confidence 2233334444443 445799999984 344444
No 29
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=98.09 E-value=6.6e-06 Score=68.92 Aligned_cols=66 Identities=15% Similarity=0.207 Sum_probs=45.8
Q ss_pred CCccEEEecHHHHHhcHHH--hhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCC-cCcEEEEecCCCC
Q psy13032 37 ASFHVVITSYQLVVSDFKY--FNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFS-CRNRLLLSGTPIQ 112 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~~~--l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~-~~~r~lLTgTP~~ 112 (190)
..++|+|+|++.+...... +....+++||+||||++.+.. ........+..+. ....+++||||-.
T Consensus 158 ~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~----------~~~~~~~~~~~~~~~~~~i~~SAT~~~ 226 (414)
T 3eiq_A 158 EAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRG----------FKDQIYDIFQKLNSNTQVVLLSATMPS 226 (414)
T ss_dssp TCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTT----------THHHHHHHHTTSCTTCEEEEECSCCCH
T ss_pred CCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccC----------cHHHHHHHHHhCCCCCeEEEEEEecCH
Confidence 5689999999998764432 223458999999999986521 3344555555663 4567899999953
No 30
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=98.08 E-value=6.6e-06 Score=65.06 Aligned_cols=71 Identities=20% Similarity=0.279 Sum_probs=44.7
Q ss_pred CCccEEEecHHHHHhcHHH--hhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcC--C---cCcEEEEecC
Q psy13032 37 ASFHVVITSYQLVVSDFKY--FNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGF--S---CRNRLLLSGT 109 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~~~--l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l--~---~~~r~lLTgT 109 (190)
..++|+|+|++.+...... +.--.++++|+||||++.+.. -.......+..+ . ....+++|||
T Consensus 149 ~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~----------~~~~~~~i~~~~~~~~~~~~q~l~~SAT 218 (253)
T 1wrb_A 149 MGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMG----------FEPQIRKIIEESNMPSGINRQTLMFSAT 218 (253)
T ss_dssp SCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTT----------CHHHHHHHHHSSCCCCGGGCEEEEEESS
T ss_pred CCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCc----------hHHHHHHHHhhccCCCCCCcEEEEEEEe
Confidence 4579999999998764332 112356899999999986421 123334444433 2 3458999999
Q ss_pred CCCCCHHHH
Q psy13032 110 PIQNSMAEL 118 (190)
Q Consensus 110 P~~n~~~el 118 (190)
|- +.+.++
T Consensus 219 ~~-~~~~~~ 226 (253)
T 1wrb_A 219 FP-KEIQKL 226 (253)
T ss_dssp CC-HHHHHH
T ss_pred CC-HHHHHH
Confidence 74 344444
No 31
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=98.03 E-value=4.4e-06 Score=69.44 Aligned_cols=86 Identities=20% Similarity=0.226 Sum_probs=53.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHH--HhhccCccEEEEcccccccCcccccccchh
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK--YFNRIKWQYLILDEAQAIVDINVYSYLNDI 84 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~--~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~ 84 (190)
++++..++|........... ..++|+|+|++.+..... .+....+++||+||||++.+..
T Consensus 117 ~~~~~~~~g~~~~~~~~~~~----------~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~-------- 178 (394)
T 1fuu_A 117 DIKVHACIGGTSFVEDAEGL----------RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSG-------- 178 (394)
T ss_dssp CCCEEEECSSCCHHHHHHHH----------HHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTT--------
T ss_pred CeeEEEEeCCCchHHHHhhc----------CCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCC--------
Confidence 46677777754332222111 247899999999876443 1223468999999999985411
Q ss_pred hhhhhHHHHHHhcCC-cCcEEEEecCCCC
Q psy13032 85 EREQSMRWKLLLGFS-CRNRLLLSGTPIQ 112 (190)
Q Consensus 85 ~~~~s~~~~~~~~l~-~~~r~lLTgTP~~ 112 (190)
........+..+. ....+++||||-.
T Consensus 179 --~~~~~~~~~~~~~~~~~~i~~SAT~~~ 205 (394)
T 1fuu_A 179 --FKEQIYQIFTLLPPTTQVVLLSATMPN 205 (394)
T ss_dssp --CHHHHHHHHHHSCTTCEEEEECSSCCH
T ss_pred --cHHHHHHHHHhCCCCceEEEEEEecCH
Confidence 2233334444443 4568999999954
No 32
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=98.02 E-value=9.6e-06 Score=65.87 Aligned_cols=86 Identities=17% Similarity=0.171 Sum_probs=53.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHH--hhccCccEEEEcccccccCcccccccchh
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY--FNRIKWQYLILDEAQAIVDINVYSYLNDI 84 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~--l~~~~w~~vIvDEaH~lkn~~~~~~~~~~ 84 (190)
+.++..++|.......... ...++|+|+|++.+...... +.-..|++||+||||++.+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~----------~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~-------- 145 (337)
T 2z0m_A 84 DTKVAEVYGGMPYKAQINR----------VRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMG-------- 145 (337)
T ss_dssp CCCEEEECTTSCHHHHHHH----------HTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTT--------
T ss_pred CCcEEEEECCcchHHHHhh----------cCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccc--------
Confidence 5677777776544332221 13489999999999764332 223468999999999986521
Q ss_pred hhhhhHHHHHHhcCCcC-cEEEEecCCCC
Q psy13032 85 EREQSMRWKLLLGFSCR-NRLLLSGTPIQ 112 (190)
Q Consensus 85 ~~~~s~~~~~~~~l~~~-~r~lLTgTP~~ 112 (190)
........+..+... ..+++||||-.
T Consensus 146 --~~~~~~~~~~~~~~~~~~~~~SAT~~~ 172 (337)
T 2z0m_A 146 --FIDDIKIILAQTSNRKITGLFSATIPE 172 (337)
T ss_dssp --CHHHHHHHHHHCTTCSEEEEEESCCCH
T ss_pred --cHHHHHHHHhhCCcccEEEEEeCcCCH
Confidence 122233334444443 45678999954
No 33
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=97.97 E-value=1.7e-05 Score=66.51 Aligned_cols=87 Identities=17% Similarity=0.212 Sum_probs=53.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHH--hhccCccEEEEcccccccCcccccccchh
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY--FNRIKWQYLILDEAQAIVDINVYSYLNDI 84 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~--l~~~~w~~vIvDEaH~lkn~~~~~~~~~~ 84 (190)
++++..+.|........... ...++|+|+|++.+...... +....+++||+||||++.+..
T Consensus 133 ~~~~~~~~g~~~~~~~~~~~---------~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~-------- 195 (410)
T 2j0s_A 133 NVQCHACIGGTNVGEDIRKL---------DYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKG-------- 195 (410)
T ss_dssp TCCEEEECTTSCHHHHHHHH---------HHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTT--------
T ss_pred CeEEEEEECCCCHHHHHHHh---------hcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhh--------
Confidence 45666666654333322211 12468999999988754332 223468999999999987621
Q ss_pred hhhhhHHHHHHhcCC-cCcEEEEecCCCC
Q psy13032 85 EREQSMRWKLLLGFS-CRNRLLLSGTPIQ 112 (190)
Q Consensus 85 ~~~~s~~~~~~~~l~-~~~r~lLTgTP~~ 112 (190)
........+..+. ....+++||||-.
T Consensus 196 --~~~~~~~i~~~~~~~~~~i~~SAT~~~ 222 (410)
T 2j0s_A 196 --FKEQIYDVYRYLPPATQVVLISATLPH 222 (410)
T ss_dssp --THHHHHHHHTTSCTTCEEEEEESCCCH
T ss_pred --hHHHHHHHHHhCccCceEEEEEcCCCH
Confidence 2334444444553 4568999999953
No 34
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=97.97 E-value=1e-05 Score=63.50 Aligned_cols=71 Identities=17% Similarity=0.220 Sum_probs=45.4
Q ss_pred CCccEEEecHHHHHhcHHH--hhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCC-cCcEEEEecCCCCC
Q psy13032 37 ASFHVVITSYQLVVSDFKY--FNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFS-CRNRLLLSGTPIQN 113 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~~~--l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~-~~~r~lLTgTP~~n 113 (190)
+.++|+|+|++.+...... +.--.+++||+||||++.+.. ........+..+. ....+++|||+- +
T Consensus 148 ~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~----------~~~~l~~i~~~~~~~~~~i~~SAT~~-~ 216 (237)
T 3bor_A 148 EAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRG----------FKDQIYEIFQKLNTSIQVVLLSATMP-T 216 (237)
T ss_dssp CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTT----------CHHHHHHHHHHSCTTCEEEEECSSCC-H
T ss_pred CCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccC----------cHHHHHHHHHhCCCCCeEEEEEEecC-H
Confidence 3489999999988654321 222357899999999885411 2334445555554 345789999984 3
Q ss_pred CHHHH
Q psy13032 114 SMAEL 118 (190)
Q Consensus 114 ~~~el 118 (190)
.+.++
T Consensus 217 ~~~~~ 221 (237)
T 3bor_A 217 DVLEV 221 (237)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 34443
No 35
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=97.95 E-value=2.5e-05 Score=65.23 Aligned_cols=87 Identities=15% Similarity=0.147 Sum_probs=53.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHH--hhccCccEEEEcccccccCcccccccchh
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY--FNRIKWQYLILDEAQAIVDINVYSYLNDI 84 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~--l~~~~w~~vIvDEaH~lkn~~~~~~~~~~ 84 (190)
++++..+.|....+..... ....++|+|+|++.+...... ..-..+++||+||||++.+..
T Consensus 117 ~~~~~~~~g~~~~~~~~~~---------~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~-------- 179 (400)
T 1s2m_A 117 GISCMVTTGGTNLRDDILR---------LNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRD-------- 179 (400)
T ss_dssp TCCEEEECSSSCHHHHHHH---------TTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHH--------
T ss_pred CceEEEEeCCcchHHHHHH---------hcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhc--------
Confidence 4667777776544433222 125689999999998654322 122358999999999987611
Q ss_pred hhhhhHHHHHHhcCC-cCcEEEEecCCCC
Q psy13032 85 EREQSMRWKLLLGFS-CRNRLLLSGTPIQ 112 (190)
Q Consensus 85 ~~~~s~~~~~~~~l~-~~~r~lLTgTP~~ 112 (190)
........+..+. ....+++|||+-.
T Consensus 180 --~~~~~~~i~~~~~~~~~~i~lSAT~~~ 206 (400)
T 1s2m_A 180 --FKTIIEQILSFLPPTHQSLLFSATFPL 206 (400)
T ss_dssp --HHHHHHHHHTTSCSSCEEEEEESCCCH
T ss_pred --hHHHHHHHHHhCCcCceEEEEEecCCH
Confidence 1122222333333 4567999999853
No 36
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=97.93 E-value=1.2e-05 Score=62.50 Aligned_cols=92 Identities=17% Similarity=0.255 Sum_probs=51.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHH--hhccCccEEEEcccccccCcccccccch
Q psy13032 6 PDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY--FNRIKWQYLILDEAQAIVDINVYSYLND 83 (190)
Q Consensus 6 p~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~--l~~~~w~~vIvDEaH~lkn~~~~~~~~~ 83 (190)
+++++..+.|........... ...++|+|+|++.+...... +.--.+++||+||||++.+..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~------- 183 (228)
T 3iuy_A 120 KGLKSICIYGGRNRNGQIEDI---------SKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDME------- 183 (228)
T ss_dssp TTCCEEEECC------CHHHH---------HSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTT-------
T ss_pred cCceEEEEECCCChHHHHHHh---------cCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccc-------
Confidence 356666666654333221111 13479999999998763321 112357899999999986521
Q ss_pred hhhhhhHHHHHHhcCC-cCcEEEEecCCCCCCHHH
Q psy13032 84 IEREQSMRWKLLLGFS-CRNRLLLSGTPIQNSMAE 117 (190)
Q Consensus 84 ~~~~~s~~~~~~~~l~-~~~r~lLTgTP~~n~~~e 117 (190)
-.......+..+. ....+++|||.- +.+.+
T Consensus 184 ---~~~~~~~i~~~~~~~~~~l~~SAT~~-~~~~~ 214 (228)
T 3iuy_A 184 ---FEPQIRKILLDVRPDRQTVMTSATWP-DTVRQ 214 (228)
T ss_dssp ---CHHHHHHHHHHSCSSCEEEEEESCCC-HHHHH
T ss_pred ---hHHHHHHHHHhCCcCCeEEEEEeeCC-HHHHH
Confidence 2233334444554 345789999963 33444
No 37
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=97.92 E-value=1.6e-05 Score=75.20 Aligned_cols=63 Identities=21% Similarity=0.122 Sum_probs=44.3
Q ss_pred CCccEEEecHHHHHhcHHHh----hccCccEEEEcccccccCcccccccchhhhhhhHHHHHH-hcCCcCcEEEEecCCC
Q psy13032 37 ASFHVVITSYQLVVSDFKYF----NRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLL-LGFSCRNRLLLSGTPI 111 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~~~l----~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~-~~l~~~~r~lLTgTP~ 111 (190)
...+|+|||++.+....+.. .--.+++||+||||++.. ...++.+ ..++...++++||||.
T Consensus 374 ~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~--------------~~~~~~I~~~~p~a~~lgfTATP~ 439 (1038)
T 2w00_A 374 DDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF--------------GEAQKNLKKKFKRYYQFGFTGTPI 439 (1038)
T ss_dssp SSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH--------------HHHHHHHHHHCSSEEEEEEESSCC
T ss_pred CCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc--------------hHHHHHHHHhCCcccEEEEeCCcc
Confidence 45799999999998754321 112688999999999843 2223333 4456678999999998
Q ss_pred CC
Q psy13032 112 QN 113 (190)
Q Consensus 112 ~n 113 (190)
..
T Consensus 440 ~~ 441 (1038)
T 2w00_A 440 FP 441 (1038)
T ss_dssp CS
T ss_pred cc
Confidence 63
No 38
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=97.89 E-value=4.6e-06 Score=76.80 Aligned_cols=86 Identities=24% Similarity=0.312 Sum_probs=52.9
Q ss_pred CCeEEEEeCCHHH--HHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEcccccccCcccccccchh
Q psy13032 7 DFKVVPYWGSPQE--RKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYSYLNDI 84 (190)
Q Consensus 7 ~l~v~~~~G~~~~--r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~ 84 (190)
++++..++|+... +...... ...+.++|+|+|++.+... +.-..+++||+||+|++..
T Consensus 445 gi~v~~l~G~~~~~~r~~~~~~-------l~~g~~~IvVgT~~ll~~~---~~~~~l~lVVIDEaHr~g~---------- 504 (780)
T 1gm5_A 445 NIHVALLIGATTPSEKEKIKSG-------LRNGQIDVVIGTHALIQED---VHFKNLGLVIIDEQHRFGV---------- 504 (780)
T ss_dssp SCCEEECCSSSCHHHHHHHHHH-------HHSSCCCEEEECTTHHHHC---CCCSCCCEEEEESCCCC------------
T ss_pred CceEEEEeCCCCHHHHHHHHHH-------HhcCCCCEEEECHHHHhhh---hhccCCceEEecccchhhH----------
Confidence 5788888887533 3222221 1235689999999888543 2234679999999999854
Q ss_pred hhhhhHHHHHHhcCCcCcEEEEecCCCCCCHH
Q psy13032 85 EREQSMRWKLLLGFSCRNRLLLSGTPIQNSMA 116 (190)
Q Consensus 85 ~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~~~ 116 (190)
.. +............++|||||.+..+.
T Consensus 505 --~q--r~~l~~~~~~~~vL~mSATp~p~tl~ 532 (780)
T 1gm5_A 505 --KQ--REALMNKGKMVDTLVMSATPIPRSMA 532 (780)
T ss_dssp -------CCCCSSSSCCCEEEEESSCCCHHHH
T ss_pred --HH--HHHHHHhCCCCCEEEEeCCCCHHHHH
Confidence 11 11111111346789999999875544
No 39
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=97.81 E-value=3.1e-05 Score=68.08 Aligned_cols=86 Identities=16% Similarity=0.118 Sum_probs=54.9
Q ss_pred CCccEEEecHHHHHhc--HHHhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCC
Q psy13032 37 ASFHVVITSYQLVVSD--FKYFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNS 114 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~--~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~ 114 (190)
+.++++++|++.+... .+.+....+++||+||||.+..+...-.. ...........+.....++|||||....
T Consensus 114 ~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~-----~~~~l~~l~~~~~~~~~i~lSAT~~~~~ 188 (523)
T 1oyw_A 114 GQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRP-----EYAALGQLRQRFPTLPFMALTATADDTT 188 (523)
T ss_dssp TCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCH-----HHHGGGGHHHHCTTSCEEEEESCCCHHH
T ss_pred CCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHH-----HHHHHHHHHHhCCCCCEEEEeCCCCHHH
Confidence 5689999999998643 23455568899999999999653210000 0111112223344567899999998877
Q ss_pred HHHHHHHHHhhCC
Q psy13032 115 MAELWALLHFIMP 127 (190)
Q Consensus 115 ~~el~~ll~fl~p 127 (190)
..++...+.+-.|
T Consensus 189 ~~~i~~~l~~~~~ 201 (523)
T 1oyw_A 189 RQDIVRLLGLNDP 201 (523)
T ss_dssp HHHHHHHHTCCSC
T ss_pred HHHHHHHhCCCCC
Confidence 7777766654333
No 40
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=97.81 E-value=3.3e-05 Score=73.94 Aligned_cols=86 Identities=16% Similarity=0.189 Sum_probs=54.9
Q ss_pred CCeEEEEeCC--HHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEcccccccCcccccccchh
Q psy13032 7 DFKVVPYWGS--PQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYSYLNDI 84 (190)
Q Consensus 7 ~l~v~~~~G~--~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~ 84 (190)
++++..++|. ..++....... ..+.+||+|+|++.+.... .--.+++||+||+|++..
T Consensus 680 ~i~v~~l~~~~~~~~~~~~~~~l-------~~g~~dIvV~T~~ll~~~~---~~~~l~lvIiDEaH~~g~---------- 739 (1151)
T 2eyq_A 680 PVRIEMISRFRSAKEQTQILAEV-------AEGKIDILIGTHKLLQSDV---KFKDLGLLIVDEEHRFGV---------- 739 (1151)
T ss_dssp TCCEEEESTTSCHHHHHHHHHHH-------HTTCCSEEEECTHHHHSCC---CCSSEEEEEEESGGGSCH----------
T ss_pred CCeEEEEeCCCCHHHHHHHHHHH-------hcCCCCEEEECHHHHhCCc---cccccceEEEechHhcCh----------
Confidence 3567777763 33433333211 2356899999999886542 224689999999999854
Q ss_pred hhhhhHHHHHHhcCC-cCcEEEEecCCCCCCHHH
Q psy13032 85 EREQSMRWKLLLGFS-CRNRLLLSGTPIQNSMAE 117 (190)
Q Consensus 85 ~~~~s~~~~~~~~l~-~~~r~lLTgTP~~n~~~e 117 (190)
... ..+..+. ....++|||||.++.+..
T Consensus 740 --~~~---~~l~~l~~~~~vl~lSATp~p~~l~~ 768 (1151)
T 2eyq_A 740 --RHK---ERIKAMRANVDILTLTATPIPRTLNM 768 (1151)
T ss_dssp --HHH---HHHHHHHTTSEEEEEESSCCCHHHHH
T ss_pred --HHH---HHHHHhcCCCCEEEEcCCCChhhHHH
Confidence 222 2233333 456899999998775543
No 41
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=97.80 E-value=3.7e-05 Score=61.38 Aligned_cols=70 Identities=17% Similarity=0.298 Sum_probs=44.8
Q ss_pred CccEEEecHHHHHhcHHHhh---ccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCC-cCcEEEEecCCCCC
Q psy13032 38 SFHVVITSYQLVVSDFKYFN---RIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFS-CRNRLLLSGTPIQN 113 (190)
Q Consensus 38 ~~dvvitsy~~~~~~~~~l~---~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~-~~~r~lLTgTP~~n 113 (190)
.++|+|+|.+.+........ --.+++||+||||++-+.. -.......+..+. ....+++|||+- +
T Consensus 176 ~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~----------~~~~l~~i~~~~~~~~q~l~~SAT~~-~ 244 (262)
T 3ly5_A 176 GINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVG----------FEEELKQIIKLLPTRRQTMLFSATQT-R 244 (262)
T ss_dssp CCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTT----------CHHHHHHHHHHSCSSSEEEEECSSCC-H
T ss_pred CCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhh----------HHHHHHHHHHhCCCCCeEEEEEecCC-H
Confidence 37999999998876443221 2347899999999986521 2223333444453 355799999985 4
Q ss_pred CHHHH
Q psy13032 114 SMAEL 118 (190)
Q Consensus 114 ~~~el 118 (190)
.+.++
T Consensus 245 ~v~~~ 249 (262)
T 3ly5_A 245 KVEDL 249 (262)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 45544
No 42
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=97.79 E-value=5.1e-05 Score=63.59 Aligned_cols=86 Identities=16% Similarity=0.294 Sum_probs=51.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHH--hhccCccEEEEcccccccCcccccccchh
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKY--FNRIKWQYLILDEAQAIVDINVYSYLNDI 84 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~--l~~~~w~~vIvDEaH~lkn~~~~~~~~~~ 84 (190)
++++..++|........... ...++|+|+|++.+...... +.--.+++||+||||++....
T Consensus 129 ~~~~~~~~g~~~~~~~~~~~---------~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~~~~-------- 191 (417)
T 2i4i_A 129 RVRPCVVYGGADIGQQIRDL---------ERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMG-------- 191 (417)
T ss_dssp SCCEEEECSSSCHHHHHHHH---------TTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHHHHHTT--------
T ss_pred CceEEEEECCCCHHHHHHHh---------hCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhHhhccC--------
Confidence 56677777665433322221 13579999999999764432 222357899999999986421
Q ss_pred hhhhhHHHHHHhc--CC---cCcEEEEecCCC
Q psy13032 85 EREQSMRWKLLLG--FS---CRNRLLLSGTPI 111 (190)
Q Consensus 85 ~~~~s~~~~~~~~--l~---~~~r~lLTgTP~ 111 (190)
-.......+.. +. ....+++||||-
T Consensus 192 --~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~ 221 (417)
T 2i4i_A 192 --FEPQIRRIVEQDTMPPKGVRHTMMFSATFP 221 (417)
T ss_dssp --CHHHHHHHHTSSSCCCBTTBEEEEEESCCC
T ss_pred --cHHHHHHHHHhccCCCcCCcEEEEEEEeCC
Confidence 12222223332 21 345799999984
No 43
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=97.78 E-value=3.9e-05 Score=60.25 Aligned_cols=70 Identities=21% Similarity=0.278 Sum_probs=44.3
Q ss_pred CccEEEecHHHHHhcHHH--hhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCC-cCcEEEEecCCCCCC
Q psy13032 38 SFHVVITSYQLVVSDFKY--FNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFS-CRNRLLLSGTPIQNS 114 (190)
Q Consensus 38 ~~dvvitsy~~~~~~~~~--l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~-~~~r~lLTgTP~~n~ 114 (190)
.++|+|+|.+.+...... +.--.++++|+||||++-+.. -.......+..++ ....+++|||+ .+.
T Consensus 152 ~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~----------~~~~~~~i~~~~~~~~q~~~~SAT~-~~~ 220 (242)
T 3fe2_A 152 GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMG----------FEPQIRKIVDQIRPDRQTLMWSATW-PKE 220 (242)
T ss_dssp CCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTT----------CHHHHHHHHTTSCSSCEEEEEESCC-CHH
T ss_pred CCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhC----------cHHHHHHHHHhCCccceEEEEEeec-CHH
Confidence 479999999998754331 112357899999999986521 2233334445553 34578999996 334
Q ss_pred HHHH
Q psy13032 115 MAEL 118 (190)
Q Consensus 115 ~~el 118 (190)
+.++
T Consensus 221 ~~~~ 224 (242)
T 3fe2_A 221 VRQL 224 (242)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 44
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=97.75 E-value=5.4e-05 Score=64.73 Aligned_cols=65 Identities=18% Similarity=0.222 Sum_probs=43.2
Q ss_pred CCccEEEecHHHHHhcHHH--hhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcC---CcCcEEEEecCCC
Q psy13032 37 ASFHVVITSYQLVVSDFKY--FNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGF---SCRNRLLLSGTPI 111 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~~~--l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l---~~~~r~lLTgTP~ 111 (190)
..++|+|+|++.+...... +.-..++++|+||||++.+.. -.....+.+..+ .....+++|||+-
T Consensus 178 ~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~g----------f~~~~~~i~~~~~~~~~~q~l~~SAT~~ 247 (434)
T 2db3_A 178 RGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMG----------FSEDMRRIMTHVTMRPEHQTLMFSATFP 247 (434)
T ss_dssp TCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTT----------THHHHHHHHHCTTSCSSCEEEEEESCCC
T ss_pred cCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccC----------cHHHHHHHHHhcCCCCCceEEEEeccCC
Confidence 4589999999998764331 122357899999999987621 223333344433 3456899999984
No 45
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=97.75 E-value=5.1e-05 Score=59.49 Aligned_cols=74 Identities=14% Similarity=0.202 Sum_probs=44.3
Q ss_pred CCCccEEEecHHHHHhcHHH----hhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcC--CcCcEEEEecC
Q psy13032 36 DASFHVVITSYQLVVSDFKY----FNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGF--SCRNRLLLSGT 109 (190)
Q Consensus 36 ~~~~dvvitsy~~~~~~~~~----l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l--~~~~r~lLTgT 109 (190)
...++|+|+|++.+...... +.--.++++|+||||++...... +........+..+ .....+++|||
T Consensus 147 ~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~~~~SAT 219 (245)
T 3dkp_A 147 SKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKT-------GFRDQLASIFLACTSHKVRRAMFSAT 219 (245)
T ss_dssp CCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC---------CHHHHHHHHHHHCCCTTCEEEEEESS
T ss_pred cCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccc-------cHHHHHHHHHHhcCCCCcEEEEEecc
Confidence 45689999999998764332 11225789999999998541100 0222233333333 23467999999
Q ss_pred CCCCCHHH
Q psy13032 110 PIQNSMAE 117 (190)
Q Consensus 110 P~~n~~~e 117 (190)
+ .+.+.+
T Consensus 220 ~-~~~v~~ 226 (245)
T 3dkp_A 220 F-AYDVEQ 226 (245)
T ss_dssp C-CHHHHH
T ss_pred C-CHHHHH
Confidence 8 334444
No 46
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=97.73 E-value=2.8e-05 Score=64.96 Aligned_cols=67 Identities=21% Similarity=0.164 Sum_probs=42.5
Q ss_pred CCccEEEecHHHHHhcHHH---hhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCC-cCcEEEEecCCCC
Q psy13032 37 ASFHVVITSYQLVVSDFKY---FNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFS-CRNRLLLSGTPIQ 112 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~~~---l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~-~~~r~lLTgTP~~ 112 (190)
...+|+|+|++.+...... +.-..+++||+||||++..... ...........+. ....+++||||-.
