RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13032
(190 letters)
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 298
Score = 67.0 bits (162), Expect = 3e-14
Identities = 28/158 (17%), Positives = 62/158 (39%), Gaps = 12/158 (7%)
Query: 1 MERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIK 60
+ +++ + +I + + + ++I SY+ + ++ K
Sbjct: 133 VGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGK 192
Query: 61 WQYLILDEAQAIVDINVYSYLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWA 120
+I DE + + + + L + + R+L+SGTPIQN + E ++
Sbjct: 193 VGLVICDEGHRL------------KNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFS 240
Query: 121 LLHFIMPSMFDSHDEFNEWFSKDIESHAENKTSIDERE 158
L+HF+ + + EF + F I + S +R
Sbjct: 241 LVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRA 278
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 230
Score = 56.2 bits (134), Expect = 1e-10
Identities = 29/120 (24%), Positives = 63/120 (52%), Gaps = 13/120 (10%)
Query: 27 WDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYSYLNDIER 86
+ K + +++T+Y +++ D + ++W+Y+++DEAQ I +
Sbjct: 92 FHEDRSKIKLEDYDIILTTYAVLLRDTR-LKEVEWKYIVIDEAQNI------------KN 138
Query: 87 EQSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEWFSKDIES 146
Q+ +K + + R+ L+GTPI+N + +LW+++ F+ P + S+ EF F+ I+
Sbjct: 139 PQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKK 198
>d1tp6a_ d.17.4.12 (A:) Hypothetical protein PA1314 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 126
Score = 28.2 bits (63), Expect = 0.32
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 1 MERFVPDFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSD 52
M RF DF +V G ++ L + ++ + I L+ S
Sbjct: 31 MARFAEDFSMVTPHGVVLDKTALGEL--FRSKGGTRPGLRIEIDGESLLASG 80
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 206
Score = 27.5 bits (60), Expect = 0.85
Identities = 15/91 (16%), Positives = 25/91 (27%), Gaps = 16/91 (17%)
Query: 20 RKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVDINVYS 79
++ + K+ V T V+ K NR + LI DE +
Sbjct: 131 GIFGEEYVGEFSGRIKELKPLTVSTYDSAYVNAEKLGNR--FMLLIFDEVHHLPA----- 183
Query: 80 YLNDIEREQSMRWKLLLGFSCRNRLLLSGTP 110
++ RL L+ T
Sbjct: 184 ---------ESYVQIAQMSIAPFRLGLTATF 205
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 26.0 bits (56), Expect = 2.8
Identities = 15/87 (17%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Query: 25 QFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRIKWQYLILDEAQAIVD--INVYSYLN 82
+ +N +F +VIT+ Q + ++ ++ +D+ AI+ NV L+
Sbjct: 129 PKREKENFMQNLRNFKIVITTTQFLSKHYRELGHFD--FIFVDDVDAILKASKNVDKLLH 186
Query: 83 DIEREQSMRWKLLLGFSCRNRLLLSGT 109
+ ++ K +G + ++ + T
Sbjct: 187 LLGFHYDLKTKSWVGEARGCLMVSTAT 213
>d1k28d1 b.106.1.1 (D:4-200) Baseplate structural protein gp27
{Bacteriophage T4 [TaxId: 10665]}
Length = 197
Score = 25.6 bits (56), Expect = 3.4
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 23 LRQFWDMKNLHTKDASFHVVITSYQLVVSDFKYFNRI 59
+ QF+D KN+HTK ++ S RI
Sbjct: 48 MLQFYDSKNIHTKMDGNEIIQISVANANDINNVKTRI 84
>d2gyqa1 a.25.1.4 (A:1-160) Hypothetical ptotein RPA3308
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 160
Score = 25.1 bits (55), Expect = 4.9
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 166 IYSAHNKAEKSLYSSSRRASSPLL 189
IY A + K+L +A++ L
Sbjct: 22 IYYAEQQITKALPKMIEQATNRDL 45
>d2gs4a