T Consensus 142 ~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~---------~~~~~~~~~~~~~~~~~~i~~SAT~~~ 212 (412)
T 3fht_A 142 ISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQG---------HQDQSIRIQRMLPRNCQMLLFSATFED 212 (412)
T ss_dssp CCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTT---------THHHHHHHHHTSCTTCEEEEEESCCCH
T ss_pred CCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCC---------cHHHHHHHHhhCCCCceEEEEEeecCH
Confidence 4579999999999764422 2223689999999998854110 2222233333343 3467999999853
No 47
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=97.60 E-value=8.7e-05 Score=66.23 Aligned_cols=84 Identities=10% Similarity=0.115 Sum_probs=50.5
Q ss_pred CCCCccEEEecHHHHHhc---HHHhh----ccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEe
Q psy13032 35 KDASFHVVITSYQLVVSD---FKYFN----RIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLS 107 (190)
Q Consensus 35 ~~~~~dvvitsy~~~~~~---~~~l~----~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLT 107 (190)
..+.++|+++|++.+... .+.+. ...+++||+||||.+..+...-.. .-.........+.....++||
T Consensus 133 ~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~-----~~~~l~~l~~~~~~~~ii~lS 207 (591)
T 2v1x_A 133 KNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRP-----DYKALGILKRQFPNASLIGLT 207 (591)
T ss_dssp TTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCG-----GGGGGGHHHHHCTTSEEEEEE
T ss_pred ccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccHH-----HHHHHHHHHHhCCCCcEEEEe
Confidence 346789999999988642 22222 237899999999998653211000 111111222234456789999
Q ss_pred cCCCCCCHHHHHHHHH
Q psy13032 108 GTPIQNSMAELWALLH 123 (190)
Q Consensus 108 gTP~~n~~~el~~ll~ 123 (190)
|||-.....++...+.
T Consensus 208 AT~~~~v~~~i~~~l~ 223 (591)
T 2v1x_A 208 ATATNHVLTDAQKILC 223 (591)
T ss_dssp SSCCHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHhC
Confidence 9997665566555443
No 48
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=97.52 E-value=6.6e-05 Score=62.09 Aligned_cols=66 Identities=17% Similarity=0.132 Sum_probs=42.0
Q ss_pred CCccEEEecHHHHHhcHHH--hhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCC-cCcEEEEecCCC
Q psy13032 37 ASFHVVITSYQLVVSDFKY--FNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFS-CRNRLLLSGTPI 111 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~~~--l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~-~~~r~lLTgTP~ 111 (190)
..++|+|+|++.+...... +.-..+++||+||||++.+... ...........+. ....+++||||-
T Consensus 120 ~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~---------~~~~~~~~~~~~~~~~~~i~~SAT~~ 188 (395)
T 3pey_A 120 INAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQG---------LGDQCIRVKRFLPKDTQLVLFSATFA 188 (395)
T ss_dssp BCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTT---------HHHHHHHHHHTSCTTCEEEEEESCCC
T ss_pred CCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccc---------cHHHHHHHHHhCCCCcEEEEEEecCC
Confidence 4689999999998764322 1223689999999999864110 1222222233333 356799999994
No 49
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=97.48 E-value=8.4e-05 Score=60.66 Aligned_cols=67 Identities=21% Similarity=0.176 Sum_probs=41.8
Q ss_pred CCccEEEecHHHHHhcHHH---hhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCC-cCcEEEEecCCCC
Q psy13032 37 ASFHVVITSYQLVVSDFKY---FNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFS-CRNRLLLSGTPIQ 112 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~~~---l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~-~~~r~lLTgTP~~ 112 (190)
..++|+|+|.+.+...... +.--..+++|+||||++-+.. +........+..+. ....+++|+|+-.
T Consensus 209 ~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~---------~~~~~~~~i~~~~~~~~q~i~~SAT~~~ 279 (300)
T 3fmo_B 209 ISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQ---------GHQDQSIRIQRMLPRNCQMLLFSATFED 279 (300)
T ss_dssp CCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHST---------THHHHHHHHHTTSCTTCEEEEEESCCCH
T ss_pred CCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhcc---------CcHHHHHHHHHhCCCCCEEEEEeccCCH
Confidence 5679999999998654422 112257899999999985310 02222333334443 3457899999853
No 50
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=97.47 E-value=9.6e-05 Score=64.48 Aligned_cols=72 Identities=17% Similarity=0.164 Sum_probs=44.1
Q ss_pred CCccEEEecHHHHHhcHHH--hhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCC-cCcEEEEecCCCCC
Q psy13032 37 ASFHVVITSYQLVVSDFKY--FNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFS-CRNRLLLSGTPIQN 113 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~~~--l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~-~~~r~lLTgTP~~n 113 (190)
..++|+|+|++.+...... +.-..+++||+||||++..... ...........+. ....+++||||- +
T Consensus 234 ~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~---------~~~~~~~i~~~~~~~~~~i~lSAT~~-~ 303 (508)
T 3fho_A 234 IDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQG---------LGDQSMRIKHLLPRNTQIVLFSATFS-E 303 (508)
T ss_dssp CCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC-----------CHHHHHHHHHHSCTTCEEEEEESCCS-T
T ss_pred CCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCC---------cHHHHHHHHHhCCcCCeEEEEeCCCC-H
Confidence 3689999999998764321 1223589999999999864110 1222222333343 345699999994 3
Q ss_pred CHHHH
Q psy13032 114 SMAEL 118 (190)
Q Consensus 114 ~~~el 118 (190)
...++
T Consensus 304 ~~~~~ 308 (508)
T 3fho_A 304 RVEKY 308 (508)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 34444
No 51
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=97.45 E-value=0.00012 Score=62.91 Aligned_cols=67 Identities=21% Similarity=0.164 Sum_probs=42.3
Q ss_pred CCccEEEecHHHHHhcHHH---hhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCC-cCcEEEEecCCCC
Q psy13032 37 ASFHVVITSYQLVVSDFKY---FNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFS-CRNRLLLSGTPIQ 112 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~~~---l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~-~~~r~lLTgTP~~ 112 (190)
...+|+|+|++.+...... +.--.+++||+||||++..... ...........+. ....+++||||-.
T Consensus 209 ~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~---------~~~~~~~i~~~~~~~~~~i~~SAT~~~ 279 (479)
T 3fmp_B 209 ISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQG---------HQDQSIRIQRMLPRNCQMLLFSATFED 279 (479)
T ss_dssp CCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTT---------HHHHHHHHHTTSCTTSEEEEEESCCCH
T ss_pred CCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCC---------cHHHHHHHHhhCCccceEEEEeCCCCH
Confidence 3568999999999764422 2223689999999998854110 2222233333333 3457999999953
No 52
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=97.41 E-value=9.2e-05 Score=67.21 Aligned_cols=89 Identities=16% Similarity=0.048 Sum_probs=53.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhh--ccCccEEEEcccccccCcccccccchh
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFN--RIKWQYLILDEAQAIVDINVYSYLNDI 84 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~--~~~w~~vIvDEaH~lkn~~~~~~~~~~ 84 (190)
+++|..++|+..... ...+..+|+|+|++.+......-. --.+++||+||+|.+....
T Consensus 95 g~~v~~~~G~~~~~~------------~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~-------- 154 (720)
T 2zj8_A 95 GLRVAMATGDYDSKD------------EWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRD-------- 154 (720)
T ss_dssp TCCEEEECSCSSCCC------------GGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTT--------
T ss_pred CCEEEEecCCCCccc------------cccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCc--------
Confidence 677888887542211 012468999999999866433211 1256899999999996521
Q ss_pred hhhhhHHHHHHhcCC-cCcEEEEecCCCCCCHHHHH
Q psy13032 85 EREQSMRWKLLLGFS-CRNRLLLSGTPIQNSMAELW 119 (190)
Q Consensus 85 ~~~~s~~~~~~~~l~-~~~r~lLTgTP~~n~~~el~ 119 (190)
........+..++ ....++||||+- +..++-
T Consensus 155 --r~~~~~~ll~~l~~~~~ii~lSATl~--n~~~~~ 186 (720)
T 2zj8_A 155 --RGATLEVILAHMLGKAQIIGLSATIG--NPEELA 186 (720)
T ss_dssp --THHHHHHHHHHHBTTBEEEEEECCCS--CHHHHH
T ss_pred --ccHHHHHHHHHhhcCCeEEEEcCCcC--CHHHHH
Confidence 1222222233333 567899999984 255543
No 53
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=97.33 E-value=0.00018 Score=63.07 Aligned_cols=67 Identities=19% Similarity=0.161 Sum_probs=40.8
Q ss_pred CccEEEecHHHHHhcHHHh---hccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCC-----cCcEEEEecC
Q psy13032 38 SFHVVITSYQLVVSDFKYF---NRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFS-----CRNRLLLSGT 109 (190)
Q Consensus 38 ~~dvvitsy~~~~~~~~~l---~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~-----~~~r~lLTgT 109 (190)
.++|+|+|++.+....... .--.+++||+||||++....-. ..-......+.... ....+++|||
T Consensus 201 ~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~-------~~~~~i~~~l~~~~~~~~~~~~~l~~SAT 273 (563)
T 3i5x_A 201 RPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFR-------DDLETISGILNEKNSKSADNIKTLLFSAT 273 (563)
T ss_dssp CCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTH-------HHHHHHHHHHHHHCSSCTTCCEEEEEESS
T ss_pred CCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchH-------HHHHHHHHhhhhccccCccCceEEEEEcc
Confidence 5799999999987643321 1235789999999998652100 01112222222221 3458999999
Q ss_pred CC
Q psy13032 110 PI 111 (190)
Q Consensus 110 P~ 111 (190)
+-
T Consensus 274 ~~ 275 (563)
T 3i5x_A 274 LD 275 (563)
T ss_dssp CC
T ss_pred CC
Confidence 85
No 54
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=97.32 E-value=0.0005 Score=62.17 Aligned_cols=92 Identities=12% Similarity=0.058 Sum_probs=51.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhh--ccCccEEEEcccccccCcccccccchh
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFN--RIKWQYLILDEAQAIVDINVYSYLNDI 84 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~--~~~w~~vIvDEaH~lkn~~~~~~~~~~ 84 (190)
++++..+.|..... ....+..+|+|+|++.+......-. --.+++||+||+|.+.+.....
T Consensus 95 g~~v~~~~G~~~~~------------~~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~----- 157 (702)
T 2p6r_A 95 GLRIGISTGDYESR------------DEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGA----- 157 (702)
T ss_dssp TCCEEEECSSCBCC------------SSCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHH-----
T ss_pred CCEEEEEeCCCCcc------------hhhccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCccc-----
Confidence 56677777753211 1123578999999998876433211 1256899999999987521100
Q ss_pred hhhhhHHHHHHhcC-CcCcEEEEecCCCCCCHHHHH
Q psy13032 85 EREQSMRWKLLLGF-SCRNRLLLSGTPIQNSMAELW 119 (190)
Q Consensus 85 ~~~~s~~~~~~~~l-~~~~r~lLTgTP~~n~~~el~ 119 (190)
.-......+..+ .....++||||+- +..++-
T Consensus 158 --~~~~ll~~l~~~~~~~~ii~lSATl~--n~~~~~ 189 (702)
T 2p6r_A 158 --TLEILVTKMRRMNKALRVIGLSATAP--NVTEIA 189 (702)
T ss_dssp --HHHHHHHHHHHHCTTCEEEEEECCCT--THHHHH
T ss_pred --HHHHHHHHHHhcCcCceEEEECCCcC--CHHHHH
Confidence 001111112222 3456899999984 355543
No 55
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=97.31 E-value=0.00034 Score=66.68 Aligned_cols=62 Identities=13% Similarity=0.461 Sum_probs=43.8
Q ss_pred CCCeEEEEeCCHHH--HHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEcccccccC
Q psy13032 6 PDFKVVPYWGSPQE--RKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVD 74 (190)
Q Consensus 6 p~l~v~~~~G~~~~--r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn 74 (190)
.++++..++|.... +....... ..+.++|+|+|.+.+......+..-.+++||+||||.+..
T Consensus 147 ~~i~v~~l~Gg~~~~er~~~~~~l-------~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~ 210 (1104)
T 4ddu_A 147 EKVKIFGFYSSMKKEEKEKFEKSF-------EEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLK 210 (1104)
T ss_dssp TTSCEEEECTTCCTTHHHHHHHHH-------HTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTT
T ss_pred CCCeEEEEeCCCCHHHHHHHHHHH-------hCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCcccc
Confidence 46789999886533 22211111 1246899999999998877766666899999999998753
No 56
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=97.30 E-value=0.00025 Score=62.70 Aligned_cols=68 Identities=19% Similarity=0.163 Sum_probs=41.7
Q ss_pred CccEEEecHHHHHhcHHHh---hccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCC-----cCcEEEEecC
Q psy13032 38 SFHVVITSYQLVVSDFKYF---NRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFS-----CRNRLLLSGT 109 (190)
Q Consensus 38 ~~dvvitsy~~~~~~~~~l---~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~-----~~~r~lLTgT 109 (190)
.++|+|+|++.+....... .--.+++||+||||++....-. ..-..+...+.... ....+++|||
T Consensus 150 ~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~-------~~~~~i~~~l~~~~~~~~~~~~~l~~SAT 222 (579)
T 3sqw_A 150 RPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFR-------DDLETISGILNEKNSKSADNIKTLLFSAT 222 (579)
T ss_dssp CCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTH-------HHHHHHHHHHHHHCSSCTTCCEEEEEESS
T ss_pred CCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCH-------HHHHHHHHHhhhhhcccccCceEEEEecc
Confidence 5799999999997644322 2235789999999998752100 01122222222222 3468999999
Q ss_pred CCC
Q psy13032 110 PIQ 112 (190)
Q Consensus 110 P~~ 112 (190)
+-.
T Consensus 223 ~~~ 225 (579)
T 3sqw_A 223 LDD 225 (579)
T ss_dssp CCT
T ss_pred CCh
Confidence 853
No 57
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=97.30 E-value=0.0003 Score=66.37 Aligned_cols=92 Identities=15% Similarity=0.115 Sum_probs=54.4
Q ss_pred cCCCCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHh--hccCccEEEEcccccccCccccccc
Q psy13032 4 FVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYF--NRIKWQYLILDEAQAIVDINVYSYL 81 (190)
Q Consensus 4 ~~p~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l--~~~~w~~vIvDEaH~lkn~~~~~~~ 81 (190)
+.+++++..++|... .....+++|+|.+.+......- .-..+++||+||||++.+..
T Consensus 105 ~~~~~~v~~l~G~~~----------------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~----- 163 (997)
T 4a4z_A 105 TFDDVNIGLITGDVQ----------------INPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQD----- 163 (997)
T ss_dssp TC--CCEEEECSSCE----------------ECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTC-----
T ss_pred HcCCCeEEEEeCCCc----------------cCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccc-----
Confidence 334566666666532 1256899999999997643321 12357899999999987632
Q ss_pred chhhhhhhHHHHHHhcCC-cCcEEEEecCCCCCCHHHHHHHHH
Q psy13032 82 NDIEREQSMRWKLLLGFS-CRNRLLLSGTPIQNSMAELWALLH 123 (190)
Q Consensus 82 ~~~~~~~s~~~~~~~~l~-~~~r~lLTgTP~~n~~~el~~ll~ 123 (190)
........+..+. ....++|||||- +..++-..+.
T Consensus 164 -----~g~~~e~ii~~l~~~v~iIlLSAT~~--n~~ef~~~l~ 199 (997)
T 4a4z_A 164 -----RGVVWEEVIIMLPQHVKFILLSATVP--NTYEFANWIG 199 (997)
T ss_dssp -----TTCCHHHHHHHSCTTCEEEEEECCCT--THHHHHHHHH
T ss_pred -----hHHHHHHHHHhcccCCCEEEEcCCCC--ChHHHHHHHh
Confidence 1111223333443 456799999974 2334444443
No 58
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.04 E-value=0.00089 Score=52.28 Aligned_cols=68 Identities=10% Similarity=0.039 Sum_probs=40.5
Q ss_pred CCccEEEecHHHHHhcHHHhhccCccEEEEcccccccCcccccccchhhhhh-hHHHHHHhcCCcCcEEEEecCCCCCC
Q psy13032 37 ASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQ-SMRWKLLLGFSCRNRLLLSGTPIQNS 114 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~-s~~~~~~~~l~~~~r~lLTgTP~~n~ 114 (190)
...+|+|+|.+.+...... .--..++||+||||++.- ... .. ......+........+++|+|+-...
T Consensus 154 ~~~~Ivv~Tpg~l~~~l~~-~l~~~~~lVlDEah~~~~-~~~--------~~~~~l~~i~~~~~~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 154 PHASIMFCTVGVLLRKLEA-GIRGISHVIVDEIHERDI-NTD--------FLLVVLRDVVQAYPEVRIVLMSATIDTSM 222 (235)
T ss_dssp SSSEEEEEEHHHHHHHHHH-CCTTCCEEEECCTTSCCH-HHH--------HHHHHHHHHHHHCTTSEEEEEECSSCCHH
T ss_pred CCCeEEEECHHHHHHHHHh-hhcCCcEEEEECCccCCc-chH--------HHHHHHHHHHhhCCCCeEEEEecCCCHHH
Confidence 4578999999888765433 123578999999998411 000 01 11122222234456799999985443
No 59
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=97.01 E-value=0.0011 Score=59.88 Aligned_cols=71 Identities=21% Similarity=0.254 Sum_probs=44.8
Q ss_pred CccEEEecHHHHHhcHHHhh--ccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCCH
Q psy13032 38 SFHVVITSYQLVVSDFKYFN--RIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNSM 115 (190)
Q Consensus 38 ~~dvvitsy~~~~~~~~~l~--~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~~ 115 (190)
..+|+|+|++.+......-. --.+++||+||+|.+.+.. -.......+..++....++||||+- +.
T Consensus 121 ~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~----------~~~~l~~i~~~~~~~~ii~lSATl~--n~ 188 (715)
T 2va8_A 121 NYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPE----------RGPVVESVTIRAKRRNLLALSATIS--NY 188 (715)
T ss_dssp GCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTT----------THHHHHHHHHHHHTSEEEEEESCCT--TH
T ss_pred CCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcc----------cchHHHHHHHhcccCcEEEEcCCCC--CH
Confidence 68999999998876433211 1256899999999986421 1122222333344677899999995 25
Q ss_pred HHHHH
Q psy13032 116 AELWA 120 (190)
Q Consensus 116 ~el~~ 120 (190)
.++-.
T Consensus 189 ~~~~~ 193 (715)
T 2va8_A 189 KQIAK 193 (715)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 60
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=96.98 E-value=0.002 Score=60.84 Aligned_cols=74 Identities=14% Similarity=0.102 Sum_probs=45.9
Q ss_pred CCccEEEecHHHHHhcHHH--hhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCC-cCcEEEEecCCCCC
Q psy13032 37 ASFHVVITSYQLVVSDFKY--FNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFS-CRNRLLLSGTPIQN 113 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~~~--l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~-~~~r~lLTgTP~~n 113 (190)
..++|+|+|++.+...... ..--.+++||+||||++.+.. ........+..+. ....++||||+ .|
T Consensus 167 ~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~----------rg~~~e~il~~l~~~~~il~LSATi-~n 235 (1010)
T 2xgj_A 167 PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKE----------RGVVWEETIILLPDKVRYVFLSATI-PN 235 (1010)
T ss_dssp TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTT----------THHHHHHHHHHSCTTCEEEEEECCC-TT
T ss_pred CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccc----------hhHHHHHHHHhcCCCCeEEEEcCCC-CC
Confidence 4679999999998764321 111367899999999997621 1222223333443 45689999995 33
Q ss_pred CHHHHHHHH
Q psy13032 114 SMAELWALL 122 (190)
Q Consensus 114 ~~~el~~ll 122 (190)
..++-..+
T Consensus 236 -~~e~a~~l 243 (1010)
T 2xgj_A 236 -AMEFAEWI 243 (1010)
T ss_dssp -HHHHHHHH
T ss_pred -HHHHHHHH
Confidence 44444433
No 61
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=96.69 E-value=0.0035 Score=59.79 Aligned_cols=75 Identities=15% Similarity=0.126 Sum_probs=46.1
Q ss_pred CCccEEEecHHHHHhcHHHh--hccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCC-cCcEEEEecCCCCC
Q psy13032 37 ASFHVVITSYQLVVSDFKYF--NRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFS-CRNRLLLSGTPIQN 113 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~~~l--~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~-~~~r~lLTgTP~~n 113 (190)
+.++|+|+|.+.+......- .--.+++||+||||++.+.. ........+..+. ....++|||| +.|
T Consensus 265 ~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~----------rg~~~e~ii~~l~~~~qvl~lSAT-ipn 333 (1108)
T 3l9o_A 265 PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKE----------RGVVWEETIILLPDKVRYVFLSAT-IPN 333 (1108)
T ss_dssp CSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHH----------HHHHHHHHHHHSCTTSEEEEEECS-CSS
T ss_pred CCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccc----------hHHHHHHHHHhcCCCceEEEEcCC-CCC
Confidence 56899999999887643211 01147899999999997621 1222233333443 4567999999 444
Q ss_pred CHHHHHHHHH
Q psy13032 114 SMAELWALLH 123 (190)
Q Consensus 114 ~~~el~~ll~ 123 (190)
. .++...+.
T Consensus 334 ~-~e~a~~l~ 342 (1108)
T 3l9o_A 334 A-MEFAEWIC 342 (1108)
T ss_dssp C-HHHHHHHH
T ss_pred H-HHHHHHHH
Confidence 4 44444443
No 62
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=96.09 E-value=0.01 Score=59.03 Aligned_cols=54 Identities=17% Similarity=0.110 Sum_probs=37.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHH------HhhccCccEEEEcccccccC
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK------YFNRIKWQYLILDEAQAIVD 74 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~------~l~~~~w~~vIvDEaH~lkn 74 (190)
+++|..+.|+........ .++||+|+|.|.+..... .+. ...+||+||+|.+..
T Consensus 1001 g~~V~~ltGd~~~~~~~~------------~~~~IiV~TPEkld~llr~~~~~~~l~--~v~lvViDE~H~l~d 1060 (1724)
T 4f92_B 1001 NKKVVLLTGETSTDLKLL------------GKGNIIISTPEKWDILSRRWKQRKNVQ--NINLFVVDEVHLIGG 1060 (1724)
T ss_dssp CCCEEECCSCHHHHHHHH------------HHCSEEEECHHHHHHHHTTTTTCHHHH--SCSEEEECCGGGGGS
T ss_pred CCEEEEEECCCCcchhhc------------CCCCEEEECHHHHHHHHhCcccccccc--eeeEEEeechhhcCC
Confidence 678889999865443332 246899999998743221 122 457999999999975
No 63
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=95.89 E-value=0.0057 Score=58.05 Aligned_cols=34 Identities=24% Similarity=0.653 Sum_probs=28.5
Q ss_pred ccEEEecHHHHHhcHHHhhccCccEEEEcccccccC
Q psy13032 39 FHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVD 74 (190)
Q Consensus 39 ~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn 74 (190)
++|+|+|.+.+......+. .+++||+||||++.+
T Consensus 156 ~~IlV~TP~~L~~~l~~L~--~l~~lViDEah~~l~ 189 (1054)
T 1gku_B 156 FKIVITTTQFLSKHYRELG--HFDFIFVDDVDAILK 189 (1054)
T ss_dssp CSEEEEEHHHHHHCSTTSC--CCSEEEESCHHHHHT
T ss_pred CCEEEEcHHHHHHHHHHhc--cCCEEEEeChhhhhh
Confidence 8999999999987655433 688999999999876
No 64
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=95.65 E-value=0.01 Score=53.62 Aligned_cols=65 Identities=17% Similarity=0.079 Sum_probs=40.2
Q ss_pred CCCccEEEecHHHHHhcHHHhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCc---CcEEEEecCCCC
Q psy13032 36 DASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSC---RNRLLLSGTPIQ 112 (190)
Q Consensus 36 ~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~---~~r~lLTgTP~~ 112 (190)
....+|+|+|.+.+..+. .+....+++||+||||.+... ........+..+.. ...+++||||-.
T Consensus 295 ~~~~~IlV~TPGrLl~~~-~l~l~~l~~lVlDEAH~l~~~-----------~~~~l~~Il~~l~~~~~~llil~SAT~~~ 362 (666)
T 3o8b_A 295 TTGAPVTYSTYGKFLADG-GCSGGAYDIIICDECHSTDST-----------TILGIGTVLDQAETAGARLVVLATATPPG 362 (666)
T ss_dssp CCCCSEEEEEHHHHHHTT-SCCTTSCSEEEETTTTCCSHH-----------HHHHHHHHHHHTTTTTCSEEEEEESSCTT
T ss_pred cCCCCEEEECcHHHHhCC-CcccCcccEEEEccchhcCcc-----------HHHHHHHHHHhhhhcCCceEEEECCCCCc
Confidence 356899999999985432 223336899999999876420 11122333333332 235778999965
No 65
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=95.63 E-value=0.014 Score=50.05 Aligned_cols=62 Identities=15% Similarity=0.169 Sum_probs=37.4
Q ss_pred CccEEEecHHHHHhcHHHhhc-cCccEEEEcccccccCcccccccchhhhhhhHH-HHHHh---cCCcCcEEEEecCCCC
Q psy13032 38 SFHVVITSYQLVVSDFKYFNR-IKWQYLILDEAQAIVDINVYSYLNDIEREQSMR-WKLLL---GFSCRNRLLLSGTPIQ 112 (190)
Q Consensus 38 ~~dvvitsy~~~~~~~~~l~~-~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~-~~~~~---~l~~~~r~lLTgTP~~ 112 (190)
...+.+++.+.+......... -.+++||+||||++ + ..... ...+. .......+++||||-.
T Consensus 87 ~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~-~------------~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~ 153 (451)
T 2jlq_A 87 REIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFT-D------------PCSVAARGYISTRVEMGEAAAIFMTATPPG 153 (451)
T ss_dssp SCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCC-S------------HHHHHHHHHHHHHHHTTSCEEEEECSSCTT
T ss_pred CceEEEEChHHHHHHhhCcccccCCCEEEEeCCccC-C------------cchHHHHHHHHHhhcCCCceEEEEccCCCc
Confidence 446878888877654322211 25799999999987 3 22221 11111 1234567999999954
No 66
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=95.37 E-value=0.014 Score=49.78 Aligned_cols=62 Identities=11% Similarity=0.053 Sum_probs=35.2
Q ss_pred ccEEEecHHHHHhcHHH-hhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcC---CcCcEEEEecCCCC
Q psy13032 39 FHVVITSYQLVVSDFKY-FNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGF---SCRNRLLLSGTPIQ 112 (190)
Q Consensus 39 ~dvvitsy~~~~~~~~~-l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l---~~~~r~lLTgTP~~ 112 (190)
..+.+.+.+.+...... ..--.+++||+||+|++.. ........+..+ .....+++||||..
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~~~------------~~~~~~~~l~~~~~~~~~~~l~~SAT~~~ 136 (431)
T 2v6i_A 71 EIVDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDP------------ASVAARGYIETRVSMGDAGAIFMTATPPG 136 (431)
T ss_dssp CSEEEEEHHHHHHHHHHTCCCCCCSEEEEESTTCCSH------------HHHHHHHHHHHHHHTTSCEEEEEESSCTT
T ss_pred ceEEEEchHHHHHHHhcCccccCCCEEEEeCCccCCc------------cHHHHHHHHHHHhhCCCCcEEEEeCCCCc
Confidence 34555566666432211 1123578999999999832 111112222222 35678999999986
No 67
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=95.14 E-value=0.021 Score=56.79 Aligned_cols=75 Identities=13% Similarity=-0.003 Sum_probs=40.9
Q ss_pred CCccEEEecHHHHHhc------HHHhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcC-CcCcEEEEecC
Q psy13032 37 ASFHVVITSYQLVVSD------FKYFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGF-SCRNRLLLSGT 109 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~------~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l-~~~~r~lLTgT 109 (190)
..+||+|||+|.+..- ...+. ...+||+||+|.+.+. .+ .-++..-+...+.+... ...+.++||||
T Consensus 180 ~~~~IlVtTpEkld~llr~~~~~~~l~--~v~~vIiDEvH~l~d~-RG---~~lE~~l~rl~~~~~~~~~~~riI~LSAT 253 (1724)
T 4f92_B 180 SATQIIVCTPEKWDIITRKGGERTYTQ--LVRLIILDEIHLLHDD-RG---PVLEALVARAIRNIEMTQEDVRLIGLSAT 253 (1724)
T ss_dssp GGCSEEEECHHHHHHHTTSSTTHHHHT--TEEEEEETTGGGGGST-TH---HHHHHHHHHHHHHHHHHTCCCEEEEEECS
T ss_pred CCCCEEEECHHHHHHHHcCCccchhhc--CcCEEEEecchhcCCc-cH---HHHHHHHHHHHHHHHhCCCCCcEEEEecc
Confidence 4589999999976421 12232 3578999999998651 00 00000011111111122 23467999999
Q ss_pred CCCCCHHHHH
Q psy13032 110 PIQNSMAELW 119 (190)
Q Consensus 110 P~~n~~~el~ 119 (190)
- .+++|+-
T Consensus 254 l--~N~~dvA 261 (1724)
T 4f92_B 254 L--PNYEDVA 261 (1724)
T ss_dssp C--TTHHHHH
T ss_pred c--CCHHHHH
Confidence 4 3566653
No 68
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=94.90 E-value=0.013 Score=51.57 Aligned_cols=39 Identities=13% Similarity=0.229 Sum_probs=28.2
Q ss_pred CCCccEEEecHHHHHhcHH--Hhh-------ccCccEEEEcccccccC
Q psy13032 36 DASFHVVITSYQLVVSDFK--YFN-------RIKWQYLILDEAQAIVD 74 (190)
Q Consensus 36 ~~~~dvvitsy~~~~~~~~--~l~-------~~~w~~vIvDEaH~lkn 74 (190)
...+||||+||+.+..+.. .+. ....++||+||||++-+
T Consensus 142 ~~~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~ 189 (540)
T 2vl7_A 142 LKDKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLE 189 (540)
T ss_dssp GGGCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGG
T ss_pred hhcCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHH
Confidence 3567999999999976432 221 13467999999999944
No 69
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=94.67 E-value=0.016 Score=50.92 Aligned_cols=41 Identities=15% Similarity=0.135 Sum_probs=29.5
Q ss_pred CCccEEEecHHHHHhcHHH--h-hccCccEEEEcccccccCcccc
Q psy13032 37 ASFHVVITSYQLVVSDFKY--F-NRIKWQYLILDEAQAIVDINVY 78 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~~~--l-~~~~w~~vIvDEaH~lkn~~~~ 78 (190)
..+||||+||..+...... + .....+++|+||||++-+ ...
T Consensus 147 ~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~ 190 (551)
T 3crv_A 147 YKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNE 190 (551)
T ss_dssp GGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGG
T ss_pred hcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHH
Confidence 4679999999999865311 1 113556899999999987 533
No 70
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=94.64 E-value=0.034 Score=47.45 Aligned_cols=41 Identities=24% Similarity=0.401 Sum_probs=26.2
Q ss_pred CccEEEEcccccccCcccccccchhhhhhh-HHHHHHh---cCCcCcEEEEecCCCCC
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQS-MRWKLLL---GFSCRNRLLLSGTPIQN 113 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s-~~~~~~~---~l~~~~r~lLTgTP~~n 113 (190)
.+++||+||||++ + ... .....+. .......+++|+||..+
T Consensus 99 ~l~~vViDEah~~-~------------~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~ 143 (440)
T 1yks_A 99 NWEVIIMDEAHFL-D------------PASIAARGWAAHRARANESATILMTATPPGT 143 (440)
T ss_dssp CCSEEEETTTTCC-S------------HHHHHHHHHHHHHHHTTSCEEEEECSSCTTC
T ss_pred CccEEEEECcccc-C------------cchHHHHHHHHHHhccCCceEEEEeCCCCch
Confidence 5789999999998 3 211 1111111 12346789999999765
No 71
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=94.07 E-value=0.024 Score=50.72 Aligned_cols=38 Identities=26% Similarity=0.435 Sum_probs=25.9
Q ss_pred CCccEEEecHHHHHhcH---HHhh----ccCccEEEEcccccccC
Q psy13032 37 ASFHVVITSYQLVVSDF---KYFN----RIKWQYLILDEAQAIVD 74 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~---~~l~----~~~w~~vIvDEaH~lkn 74 (190)
..+||||++|..+.... ..+. ...-.+||+||||++-+
T Consensus 174 ~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d 218 (620)
T 4a15_A 174 PDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPD 218 (620)
T ss_dssp GGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHH
T ss_pred hcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHH
Confidence 56899999998765422 1111 12335899999999965
No 72
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=93.71 E-value=0.043 Score=49.61 Aligned_cols=42 Identities=12% Similarity=0.185 Sum_probs=26.4
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcC---CcCcEEEEecCCCCC
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGF---SCRNRLLLSGTPIQN 113 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l---~~~~r~lLTgTP~~n 113 (190)
.+++||+||||++.- ........+..+ .....++||+||...
T Consensus 332 ~l~lvViDEaH~~~~------------~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~ 376 (673)
T 2wv9_A 332 NYNLFVMDEAHFTDP------------ASIAARGYIATRVEAGEAAAIFMTATPPGT 376 (673)
T ss_dssp CCSEEEEESTTCCCH------------HHHHHHHHHHHHHHTTSCEEEEECSSCTTC
T ss_pred cceEEEEeCCcccCc------------cHHHHHHHHHHhccccCCcEEEEcCCCChh
Confidence 579999999999821 111111122222 456789999999754
No 73
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=93.57 E-value=0.057 Score=46.32 Aligned_cols=64 Identities=9% Similarity=0.056 Sum_probs=33.1
Q ss_pred cEEEecHHHHHhcHHH-hhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCC
Q psy13032 40 HVVITSYQLVVSDFKY-FNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQ 112 (190)
Q Consensus 40 dvvitsy~~~~~~~~~-l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~ 112 (190)
.+.+++.+.+...... ..--.+++||+||||++.. ... ..-..............+++||||-.
T Consensus 91 ~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~-~~~--------~~~~~~~~~~~~~~~~~il~SAT~~~ 155 (459)
T 2z83_A 91 IVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDP-ASI--------AARGYIATKVELGEAAAIFMTATPPG 155 (459)
T ss_dssp SEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSH-HHH--------HHHHHHHHHHHTTSCEEEEECSSCTT
T ss_pred EEEEEchHHHHHHhhccccccCCcEEEEECCccCCc-hhh--------HHHHHHHHHhccCCccEEEEEcCCCc
Confidence 3455566655432111 1122579999999998521 000 00011111222345678999999964
No 74
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=93.20 E-value=0.052 Score=48.55 Aligned_cols=64 Identities=11% Similarity=0.066 Sum_probs=36.1
Q ss_pred ccEEEecHHHHHhcHHHh-hccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcC--CcCcEEEEecCCCCC
Q psy13032 39 FHVVITSYQLVVSDFKYF-NRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGF--SCRNRLLLSGTPIQN 113 (190)
Q Consensus 39 ~dvvitsy~~~~~~~~~l-~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l--~~~~r~lLTgTP~~n 113 (190)
..+.+++.+.+....... .--.+++||+||||++.- . ...........+ .....+++||||-..
T Consensus 255 ~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~-~----------~~~~~~~i~~~l~~~~~q~il~SAT~~~~ 321 (618)
T 2whx_A 255 EIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDP-C----------SVAARGYISTRVEMGEAAAIFMTATPPGS 321 (618)
T ss_dssp SCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCCSH-H----------HHHHHHHHHHHHHHTSCEEEEECSSCTTC
T ss_pred ceEEEEChHHHHHHHhccccccCCeEEEEECCCCCCc-c----------HHHHHHHHHHHhcccCccEEEEECCCchh
Confidence 445566777665422111 123679999999999821 0 111122222222 345689999999654
No 75
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=91.11 E-value=0.35 Score=45.29 Aligned_cols=81 Identities=16% Similarity=0.238 Sum_probs=47.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHH-----hcH----HHhhcc---CccEEEEcccccccC
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVV-----SDF----KYFNRI---KWQYLILDEAQAIVD 74 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~-----~~~----~~l~~~---~w~~vIvDEaH~lkn 74 (190)
+++|.+..|+......... ..+||++.|.+.+. ... +.+..- ...++|+||+|.+-.
T Consensus 148 GLsv~~i~Gg~~~~~r~~a-----------y~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLi 216 (997)
T 2ipc_A 148 GLSVGVIQHASTPAERRKA-----------YLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILI 216 (997)
T ss_dssp TCCEEECCTTCCHHHHHHH-----------HTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTT
T ss_pred CCeEEEEeCCCCHHHHHHH-----------cCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHH
Confidence 6778776664322111111 14799999987773 211 112223 678999999998753
Q ss_pred cccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCCHHHHHHHHH
Q psy13032 75 INVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLH 123 (190)
Q Consensus 75 ~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~~~el~~ll~ 123 (190)
. .+..-+++|| |.+.. .++|..++
T Consensus 217 ------------D-----------eartPLIISg-p~~~~-~~lY~~~~ 240 (997)
T 2ipc_A 217 ------------D-----------EARTPLIISG-PAEKA-TDLYYKMA 240 (997)
T ss_dssp ------------S-----------STTSCEEEEE-SCSSC-HHHHHHHH
T ss_pred ------------h-----------CCCCCeeeeC-CCccc-hHHHHHHH
Confidence 1 1223488999 88776 45554444
No 76
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=90.21 E-value=0.7 Score=39.71 Aligned_cols=39 Identities=18% Similarity=0.192 Sum_probs=28.6
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCC
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQN 113 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n 113 (190)
..+++|+|||..+ +.......+..+++ .+++|.|=|-|-
T Consensus 234 ~~d~liiDE~sm~--------------~~~~l~~l~~~~~~-~~vilvGD~~Ql 272 (446)
T 3vkw_A 234 QFKRLFIDEGLML--------------HTGCVNFLVEMSLC-DIAYVYGDTQQI 272 (446)
T ss_dssp CCSEEEEETGGGS--------------CHHHHHHHHHHTTC-SEEEEEECTTSC
T ss_pred cCCEEEEeCcccC--------------CHHHHHHHHHhCCC-CEEEEecCcccc
Confidence 4899999999987 44444444444555 899999988774
No 77
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=89.89 E-value=0.49 Score=43.39 Aligned_cols=65 Identities=12% Similarity=0.074 Sum_probs=38.6
Q ss_pred CCccEEEecHHHHHhcHHH-hhccCccEEEEccccc-ccCcccccccchhhhhhhHHHHHHhcC-CcCcEEEEecCCC
Q psy13032 37 ASFHVVITSYQLVVSDFKY-FNRIKWQYLILDEAQA-IVDINVYSYLNDIEREQSMRWKLLLGF-SCRNRLLLSGTPI 111 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~~~-l~~~~w~~vIvDEaH~-lkn~~~~~~~~~~~~~~s~~~~~~~~l-~~~~r~lLTgTP~ 111 (190)
...+|+++|.+.+.+.... ..-...++||+||+|. .-+.. ..-...+.+... .....+++|+|+-
T Consensus 184 ~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d----------~~~~~l~~l~~~~~~~~iIl~SAT~~ 251 (773)
T 2xau_A 184 NKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATD----------ILMGLLKQVVKRRPDLKIIIMSATLD 251 (773)
T ss_dssp TTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHH----------HHHHHHHHHHHHCTTCEEEEEESCSC
T ss_pred CCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchH----------HHHHHHHHHHHhCCCceEEEEecccc
Confidence 4678999999988764322 1123578999999995 32200 001112222222 3456789999993
No 78
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=89.52 E-value=0.39 Score=42.51 Aligned_cols=40 Identities=28% Similarity=0.383 Sum_probs=32.0
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCC
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQN 113 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n 113 (190)
.+|+|||||||.+ ........+..+....++++.|-|-|.
T Consensus 279 ~~dvlIIDEasml--------------~~~~~~~Ll~~~~~~~~lilvGD~~QL 318 (574)
T 3e1s_A 279 PYDLLIVDEVSMM--------------GDALMLSLLAAVPPGARVLLVGDTDQL 318 (574)
T ss_dssp SCSEEEECCGGGC--------------CHHHHHHHHTTSCTTCEEEEEECTTSC
T ss_pred cCCEEEEcCccCC--------------CHHHHHHHHHhCcCCCEEEEEeccccc
Confidence 6799999999998 344555566677778899999999984
No 79
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=88.68 E-value=0.46 Score=35.45 Aligned_cols=14 Identities=21% Similarity=0.185 Sum_probs=12.3
Q ss_pred CccEEEEccccccc
Q psy13032 60 KWQYLILDEAQAIV 73 (190)
Q Consensus 60 ~w~~vIvDEaH~lk 73 (190)
..++||+||+|.+.
T Consensus 76 ~~dvviIDE~Q~~~ 89 (184)
T 2orw_A 76 DTRGVFIDEVQFFN 89 (184)
T ss_dssp TEEEEEECCGGGSC
T ss_pred CCCEEEEECcccCC
Confidence 47899999999983
No 80
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=84.68 E-value=0.8 Score=40.76 Aligned_cols=59 Identities=12% Similarity=0.206 Sum_probs=38.7
Q ss_pred CCccEEEecHHHHHhcHHHhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCC
Q psy13032 37 ASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQN 113 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n 113 (190)
..++||++|...+.. ..+....||+||||||...-. +.. .+..+....+++|.|=|.|-
T Consensus 318 ~~~~vI~~T~~~~~~--~~l~~~~fd~viIDEAsQ~~e------------~~~----li~l~~~~~~~ilvGD~~QL 376 (624)
T 2gk6_A 318 MNADVICCTCVGAGD--PRLAKMQFRSILIDESTQATE------------PEC----MVPVVLGAKQLILVGDHCQL 376 (624)
T ss_dssp HTCSEEEEETGGGGC--GGGTTCCCSEEEETTGGGSCH------------HHH----HHHHTTTBSEEEEEECTTSC
T ss_pred hcCCEEEEcChhhcc--hhhhcCCCCEEEEecccccCc------------HHH----HHHHHhcCCeEEEecChhcc
Confidence 356888888655432 335567899999999977644 321 12222334689999999883
No 81
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=84.52 E-value=1.1 Score=39.88 Aligned_cols=42 Identities=24% Similarity=0.316 Sum_probs=32.4
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCCH
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNSM 115 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~~ 115 (190)
.++++|||||+.+ ........+..+....+++|.|-|-|--+
T Consensus 262 ~~d~lIIDEAsml--------------~~~~~~~Ll~~l~~~~~liLvGD~~QL~~ 303 (608)
T 1w36_D 262 HLDVLVVDEASMI--------------DLPMMSRLIDALPDHARVIFLGDRDQLAS 303 (608)
T ss_dssp SCSEEEECSGGGC--------------BHHHHHHHHHTCCTTCEEEEEECTTSGGG
T ss_pred CCCEEEEechhhC--------------CHHHHHHHHHhCCCCCEEEEEcchhhcCC
Confidence 6889999999977 33344556667777889999999888654
No 82
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=84.10 E-value=1.3 Score=41.37 Aligned_cols=37 Identities=14% Similarity=0.183 Sum_probs=26.1
Q ss_pred CccEEEecHHHHH-----hcH----HHhhccCccEEEEcccccccC
Q psy13032 38 SFHVVITSYQLVV-----SDF----KYFNRIKWQYLILDEAQAIVD 74 (190)
Q Consensus 38 ~~dvvitsy~~~~-----~~~----~~l~~~~w~~vIvDEaH~lkn 74 (190)
.+||++.|-+.+. ... ..+......++|||||++|-.
T Consensus 200 ~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLi 245 (922)
T 1nkt_A 200 NADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILI 245 (922)
T ss_dssp HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHT
T ss_pred CCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHH
Confidence 3799999977763 221 233445789999999998863
No 83
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=80.12 E-value=3.7 Score=34.44 Aligned_cols=59 Identities=8% Similarity=0.214 Sum_probs=37.6
Q ss_pred cHHHhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhc-C--CcCcEEEEecCCCCCCHHHHHHHHHhh
Q psy13032 52 DFKYFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLG-F--SCRNRLLLSGTPIQNSMAELWALLHFI 125 (190)
Q Consensus 52 ~~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~-l--~~~~r~lLTgTP~~n~~~el~~ll~fl 125 (190)
+...+.....+++|+||+|.+++ .. ..+.++.. + ....++++++||-..+ .+|.+..-.
T Consensus 265 ~~~slrG~~~~~viiDE~a~~~~------------~~-el~~al~~~ls~~~~~kiiiiSTP~g~n--~fy~l~~~a 326 (385)
T 2o0j_A 265 SPDAVRGNSFAMIYIEDCAFIPN------------FH-DSWLAIQPVISSGRRSKIIITTTPNGLN--HFYDIWTAA 326 (385)
T ss_dssp SHHHHHTSCCSEEEEESGGGSTT------------HH-HHHHHHHHHHHSTTCCEEEEEECCCSSS--HHHHHHHHH
T ss_pred CCCCccCCCCCEEEechhhhcCC------------CH-HHHHHHHHHhhcCCCCcEEEEeCCCCch--hHHHHHHHH
Confidence 44566777889999999999976 21 22222222 2 2346888999996554 556655543
No 84
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=79.74 E-value=0.73 Score=41.12 Aligned_cols=58 Identities=17% Similarity=0.263 Sum_probs=37.7
Q ss_pred CccEEEecHHHHHhc--HHHhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCC
Q psy13032 38 SFHVVITSYQLVVSD--FKYFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQ 112 (190)
Q Consensus 38 ~~dvvitsy~~~~~~--~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~ 112 (190)
.++|+++|...+..+ ...+.+..||+||||||..+.. ...+..+....+++|-|=|-|
T Consensus 342 ~~~vv~~t~~~a~~~~~~~~~~~~~Fd~vIIDEAsQ~~e-----------------~~~lipL~~~~~~ILVGD~~Q 401 (646)
T 4b3f_X 342 SANVVLATNTGASADGPLKLLPESYFDVVVIDECAQALE-----------------ASCWIPLLKARKCILAGDHKQ 401 (646)
T ss_dssp HCSEEEEETTTTCSSSGGGGSCTTCCSEEEETTGGGSCH-----------------HHHTTTGGGSSEEEEEECTTS
T ss_pred hcceeeeehhhhhhhhHHHhhhhccCCEEEEcCccccch-----------------HHHHhhccccceEEEcCCccc
Confidence 457887775544432 1344567899999999966532 223334444567889999988
No 85
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=78.72 E-value=1.4 Score=40.59 Aligned_cols=58 Identities=12% Similarity=0.214 Sum_probs=38.0
Q ss_pred CccEEEecHHHHHhcHHHhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCC
Q psy13032 38 SFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQN 113 (190)
Q Consensus 38 ~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n 113 (190)
.++||++|...+.. ..+....||+||||||..+-. +.. .+..+....+++|.|=|.|-
T Consensus 495 ~a~VI~~T~~~~~~--~~l~~~~fd~viIDEAsQ~~e------------~~~----li~l~~~~~~~ilvGD~~QL 552 (800)
T 2wjy_A 495 NADVICCTCVGAGD--PRLAKMQFRSILIDESTQATE------------PEC----MVPVVLGAKQLILVGDHCQL 552 (800)
T ss_dssp HCSEEEEETGGGGC--TTTTTCCCSEEEETTGGGSCH------------HHH----HHHHTTTBSEEEEEECTTSC
T ss_pred cCCEEEEchhhhCC--hhhhcCCCCEEEEECCCCCCc------------HHH----HHHHHhcCCeEEEecccccC
Confidence 45788887655432 235567899999999977643 321 12223345689999998883
No 86
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=78.59 E-value=1.3 Score=40.10 Aligned_cols=55 Identities=16% Similarity=0.114 Sum_probs=32.3
Q ss_pred ccEEEecHHHHHhcHHHhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCc--CcEEEEecC
Q psy13032 39 FHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSC--RNRLLLSGT 109 (190)
Q Consensus 39 ~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~--~~r~lLTgT 109 (190)
.+++++|.+.+. ....+++||+||||++.+.. -.......+..+.. ...+++|+|
T Consensus 224 ~~il~~T~e~~~------l~~~v~lvVIDEaH~l~d~~----------~g~~~~~~l~~l~~~~i~il~~SAT 280 (677)
T 3rc3_A 224 ASHVSCTVEMCS------VTTPYEVAVIDEIQMIRDPA----------RGWAWTRALLGLCAEEVHLCGEPAA 280 (677)
T ss_dssp CSEEEEEGGGCC------SSSCEEEEEECSGGGGGCTT----------THHHHHHHHHHCCEEEEEEEECGGG
T ss_pred cceeEecHhHhh------hcccCCEEEEecceecCCcc----------chHHHHHHHHccCccceEEEeccch
Confidence 567777765432 12356999999999996521 22233345555542 344666666
No 87
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=77.97 E-value=3 Score=33.62 Aligned_cols=90 Identities=9% Similarity=-0.035 Sum_probs=45.5
Q ss_pred CeEEEEeCCHHHHH-HHHHHhhhhcccCCCCCccEEEec-------HHHHHhcHHHhhc----cCccEEEEcccccccCc
Q psy13032 8 FKVVPYWGSPQERK-ILRQFWDMKNLHTKDASFHVVITS-------YQLVVSDFKYFNR----IKWQYLILDEAQAIVDI 75 (190)
Q Consensus 8 l~v~~~~G~~~~r~-~~~~~~~~~~~~~~~~~~dvvits-------y~~~~~~~~~l~~----~~w~~vIvDEaH~lkn~ 75 (190)
...++++|.+..-+ .....+.++.........|++..+ .+.++.-.+.+.. -.|.+||+||||++...
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~~ 97 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQ 97 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCHH
Confidence 35778888763322 222222111101111344665543 3344444444332 24789999999999641
Q ss_pred ccccccchhhhhhhHHHHHHhcCCcCcEEEEec
Q psy13032 76 NVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSG 108 (190)
Q Consensus 76 ~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTg 108 (190)
......+.+..-....+++|+.
T Consensus 98 -----------a~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 98 -----------AANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp -----------HHHHTHHHHHSCCTTEEEEEEE
T ss_pred -----------HHHHHHHHHhCCCCCeEEEEEE
Confidence 2333455555555556666654
No 88
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=77.88 E-value=4.3 Score=32.28 Aligned_cols=50 Identities=12% Similarity=0.207 Sum_probs=32.0
Q ss_pred CccEEEEccccccc-CcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCCHHHHHH
Q psy13032 60 KWQYLILDEAQAIV-DINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWA 120 (190)
Q Consensus 60 ~w~~vIvDEaH~lk-n~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~~~el~~ 120 (190)
...++|+||+|.+. .. ......+.+.......++++|.++...-...+.+
T Consensus 105 ~~~vliiDEi~~l~~~~-----------~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~s 155 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAE-----------SQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQS 155 (324)
T ss_dssp CEEEEEEESCCCGGGHH-----------HHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHH
T ss_pred CCeEEEEECCcccCcHH-----------HHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHh
Confidence 56899999999995 20 3444455555555667888888776543334444
No 89
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=77.80 E-value=3.2 Score=31.52 Aligned_cols=59 Identities=12% Similarity=0.176 Sum_probs=37.5
Q ss_pred hhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCCCHHHHHHHHHhh
Q psy13032 56 FNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFI 125 (190)
Q Consensus 56 l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n~~~el~~ll~fl 125 (190)
+.+-.+|+||+||.-..-+.. -+ +.......+..-....-+++|| .+-+.+|..+-+++
T Consensus 116 l~~~~yDlvILDEi~~al~~g------~l--~~~ev~~~l~~Rp~~~~vIlTG---r~ap~~l~e~AD~V 174 (196)
T 1g5t_A 116 LADPLLDMVVLDELTYMVAYD------YL--PLEEVISALNARPGHQTVIITG---RGCHRDILDLADTV 174 (196)
T ss_dssp TTCTTCSEEEEETHHHHHHTT------SS--CHHHHHHHHHTSCTTCEEEEEC---SSCCHHHHHHCSEE
T ss_pred HhcCCCCEEEEeCCCccccCC------CC--CHHHHHHHHHhCcCCCEEEEEC---CCCcHHHHHhCcce
Confidence 344579999999994321110 00 4455677777667777899999 45566665555544
No 90
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=77.40 E-value=1.4 Score=40.60 Aligned_cols=57 Identities=18% Similarity=0.222 Sum_probs=37.7
Q ss_pred CCccEEEecHHHHHhcHHHhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCC
Q psy13032 37 ASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQ 112 (190)
Q Consensus 37 ~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~ 112 (190)
...+||++|...+.. ..+.. .|++||||||+.+.. .. . .+..+....+++|-|=|.|
T Consensus 497 ~~a~VI~~T~~~~~~--~~L~~-~fd~viIDEA~q~~e------------~~--~--li~l~~~~~~lilvGD~~Q 553 (802)
T 2xzl_A 497 NKADVVCCTCVGAGD--KRLDT-KFRTVLIDESTQASE------------PE--C--LIPIVKGAKQVILVGDHQQ 553 (802)
T ss_dssp HTCSEEEEETTGGGC--TTCCS-CCSEEEETTGGGSCH------------HH--H--HHHHTTTBSEEEEEECTTS
T ss_pred ccCCEEEechhhcCh--HHHhc-cCCEEEEECccccch------------HH--H--HHHHHhCCCEEEEEeCccc
Confidence 356888888765542 22444 899999999987743 32 1 2222334568999999988
No 91
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=76.90 E-value=2.6 Score=35.74 Aligned_cols=39 Identities=23% Similarity=0.123 Sum_probs=28.2
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCC
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQ 112 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~ 112 (190)
.++++||||+|.+. .......+..+....++++.|-|-|
T Consensus 128 ~~~~iiiDE~~~~~--------------~~~~~~l~~~~~~~~~~~~vGD~~Q 166 (459)
T 3upu_A 128 KCRVLICDEVSMYD--------------RKLFKILLSTIPPWCTIIGIGDNKQ 166 (459)
T ss_dssp SCSEEEESCGGGCC--------------HHHHHHHHHHSCTTCEEEEEECTTS
T ss_pred CCCEEEEECchhCC--------------HHHHHHHHHhccCCCEEEEECCHHH
Confidence 47899999999873 2333334444556778999999888
No 92
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=76.01 E-value=7.2 Score=29.99 Aligned_cols=37 Identities=19% Similarity=0.098 Sum_probs=23.2
Q ss_pred cCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecC
Q psy13032 59 IKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGT 109 (190)
Q Consensus 59 ~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgT 109 (190)
-.+++||+||+|.+.. ..-.....+.. ..-.++++|-
T Consensus 88 ~~~dvViIDEaQ~l~~------------~~ve~l~~L~~--~gi~Vil~Gl 124 (223)
T 2b8t_A 88 DETKVIGIDEVQFFDD------------RICEVANILAE--NGFVVIISGL 124 (223)
T ss_dssp TTCCEEEECSGGGSCT------------HHHHHHHHHHH--TTCEEEEECC
T ss_pred CCCCEEEEecCccCcH------------HHHHHHHHHHh--CCCeEEEEec
Confidence 3589999999998854 22112222222 2567889986
No 93
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=75.74 E-value=3.3 Score=31.04 Aligned_cols=51 Identities=22% Similarity=0.368 Sum_probs=29.5
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcC-CcCcEEEEecC--CCC----CCHHHHHHHHHhh
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGF-SCRNRLLLSGT--PIQ----NSMAELWALLHFI 125 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l-~~~~r~lLTgT--P~~----n~~~el~~ll~fl 125 (190)
.+|+||+||||.+.. .. ...+..+ .....++++|- .++ +...+|..+-+.+
T Consensus 81 ~~dvViIDEaqfl~~------------~~---v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V 138 (191)
T 1xx6_A 81 DTEVIAIDEVQFFDD------------EI---VEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFV 138 (191)
T ss_dssp TCSEEEECSGGGSCT------------HH---HHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEE
T ss_pred cCCEEEEECCCCCCH------------HH---HHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccE
Confidence 489999999999843 22 2233332 23457777774 222 4455555554444
No 94
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=75.21 E-value=1.6 Score=40.51 Aligned_cols=36 Identities=8% Similarity=0.271 Sum_probs=26.0
Q ss_pred CccEEEecHHHH-----HhcH----HHhhccCccEEEEccccccc
Q psy13032 38 SFHVVITSYQLV-----VSDF----KYFNRIKWQYLILDEAQAIV 73 (190)
Q Consensus 38 ~~dvvitsy~~~-----~~~~----~~l~~~~w~~vIvDEaH~lk 73 (190)
.+||++.|-+.+ +... ..+..-...++|||||++|-
T Consensus 172 ~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mL 216 (844)
T 1tf5_A 172 AADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSIL 216 (844)
T ss_dssp HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHH
T ss_pred CCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhh
Confidence 379999998877 3321 22334568899999999975
No 95
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=74.97 E-value=1.6 Score=40.44 Aligned_cols=37 Identities=14% Similarity=0.163 Sum_probs=26.3
Q ss_pred CccEEEecHHHHH-----hcH----HHhhccCccEEEEcccccccC
Q psy13032 38 SFHVVITSYQLVV-----SDF----KYFNRIKWQYLILDEAQAIVD 74 (190)
Q Consensus 38 ~~dvvitsy~~~~-----~~~----~~l~~~~w~~vIvDEaH~lkn 74 (190)
.+||+|.|.+.+. ... ..+..-...++|+||||++-.
T Consensus 163 ~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLi 208 (853)
T 2fsf_A 163 AADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILI 208 (853)
T ss_dssp HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTT
T ss_pred CCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHH
Confidence 3799999987763 221 123445788999999998863
No 96
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=73.95 E-value=3.6 Score=31.65 Aligned_cols=35 Identities=14% Similarity=0.294 Sum_probs=22.8
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcC-CcCcEEEEecC
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGF-SCRNRLLLSGT 109 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l-~~~~r~lLTgT 109 (190)
.+|+|++||||.+.. . .. ..+..+ .....+++||-
T Consensus 101 ~~dvViIDEaQF~~~------------~--~V-~~l~~l~~~~~~Vi~~Gl 136 (214)
T 2j9r_A 101 EMDVIAIDEVQFFDG------------D--IV-EVVQVLANRGYRVIVAGL 136 (214)
T ss_dssp SCCEEEECCGGGSCT------------T--HH-HHHHHHHHTTCEEEEEEC
T ss_pred CCCEEEEECcccCCH------------H--HH-HHHHHHhhCCCEEEEEec
Confidence 489999999999854 2 12 233332 23557888884
No 97
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=72.70 E-value=1.4 Score=33.31 Aligned_cols=13 Identities=38% Similarity=0.429 Sum_probs=11.0
Q ss_pred ccEEEEccccccc
Q psy13032 61 WQYLILDEAQAIV 73 (190)
Q Consensus 61 w~~vIvDEaH~lk 73 (190)
-.+||+||||.+-
T Consensus 88 ~~vliIDEAq~l~ 100 (199)
T 2r2a_A 88 GSIVIVDEAQDVW 100 (199)
T ss_dssp TCEEEETTGGGTS
T ss_pred ceEEEEEChhhhc
Confidence 5689999999983
No 98
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=71.37 E-value=6.3 Score=31.81 Aligned_cols=38 Identities=13% Similarity=0.105 Sum_probs=23.5
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEec
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSG 108 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTg 108 (190)
.+.++|+||||++... ......+.+..-.....++++.
T Consensus 108 ~~kvviIdead~l~~~-----------a~naLLk~lEep~~~~~~Il~t 145 (334)
T 1a5t_A 108 GAKVVWVTDAALLTDA-----------AANALLKTLEEPPAETWFFLAT 145 (334)
T ss_dssp SCEEEEESCGGGBCHH-----------HHHHHHHHHTSCCTTEEEEEEE
T ss_pred CcEEEEECchhhcCHH-----------HHHHHHHHhcCCCCCeEEEEEe
Confidence 5789999999999541 2333455555544445555544
No 99
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=69.58 E-value=6.4 Score=34.62 Aligned_cols=49 Identities=12% Similarity=0.230 Sum_probs=32.6
Q ss_pred cHHHhhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhc-CC--cCcEEEEecCCCCC
Q psy13032 52 DFKYFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLG-FS--CRNRLLLSGTPIQN 113 (190)
Q Consensus 52 ~~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~-l~--~~~r~lLTgTP~~n 113 (190)
+...+.....+++|+||+|.+++ .. ..+.++.. +. ...++++++||-..
T Consensus 265 ~~~~lrG~~~~~~iiDE~~~~~~------------~~-~l~~~~~~~l~~~~~~~ii~isTP~~~ 316 (592)
T 3cpe_A 265 SPDAVRGNSFAMIYIEDCAFIPN------------FH-DSWLAIQPVISSGRRSKIIITTTPNGL 316 (592)
T ss_dssp CHHHHHHSCCSEEEEETGGGCTT------------HH-HHHHHHHHHHSSSSCCEEEEEECCCTT
T ss_pred CCCCccCCCcceEEEehhccCCc------------hh-HHHHHHHHHhccCCCceEEEEeCCCCc
Confidence 34556667889999999999876 32 33333332 22 34689999999654
No 100
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=63.05 E-value=5.3 Score=31.23 Aligned_cols=14 Identities=21% Similarity=0.109 Sum_probs=12.5
Q ss_pred CccEEEEccccccc
Q psy13032 60 KWQYLILDEAQAIV 73 (190)
Q Consensus 60 ~w~~vIvDEaH~lk 73 (190)
.+|+|++||||-+.
T Consensus 90 ~~dvViIDEaQF~~ 103 (234)
T 2orv_A 90 GVAVIGIDEGQFFP 103 (234)
T ss_dssp TCSEEEESSGGGCT
T ss_pred cCCEEEEEchhhhh
Confidence 58999999999983
No 101
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=57.81 E-value=9.6 Score=30.30 Aligned_cols=43 Identities=23% Similarity=0.288 Sum_probs=27.8
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCC
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQN 113 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n 113 (190)
.+.++|+||+|.+... ......+.+.......+++++++....
T Consensus 133 ~~~vliiDE~~~l~~~-----------~~~~Ll~~le~~~~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDEADSMTAD-----------AQSALRRTMETYSGVTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETTGGGSCHH-----------HHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEECCCccCHH-----------HHHHHHHHHHhcCCCceEEEEeCchhh
Confidence 4569999999998541 344455566665556667776655443
No 102
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=57.38 E-value=10 Score=30.35 Aligned_cols=43 Identities=16% Similarity=0.319 Sum_probs=28.0
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCC
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQN 113 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n 113 (190)
.+.++|+||+|.+... ......+.+.......+++++++-...
T Consensus 134 ~~~vlilDE~~~L~~~-----------~~~~L~~~le~~~~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 134 RYKCVIINEANSLTKD-----------AQAALRRTMEKYSKNIRLIMVCDSMSP 176 (354)
T ss_dssp CCEEEEEECTTSSCHH-----------HHHHHHHHHHHSTTTEEEEEEESCSCS
T ss_pred CCeEEEEeCccccCHH-----------HHHHHHHHHHhhcCCCEEEEEeCCHHH
Confidence 5779999999997431 344456666666556667766654443
No 103
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=57.37 E-value=9.5 Score=29.80 Aligned_cols=41 Identities=20% Similarity=0.223 Sum_probs=25.8
Q ss_pred ccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCC
Q psy13032 61 WQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQ 112 (190)
Q Consensus 61 w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~ 112 (190)
..+||+||+|.+... ......+.+.......++++++++..
T Consensus 108 ~~viiiDe~~~l~~~-----------~~~~L~~~le~~~~~~~~il~~~~~~ 148 (323)
T 1sxj_B 108 HKIVILDEADSMTAG-----------AQQALRRTMELYSNSTRFAFACNQSN 148 (323)
T ss_dssp CEEEEEESGGGSCHH-----------HHHTTHHHHHHTTTTEEEEEEESCGG
T ss_pred ceEEEEECcccCCHH-----------HHHHHHHHHhccCCCceEEEEeCChh
Confidence 679999999998541 22223444545455667777776543
No 104
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=56.58 E-value=40 Score=22.25 Aligned_cols=57 Identities=12% Similarity=0.171 Sum_probs=34.1
Q ss_pred cCCCCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhc-cCccEEEEccc
Q psy13032 4 FVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNR-IKWQYLILDEA 69 (190)
Q Consensus 4 ~~p~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~-~~w~~vIvDEa 69 (190)
+.|..++++.......+..+...+... .+.|..+ .........+.+ ..+|+||+|-.
T Consensus 12 ~~~~~~ilivdd~~~~~~~l~~~L~~~-------g~~v~~~--~~~~~al~~l~~~~~~dlvilD~~ 69 (138)
T 2b4a_A 12 HMQPFRVTLVEDEPSHATLIQYHLNQL-------GAEVTVH--PSGSAFFQHRSQLSTCDLLIVSDQ 69 (138)
T ss_dssp --CCCEEEEECSCHHHHHHHHHHHHHT-------TCEEEEE--SSHHHHHHTGGGGGSCSEEEEETT
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHHc-------CCEEEEe--CCHHHHHHHHHhCCCCCEEEEeCC
Confidence 346788999998887777665543211 2444332 222333345556 68999999964
No 105
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=56.35 E-value=9.7 Score=30.54 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=25.9
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCC
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTP 110 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP 110 (190)
...+||+||+|.+... ......+.+........++++++-
T Consensus 119 ~~~vliiDe~~~l~~~-----------~~~~Ll~~le~~~~~~~~Il~~~~ 158 (373)
T 1jr3_A 119 RFKVYLIDEVHMLSRH-----------SFNALLKTLEEPPEHVKFLLATTD 158 (373)
T ss_dssp SSEEEEEECGGGSCHH-----------HHHHHHHHHHSCCSSEEEEEEESC
T ss_pred CeEEEEEECcchhcHH-----------HHHHHHHHHhcCCCceEEEEEeCC
Confidence 3679999999998531 333455555555556667777653
No 106
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=56.33 E-value=43 Score=22.60 Aligned_cols=54 Identities=9% Similarity=0.100 Sum_probs=34.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEccc
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEA 69 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEa 69 (190)
..+|++..+....+..+...+.. ..+.|+.++ ........+.+..+|+||+|-.
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~-------~g~~v~~~~--~~~~a~~~l~~~~~dlvi~d~~ 60 (154)
T 2rjn_A 7 NYTVMLVDDEQPILNSLKRLIKR-------LGCNIITFT--SPLDALEALKGTSVQLVISDMR 60 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHT-------TTCEEEEES--CHHHHHHHHTTSCCSEEEEESS
T ss_pred CCeEEEEcCCHHHHHHHHHHHHH-------cCCeEEEeC--CHHHHHHHHhcCCCCEEEEecC
Confidence 57889999888877766654321 235554332 2333345566678999999964
No 107
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=56.06 E-value=39 Score=21.97 Aligned_cols=55 Identities=13% Similarity=0.106 Sum_probs=34.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEccc
Q psy13032 6 PDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEA 69 (190)
Q Consensus 6 p~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEa 69 (190)
+..++++.......+..+...+... .+.++.++ ........+.+..+|+||+|-.
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~-------g~~v~~~~--~~~~a~~~l~~~~~dlvi~d~~ 60 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSL-------GATTVLAA--DGVDALELLGGFTPDLMICDIA 60 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHT-------TCEEEEES--CHHHHHHHHTTCCCSEEEECCC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhC-------CceEEEeC--CHHHHHHHHhcCCCCEEEEecC
Confidence 4678999999888777666543221 24454432 2233344566778999999964
No 108
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=55.77 E-value=11 Score=29.50 Aligned_cols=42 Identities=26% Similarity=0.314 Sum_probs=27.0
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCC
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQ 112 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~ 112 (190)
...+||+||+|.+... ......+.+.......+++++++...
T Consensus 110 ~~~vliiDe~~~l~~~-----------~~~~L~~~le~~~~~~~~i~~~~~~~ 151 (327)
T 1iqp_A 110 SFKIIFLDEADALTQD-----------AQQALRRTMEMFSSNVRFILSCNYSS 151 (327)
T ss_dssp SCEEEEEETGGGSCHH-----------HHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CCeEEEEeCCCcCCHH-----------HHHHHHHHHHhcCCCCeEEEEeCCcc
Confidence 4679999999998531 33344555555555667777765543
No 109
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=55.54 E-value=44 Score=22.48 Aligned_cols=56 Identities=13% Similarity=0.067 Sum_probs=33.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEccc
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEA 69 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEa 69 (190)
.++|++.......+..+...+. ..+.+ ..+............+.+..+|+||+|-.
T Consensus 20 m~~iLivdd~~~~~~~l~~~L~------~~~~~-~~v~~~~~~~~al~~l~~~~~dlii~D~~ 75 (150)
T 4e7p_A 20 HMKVLVAEDQSMLRDAMCQLLT------LQPDV-ESVLQAKNGQEAIQLLEKESVDIAILDVE 75 (150)
T ss_dssp CEEEEEECSCHHHHHHHHHHHH------TSTTE-EEEEEESSHHHHHHHHTTSCCSEEEECSS
T ss_pred ccEEEEEcCCHHHHHHHHHHHH------hCCCc-EEEEEECCHHHHHHHhhccCCCEEEEeCC
Confidence 4678899888887776665431 11111 22333333334445667778999999964
No 110
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=55.21 E-value=12 Score=28.34 Aligned_cols=14 Identities=21% Similarity=0.109 Sum_probs=12.3
Q ss_pred CccEEEEccccccc
Q psy13032 60 KWQYLILDEAQAIV 73 (190)
Q Consensus 60 ~w~~vIvDEaH~lk 73 (190)
..|+|++||||-++
T Consensus 91 ~~DvIlIDEaQFfk 104 (195)
T 1w4r_A 91 GVAVIGIDEGQFFP 104 (195)
T ss_dssp TCSEEEESSGGGCT
T ss_pred CCCEEEEEchhhhH
Confidence 46999999999994
No 111
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=53.70 E-value=11 Score=27.24 Aligned_cols=42 Identities=24% Similarity=0.306 Sum_probs=26.0
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCC
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQ 112 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~ 112 (190)
...++|+||+|.+... ........+.......++++|+....
T Consensus 102 ~~~vliiDe~~~l~~~-----------~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 102 PFKIIFLDEADALTAD-----------AQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp SCEEEEEETGGGSCHH-----------HHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CceEEEEeChhhcCHH-----------HHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 4678999999998541 23334444555455566777665443
No 112
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=52.24 E-value=13 Score=27.06 Aligned_cols=39 Identities=18% Similarity=0.186 Sum_probs=23.9
Q ss_pred ccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCC
Q psy13032 61 WQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTP 110 (190)
Q Consensus 61 w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP 110 (190)
..++|+||+|.+... ......+.+.......++++|++.
T Consensus 127 ~~vlviDe~~~l~~~-----------~~~~l~~~l~~~~~~~~~i~~t~~ 165 (250)
T 1njg_A 127 FKVYLIDEVHMLSRH-----------SFNALLKTLEEPPEHVKFLLATTD 165 (250)
T ss_dssp SEEEEEETGGGSCHH-----------HHHHHHHHHHSCCTTEEEEEEESC
T ss_pred ceEEEEECcccccHH-----------HHHHHHHHHhcCCCceEEEEEeCC
Confidence 568999999998431 233344444444455667776654
No 113
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=51.97 E-value=44 Score=22.16 Aligned_cols=87 Identities=10% Similarity=-0.018 Sum_probs=47.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhc-cCccEEEEcccccccCcccccccchhh
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNR-IKWQYLILDEAQAIVDINVYSYLNDIE 85 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~-~~w~~vIvDEaH~lkn~~~~~~~~~~~ 85 (190)
..+|++.......+..+...+... .+.|+.++ ........+.+ ..+|+||+|-.---..
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~-------g~~v~~~~--~~~~a~~~l~~~~~~dlvi~D~~l~~~~----------- 64 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKY-------GYTVEIAL--TGEAAVEKVSGGWYPDLILMDIELGEGM----------- 64 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHT-------TCEEEEES--SHHHHHHHHHTTCCCSEEEEESSCSSSC-----------
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHc-------CCEEEEec--ChHHHHHHHhcCCCCCEEEEeccCCCCC-----------
Confidence 468889998888777766543211 25555432 22233344544 6899999996431101
Q ss_pred hhhhHHHHHHhcCCcCcEEEEecCCCCCC
Q psy13032 86 REQSMRWKLLLGFSCRNRLLLSGTPIQNS 114 (190)
Q Consensus 86 ~~~s~~~~~~~~l~~~~r~lLTgTP~~n~ 114 (190)
..-...+.+........+++|+..-...
T Consensus 65 -~g~~~~~~l~~~~~~~ii~ls~~~~~~~ 92 (140)
T 3h5i_A 65 -DGVQTALAIQQISELPVVFLTAHTEPAV 92 (140)
T ss_dssp -CHHHHHHHHHHHCCCCEEEEESSSSCCC
T ss_pred -CHHHHHHHHHhCCCCCEEEEECCCCHHH
Confidence 2223333333333445788888665443
No 114
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=51.05 E-value=54 Score=22.11 Aligned_cols=54 Identities=6% Similarity=0.022 Sum_probs=33.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEccc
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEA 69 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEa 69 (190)
..+|++.......+..+...+. . ..+.|..+ .........+.+..+|+||+|-.
T Consensus 14 ~~~ILivdd~~~~~~~l~~~L~------~-~g~~v~~~--~~~~~a~~~l~~~~~dlvi~D~~ 67 (153)
T 3hv2_A 14 RPEILLVDSQEVILQRLQQLLS------P-LPYTLHFA--RDATQALQLLASREVDLVISAAH 67 (153)
T ss_dssp CCEEEEECSCHHHHHHHHHHHT------T-SSCEEEEE--SSHHHHHHHHHHSCCSEEEEESC
T ss_pred CceEEEECCCHHHHHHHHHHhc------c-cCcEEEEE--CCHHHHHHHHHcCCCCEEEEeCC
Confidence 4678899888887777665431 1 12555443 22333334556678999999965
No 115
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=50.98 E-value=48 Score=21.56 Aligned_cols=87 Identities=10% Similarity=0.020 Sum_probs=45.9
Q ss_pred CeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEE--EecHHHHHhcHHHhhccCccEEEEcccccccCcccccccchhh
Q psy13032 8 FKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVV--ITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYSYLNDIE 85 (190)
Q Consensus 8 l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvv--itsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~ 85 (190)
+++++.......+..+...+.. .+ +.++ ..+.+. ....+.+..+|+||+|-.-.-.
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~------~g-~~v~~~~~~~~~---a~~~~~~~~~dlii~d~~l~~~------------ 59 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIK------ND-IEILAELTEGGS---AVQRVETLKPDIVIIDVDIPGV------------ 59 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHH------TT-EEEEEEESSSTT---HHHHHHHHCCSEEEEETTCSSS------------
T ss_pred eEEEEEcCCHHHHHHHHHHHhh------CC-cEEEEEcCCHHH---HHHHHHhcCCCEEEEecCCCCC------------
Confidence 5788888888877766654321 12 5554 223222 2334555689999999643211
Q ss_pred hhhhHHHHHHhcCC-cCcEEEEecCCCCCCHHH
Q psy13032 86 REQSMRWKLLLGFS-CRNRLLLSGTPIQNSMAE 117 (190)
Q Consensus 86 ~~~s~~~~~~~~l~-~~~r~lLTgTP~~n~~~e 117 (190)
..-...+.++... ....+++|+.+-.....+
T Consensus 60 -~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~ 91 (134)
T 3f6c_A 60 -NGIQVLETLRKRQYSGIIIIVSAKNDHFYGKH 91 (134)
T ss_dssp -CHHHHHHHHHHTTCCSEEEEEECC---CTHHH
T ss_pred -ChHHHHHHHHhcCCCCeEEEEeCCCChHHHHH
Confidence 2223334444332 234677888665544444
No 116
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=50.38 E-value=41 Score=22.07 Aligned_cols=53 Identities=13% Similarity=-0.019 Sum_probs=33.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEe-cHHHHHhcHHHhhccCccEEEEccc
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVIT-SYQLVVSDFKYFNRIKWQYLILDEA 69 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvit-sy~~~~~~~~~l~~~~w~~vIvDEa 69 (190)
.++|++.......+..+...+.. ..+.+..+ +.+.+ ...+.+..+|+||+|-.
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~-------~~~~v~~~~~~~~a---~~~l~~~~~dlvi~d~~ 60 (137)
T 3hdg_A 7 ALKILIVEDDTDAREWLSTIISN-------HFPEVWSAGDGEEG---ERLFGLHAPDVIITDIR 60 (137)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHT-------TCSCEEEESSHHHH---HHHHHHHCCSEEEECSS
T ss_pred ccEEEEEeCCHHHHHHHHHHHHh-------cCcEEEEECCHHHH---HHHHhccCCCEEEEeCC
Confidence 47899999988887776654321 23344333 33333 34455568999999964
No 117
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=50.20 E-value=46 Score=22.49 Aligned_cols=54 Identities=17% Similarity=0.035 Sum_probs=32.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEccc
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEA 69 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEa 69 (190)
..++++..+....+..+...+.. ..+.|..++ ........+.+..+|+||+|-.
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~-------~g~~v~~~~--~~~~a~~~l~~~~~dliild~~ 56 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLEL-------AGFTVSSFA--SATEALAGLSADFAGIVISDIR 56 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHH-------TTCEEEEES--CHHHHHHTCCTTCCSEEEEESC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHH-------cCcEEEEEC--CHHHHHHHHHhCCCCEEEEeCC
Confidence 46788888888777766654321 234554332 2233334555667999999965
No 118
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=50.10 E-value=51 Score=21.58 Aligned_cols=54 Identities=11% Similarity=-0.063 Sum_probs=33.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEccc
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEA 69 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEa 69 (190)
..++++.......+..+...+. . ..+.|..++ ........+.+..+|+||+|-.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~------~-~g~~v~~~~--~~~~a~~~l~~~~~dlvi~d~~ 56 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLK------N-HFSKVITLS--SPVSLSTVLREENPEVVLLDMN 56 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHT------T-TSSEEEEEC--CHHHHHHHHHHSCEEEEEEETT
T ss_pred CceEEEEeCCHHHHHHHHHHHH------h-CCcEEEEeC--CHHHHHHHHHcCCCCEEEEeCC
Confidence 4678888888877776665431 1 134554332 2233334556668999999964
No 119
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=49.62 E-value=53 Score=21.61 Aligned_cols=55 Identities=11% Similarity=0.039 Sum_probs=34.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEcccc
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQ 70 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH 70 (190)
..++++.......+..+...+... .+.|..+ .........+.+..+|+||+|-..
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~-------g~~v~~~--~~~~~a~~~l~~~~~dlii~d~~l 61 (142)
T 3cg4_A 7 KGDVMIVDDDAHVRIAVKTILSDA-------GFHIISA--DSGGQCIDLLKKGFSGVVLLDIMM 61 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHT-------TCEEEEE--SSHHHHHHHHHTCCCEEEEEESCC
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHC-------CeEEEEe--CCHHHHHHHHHhcCCCEEEEeCCC
Confidence 578888888887777666543211 2444433 223333445666789999999653
No 120
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=49.51 E-value=53 Score=21.59 Aligned_cols=54 Identities=9% Similarity=0.171 Sum_probs=34.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEccc
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEA 69 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEa 69 (190)
..+|++.......+..+...+.. ..+.|..++ ........+.+..+|+||+|-.
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~-------~g~~v~~~~--~~~~a~~~l~~~~~dlvi~d~~ 59 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEK-------GGFDSDMVH--SAAQALEQVARRPYAAMTVDLN 59 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHH-------TTCEEEEEC--SHHHHHHHHHHSCCSEEEECSC
T ss_pred CCCEEEEcCCHHHHHHHHHHHHH-------CCCeEEEEC--CHHHHHHHHHhCCCCEEEEeCC
Confidence 46888898888877776654322 124543332 3333345566778999999964
No 121
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=47.75 E-value=23 Score=24.25 Aligned_cols=54 Identities=9% Similarity=0.119 Sum_probs=34.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEccc
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEA 69 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEa 69 (190)
..+|++.......+..+.+.+.. ..+.|..++ ........+.+..+|+||+|-.
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~-------~g~~v~~~~--~~~~al~~l~~~~~dlii~D~~ 60 (154)
T 3gt7_A 7 AGEILIVEDSPTQAEHLKHILEE-------TGYQTEHVR--NGREAVRFLSLTRPDLIISDVL 60 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHT-------TTCEEEEES--SHHHHHHHHTTCCCSEEEEESC
T ss_pred CCcEEEEeCCHHHHHHHHHHHHH-------CCCEEEEeC--CHHHHHHHHHhCCCCEEEEeCC
Confidence 46888999888877776654321 125554432 2333345666778999999964
No 122
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=47.57 E-value=21 Score=28.47 Aligned_cols=39 Identities=15% Similarity=-0.032 Sum_probs=26.3
Q ss_pred CccEEEEccccc-ccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecC
Q psy13032 60 KWQYLILDEAQA-IVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGT 109 (190)
Q Consensus 60 ~w~~vIvDEaH~-lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgT 109 (190)
...+||+||+|. +... ......+.+........+++++|
T Consensus 76 ~~kvvii~~~~~kl~~~-----------~~~aLl~~le~p~~~~~~il~~~ 115 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAA-----------INEQLLTLTGLLHDDLLLIVRGN 115 (343)
T ss_dssp SCEEEEEECCSSCCCTT-----------HHHHHHHHHTTCBTTEEEEEEES
T ss_pred CCeEEEEECCCCCCChH-----------HHHHHHHHHhcCCCCeEEEEEcC
Confidence 468999999999 7531 34445666666666666666654
No 123
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=47.11 E-value=51 Score=21.91 Aligned_cols=82 Identities=7% Similarity=0.000 Sum_probs=45.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEcccccccCcccccccchhhh
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYSYLNDIER 86 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~ 86 (190)
..+|++.......+..+...+... .+.|..+ .........+.+..+|+||+|-..--.
T Consensus 8 ~~~iLivd~~~~~~~~l~~~L~~~-------g~~v~~~--~~~~~a~~~l~~~~~dlii~d~~l~~~------------- 65 (147)
T 2zay_A 8 WWRIMLVDTQLPALAASISALSQE-------GFDIIQC--GNAIEAVPVAVKTHPHLIITEANMPKI------------- 65 (147)
T ss_dssp CEEEEEECTTGGGGHHHHHHHHHH-------TEEEEEE--SSHHHHHHHHHHHCCSEEEEESCCSSS-------------
T ss_pred CceEEEEeCCHHHHHHHHHHHHHc-------CCeEEEe--CCHHHHHHHHHcCCCCEEEEcCCCCCC-------------
Confidence 467888888877766665543221 2444432 222333345555689999999643211
Q ss_pred hhhHHHHHHhc---CCcCcEEEEecCC
Q psy13032 87 EQSMRWKLLLG---FSCRNRLLLSGTP 110 (190)
Q Consensus 87 ~~s~~~~~~~~---l~~~~r~lLTgTP 110 (190)
..-...+.+.. ......+++|+.+
T Consensus 66 ~g~~~~~~l~~~~~~~~~pii~ls~~~ 92 (147)
T 2zay_A 66 SGMDLFNSLKKNPQTASIPVIALSGRA 92 (147)
T ss_dssp CHHHHHHHHHTSTTTTTSCEEEEESSC
T ss_pred CHHHHHHHHHcCcccCCCCEEEEeCCC
Confidence 22334445554 2233467788754
No 124
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=46.85 E-value=6.8 Score=35.09 Aligned_cols=13 Identities=31% Similarity=0.437 Sum_probs=10.6
Q ss_pred cEEEEcccccccC
Q psy13032 62 QYLILDEAQAIVD 74 (190)
Q Consensus 62 ~~vIvDEaH~lkn 74 (190)
.+||+||+|++..
T Consensus 327 ~llVlDEah~~~~ 339 (664)
T 1c4o_A 327 FLVFLDESHVTVP 339 (664)
T ss_dssp CEEEEETHHHHHH
T ss_pred cEEEEecccccHH
Confidence 3789999998753
No 125
>3c01_A Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=46.64 E-value=17 Score=21.01 Aligned_cols=19 Identities=0% Similarity=0.064 Sum_probs=13.2
Q ss_pred hhhhcccCCCCCccEEEec
Q psy13032 27 WDMKNLHTKDASFHVVITS 45 (190)
Q Consensus 27 ~~~~~~~~~~~~~dvvits 45 (190)
...+.....-..+|||||+
T Consensus 30 ~a~~~m~~~Vp~AdvVitN 48 (48)
T 3c01_A 30 ILSEQVKSDIENSRLIVAN 48 (48)
T ss_pred HHHhHHHhcCCCCCEeecC
Confidence 3344455566889999986
No 126
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=46.46 E-value=23 Score=27.27 Aligned_cols=15 Identities=27% Similarity=0.240 Sum_probs=13.2
Q ss_pred CccEEEEcccccccC
Q psy13032 60 KWQYLILDEAQAIVD 74 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn 74 (190)
..++|++||||-+..
T Consensus 101 ~~dvV~IDEaQFf~~ 115 (219)
T 3e2i_A 101 NVDVIGIDEVQFFDD 115 (219)
T ss_dssp TCSEEEECCGGGSCT
T ss_pred CCCEEEEechhcCCH
Confidence 578999999999965
No 127
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=46.30 E-value=61 Score=21.35 Aligned_cols=53 Identities=15% Similarity=0.152 Sum_probs=33.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEcc
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDE 68 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDE 68 (190)
..++++..++...+..+...+.. ..+.|..+ .........+.+..+|+||+|-
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~-------~g~~v~~~--~~~~~a~~~l~~~~~dlvi~d~ 56 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEK-------DGFNVIWA--KNEQEAFTFLRREKIDLVFVDV 56 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGG-------GTCEEEEE--SSHHHHHHHHTTSCCSEEEEEC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHh-------CCCEEEEE--CCHHHHHHHHhccCCCEEEEeC
Confidence 46788888888877766654321 13455433 2233334556667899999997
No 128
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=45.58 E-value=16 Score=29.20 Aligned_cols=40 Identities=20% Similarity=0.357 Sum_probs=25.1
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCC
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTP 110 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP 110 (190)
...++|+||+|.+... ......+.+.......+++++.++
T Consensus 110 ~~~viiiDe~~~l~~~-----------~~~~L~~~le~~~~~~~~il~~n~ 149 (340)
T 1sxj_C 110 GFKLIILDEADAMTNA-----------AQNALRRVIERYTKNTRFCVLANY 149 (340)
T ss_dssp SCEEEEETTGGGSCHH-----------HHHHHHHHHHHTTTTEEEEEEESC
T ss_pred CceEEEEeCCCCCCHH-----------HHHHHHHHHhcCCCCeEEEEEecC
Confidence 3689999999998541 333344555555555566666554
No 129
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=44.96 E-value=60 Score=20.88 Aligned_cols=86 Identities=8% Similarity=0.021 Sum_probs=47.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEcccccccCcccccccchhhh
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYSYLNDIER 86 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~ 86 (190)
..+|++.......+..+...+... .+.|..+ .........+.+..+|+||+|-.-.=.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~-------g~~v~~~--~~~~~a~~~l~~~~~dlii~D~~l~~~------------- 60 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEML-------GFQADYV--MSGTDALHAMSTRGYDAVFIDLNLPDT------------- 60 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHT-------TEEEEEE--SSHHHHHHHHHHSCCSEEEEESBCSSS-------------
T ss_pred cceEEEEcCCHHHHHHHHHHHHHc-------CCCEEEE--CCHHHHHHHHHhcCCCEEEEeCCCCCC-------------
Confidence 357888888887777666543211 2444433 233333445666789999999643211
Q ss_pred hhhHHHHHHhcC---CcCcEEEEecCCCCCC
Q psy13032 87 EQSMRWKLLLGF---SCRNRLLLSGTPIQNS 114 (190)
Q Consensus 87 ~~s~~~~~~~~l---~~~~r~lLTgTP~~n~ 114 (190)
..-...+.++.. .....+++|+..-...
T Consensus 61 ~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~ 91 (127)
T 3i42_A 61 SGLALVKQLRALPMEKTSKFVAVSGFAKNDL 91 (127)
T ss_dssp BHHHHHHHHHHSCCSSCCEEEEEECC-CTTC
T ss_pred CHHHHHHHHHhhhccCCCCEEEEECCcchhH
Confidence 233344445443 2234677887665544
No 130
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=44.93 E-value=28 Score=27.05 Aligned_cols=54 Identities=13% Similarity=0.048 Sum_probs=28.5
Q ss_pred hhccCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCC
Q psy13032 56 FNRIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPI 111 (190)
Q Consensus 56 l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~ 111 (190)
+....-.++++||+|.+-...... .............+..-....++++|+++-
T Consensus 126 ~~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~ 179 (309)
T 3syl_A 126 LKRAMGGVLFIDEAYYLYRPDNER--DYGQEAIEILLQVMENNRDDLVVILAGYAD 179 (309)
T ss_dssp HHHHTTSEEEEETGGGSCCCC-----CCTHHHHHHHHHHHHHCTTTCEEEEEECHH
T ss_pred HHhcCCCEEEEEChhhhccCCCcc--cccHHHHHHHHHHHhcCCCCEEEEEeCChH
Confidence 333456799999999984311000 000012234444444445566788887653
No 131
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=44.16 E-value=19 Score=23.69 Aligned_cols=54 Identities=7% Similarity=-0.004 Sum_probs=33.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEccc
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEA 69 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEa 69 (190)
..+|++.......+..+...+.. ..+.|..++ ........+.+..+|+||+|-.
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~-------~g~~v~~~~--~~~~a~~~l~~~~~dlii~d~~ 59 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKR-------DHWQVEIAH--NGFDAGIKLSTFEPAIMTLDLS 59 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHH-------TTCEEEEES--SHHHHHHHHHHTCCSEEEEESC
T ss_pred CccEEEEECCHHHHHHHHHHHHH-------CCcEEEEeC--CHHHHHHHHHhcCCCEEEEecC
Confidence 56888888888877766654321 234554432 2233334556678999999965
No 132
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=43.66 E-value=61 Score=21.19 Aligned_cols=55 Identities=16% Similarity=0.197 Sum_probs=33.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCcc-EEEe-cHHHHHhcHHHhhccCccEEEEcccc
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFH-VVIT-SYQLVVSDFKYFNRIKWQYLILDEAQ 70 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~d-vvit-sy~~~~~~~~~l~~~~w~~vIvDEaH 70 (190)
..++++.......+..+...+... ..+. +..+ +.+ .....+.+..+|+||+|-..
T Consensus 8 ~~~iLivdd~~~~~~~l~~~L~~~------~~~~~v~~~~~~~---~a~~~l~~~~~dlii~d~~l 64 (143)
T 3cnb_A 8 DFSILIIEDDKEFADMLTQFLENL------FPYAKIKIAYNPF---DAGDLLHTVKPDVVMLDLMM 64 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHH------CTTCEEEEECSHH---HHHHHHHHTCCSEEEEETTC
T ss_pred CceEEEEECCHHHHHHHHHHHHhc------cCccEEEEECCHH---HHHHHHHhcCCCEEEEeccc
Confidence 578899998888777766543220 2345 3332 322 23345556679999999653
No 133
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=43.47 E-value=7.5 Score=30.37 Aligned_cols=15 Identities=33% Similarity=0.625 Sum_probs=12.4
Q ss_pred CccEEEEcccccccC
Q psy13032 60 KWQYLILDEAQAIVD 74 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn 74 (190)
...+||+||+|.+..
T Consensus 102 ~~~vliiDe~~~l~~ 116 (319)
T 2chq_A 102 PFKIIFLDEADALTA 116 (319)
T ss_dssp CCEEEEEETGGGSCH
T ss_pred CceEEEEeCCCcCCH
Confidence 467899999999853
No 134
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=43.05 E-value=18 Score=28.43 Aligned_cols=14 Identities=29% Similarity=0.071 Sum_probs=11.2
Q ss_pred ccEEEEcccccccC
Q psy13032 61 WQYLILDEAQAIVD 74 (190)
Q Consensus 61 w~~vIvDEaH~lkn 74 (190)
.-+||+||+|.+..
T Consensus 129 ~~vlvlDe~~~~~~ 142 (350)
T 2qen_A 129 EFIVAFDEAQYLRF 142 (350)
T ss_dssp CEEEEEETGGGGGG
T ss_pred CEEEEEeCHHHHhc
Confidence 45788999999853
No 135
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=42.70 E-value=15 Score=25.84 Aligned_cols=14 Identities=21% Similarity=0.382 Sum_probs=11.9
Q ss_pred CccEEEEccccccc
Q psy13032 60 KWQYLILDEAQAIV 73 (190)
Q Consensus 60 ~w~~vIvDEaH~lk 73 (190)
...++|+||+|.+.
T Consensus 115 ~~~vl~iDe~~~l~ 128 (187)
T 2p65_A 115 GQVVMFIDEIHTVV 128 (187)
T ss_dssp TSEEEEETTGGGGS
T ss_pred CceEEEEeCHHHhc
Confidence 45799999999986
No 136
>3bzy_A ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3bzl_A 3bzv_A 3bzx_A 3bzo_A 3bzz_A 3c03_B 3c00_A
Probab=42.43 E-value=22 Score=21.14 Aligned_cols=19 Identities=11% Similarity=0.097 Sum_probs=13.1
Q ss_pred hhhhcccCCCCCccEEEec
Q psy13032 27 WDMKNLHTKDASFHVVITS 45 (190)
Q Consensus 27 ~~~~~~~~~~~~~dvvits 45 (190)
...+.....-..+|||||+
T Consensus 36 ~a~~~m~~~Vp~AdvVItN 54 (54)
T 3bzy_A 36 IQSGSLANNIKKSTVIVKN 54 (54)
T ss_pred HHHhHHHhcCCCCCEEecC
Confidence 3344455566889999986
No 137
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=42.32 E-value=60 Score=20.14 Aligned_cols=84 Identities=8% Similarity=0.046 Sum_probs=45.1
Q ss_pred CeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEcccccccCcccccccchhhhh
Q psy13032 8 FKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYSYLNDIERE 87 (190)
Q Consensus 8 l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~ 87 (190)
.++++.......+..+...+.. ..+.+..++ ........+.+..+++||+|-...-. .
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~-------~g~~v~~~~--~~~~~~~~l~~~~~dlii~d~~~~~~-------------~ 59 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTA-------AGFKVIWLV--DGSTALDQLDLLQPIVILMAWPPPDQ-------------S 59 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHH-------TTCEEEEES--CHHHHHHHHHHHCCSEEEEECSTTCC-------------T
T ss_pred CEEEEEeCCHHHHHHHHHHHHh-------CCcEEEEec--CHHHHHHHHHhcCCCEEEEecCCCCC-------------C
Confidence 4677888887777666554321 124454432 22233344555679999999653211 2
Q ss_pred hhHHHHHHhcC---CcCcEEEEecCCCCC
Q psy13032 88 QSMRWKLLLGF---SCRNRLLLSGTPIQN 113 (190)
Q Consensus 88 ~s~~~~~~~~l---~~~~r~lLTgTP~~n 113 (190)
.....+.+... .....+++|+.+-..
T Consensus 60 ~~~~~~~l~~~~~~~~~~ii~~~~~~~~~ 88 (119)
T 2j48_A 60 CLLLLQHLREHQADPHPPLVLFLGEPPVD 88 (119)
T ss_dssp HHHHHHHHHHTCCCSSCCCEEEESSCCSS
T ss_pred HHHHHHHHHhccccCCCCEEEEeCCCCch
Confidence 23344444443 233457777765443
No 138
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=41.97 E-value=48 Score=27.76 Aligned_cols=41 Identities=12% Similarity=0.267 Sum_probs=24.3
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcC-CcCcEEEEecC
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGF-SCRNRLLLSGT 109 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l-~~~~r~lLTgT 109 (190)
..+++++||+|.+.... .........+..+ .....+++|.+
T Consensus 194 ~~~vL~IDEi~~l~~~~---------~~q~~l~~~l~~l~~~~~~iIitt~ 235 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKT---------GVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_dssp TCSEEEEECGGGGSSCH---------HHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCEEEEeCcccccCCh---------HHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 57899999999986510 0233344444443 33456666655
No 139
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=40.84 E-value=72 Score=20.63 Aligned_cols=57 Identities=5% Similarity=0.085 Sum_probs=33.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhc-------cCccEEEEcccc
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNR-------IKWQYLILDEAQ 70 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~-------~~w~~vIvDEaH 70 (190)
..++++.......+..+...+.. ..+...+.+..........+.+ ..+|+||+|-..
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~-------~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~ 65 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALAN-------STVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNL 65 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHT-------CSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHh-------cCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCC
Confidence 46788888888877776654321 1121122232333333344554 689999999653
No 140
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=40.83 E-value=79 Score=21.12 Aligned_cols=57 Identities=14% Similarity=0.046 Sum_probs=33.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEccc
Q psy13032 6 PDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEA 69 (190)
Q Consensus 6 p~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEa 69 (190)
+..+|++.......+..+...+... +.+.+ +............+.+..+|+||+|-.
T Consensus 14 ~~~~iLivdd~~~~~~~l~~~L~~~------~~~~~-v~~~~~~~~a~~~l~~~~~dlii~d~~ 70 (152)
T 3eul_A 14 EKVRVVVGDDHPLFREGVVRALSLS------GSVNV-VGEADDGAAALELIKAHLPDVALLDYR 70 (152)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHH------SSEEE-EEEESSHHHHHHHHHHHCCSEEEEETT
T ss_pred ceEEEEEEcCCHHHHHHHHHHHhhC------CCeEE-EEEeCCHHHHHHHHHhcCCCEEEEeCC
Confidence 4678899998888777666543221 22223 322222333334555668999999964
No 141
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=39.73 E-value=29 Score=23.38 Aligned_cols=54 Identities=13% Similarity=0.190 Sum_probs=32.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEccc
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEA 69 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEa 69 (190)
.+++++.......+..+...+. . ..+.++.++ ........+.+..+|+||+|=.
T Consensus 14 ~~~iLivdd~~~~~~~l~~~L~------~-~g~~v~~~~--~~~~al~~~~~~~~dlvl~D~~ 67 (143)
T 3m6m_D 14 SMRMLVADDHEANRMVLQRLLE------K-AGHKVLCVN--GAEQVLDAMAEEDYDAVIVDLH 67 (143)
T ss_dssp -CEEEEECSSHHHHHHHHHHHH------C---CEEEEES--SHHHHHHHHHHSCCSEEEEESC
T ss_pred cceEEEEeCCHHHHHHHHHHHH------H-cCCeEEEeC--CHHHHHHHHhcCCCCEEEEeCC
Confidence 5788999888877776665431 1 124444332 2223334556678999999954
No 142
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=39.52 E-value=14 Score=32.31 Aligned_cols=40 Identities=20% Similarity=0.300 Sum_probs=26.3
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCCCCC
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQN 113 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP~~n 113 (190)
.|+.|+|||+|-+-. ..-...+.+. .....+++.|-|-|.
T Consensus 213 ~~~~ilVDE~QD~~~------------~q~~ll~~l~--~~~~~l~~vGD~~Qs 252 (647)
T 3lfu_A 213 RFTNILVDEFQDTNN------------IQYAWIRLLA--GDTGKVMIVGDDDQS 252 (647)
T ss_dssp HCCEEEESSGGGCCH------------HHHHHHHHHH--TTTCEEEEEECGGGC
T ss_pred hCCEEEEECcccCCH------------HHHHHHHHHh--cCCCEEEEEcCchhh
Confidence 589999999997743 3333333332 234578888999874
No 143
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=39.35 E-value=86 Score=21.20 Aligned_cols=52 Identities=17% Similarity=0.175 Sum_probs=32.1
Q ss_pred CeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEE--EecHHHHHhcHHHhhcc--CccEEEEccc
Q psy13032 8 FKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVV--ITSYQLVVSDFKYFNRI--KWQYLILDEA 69 (190)
Q Consensus 8 l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvv--itsy~~~~~~~~~l~~~--~w~~vIvDEa 69 (190)
.+|++.......+..+...+.. ..+.++ ..+.+.+. ..+.+. .+|+||+|-.
T Consensus 37 ~~Ilivdd~~~~~~~l~~~L~~-------~g~~v~~~~~~~~~al---~~l~~~~~~~dliilD~~ 92 (157)
T 3hzh_A 37 FNVLIVDDSVFTVKQLTQIFTS-------EGFNIIDTAADGEEAV---IKYKNHYPNIDIVTLXIT 92 (157)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH-------TTCEEEEEESSHHHHH---HHHHHHGGGCCEEEECSS
T ss_pred eEEEEEeCCHHHHHHHHHHHHh-------CCCeEEEEECCHHHHH---HHHHhcCCCCCEEEEecc
Confidence 5788899888877766654321 135554 23433333 344445 7899999964
No 144
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=38.83 E-value=19 Score=28.52 Aligned_cols=54 Identities=13% Similarity=0.164 Sum_probs=29.9
Q ss_pred ccEEEEcccccccCcccccccchhhhhhhHHHHHHhcC-CcCcEEEEecCCCCC----CHHHHHHHHH
Q psy13032 61 WQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGF-SCRNRLLLSGTPIQN----SMAELWALLH 123 (190)
Q Consensus 61 w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l-~~~~r~lLTgTP~~n----~~~el~~ll~ 123 (190)
.+++++||+|.+..... ........+..+ ....++++|+|.-.. -...|.+-+.
T Consensus 99 ~~vL~iDEi~~l~~~~~---------~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~ 157 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKER---------TQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFE 157 (324)
T ss_dssp CSEEEEECGGGGTTCHH---------HHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHH
T ss_pred CCEEEEcCcccccCChH---------HHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhccc
Confidence 68999999999864100 223333343333 334578888873322 2345655553
No 145
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=38.45 E-value=10 Score=33.95 Aligned_cols=11 Identities=18% Similarity=0.628 Sum_probs=9.8
Q ss_pred EEEEccccccc
Q psy13032 63 YLILDEAQAIV 73 (190)
Q Consensus 63 ~vIvDEaH~lk 73 (190)
++|+||+|++.
T Consensus 334 llVlDEa~~~l 344 (661)
T 2d7d_A 334 MIVVDESHVTI 344 (661)
T ss_dssp EEEEETHHHHH
T ss_pred EEEEecHHHHH
Confidence 89999999974
No 146
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=38.14 E-value=37 Score=22.53 Aligned_cols=82 Identities=9% Similarity=0.032 Sum_probs=44.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEcccccccCcccccccchhhh
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYSYLNDIER 86 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~ 86 (190)
..++++.......+..+...+.. ..+.|..+ .........+.+..+|+||+|-.---.
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~-------~g~~v~~~--~~~~~al~~~~~~~~dlvllD~~l~~~------------- 61 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEE-------KGISIDLA--YNCEEAIGKIFSNKYDLIFLEIILSDG------------- 61 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHT-------TTCEEEEE--SSHHHHHHHHHHCCCSEEEEESEETTE-------------
T ss_pred CCeEEEEcCCHHHHHHHHHHHHH-------CCCEEEEE--CCHHHHHHHHHhcCCCEEEEeCCCCCC-------------
Confidence 56788888888777666554321 12444433 222233344556689999999643211
Q ss_pred hhhHHHHHHhcCCcCcEEEEecCC
Q psy13032 87 EQSMRWKLLLGFSCRNRLLLSGTP 110 (190)
Q Consensus 87 ~~s~~~~~~~~l~~~~r~lLTgTP 110 (190)
..-...+.+........+++|+.+
T Consensus 62 ~g~~l~~~l~~~~~~~ii~ls~~~ 85 (136)
T 2qzj_A 62 DGWTLCKKIRNVTTCPIVYMTYIN 85 (136)
T ss_dssp EHHHHHHHHHTTCCCCEEEEESCC
T ss_pred CHHHHHHHHccCCCCCEEEEEcCC
Confidence 122334444443333467787754
No 147
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=38.10 E-value=83 Score=20.58 Aligned_cols=54 Identities=7% Similarity=-0.090 Sum_probs=33.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEccc
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEA 69 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEa 69 (190)
..++++.......+..+...+. . ..+.|+.++ ........+.+..+|+||+|-.
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~------~-~g~~v~~~~--~~~~a~~~l~~~~~dlvi~D~~ 59 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLS------P-LDVTIQCFA--SAESFMRQQISDDAIGMIIEAH 59 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHT------T-SSSEEEEES--SHHHHTTSCCCTTEEEEEEETT
T ss_pred CCeEEEEcCCHHHHHHHHHHHH------H-CCcEEEEeC--CHHHHHHHHhccCCCEEEEeCc
Confidence 4678888888887776665431 1 235555433 2233334455667999999964
No 148
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=37.85 E-value=19 Score=26.44 Aligned_cols=54 Identities=13% Similarity=0.260 Sum_probs=29.4
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCc--CcEEEEecCCCCC----CHHHHHHHH
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSC--RNRLLLSGTPIQN----SMAELWALL 122 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~--~~r~lLTgTP~~n----~~~el~~ll 122 (190)
...++|+||+|.+..... ........+..+.. ..++++|++.... ....+.+-+
T Consensus 104 ~~~vliiDe~~~~~~~~~---------~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~ 163 (242)
T 3bos_A 104 QFDLICIDDVDAVAGHPL---------WEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRM 163 (242)
T ss_dssp GSSEEEEETGGGGTTCHH---------HHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHH
T ss_pred CCCEEEEeccccccCCHH---------HHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHh
Confidence 368999999999864100 13334444443322 2257777764332 235666555
No 149
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=37.54 E-value=22 Score=27.88 Aligned_cols=14 Identities=43% Similarity=0.577 Sum_probs=11.2
Q ss_pred ccEEEEcccccccC
Q psy13032 61 WQYLILDEAQAIVD 74 (190)
Q Consensus 61 w~~vIvDEaH~lkn 74 (190)
.-++|+||+|.+..
T Consensus 138 ~~vlvlDe~~~~~~ 151 (357)
T 2fna_A 138 NVIIVLDEAQELVK 151 (357)
T ss_dssp CEEEEEETGGGGGG
T ss_pred CeEEEEECHHHhhc
Confidence 45788999999854
No 150
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=36.91 E-value=86 Score=20.38 Aligned_cols=54 Identities=11% Similarity=0.011 Sum_probs=33.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEE--EecHHHHHhcHHHhhccCccEEEEcccc
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVV--ITSYQLVVSDFKYFNRIKWQYLILDEAQ 70 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvv--itsy~~~~~~~~~l~~~~w~~vIvDEaH 70 (190)
..++++..+....+..+...+... .+.++ ..+.+.+. ..+.+..+|+||+|-..
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~-------g~~v~~~~~~~~~a~---~~~~~~~~dlii~d~~~ 64 (140)
T 3cg0_A 9 LPGVLIVEDGRLAAATLRIQLESL-------GYDVLGVFDNGEEAV---RCAPDLRPDIALVDIML 64 (140)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHH-------TCEEEEEESSHHHHH---HHHHHHCCSEEEEESSC
T ss_pred CceEEEEECCHHHHHHHHHHHHHC-------CCeeEEEECCHHHHH---HHHHhCCCCEEEEecCC
Confidence 568889988888777666543221 35555 33444333 34445679999999653
No 151
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=36.51 E-value=84 Score=20.17 Aligned_cols=54 Identities=7% Similarity=-0.092 Sum_probs=32.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhcc-CccEEEEccc
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRI-KWQYLILDEA 69 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~-~w~~vIvDEa 69 (190)
..++++.......+..+...+.. ..+.++.+ .........+.+. .+|+||+|-.
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~-------~g~~v~~~--~~~~~a~~~l~~~~~~dlvi~d~~ 59 (132)
T 2rdm_A 5 AVTILLADDEAILLLDFESTLTD-------AGFLVTAV--SSGAKAIEMLKSGAAIDGVVTDIR 59 (132)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHH-------TTCEEEEE--SSHHHHHHHHHTTCCCCEEEEESC
T ss_pred CceEEEEcCcHHHHHHHHHHHHH-------cCCEEEEE--CCHHHHHHHHHcCCCCCEEEEeee
Confidence 46788888888777766554321 23455432 2223333455565 7999999964
No 152
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=35.80 E-value=97 Score=20.67 Aligned_cols=55 Identities=11% Similarity=0.237 Sum_probs=33.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEE--EecHHHHHhcHHHhhccCccEEEEcccc
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVV--ITSYQLVVSDFKYFNRIKWQYLILDEAQ 70 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvv--itsy~~~~~~~~~l~~~~w~~vIvDEaH 70 (190)
..++++.......+..+...+. ....+.++ ..+.+ .....+.+..+|+||+|-.-
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~------~~~~~~v~~~~~~~~---~a~~~l~~~~~dlii~D~~l 61 (153)
T 3cz5_A 5 TARIMLVDDHPIVREGYRRLIE------RRPGYAVVAEAADAG---EAYRLYRETTPDIVVMDLTL 61 (153)
T ss_dssp CEEEEEECSCHHHHHHHHHHHT------TSTTEEEEEEESSHH---HHHHHHHTTCCSEEEECSCC
T ss_pred ccEEEEECCcHHHHHHHHHHHh------hCCCcEEEEEeCCHH---HHHHHHhcCCCCEEEEecCC
Confidence 4678888888877776665431 11234544 23333 33345566779999999753
No 153
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=35.49 E-value=23 Score=29.00 Aligned_cols=15 Identities=40% Similarity=0.570 Sum_probs=12.5
Q ss_pred CccEEEEcccccccC
Q psy13032 60 KWQYLILDEAQAIVD 74 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn 74 (190)
...++|+||||.+-+
T Consensus 262 ~~~~i~iDEa~~~~~ 276 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVD 276 (392)
T ss_dssp TTCEEEETTGGGGCC
T ss_pred ccEEEEEecHHHHhC
Confidence 357899999999975
No 154
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=34.52 E-value=40 Score=26.89 Aligned_cols=38 Identities=18% Similarity=0.194 Sum_probs=21.9
Q ss_pred EEEEcccccccCcccccccchhhhhhhHH-HHHHhcCCcCcEEEEecCCC
Q psy13032 63 YLILDEAQAIVDINVYSYLNDIEREQSMR-WKLLLGFSCRNRLLLSGTPI 111 (190)
Q Consensus 63 ~vIvDEaH~lkn~~~~~~~~~~~~~~s~~-~~~~~~l~~~~r~lLTgTP~ 111 (190)
++|+||+|.+... ..... ...+.......++++|++..
T Consensus 136 vlilDEi~~l~~~-----------~~~~~~l~~l~~~~~~~~iI~~t~~~ 174 (384)
T 2qby_B 136 IIYLDEVDTLVKR-----------RGGDIVLYQLLRSDANISVIMISNDI 174 (384)
T ss_dssp EEEEETTHHHHHS-----------TTSHHHHHHHHTSSSCEEEEEECSST
T ss_pred EEEEECHHHhccC-----------CCCceeHHHHhcCCcceEEEEEECCC
Confidence 8999999998531 11122 22333333556777777654
No 155
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=34.22 E-value=35 Score=23.48 Aligned_cols=40 Identities=18% Similarity=0.056 Sum_probs=26.9
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCcCcEEEEecCC
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTP 110 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~~~r~lLTgTP 110 (190)
.-..+++||.+.+... ........+.......+++.|.+.
T Consensus 76 ~~g~l~ldei~~l~~~-----------~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 76 QGGTLVLSHPEHLTRE-----------QQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp TTSCEEEECGGGSCHH-----------HHHHHHHHHHSSSCSSCEEEEESS
T ss_pred CCcEEEEcChHHCCHH-----------HHHHHHHHHhhcCCCEEEEEECCc
Confidence 4468999999999541 445556666566666677776654
No 156
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=33.14 E-value=30 Score=22.95 Aligned_cols=55 Identities=16% Similarity=0.111 Sum_probs=34.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhc-cCccEEEEccc
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNR-IKWQYLILDEA 69 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~-~~w~~vIvDEa 69 (190)
..+|++.......+..+...+.. ...+.|+.++ ........+.+ ..+|+||+|-.
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~------~~~~~v~~~~--~~~~a~~~l~~~~~~dlvi~D~~ 59 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDN------IGEYDFIEVE--NLKKFYSIFKDLDSITLIIMDIA 59 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHH------HCCCEEEEEC--SHHHHHTTTTTCCCCSEEEECSC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHh------ccCccEEEEC--CHHHHHHHHhcCCCCcEEEEeCC
Confidence 46788888888877776654422 0235555332 22333345666 78999999954
No 157
>1p15_A Protein-tyrosine phosphatase alpha; transmembrane, hydrolase, phosphorylation; 2.00A {Mus musculus} SCOP: c.45.1.2
Probab=32.81 E-value=31 Score=26.67 Aligned_cols=25 Identities=12% Similarity=0.546 Sum_probs=22.1
Q ss_pred CcCcEEEEecCCCCCCHHHHHHHHH
Q psy13032 99 SCRNRLLLSGTPIQNSMAELWALLH 123 (190)
Q Consensus 99 ~~~~r~lLTgTP~~n~~~el~~ll~ 123 (190)
..+.++++|-.|+.+.+.|+|.|+.
T Consensus 49 ~~~~~yIatQ~Pl~~T~~dFW~MVw 73 (253)
T 1p15_A 49 RQKDSYIASQGPLLHTIEDFWRMIW 73 (253)
T ss_dssp SCTTCEEEECCCCSSSHHHHHHHHH
T ss_pred CCcceEEEeCCCChHHHHHHhHhhe
Confidence 3456799999999999999999987
No 158
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=32.51 E-value=54 Score=21.60 Aligned_cols=53 Identities=17% Similarity=0.131 Sum_probs=32.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEccc
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEA 69 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEa 69 (190)
..+|++.......+..+...+. . . +.|..++ ........+.+..+|+||+|-.
T Consensus 3 ~~~iLivdd~~~~~~~l~~~l~------~-~-~~v~~~~--~~~~a~~~~~~~~~dlvi~D~~ 55 (140)
T 3n53_A 3 LKKILIIDQQDFSRIELKNFLD------S-E-YLVIESK--NEKEALEQIDHHHPDLVILDMD 55 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHT------T-T-SEEEEES--SHHHHHHHHHHHCCSEEEEETT
T ss_pred CCEEEEEeCCHHHHHHHHHHHH------h-c-ceEEEeC--CHHHHHHHHhcCCCCEEEEeCC
Confidence 3578888888877776665431 1 1 4554432 2233334555668999999954
No 159
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=32.37 E-value=34 Score=30.80 Aligned_cols=13 Identities=46% Similarity=0.736 Sum_probs=11.4
Q ss_pred CccEEEEcccccc
Q psy13032 60 KWQYLILDEAQAI 72 (190)
Q Consensus 60 ~w~~vIvDEaH~l 72 (190)
..|++|||||=.|
T Consensus 255 ~~dlliVDEAAaI 267 (671)
T 2zpa_A 255 QADWLVVDEAAAI 267 (671)
T ss_dssp CCSEEEEETGGGS
T ss_pred cCCEEEEEchhcC
Confidence 4799999999777
No 160
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=32.21 E-value=66 Score=21.19 Aligned_cols=53 Identities=9% Similarity=0.163 Sum_probs=31.6
Q ss_pred CeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEccc
Q psy13032 8 FKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEA 69 (190)
Q Consensus 8 l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEa 69 (190)
.++++.......+..+...+. . ..+.+.+++ ........+.+..+|+||+|-.
T Consensus 11 ~~iLivdd~~~~~~~l~~~L~------~-~~~~v~~~~--~~~~al~~l~~~~~dlvllD~~ 63 (140)
T 3c97_A 11 LSVLIAEDNDICRLVAAKALE------K-CTNDITVVT--NGLQALQAYQNRQFDVIIMDIQ 63 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHT------T-TCSEEEEES--SHHHHHHHHHHSCCSEEEECTT
T ss_pred ceEEEEcCCHHHHHHHHHHHH------H-cCCceEEEC--CHHHHHHHHhcCCCCEEEEeCC
Confidence 578888888877766655431 1 124454432 2223334455667999999964
No 161
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=31.38 E-value=1.1e+02 Score=19.98 Aligned_cols=53 Identities=11% Similarity=0.063 Sum_probs=32.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEe-cHHHHHhcHHHhh--ccCccEEEEccc
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVIT-SYQLVVSDFKYFN--RIKWQYLILDEA 69 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvit-sy~~~~~~~~~l~--~~~w~~vIvDEa 69 (190)
..++++..+....+..+...+.. ..+.++.+ +.+. ....+. +..+|+||+|-.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~-------~g~~v~~~~~~~~---a~~~~~~~~~~~dlvi~d~~ 58 (143)
T 3jte_A 3 LAKILVIDDESTILQNIKFLLEI-------DGNEVLTASSSTE---GLRIFTENCNSIDVVITDMK 58 (143)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHH-------TTCEEEEESSHHH---HHHHHHHTTTTCCEEEEESC
T ss_pred CCEEEEEcCCHHHHHHHHHHHHh-------CCceEEEeCCHHH---HHHHHHhCCCCCCEEEEeCC
Confidence 46788888888777766654321 12445443 3332 233444 568999999964
No 162
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=30.53 E-value=1.2e+02 Score=19.95 Aligned_cols=56 Identities=18% Similarity=0.271 Sum_probs=34.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEccc
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEA 69 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEa 69 (190)
..+|++.......+..+...+... .+.+.+............+.+..+|+||+|-.
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~-------~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~ 60 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRK-------DIHCQLEFVDNGAKALYQVQQAKYDLIILDIG 60 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHT-------TCCEEEEEESSHHHHHHHHTTCCCSEEEECTT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhc-------CCCeeEEEECCHHHHHHHhhcCCCCEEEEeCC
Confidence 467888888888777666543211 23433333333334445666778999999965
No 163
>2hc1_A Receptor-type tyrosine-protein phosphatase beta; protein tyrosine phosphatase, WPD-loop, sulfamic acid, inhibitor, drug design, hydrolase; 1.30A {Homo sapiens} PDB: 2h03_A 2hc2_A 2i4g_A* 2h04_A* 2h02_A 2i3u_A 2i3r_A 2i4e_A* 2i4h_A* 2i5x_A* 2ahs_A
Probab=30.43 E-value=37 Score=26.88 Aligned_cols=25 Identities=12% Similarity=0.563 Sum_probs=21.9
Q ss_pred CcCcEEEEecCCCCCCHHHHHHHHH
Q psy13032 99 SCRNRLLLSGTPIQNSMAELWALLH 123 (190)
Q Consensus 99 ~~~~r~lLTgTP~~n~~~el~~ll~ 123 (190)
....++++|-.|+++.+.|+|.|+.
T Consensus 88 ~~~~~yIatQgPl~~T~~dFW~MVw 112 (291)
T 2hc1_A 88 NFRREYIVTQGPLPGTKDDFWKMVW 112 (291)
T ss_dssp SSSCSEEEECCCCTTTHHHHHHHHH
T ss_pred CCcccEEEECCCChhHHHHHHHHHH
Confidence 3456799999999999999999987
No 164
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=30.15 E-value=54 Score=21.14 Aligned_cols=54 Identities=15% Similarity=0.107 Sum_probs=31.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCc-cEEEecHHHHHhcHHHhhccCccEEEEccc
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASF-HVVITSYQLVVSDFKYFNRIKWQYLILDEA 69 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~-dvvitsy~~~~~~~~~l~~~~w~~vIvDEa 69 (190)
..++++.......+..+...+. . ..+ .+..+ .........+.+..+|+||+|-.
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~------~-~g~~~v~~~--~~~~~a~~~~~~~~~dlvl~D~~ 60 (129)
T 1p6q_A 6 KIKVLIVDDQVTSRLLLGDALQ------Q-LGFKQITAA--GDGEQGMKIMAQNPHHLVISDFN 60 (129)
T ss_dssp CCCEEEECSSHHHHHHHHHHHH------T-TTCSCEECC--SSHHHHHHHHHTSCCSEEEECSS
T ss_pred cCeEEEEcCCHHHHHHHHHHHH------H-CCCcEEEec--CCHHHHHHHHHcCCCCEEEEeCC
Confidence 4678888888877766655431 1 123 23322 22222334555667999999964
No 165
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=29.92 E-value=42 Score=23.45 Aligned_cols=39 Identities=23% Similarity=0.420 Sum_probs=23.7
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCc--CcEEEEecC
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSC--RNRLLLSGT 109 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~--~~r~lLTgT 109 (190)
..+++|+||.+.+... .....+..+..+.. ..++++|+.
T Consensus 83 ~~~lLilDE~~~~~~~-----------~~~~l~~li~~~~~~g~~~iiits~ 123 (149)
T 2kjq_A 83 EAEYLAVDQVEKLGNE-----------EQALLFSIFNRFRNSGKGFLLLGSE 123 (149)
T ss_dssp GCSEEEEESTTCCCSH-----------HHHHHHHHHHHHHHHTCCEEEEEES
T ss_pred CCCEEEEeCccccChH-----------HHHHHHHHHHHHHHcCCcEEEEECC
Confidence 5799999999987541 23344455544432 224677765
No 166
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=29.74 E-value=49 Score=21.90 Aligned_cols=54 Identities=11% Similarity=-0.021 Sum_probs=32.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEccc
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEA 69 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEa 69 (190)
..++++.......+..+...+.. ..+.|..++ ......+.+.+..+|+||+|-.
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~-------~g~~v~~~~--~~~~al~~~~~~~~dlvl~D~~ 57 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRG-------AGYEVRRAA--SGEEALQQIYKNLPDALICDVL 57 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHH-------TTCEEEEES--SHHHHHHHHHHSCCSEEEEESC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHH-------CCCEEEEeC--CHHHHHHHHHhCCCCEEEEeCC
Confidence 46788888888777666554321 235554432 2233334556678999999964
No 167
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=29.37 E-value=48 Score=23.45 Aligned_cols=54 Identities=9% Similarity=0.011 Sum_probs=33.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEccc
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEA 69 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEa 69 (190)
..+|++.......+..+...+.. ..+.|..+ .........+.+..+|+||+|=.
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~-------~g~~v~~~--~~~~~al~~~~~~~~dlvl~D~~ 60 (184)
T 3rqi_A 7 DKNFLVIDDNEVFAGTLARGLER-------RGYAVRQA--HNKDEALKLAGAEKFEFITVXLH 60 (184)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHH-------TTCEEEEE--CSHHHHHHHHTTSCCSEEEECSE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHH-------CCCEEEEe--CCHHHHHHHHhhCCCCEEEEecc
Confidence 46788888888877766654321 12555433 22233345566778999999953
No 168
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=29.26 E-value=49 Score=21.41 Aligned_cols=53 Identities=15% Similarity=0.075 Sum_probs=31.9
Q ss_pred CeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEccc
Q psy13032 8 FKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEA 69 (190)
Q Consensus 8 l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEa 69 (190)
.++++.......+..+...... ..+.|+.+ +......+.+.+..+|+||+|=.
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~-------~g~~v~~~--~~~~~al~~l~~~~~dlvllD~~ 55 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKK-------EGYEVIEA--ENGQIALEKLSEFTPDLIVLXIM 55 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH-------TTCEEEEE--SSHHHHHHHHTTBCCSEEEECSC
T ss_pred ceEEEEeCCHHHHHHHHHHHHH-------CCcEEEEe--CCHHHHHHHHHhcCCCEEEEecc
Confidence 3677788777776665543311 13555533 23333445666778999999953
No 169
>2cm2_A Tyrosine-protein phosphatase non-receptor type 1; polymorphism, phosphorylation, endoplasmic reticulum, oxidation, hydrolase, acetylation; 1.5A {Homo sapiens} SCOP: c.45.1.2 PDB: 2cm3_A 2cmb_A* 2cmc_A* 2cne_A* 3a5j_A 2cma_A 3a5k_A 3eu0_A 3sme_A 2azr_A* 2b07_A* 2h4g_A* 2h4k_A* 2hb1_A* 2qbp_A* 2qbq_A* 2qbr_A* 2qbs_A* 2zmm_A* 2zn7_A* ...
Probab=29.24 E-value=44 Score=26.60 Aligned_cols=24 Identities=17% Similarity=0.609 Sum_probs=21.7
Q ss_pred cCcEEEEecCCCCCCHHHHHHHHH
Q psy13032 100 CRNRLLLSGTPIQNSMAELWALLH 123 (190)
Q Consensus 100 ~~~r~lLTgTP~~n~~~el~~ll~ 123 (190)
...++++|-.|+.+.+.|+|.|+.
T Consensus 83 ~~~~yIatQgPl~~T~~dFW~MVw 106 (304)
T 2cm2_A 83 AQRSYILTQGPLPNTCGHFWEMVW 106 (304)
T ss_dssp TTEEEEEECCCCTTSHHHHHHHHH
T ss_pred CcceEEEECCCCcchHHHHHHHHH
Confidence 456899999999999999999987
No 170
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=29.23 E-value=1.1e+02 Score=19.44 Aligned_cols=54 Identities=19% Similarity=0.161 Sum_probs=32.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEccc
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEA 69 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEa 69 (190)
..++++.......+..+...+.. ..+.+..++ ........+.+..+|+||+|-.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~-------~~~~v~~~~--~~~~~~~~~~~~~~dlvi~D~~ 56 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTM-------NGFAVKMHQ--SAEAFLAFAPDVRNGVLVTDLR 56 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHH-------TTCEEEEES--CHHHHHHHGGGCCSEEEEEECC
T ss_pred CCEEEEEcCCHHHHHHHHHHHHh-------CCcEEEEeC--CHHHHHHHHhcCCCCEEEEECC
Confidence 56788888888777766554321 124444332 2223334556668999999964
No 171
>2ooq_A Receptor-type tyrosine-protein phosphatase T; protein tyrosine phosphatase, human, structural GE structural genomics consortium, SGC, hydrolase; HET: B3P; 1.80A {Homo sapiens} PDB: 1rpm_A 2c7s_A
Probab=29.18 E-value=37 Score=26.77 Aligned_cols=25 Identities=12% Similarity=0.509 Sum_probs=22.0
Q ss_pred CcCcEEEEecCCCCCCHHHHHHHHH
Q psy13032 99 SCRNRLLLSGTPIQNSMAELWALLH 123 (190)
Q Consensus 99 ~~~~r~lLTgTP~~n~~~el~~ll~ 123 (190)
....++++|-.|+.+.+.|+|.|+.
T Consensus 87 ~~~~~yIatQ~Pl~~T~~dFW~MVw 111 (286)
T 2ooq_A 87 HRPRHYIATQGPMQETVKDFWRMIW 111 (286)
T ss_dssp SSTTCEEEECCCCTTTHHHHHHHHH
T ss_pred CCcccEEEEcCCCcchHHHHHHHHH
Confidence 3456899999999999999999987
No 172
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=28.57 E-value=76 Score=21.80 Aligned_cols=56 Identities=16% Similarity=0.102 Sum_probs=32.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEccc
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEA 69 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEa 69 (190)
.++|++.......+..+...+. ..+.+.++ .+..........+.+..+|+||+|-.
T Consensus 25 ~~~ILivdd~~~~~~~l~~~L~------~~~~~~~v-~~~~~~~~al~~l~~~~~dlvilD~~ 80 (164)
T 3t8y_A 25 VIRVLVVDDSAFMRMVLKDIID------SQPDMKVV-GFAKDGLEAVEKAIELKPDVITMDIE 80 (164)
T ss_dssp CEEEEEECSCHHHHHHHHHHHH------TSTTEEEE-EEESSHHHHHHHHHHHCCSEEEECSS
T ss_pred ccEEEEEcCCHHHHHHHHHHHh------cCCCeEEE-EecCCHHHHHHHhccCCCCEEEEeCC
Confidence 3578888888877776665431 11223333 22222223334455668999999954
No 173
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.53 E-value=1.4e+02 Score=25.08 Aligned_cols=69 Identities=19% Similarity=0.196 Sum_probs=36.4
Q ss_pred ccCccEEEEcccccccCcccccccchhhhhhhHHHHHHh---cCC-cCcEEEEecCCCCCCHHHHHHHHHhhCCCCCC
Q psy13032 58 RIKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLL---GFS-CRNRLLLSGTPIQNSMAELWALLHFIMPSMFD 131 (190)
Q Consensus 58 ~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~---~l~-~~~r~lLTgTP~~n~~~el~~ll~fl~p~~~~ 131 (190)
+....+|.+||...+.........+.-..........+. .+. ....+++-+|-....++. .+++|+.|.
T Consensus 239 ~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDp-----AllRpGRfD 311 (405)
T 4b4t_J 239 EHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDP-----ALLRPGRID 311 (405)
T ss_dssp HTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCH-----HHHSTTSSC
T ss_pred HhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCH-----hHcCCCcCc
Confidence 445667889999988643211111111111222333333 333 345566777766677665 457788764
No 174
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=28.34 E-value=1.8e+02 Score=21.58 Aligned_cols=81 Identities=12% Similarity=0.026 Sum_probs=44.3
Q ss_pred CeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEcccccccCcccccccchhhhh
Q psy13032 8 FKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYSYLNDIERE 87 (190)
Q Consensus 8 l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~ 87 (190)
.+|++.......+..+...+.. ..+.|. ...........+....+|+||+|-.- -.. .
T Consensus 38 ~~ILivdd~~~~~~~l~~~L~~-------~g~~v~--~~~~~~~al~~~~~~~~DlvllD~~l--p~~-----------~ 95 (249)
T 3q9s_A 38 QRILVIEDDHDIANVLRMDLTD-------AGYVVD--HADSAMNGLIKAREDHPDLILLDLGL--PDF-----------D 95 (249)
T ss_dssp CEEEEECSCHHHHHHHHHHHHT-------TTCEEE--EESSHHHHHHHHHHSCCSEEEEECCS--CHH-----------H
T ss_pred CEEEEEECCHHHHHHHHHHHHH-------CCCEEE--EeCCHHHHHHHHhcCCCCEEEEcCCC--CCC-----------C
Confidence 5788888888777766554311 123333 22233333445566789999999642 110 2
Q ss_pred hhHHHHHHhcCCcCcEEEEecCC
Q psy13032 88 QSMRWKLLLGFSCRNRLLLSGTP 110 (190)
Q Consensus 88 ~s~~~~~~~~l~~~~r~lLTgTP 110 (190)
.-...+.+........+++|+..
T Consensus 96 G~~l~~~lr~~~~~~iI~lt~~~ 118 (249)
T 3q9s_A 96 GGDVVQRLRKNSALPIIVLTARD 118 (249)
T ss_dssp HHHHHHHHHTTCCCCEEEEESCC
T ss_pred HHHHHHHHHcCCCCCEEEEECCC
Confidence 22333444443334578888854
No 175
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=28.00 E-value=1.2e+02 Score=19.39 Aligned_cols=52 Identities=12% Similarity=-0.083 Sum_probs=29.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEe-cHHHHHhcHHHhhccCccEEEEccc
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVIT-SYQLVVSDFKYFNRIKWQYLILDEA 69 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvit-sy~~~~~~~~~l~~~~w~~vIvDEa 69 (190)
..++++.......+..+...+. .. .+.+..+ +.+.+. ..+.+. +|+||+|-.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~------~~-~~~v~~~~~~~~~~---~~~~~~-~dlvi~D~~ 55 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVE------PI-FGNVEAFQHPRAFL---TLSLNK-QDIIILDLM 55 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHT------TT-CSCEEEESCHHHHT---TSCCCT-TEEEEEECC
T ss_pred cceEEEEeCCHHHHHHHHHHHH------hh-cceeeeecCHHHHH---HhhccC-CCEEEEeCC
Confidence 4678888888877776665431 11 2233333 332222 233444 999999964
No 176
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=27.35 E-value=1.2e+02 Score=20.00 Aligned_cols=84 Identities=13% Similarity=0.098 Sum_probs=44.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEE--EecHHHHHhcHHHhhcc-CccEEEEcccccccCcccccccch
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVV--ITSYQLVVSDFKYFNRI-KWQYLILDEAQAIVDINVYSYLND 83 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvv--itsy~~~~~~~~~l~~~-~w~~vIvDEaH~lkn~~~~~~~~~ 83 (190)
.-+|++.......+..+.... ...+.+.++ ..+.+. ....+.+. .+|+||+|-.--=.
T Consensus 13 ~~~vlivdd~~~~~~~l~~~L------~~~~~~~~v~~~~~~~~---al~~l~~~~~~dlvilD~~l~~~---------- 73 (145)
T 3kyj_B 13 PYNVMIVDDAAMMRLYIASFI------KTLPDFKVVAQAANGQE---ALDKLAAQPNVDLILLDIEMPVM---------- 73 (145)
T ss_dssp SEEEEEECSCHHHHHHHHHHH------TTCTTEEEEEEESSHHH---HHHHHHHCTTCCEEEECTTSCCC----------
T ss_pred CCeEEEEcCCHHHHHHHHHHH------HhCCCceEEEEECCHHH---HHHHHhcCCCCCEEEEeCCCCCC----------
Confidence 456777777777777666543 122245543 233333 33445555 79999999642211
Q ss_pred hhhhhhHHHHHHhcCCcCcEEEEecCCCC
Q psy13032 84 IEREQSMRWKLLLGFSCRNRLLLSGTPIQ 112 (190)
Q Consensus 84 ~~~~~s~~~~~~~~l~~~~r~lLTgTP~~ 112 (190)
..-...+.++.......+++|++...
T Consensus 74 ---~g~~~~~~lr~~~~~~iiil~~~~~~ 99 (145)
T 3kyj_B 74 ---DGMEFLRHAKLKTRAKICMLSSVAVS 99 (145)
T ss_dssp ---TTCHHHHHHHHHCCCEEC-CBSSCST
T ss_pred ---CHHHHHHHHHhcCCCCeEEEEEeccC
Confidence 22233333443333456777775543
No 177
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=27.25 E-value=1.2e+02 Score=19.01 Aligned_cols=52 Identities=17% Similarity=0.005 Sum_probs=29.0
Q ss_pred eEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEccc
Q psy13032 9 KVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEA 69 (190)
Q Consensus 9 ~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEa 69 (190)
++++.......+..+...+.. ..+.+..++ ........+.+..+|++|+|-.
T Consensus 2 ~ilivdd~~~~~~~l~~~l~~-------~g~~v~~~~--~~~~a~~~~~~~~~dlil~D~~ 53 (121)
T 2pl1_A 2 RVLVVEDNALLRHHLKVQIQD-------AGHQVDDAE--DAKEADYYLNEHIPDIAIVDLG 53 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHH-------TTCEEEEES--SHHHHHHHHHHSCCSEEEECSC
T ss_pred eEEEEeCcHHHHHHHHHHHhh-------cCCEEEEeC--CHHHHHHHHhccCCCEEEEecC
Confidence 577777777666655544321 124443322 2222234455567899999964
No 178
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=27.23 E-value=39 Score=26.83 Aligned_cols=14 Identities=21% Similarity=0.318 Sum_probs=11.4
Q ss_pred ccEEEEcccccccC
Q psy13032 61 WQYLILDEAQAIVD 74 (190)
Q Consensus 61 w~~vIvDEaH~lkn 74 (190)
..++|+||+|.+..
T Consensus 131 ~~vlilDEi~~l~~ 144 (387)
T 2v1u_A 131 IYIIVLDEIDFLPK 144 (387)
T ss_dssp EEEEEEETTTHHHH
T ss_pred eEEEEEccHhhhcc
Confidence 44899999999854
No 179
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=26.79 E-value=1.3e+02 Score=23.83 Aligned_cols=18 Identities=17% Similarity=0.272 Sum_probs=13.9
Q ss_pred hccCccEEEEcccccccC
Q psy13032 57 NRIKWQYLILDEAQAIVD 74 (190)
Q Consensus 57 ~~~~w~~vIvDEaH~lkn 74 (190)
......+|++||+|.+..
T Consensus 102 ~~~~~~vl~iDEid~l~~ 119 (322)
T 1xwi_A 102 RENKPSIIFIDEIDSLCG 119 (322)
T ss_dssp HHTSSEEEEEETTTGGGC
T ss_pred HhcCCcEEEeecHHHhcc
Confidence 345677999999999844
No 180
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=26.74 E-value=47 Score=25.17 Aligned_cols=41 Identities=17% Similarity=0.029 Sum_probs=25.6
Q ss_pred CccEEEEcccccccCcccccccchhhhhhhHHHHHHhcC-----------CcCcEEEEecCCC
Q psy13032 60 KWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGF-----------SCRNRLLLSGTPI 111 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l-----------~~~~r~lLTgTP~ 111 (190)
.-..+++||+|.+... ......+.+..- ....++++|+++-
T Consensus 100 ~~~~l~lDEi~~l~~~-----------~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~ 151 (265)
T 2bjv_A 100 DGGTLFLDELATAPMM-----------VQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNAD 151 (265)
T ss_dssp TTSEEEEESGGGSCHH-----------HHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSC
T ss_pred CCcEEEEechHhcCHH-----------HHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcC
Confidence 3469999999998541 333344444321 2456788888773
No 181
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=26.55 E-value=1.2e+02 Score=18.85 Aligned_cols=52 Identities=15% Similarity=0.224 Sum_probs=29.8
Q ss_pred eEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEccc
Q psy13032 9 KVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEA 69 (190)
Q Consensus 9 ~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEa 69 (190)
++++.......+..+...+.. ..+.+..++ ........+.+..+|+||+|-.
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~-------~~~~v~~~~--~~~~a~~~~~~~~~dlvl~D~~ 54 (116)
T 3a10_A 3 RILVVDDEPNIRELLKEELQE-------EGYEIDTAE--NGEEALKKFFSGNYDLVILDIE 54 (116)
T ss_dssp EEEEECSCHHHHHHHHHHHHH-------TTCEEEEES--SHHHHHHHHHHSCCSEEEECSC
T ss_pred EEEEEeCCHHHHHHHHHHHHH-------CCCEEEEeC--CHHHHHHHHhcCCCCEEEEECC
Confidence 577777777766655544321 134554332 2223334455667999999964
No 182
>1rxd_A Protein tyrosine phosphatase type IVA, member 1; protein tyrosine phosphatase IVA1...; structural genomics, NYSGXRC, unknown function, PSI; 1.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1xm2_A 1zck_A 1r6h_A 1v3a_A
Probab=26.38 E-value=42 Score=23.13 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=20.4
Q ss_pred CcEEEEecCCCCCCHHHHHHHHH
Q psy13032 101 RNRLLLSGTPIQNSMAELWALLH 123 (190)
Q Consensus 101 ~~r~lLTgTP~~n~~~el~~ll~ 123 (190)
..+++.|+.|..++..|+|.++.
T Consensus 15 ~~~~i~s~~p~~~t~~df~~~l~ 37 (159)
T 1rxd_A 15 NMRFLITHNPTNATLNKFIEELK 37 (159)
T ss_dssp TEEEEECCCCCGGGHHHHHHHHH
T ss_pred CceEEEeCCCccccHHHHHHHHH
Confidence 45899999999999999988876
No 183
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=26.28 E-value=89 Score=19.79 Aligned_cols=54 Identities=9% Similarity=0.127 Sum_probs=31.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEccc
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEA 69 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEa 69 (190)
..++++.......+..+...+.. ..+.+..++ ........+.+..+|+||+|-.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~-------~~~~v~~~~--~~~~a~~~~~~~~~dlvi~D~~ 56 (123)
T 1xhf_A 3 TPHILIVEDELVTRNTLKSIFEA-------EGYDVFEAT--DGAEMHQILSEYDINLVIMDIN 56 (123)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHT-------TTCEEEEES--SHHHHHHHHHHSCCSEEEECSS
T ss_pred CceEEEEeCCHHHHHHHHHHHhh-------CCcEEEEeC--CHHHHHHHHhcCCCCEEEEcCC
Confidence 34678888887776665544311 235544332 2222334455668999999964
No 184
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=26.10 E-value=67 Score=24.61 Aligned_cols=15 Identities=20% Similarity=0.319 Sum_probs=12.7
Q ss_pred CccEEEEcccccccC
Q psy13032 60 KWQYLILDEAQAIVD 74 (190)
Q Consensus 60 ~w~~vIvDEaH~lkn 74 (190)
...++++||+|.+..
T Consensus 116 ~~~vl~iDEi~~l~~ 130 (310)
T 1ofh_A 116 QNGIVFIDEIDKICK 130 (310)
T ss_dssp HHCEEEEECGGGGSC
T ss_pred CCCEEEEEChhhcCc
Confidence 367999999999965
No 185
>3b7o_A Tyrosine-protein phosphatase non-receptor type 11; SHP2, PTPN11, tyrosine phosphatase, structural genomics, STR genomics consortium, SGC, deafness; 1.60A {Homo sapiens} PDB: 3jrl_A* 3mow_A* 3o5x_A*
Probab=25.93 E-value=41 Score=27.00 Aligned_cols=24 Identities=13% Similarity=0.459 Sum_probs=20.7
Q ss_pred cCcEEEEecCCCCCCHHHHHHHHH
Q psy13032 100 CRNRLLLSGTPIQNSMAELWALLH 123 (190)
Q Consensus 100 ~~~r~lLTgTP~~n~~~el~~ll~ 123 (190)
...+++.|-.|+++.+.|+|.|+.
T Consensus 110 ~~~~yIatQgPl~~T~~dFW~MVw 133 (316)
T 3b7o_A 110 PKKSYIATQGCLQNTVNDFWRMVF 133 (316)
T ss_dssp --CCEEEEECCCTTTHHHHHHHHH
T ss_pred ccceEEEECCCccccHHHHHHHHH
Confidence 456899999999999999999987
No 186
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=25.73 E-value=2e+02 Score=21.16 Aligned_cols=54 Identities=13% Similarity=0.087 Sum_probs=33.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEccc
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEA 69 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEa 69 (190)
..+|++.......+..+...+.. ..++|..++ ........+.+..+|+||+|-.
T Consensus 23 ~~~ILivdd~~~~~~~l~~~L~~-------~g~~v~~~~--~~~~al~~~~~~~~dlvllD~~ 76 (250)
T 3r0j_A 23 EARVLVVDDEANIVELLSVSLKF-------QGFEVYTAT--NGAQALDRARETRPDAVILDVX 76 (250)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHH-------TTCEEEEES--SHHHHHHHHHHHCCSEEEEESC
T ss_pred CceEEEEECCHHHHHHHHHHHHH-------CCCEEEEEC--CHHHHHHHHHhCCCCEEEEeCC
Confidence 57889999888777766554321 235555432 2233334555668999999954
No 187
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=25.35 E-value=34 Score=22.56 Aligned_cols=55 Identities=15% Similarity=-0.002 Sum_probs=33.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEccc
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEA 69 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEa 69 (190)
..++++.......+..+...+.. .+.+.|+.++ ........+.+..+|+||+|-.
T Consensus 14 ~~~ilivdd~~~~~~~l~~~L~~------~g~~~v~~~~--~~~~a~~~l~~~~~dlvi~D~~ 68 (135)
T 3snk_A 14 RKQVALFSSDPNFKRDVATRLDA------LAIYDVRVSE--TDDFLKGPPADTRPGIVILDLG 68 (135)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHH------TSSEEEEEEC--GGGGGGCCCTTCCCSEEEEEEE
T ss_pred CcEEEEEcCCHHHHHHHHHHHhh------cCCeEEEEec--cHHHHHHHHhccCCCEEEEeCC
Confidence 35788888888777766654321 1225555332 2333334456678999999953
No 188
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=25.23 E-value=1.9e+02 Score=20.75 Aligned_cols=84 Identities=11% Similarity=0.017 Sum_probs=46.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEcccccccCcccccccchhhh
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYSYLNDIER 86 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~ 86 (190)
.+++++.......+..+...+.. ..+.|+.++ ........+.+..+|+||+|-.---.
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~-------~g~~v~~~~--~~~~a~~~~~~~~~dlvllD~~l~~~------------- 64 (233)
T 1ys7_A 7 SPRVLVVDDDSDVLASLERGLRL-------SGFEVATAV--DGAEALRSATENRPDAIVLDINMPVL------------- 64 (233)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHH-------TTCEEEEES--SHHHHHHHHHHSCCSEEEEESSCSSS-------------
T ss_pred CCeEEEEeCCHHHHHHHHHHHHh-------CCCEEEEEC--CHHHHHHHHHhCCCCEEEEeCCCCCC-------------
Confidence 46888998888777766654321 235554332 22233344556689999999643211
Q ss_pred hhhHHHHHHhcC-CcCcEEEEecCCCC
Q psy13032 87 EQSMRWKLLLGF-SCRNRLLLSGTPIQ 112 (190)
Q Consensus 87 ~~s~~~~~~~~l-~~~~r~lLTgTP~~ 112 (190)
..-...+.+... .....+++|+.+-.
T Consensus 65 ~g~~~~~~l~~~~~~~~ii~lt~~~~~ 91 (233)
T 1ys7_A 65 DGVSVVTALRAMDNDVPVCVLSARSSV 91 (233)
T ss_dssp CHHHHHHHHHHTTCCCCEEEEECCCTT
T ss_pred CHHHHHHHHHhcCCCCCEEEEEcCCCH
Confidence 222334444433 23446788876543
No 189
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=25.16 E-value=42 Score=21.44 Aligned_cols=53 Identities=15% Similarity=0.059 Sum_probs=31.2
Q ss_pred CeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEccc
Q psy13032 8 FKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEA 69 (190)
Q Consensus 8 l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEa 69 (190)
.++++.......+..+...+... .+.+..++ ........+.+..+|+||+|-.
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~-------g~~v~~~~--~~~~a~~~~~~~~~dlvi~d~~ 58 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGR-------GFTVDETT--DGKGSVEQIRRDRPDLVVLAVD 58 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHH-------TCEEEEEC--CHHHHHHHHHHHCCSEEEEESB
T ss_pred CeEEEEeCCHHHHHHHHHHHHhc-------CceEEEec--CHHHHHHHHHhcCCCEEEEeCC
Confidence 47888888887776666543221 24454332 2222233445567999999965
No 190
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=24.94 E-value=1.4e+02 Score=19.84 Aligned_cols=56 Identities=11% Similarity=-0.013 Sum_probs=31.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhc-cCccEEEEccc
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNR-IKWQYLILDEA 69 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~-~~w~~vIvDEa 69 (190)
.++|++.......+..+...+... ..+.. +............+.+ ..+|+||+|-.
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~------~g~~~-v~~~~~~~~a~~~l~~~~~~dlvi~d~~ 59 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGA------FSGMR-VEGAETVSDALAFLEADNTVDLILLDVN 59 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHH------CTTEE-EEEESSHHHHHHHHHTTCCCSEEEECC-
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhC------CCceE-EEEecCHHHHHHHHhccCCCCEEEEeCC
Confidence 467888888887777666543211 12322 2222222333345556 78999999964
No 191
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=24.72 E-value=60 Score=21.40 Aligned_cols=53 Identities=9% Similarity=0.111 Sum_probs=31.8
Q ss_pred CeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEccc
Q psy13032 8 FKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEA 69 (190)
Q Consensus 8 l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEa 69 (190)
.++++.......+..+...+.. ..+.++.++ ........+.+..+|+||+|-.
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~-------~g~~v~~~~--~~~~al~~l~~~~~dlvi~D~~ 56 (138)
T 3c3m_A 4 YTILVVDDSPMIVDVFVTMLER-------GGYRPITAF--SGEECLEALNATPPDLVLLDIM 56 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH-------TTCEEEEES--SHHHHHHHHHHSCCSEEEEESC
T ss_pred ceEEEEeCCHHHHHHHHHHHHH-------cCceEEEeC--CHHHHHHHHhccCCCEEEEeCC
Confidence 5788888888777766554321 234554332 2222334455667999999964
No 192
>2gjt_A Receptor-type tyrosine-protein phosphatase PTPro; tyrosine phosphatase, glepp1, PTPU2, structural genom structural genomics consortium, SGC; 2.15A {Homo sapiens} PDB: 2g59_A 2pi7_A
Probab=24.66 E-value=40 Score=26.74 Aligned_cols=25 Identities=8% Similarity=0.454 Sum_probs=22.3
Q ss_pred CcCcEEEEecCCCCCCHHHHHHHHH
Q psy13032 99 SCRNRLLLSGTPIQNSMAELWALLH 123 (190)
Q Consensus 99 ~~~~r~lLTgTP~~n~~~el~~ll~ 123 (190)
....++++|-.|+.+.+.|+|.|+.
T Consensus 89 ~~~~~yIatQgPl~~T~~dFW~MVw 113 (295)
T 2gjt_A 89 NSPQEYIATQGPLPETRNDFWKMVL 113 (295)
T ss_dssp SCTTCEEEECCCCGGGHHHHHHHHH
T ss_pred CCcccEEEecCCCccHHHHHHHHHH
Confidence 4556899999999999999999987
No 193
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=24.53 E-value=1.5e+02 Score=19.13 Aligned_cols=54 Identities=15% Similarity=0.050 Sum_probs=32.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEe-cHHHHHhcHHHhhccC-ccEEEEccc
Q psy13032 6 PDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVIT-SYQLVVSDFKYFNRIK-WQYLILDEA 69 (190)
Q Consensus 6 p~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvit-sy~~~~~~~~~l~~~~-w~~vIvDEa 69 (190)
+..++++.......+..+...+.. ..++|+.+ +.+.+ ...+.+.. +|+||+|-.
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~-------~g~~v~~~~~~~~a---~~~~~~~~~~dlvi~D~~ 61 (136)
T 3hdv_A 6 ARPLVLVVDDNAVNREALILYLKS-------RGIDAVGADGAEEA---RLYLHYQKRIGLMITDLR 61 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHH-------TTCCEEEESSHHHH---HHHHHHCTTEEEEEECSC
T ss_pred CCCeEEEECCCHHHHHHHHHHHHH-------cCceEEEeCCHHHH---HHHHHhCCCCcEEEEecc
Confidence 356888898888877766654321 13555543 33322 23344444 999999964
No 194
>2b49_A Protein tyrosine phosphatase, non-receptor type 3; human, STRU genomics, structural genomics consortium, SGC, hydrolase; 1.54A {Homo sapiens}
Probab=24.49 E-value=54 Score=25.82 Aligned_cols=22 Identities=18% Similarity=0.643 Sum_probs=20.5
Q ss_pred cEEEEecCCCCCCHHHHHHHHH
Q psy13032 102 NRLLLSGTPIQNSMAELWALLH 123 (190)
Q Consensus 102 ~r~lLTgTP~~n~~~el~~ll~ 123 (190)
.++++|-.|+.+.+.|+|.|+.
T Consensus 86 ~~yIatQgPl~~T~~dFW~MVw 107 (287)
T 2b49_A 86 NKYIATQGPLPHTCAQFWQVVW 107 (287)
T ss_dssp EEEEEECCCCTTTHHHHHHHHH
T ss_pred ceEEEECCCChHHHHHHHHHHh
Confidence 5799999999999999999987
No 195
>1l8k_A T-cell protein-tyrosine phosphatase; hydrolase; 2.56A {Homo sapiens} SCOP: c.45.1.2
Probab=24.48 E-value=52 Score=26.35 Aligned_cols=24 Identities=17% Similarity=0.592 Sum_probs=21.5
Q ss_pred cCcEEEEecCCCCCCHHHHHHHHH
Q psy13032 100 CRNRLLLSGTPIQNSMAELWALLH 123 (190)
Q Consensus 100 ~~~r~lLTgTP~~n~~~el~~ll~ 123 (190)
...++++|-.|+.+.+.|+|.|+.
T Consensus 79 ~~~~yIatQgPl~~T~~dFW~MVw 102 (314)
T 1l8k_A 79 AQRSYILTQGPLPNTCCHFWLMVW 102 (314)
T ss_dssp GTEEEEEEECCCTTTHHHHHHHHH
T ss_pred CCCeEEEECCCChhhHHHHHHHHH
Confidence 356899999999999999999987
No 196
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=24.17 E-value=1e+02 Score=24.21 Aligned_cols=16 Identities=19% Similarity=0.297 Sum_probs=12.9
Q ss_pred cCccEEEEcccccccC
Q psy13032 59 IKWQYLILDEAQAIVD 74 (190)
Q Consensus 59 ~~w~~vIvDEaH~lkn 74 (190)
....+|++||+|.+-.
T Consensus 109 ~~~~vl~iDEid~l~~ 124 (322)
T 3eie_A 109 NKPSIIFIDQVDALTG 124 (322)
T ss_dssp TSSEEEEEECGGGGSC
T ss_pred cCCeEEEechhhhhhc
Confidence 4557999999999864
No 197
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=24.14 E-value=33 Score=29.55 Aligned_cols=13 Identities=31% Similarity=0.506 Sum_probs=10.8
Q ss_pred CccEEEEcccccc
Q psy13032 60 KWQYLILDEAQAI 72 (190)
Q Consensus 60 ~w~~vIvDEaH~l 72 (190)
.+.+||+|||.++
T Consensus 414 ~~rlvvlDEA~km 426 (483)
T 3euj_A 414 PCRLLFLDQAARL 426 (483)
T ss_dssp CCCEEEESSGGGS
T ss_pred ceeEEEEeccccC
Confidence 6889999999554
No 198
>2oc3_A Tyrosine-protein phosphatase non-receptor type 18; protein tyrosine phosphatase, human, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=23.89 E-value=44 Score=26.61 Aligned_cols=24 Identities=13% Similarity=0.459 Sum_probs=21.7
Q ss_pred cCcEEEEecCCCCCCHHHHHHHHH
Q psy13032 100 CRNRLLLSGTPIQNSMAELWALLH 123 (190)
Q Consensus 100 ~~~r~lLTgTP~~n~~~el~~ll~ 123 (190)
...++++|-.|+.+.+.|+|.|+.
T Consensus 101 ~~~~yIatQgPl~~T~~dFW~MVw 124 (303)
T 2oc3_A 101 GSLAYIATQGPLPHTLLDFWRLVW 124 (303)
T ss_dssp SSEEEEEECCCCGGGHHHHHHHHH
T ss_pred CcceEEEeCCCChhHHHHHHHHHe
Confidence 456899999999999999999987
No 199
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=23.77 E-value=2e+02 Score=20.48 Aligned_cols=81 Identities=11% Similarity=0.010 Sum_probs=44.4
Q ss_pred CeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEcccccccCcccccccchhhhh
Q psy13032 8 FKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYSYLNDIERE 87 (190)
Q Consensus 8 l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~ 87 (190)
+++++.......+..+...+.. ..+.|..++ ........+.+..+|+||+|-.---. .
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~-------~g~~v~~~~--~~~~a~~~~~~~~~dlvllD~~l~~~-------------~ 60 (225)
T 1kgs_A 3 VRVLVVEDERDLADLITEALKK-------EMFTVDVCY--DGEEGMYMALNEPFDVVILDIMLPVH-------------D 60 (225)
T ss_dssp CEEEEECSSHHHHHHHHHHHHH-------TTCEEEEES--SHHHHHHHHHHSCCSEEEEESCCSSS-------------C
T ss_pred ceEEEEeCCHHHHHHHHHHHHH-------CCCEEEEEC--CHHHHHHHHhcCCCCEEEEeCCCCCC-------------C
Confidence 5788888888777766554321 235554332 22223344556689999999643211 2
Q ss_pred hhHHHHHHhcC-CcCcEEEEecCC
Q psy13032 88 QSMRWKLLLGF-SCRNRLLLSGTP 110 (190)
Q Consensus 88 ~s~~~~~~~~l-~~~~r~lLTgTP 110 (190)
.-...+.+... .....+++|+.+
T Consensus 61 g~~~~~~lr~~~~~~~ii~ls~~~ 84 (225)
T 1kgs_A 61 GWEILKSMRESGVNTPVLMLTALS 84 (225)
T ss_dssp HHHHHHHHHHTTCCCCEEEEESSC
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCC
Confidence 22333444443 233567788754
No 200
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=23.56 E-value=35 Score=26.87 Aligned_cols=14 Identities=36% Similarity=0.601 Sum_probs=11.7
Q ss_pred ccEEEEcccccccC
Q psy13032 61 WQYLILDEAQAIVD 74 (190)
Q Consensus 61 w~~vIvDEaH~lkn 74 (190)
-.++++||+|++..
T Consensus 145 ~~vl~iDEi~~l~~ 158 (350)
T 1g8p_A 145 RGYLYIDECNLLED 158 (350)
T ss_dssp TEEEEETTGGGSCH
T ss_pred CCEEEEeChhhCCH
Confidence 46899999999854
No 201
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=23.34 E-value=59 Score=23.60 Aligned_cols=21 Identities=14% Similarity=-0.050 Sum_probs=15.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHh
Q psy13032 7 DFKVVPYWGSPQERKILRQFW 27 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~ 27 (190)
..+|++.......+..+...+
T Consensus 61 ~~~ILiVdDd~~~~~~l~~~L 81 (206)
T 3mm4_A 61 GKRVLVVDDNFISRKVATGKL 81 (206)
T ss_dssp TCEEEEECSCHHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHH
Confidence 568899998888777666543
No 202
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=23.34 E-value=92 Score=24.66 Aligned_cols=13 Identities=23% Similarity=0.276 Sum_probs=11.1
Q ss_pred cEEEEcccccccC
Q psy13032 62 QYLILDEAQAIVD 74 (190)
Q Consensus 62 ~~vIvDEaH~lkn 74 (190)
.++++||+|.+..
T Consensus 191 ~vl~IDEi~~l~~ 203 (368)
T 3uk6_A 191 GVLFIDEVHMLDI 203 (368)
T ss_dssp CEEEEESGGGSBH
T ss_pred ceEEEhhccccCh
Confidence 5999999999853
No 203
>1fpr_A Protein-tyrosine phosphatase 1C; protein tyrosine phosphatase, substrate specificity, residue shift, signaling protein; HET: PTR; 2.50A {Homo sapiens} SCOP: c.45.1.2 PDB: 1gwz_A
Probab=23.29 E-value=43 Score=26.33 Aligned_cols=23 Identities=9% Similarity=0.365 Sum_probs=21.5
Q ss_pred CcEEEEecCCCCCCHHHHHHHHH
Q psy13032 101 RNRLLLSGTPIQNSMAELWALLH 123 (190)
Q Consensus 101 ~~r~lLTgTP~~n~~~el~~ll~ 123 (190)
..++++|-.|+.+.+.|+|.|+.
T Consensus 76 ~~~yIatQgPl~~T~~dFW~MVw 98 (284)
T 1fpr_A 76 AKTYIASQGCLEATVNDFWQMAW 98 (284)
T ss_dssp CCEEECBBCCCGGGHHHHHHHHH
T ss_pred cceEEEeCCCChhhHHHHHHHHh
Confidence 57899999999999999999987
No 204
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=23.15 E-value=1.6e+02 Score=19.07 Aligned_cols=56 Identities=11% Similarity=-0.145 Sum_probs=31.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhc-----cCccEEEEccc
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNR-----IKWQYLILDEA 69 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~-----~~w~~vIvDEa 69 (190)
..+|++.......+..+...+.. ..+...+............+.+ ..+|+||+|-.
T Consensus 9 ~~~iLivdd~~~~~~~l~~~l~~-------~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~ 69 (146)
T 3ilh_A 9 IDSVLLIDDDDIVNFLNTTIIRM-------THRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDIN 69 (146)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHT-------TCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESS
T ss_pred cceEEEEeCCHHHHHHHHHHHHh-------cCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCC
Confidence 35788888887776665544311 1221122222233333344555 78999999964
No 205
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=23.10 E-value=1.5e+02 Score=19.67 Aligned_cols=56 Identities=5% Similarity=0.118 Sum_probs=30.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhc-------cCccEEEEccc
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNR-------IKWQYLILDEA 69 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~-------~~w~~vIvDEa 69 (190)
..++++.......+..+...+.. . .+...+............+.+ ..+|+||+|-.
T Consensus 8 ~~~ILivdd~~~~~~~l~~~L~~------~-~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~ 70 (149)
T 1i3c_A 8 PKVILLVEDSKADSRLVQEVLKT------S-TIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLN 70 (149)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHS------C-CSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSC
T ss_pred CCeEEEEECCHHHHHHHHHHHHh------c-CCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCC
Confidence 46788888888777766654311 1 222222222222222233332 46899999964
No 206
>2h4v_A Receptor-type tyrosine-protein phosphatase gamma; tyrosine receptor phosphatase, human, structural GENO structural genomics consortium, SGC; HET: FLC; 1.55A {Homo sapiens} PDB: 3qcd_A 3qcc_A 3qcb_A 3qce_A* 3qcf_A* 3qcg_A* 3qch_A* 3qci_A* 3qcj_A* 3qck_A* 2pbn_A 2hy3_A 3qcm_A* 3qcl_A* 3qcn_A
Probab=23.08 E-value=44 Score=26.87 Aligned_cols=25 Identities=8% Similarity=0.504 Sum_probs=22.1
Q ss_pred CcCcEEEEecCCCCCCHHHHHHHHH
Q psy13032 99 SCRNRLLLSGTPIQNSMAELWALLH 123 (190)
Q Consensus 99 ~~~~r~lLTgTP~~n~~~el~~ll~ 123 (190)
....++++|-.|+.+.+.|+|.|+.
T Consensus 109 ~~~~~yIaTQgPl~~T~~dFW~MVw 133 (320)
T 2h4v_A 109 NKAKAYIATQGPLKSTFEDFWRMIW 133 (320)
T ss_dssp SCTTCEEEECCCCGGGHHHHHHHHH
T ss_pred CCcceEEEecCCchHHHHHHHHHHH
Confidence 3456899999999999999999987
No 207
>4grz_A Tyrosine-protein phosphatase non-receptor type 6; phosphatase domain, hydrolase; 1.37A {Homo sapiens} PDB: 4gry_A 4gs0_A* 1gwz_A 1fpr_A*
Probab=22.81 E-value=49 Score=26.00 Aligned_cols=23 Identities=9% Similarity=0.365 Sum_probs=21.1
Q ss_pred CcEEEEecCCCCCCHHHHHHHHH
Q psy13032 101 RNRLLLSGTPIQNSMAELWALLH 123 (190)
Q Consensus 101 ~~r~lLTgTP~~n~~~el~~ll~ 123 (190)
..++++|-.|+.+.+.|+|.|+.
T Consensus 78 ~~~yIatQ~Pl~~T~~dFW~MVw 100 (288)
T 4grz_A 78 AKTYIASQGCLEATVNDFWQMAW 100 (288)
T ss_dssp CCCEEEECCCCGGGHHHHHHHHH
T ss_pred cceeEEcCCCchHHHHHHHHHHH
Confidence 56899999999999999999986
No 208
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=22.74 E-value=1e+02 Score=20.12 Aligned_cols=55 Identities=9% Similarity=0.124 Sum_probs=31.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEe-cHHHHHhcHHHhhc------cCccEEEEccc
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVIT-SYQLVVSDFKYFNR------IKWQYLILDEA 69 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvit-sy~~~~~~~~~l~~------~~w~~vIvDEa 69 (190)
..++++.......+..+...+...+ ..+.|..+ +.+. ....+.+ ..+|+||+|-.
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g-----~~~~v~~~~~~~~---a~~~l~~~~~~~~~~~dlii~D~~ 68 (143)
T 2qvg_A 7 KVDILYLEDDEVDIQSVERVFHKIS-----SLIKIEIAKSGNQ---ALDMLYGRNKENKIHPKLILLDIN 68 (143)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHC-----TTCCEEEESSHHH---HHHHHHTCTTCCCCCCSEEEEETT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhC-----CCceEEEECCHHH---HHHHHHhcccccCCCCCEEEEecC
Confidence 4688899888877776665432221 11134333 3332 2234443 67999999964
No 209
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=22.34 E-value=53 Score=28.98 Aligned_cols=40 Identities=30% Similarity=0.376 Sum_probs=25.8
Q ss_pred cCccEEEEcccccccCcccccccchhhhhhhHHHHHHhcCCc-CcEEEEecCCCCC
Q psy13032 59 IKWQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSC-RNRLLLSGTPIQN 113 (190)
Q Consensus 59 ~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~s~~~~~~~~l~~-~~r~lLTgTP~~n 113 (190)
-.|+.|+|||+|-.-. .+ +..+..+.. ...+++.|-|-|.
T Consensus 206 ~~~~~ilVDEfQDt~~------------~Q---~~ll~~L~~~~~~l~~vGD~~Qs 246 (673)
T 1uaa_A 206 NKIRYLLVDEYQDTNT------------SQ---YELVKLLVGSRARFTVVGDDDQS 246 (673)
T ss_dssp TTCSEEEESCGGGCBH------------HH---HHHHHHHHTTTCCEEEECCGGGC
T ss_pred hhCcEEEEeccccCCH------------HH---HHHHHHHhcCCCeEEEEeCchhh
Confidence 4789999999997633 23 333333322 3457888988664
No 210
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=22.24 E-value=1.7e+02 Score=19.01 Aligned_cols=83 Identities=12% Similarity=0.149 Sum_probs=44.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEcccccccCcccccccchhhh
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYSYLNDIER 86 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~ 86 (190)
.++|++.......+..+...+... ..+.++ .+..........+.+..+|+||+|-..--.
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~------~~~~~v-~~~~~~~~al~~l~~~~~dlvi~d~~l~~~------------- 68 (143)
T 2qv0_A 9 KMKVIIVEDEFLAQQELSWLINTH------SQMEIV-GSFDDGLDVLKFLQHNKVDAIFLDINIPSL------------- 68 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHH------SCCEEE-EEESCHHHHHHHHHHCCCSEEEECSSCSSS-------------
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhC------CCceEE-EEeCCHHHHHHHHHhCCCCEEEEecCCCCC-------------
Confidence 468889998887777666543221 234433 222222233344555679999999643211
Q ss_pred hhhHHHHHHhcCCcCc-EEEEecC
Q psy13032 87 EQSMRWKLLLGFSCRN-RLLLSGT 109 (190)
Q Consensus 87 ~~s~~~~~~~~l~~~~-r~lLTgT 109 (190)
..-...+.+....... .+++|+.
T Consensus 69 ~g~~~~~~l~~~~~~~~ii~~s~~ 92 (143)
T 2qv0_A 69 DGVLLAQNISQFAHKPFIVFITAW 92 (143)
T ss_dssp CHHHHHHHHTTSTTCCEEEEEESC
T ss_pred CHHHHHHHHHccCCCceEEEEeCC
Confidence 2233444555543333 5677775
No 211
>2bzl_A Tyrosine-protein phosphatase, non-receptor type 14; PTPN14, hydrolase; 1.65A {Homo sapiens}
Probab=22.22 E-value=63 Score=25.98 Aligned_cols=22 Identities=9% Similarity=0.481 Sum_probs=20.4
Q ss_pred cEEEEecCCCCCCHHHHHHHHH
Q psy13032 102 NRLLLSGTPIQNSMAELWALLH 123 (190)
Q Consensus 102 ~r~lLTgTP~~n~~~el~~ll~ 123 (190)
.++++|-.|+++.+.|+|.|+.
T Consensus 115 ~~yIaTQgPl~~T~~dFW~MVw 136 (325)
T 2bzl_A 115 WHYIATQGPLPHTCHDFWQMVW 136 (325)
T ss_dssp EEEEEECCCCTTTHHHHHHHHH
T ss_pred ceEEEEcCCCcchHHHHHHHHh
Confidence 4789999999999999999987
No 212
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=22.20 E-value=1.8e+02 Score=21.87 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=13.2
Q ss_pred hccCccEEEEccccccc
Q psy13032 57 NRIKWQYLILDEAQAIV 73 (190)
Q Consensus 57 ~~~~w~~vIvDEaH~lk 73 (190)
......++++||+|.+-
T Consensus 107 ~~~~~~vl~iDEid~l~ 123 (285)
T 3h4m_A 107 KEKAPSIIFIDEIDAIA 123 (285)
T ss_dssp HHTCSEEEEEETTHHHH
T ss_pred HHcCCeEEEEECHHHhc
Confidence 33456799999999984
No 213
>2p6x_A Tyrosine-protein phosphatase non-receptor type 22; tyrosine phosphatase, lymphoid phosphatase, PEP, LYP, struct genomics; 1.90A {Homo sapiens} PDB: 3h2x_A 3brh_A 2qct_A* 2qcj_A* 3olr_A* 3omh_A*
Probab=22.00 E-value=47 Score=26.56 Aligned_cols=24 Identities=8% Similarity=0.495 Sum_probs=21.5
Q ss_pred cCcEEEEecCCCCCCHHHHHHHHH
Q psy13032 100 CRNRLLLSGTPIQNSMAELWALLH 123 (190)
Q Consensus 100 ~~~r~lLTgTP~~n~~~el~~ll~ 123 (190)
.+.++++|-.|+.+.+.|+|.|+.
T Consensus 95 ~~~~yIatQgPl~~T~~dFW~MVw 118 (309)
T 2p6x_A 95 GPKAYIATQGPLSTTLLDFWRMIW 118 (309)
T ss_dssp EEEEEEEECCCCGGGHHHHHHHHH
T ss_pred CcceEEEeCCCChhHHHHHHHHHH
Confidence 346799999999999999999987
No 214
>3b1s_A Flagellar biosynthetic protein FLHB; type III secretion system, protein transport, MEMB protein; 2.55A {Aquifex aeolicus}
Probab=27.01 E-value=20 Score=21.13 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=11.0
Q ss_pred hcccCCCCCccEEEec
Q psy13032 30 KNLHTKDASFHVVITS 45 (190)
Q Consensus 30 ~~~~~~~~~~dvvits 45 (190)
+.....-..+|||||+
T Consensus 37 ~~m~~~Vp~AdvVItN 52 (52)
T 3b1s_A 37 SRMMAEVPKATVVITN 52 (52)
Confidence 3444456788999986
No 215
>3b0z_A Flagellar biosynthetic protein FLHB; type III secretion system, protein transport, MEMB protein; 2.45A {Salmonella enterica subsp}
Probab=26.99 E-value=20 Score=21.13 Aligned_cols=16 Identities=13% Similarity=0.283 Sum_probs=11.0
Q ss_pred hcccCCCCCccEEEec
Q psy13032 30 KNLHTKDASFHVVITS 45 (190)
Q Consensus 30 ~~~~~~~~~~dvvits 45 (190)
+.....-..+|||||+
T Consensus 37 ~~m~~~Vp~AdvVItN 52 (52)
T 3b0z_A 37 RRMMEDVPKADVIVTN 52 (52)
Confidence 3444456788999986
No 216
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=21.40 E-value=1.6e+02 Score=18.55 Aligned_cols=53 Identities=11% Similarity=0.030 Sum_probs=31.8
Q ss_pred CeEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEccc
Q psy13032 8 FKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEA 69 (190)
Q Consensus 8 l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEa 69 (190)
.++++.......+..+...... ..+.+..++ ........+.+..+|+||+|-.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~-------~g~~v~~~~--~~~~al~~~~~~~~dlii~D~~ 55 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRK-------EGYEVHCAH--DGNEAVEMVEELQPDLILLDIM 55 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH-------TTCEEEEES--SHHHHHHHHHTTCCSEEEEETT
T ss_pred CeEEEEECCHHHHHHHHHHHHh-------CCEEEEEeC--CHHHHHHHHhhCCCCEEEEeCC
Confidence 4677888877776666544321 125554332 2333345566778999999964
No 217
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=21.30 E-value=1.6e+02 Score=18.55 Aligned_cols=54 Identities=17% Similarity=0.177 Sum_probs=30.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhhcccCCCCCc-cEEEecHHHHHhcHHHhhccCccEEEEccc
Q psy13032 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASF-HVVITSYQLVVSDFKYFNRIKWQYLILDEA 69 (190)
Q Consensus 7 ~l~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~-dvvitsy~~~~~~~~~l~~~~w~~vIvDEa 69 (190)
.+++++.......+..+...+.. ..+ .+..++ ........+.+..+|+||+|-.
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~~-------~~~~~v~~~~--~~~~a~~~~~~~~~dlvi~D~~ 58 (128)
T 1jbe_A 4 ELKFLVVDDFSTMRRIVRNLLKE-------LGFNNVEEAE--DGVDALNKLQAGGYGFVISDWN 58 (128)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHH-------TTCCCEEEES--SHHHHHHHHTTCCCCEEEEESC
T ss_pred ccEEEEECCCHHHHHHHHHHHHH-------cCCcEEEeeC--CHHHHHHHHHhcCCCEEEEeCC
Confidence 46788888888777665554321 123 233222 1222234455667999999964
No 218
>3s3e_A Tyrosine-protein phosphatase 10D; differentiation, neurogenesis, signal transduction, developm protein, hydrolase; 2.40A {Drosophila melanogaster} PDB: 3s3f_A 3s3h_A* 3s3k_A*
Probab=21.14 E-value=49 Score=26.47 Aligned_cols=25 Identities=8% Similarity=0.502 Sum_probs=21.9
Q ss_pred CcCcEEEEecCCCCCCHHHHHHHHH
Q psy13032 99 SCRNRLLLSGTPIQNSMAELWALLH 123 (190)
Q Consensus 99 ~~~~r~lLTgTP~~n~~~el~~ll~ 123 (190)
....++++|-.|+.+.+.|+|.|+.
T Consensus 110 ~~~~~yIatQgPl~~T~~dFW~MVw 134 (307)
T 3s3e_A 110 NSPREFIVTQGPLHSTRDDFWRMCW 134 (307)
T ss_dssp SCTTSEEEECCCCGGGHHHHHHHHH
T ss_pred CCcceeEEecCCChhhHHHHHHHHH
Confidence 3456789999999999999999986
No 219
>4i8n_A Tyrosine-protein phosphatase non-receptor type 1; PTP1B, hydrolase-hydrolase inhibitor CO; HET: 1CG; 2.50A {Homo sapiens}
Probab=21.09 E-value=75 Score=25.89 Aligned_cols=24 Identities=17% Similarity=0.609 Sum_probs=21.4
Q ss_pred cCcEEEEecCCCCCCHHHHHHHHH
Q psy13032 100 CRNRLLLSGTPIQNSMAELWALLH 123 (190)
Q Consensus 100 ~~~r~lLTgTP~~n~~~el~~ll~ 123 (190)
...++++|-.|+.+.+.|+|.|+.
T Consensus 111 ~~~~yIatQgPl~~T~~dFW~MVw 134 (354)
T 4i8n_A 111 AQRSYILTQGPLPNTCGHFWEMVW 134 (354)
T ss_dssp TTEEEEEECCCCTTTHHHHHHHHH
T ss_pred CcceEEEeCCCCcccHHHHHHHHH
Confidence 356799999999999999999986
No 220
>1yfo_A D1, receptor protein tyrosine phosphatase alpha; hydrolase, signal transduction, glycoprotein, phosphorylation, signal; 2.25A {Mus musculus} SCOP: c.45.1.2
Probab=21.00 E-value=52 Score=26.19 Aligned_cols=24 Identities=13% Similarity=0.595 Sum_probs=21.7
Q ss_pred cCcEEEEecCCCCCCHHHHHHHHH
Q psy13032 100 CRNRLLLSGTPIQNSMAELWALLH 123 (190)
Q Consensus 100 ~~~r~lLTgTP~~n~~~el~~ll~ 123 (190)
...+++.|-.|+.+.+.|+|.|+.
T Consensus 96 ~~~~yIatQgPl~~T~~dFW~MVw 119 (302)
T 1yfo_A 96 EKNKFIAAQGPKEETVNDFWRMIW 119 (302)
T ss_dssp EEEEEEEECCCCGGGHHHHHHHHH
T ss_pred CcceEEEEhhcchhhHHHHHHHHh
Confidence 456899999999999999999987
No 221
>3s4o_A Protein tyrosine phosphatase-like protein; structural genomics, medical structural genomics of pathogen protozoa, MSGPP, unknown function; HET: MSE EPE; 2.30A {Leishmania major}
Probab=20.80 E-value=61 Score=22.43 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=20.0
Q ss_pred cEEEEecCCCCCCHHHHHHHHH
Q psy13032 102 NRLLLSGTPIQNSMAELWALLH 123 (190)
Q Consensus 102 ~r~lLTgTP~~n~~~el~~ll~ 123 (190)
.+++.|+.|..+.+.+.|.++.
T Consensus 23 ~~~i~tq~P~~~t~~~~~~~l~ 44 (167)
T 3s4o_A 23 FHFLILDAPSPSNLPTYIKELQ 44 (167)
T ss_dssp EEEEEECCCCGGGHHHHHHHHH
T ss_pred ceEEEeCCCchhhHHHHHHHHH
Confidence 3899999999999999998886
No 222
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=20.76 E-value=74 Score=26.64 Aligned_cols=12 Identities=25% Similarity=0.376 Sum_probs=10.8
Q ss_pred cEEEEccccccc
Q psy13032 62 QYLILDEAQAIV 73 (190)
Q Consensus 62 ~~vIvDEaH~lk 73 (190)
.++|+||+|++.
T Consensus 297 ~VliIDEa~~l~ 308 (456)
T 2c9o_A 297 GVLFVDEVHMLD 308 (456)
T ss_dssp CEEEEESGGGCB
T ss_pred eEEEEechhhcC
Confidence 699999999994
No 223
>3i36_A Vascular protein tyrosine phosphatase 1; PTP, hydrolase; 1.84A {Rattus norvegicus} PDB: 2nz6_A 2cfv_A
Probab=20.58 E-value=50 Score=26.83 Aligned_cols=25 Identities=12% Similarity=0.615 Sum_probs=22.1
Q ss_pred CcCcEEEEecCCCCCCHHHHHHHHH
Q psy13032 99 SCRNRLLLSGTPIQNSMAELWALLH 123 (190)
Q Consensus 99 ~~~~r~lLTgTP~~n~~~el~~ll~ 123 (190)
....++++|-.|+.+.+.|+|.|+.
T Consensus 109 ~~~~~yIatQgPl~~T~~dFW~MVw 133 (342)
T 3i36_A 109 HSKKDFIATQGPLPNTLKDFWRMVW 133 (342)
T ss_dssp SCTTSEEEECCCCGGGHHHHHHHHH
T ss_pred CCCceEEEECCCChhhHHHHHHHHH
Confidence 4556899999999999999999986
No 224
>4ge6_A Tyrosine-protein phosphatase non-receptor type 9; hydrolase-hydrolase inhibitor complex; HET: B26; 1.40A {Homo sapiens} PDB: 4ge2_A* 4ge5_A* 2pa5_A*
Probab=20.42 E-value=53 Score=26.29 Aligned_cols=25 Identities=16% Similarity=0.527 Sum_probs=22.1
Q ss_pred CcCcEEEEecCCCCCCHHHHHHHHH
Q psy13032 99 SCRNRLLLSGTPIQNSMAELWALLH 123 (190)
Q Consensus 99 ~~~~r~lLTgTP~~n~~~el~~ll~ 123 (190)
..+.+++.|-.|+.+.+.|+|.|+.
T Consensus 92 ~~~~~yIaTQgPl~~T~~dFW~MVw 116 (314)
T 4ge6_A 92 KQKNAYIGTQGPLENTYRDFWLMVW 116 (314)
T ss_dssp TEEEEEEEECCCCGGGHHHHHHHHH
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHH
Confidence 4456799999999999999999987
No 225
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=20.31 E-value=27 Score=23.29 Aligned_cols=31 Identities=19% Similarity=0.313 Sum_probs=23.9
Q ss_pred EEEecHHHHHhcHHHhhccCccEEEEccccccc
Q psy13032 41 VVITSYQLVVSDFKYFNRIKWQYLILDEAQAIV 73 (190)
Q Consensus 41 vvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lk 73 (190)
|+|++|..+. .+........+|++||.-++.
T Consensus 61 vII~aY~~~~--~~e~~~~~P~vV~vd~~N~i~ 91 (96)
T 1vc3_B 61 VILVAYGVFD--EEEARNLKPTVVLVDERNRIL 91 (96)
T ss_dssp EEEEEEEEEC--HHHHTTCCCEEEEECTTCCEE
T ss_pred EEEEECccCC--HHHHhcCCCEEEEECCCCCEE
Confidence 6778998764 345677889999999987764
No 226
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=20.26 E-value=69 Score=20.34 Aligned_cols=87 Identities=10% Similarity=0.045 Sum_probs=41.2
Q ss_pred eEEEEeCCHHHHHHHHHHhhhhcccCCCCCccEEEecHHHHHhcHHHhhccCccEEEEcccccccCcccccccchhhhhh
Q psy13032 9 KVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYSYLNDIEREQ 88 (190)
Q Consensus 9 ~v~~~~G~~~~r~~~~~~~~~~~~~~~~~~~dvvitsy~~~~~~~~~l~~~~w~~vIvDEaH~lkn~~~~~~~~~~~~~~ 88 (190)
++++.......+..+...+.. ..+.++.++ ........+.+..+|+||+|-.---. ..
T Consensus 3 ~ilivdd~~~~~~~l~~~L~~-------~~~~v~~~~--~~~~a~~~~~~~~~dlvi~D~~l~~~-------------~g 60 (124)
T 1mb3_A 3 KVLIVEDNELNMKLFHDLLEA-------QGYETLQTR--EGLSALSIARENKPDLILMDIQLPEI-------------SG 60 (124)
T ss_dssp EEEEECSCHHHHHHHHHHHHH-------TTCEEEEES--CHHHHHHHHHHHCCSEEEEESBCSSS-------------BH
T ss_pred EEEEEcCCHHHHHHHHHHHHH-------cCcEEEEeC--CHHHHHHHHhcCCCCEEEEeCCCCCC-------------CH
Confidence 577777777766665554321 134444332 22222334455678999999643211 22
Q ss_pred hHHHHHHhcC---CcCcEEEEecCCCCCCHHH
Q psy13032 89 SMRWKLLLGF---SCRNRLLLSGTPIQNSMAE 117 (190)
Q Consensus 89 s~~~~~~~~l---~~~~r~lLTgTP~~n~~~e 117 (190)
-...+.+... ..-..+++|+..-.....+
T Consensus 61 ~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~ 92 (124)
T 1mb3_A 61 LEVTKWLKEDDDLAHIPVVAVTAFAMKGDEER 92 (124)
T ss_dssp HHHHHHHHHSTTTTTSCEEEEC------CHHH
T ss_pred HHHHHHHHcCccccCCcEEEEECCCCHHHHHH
Confidence 2334444432 2234677887654444433
Done!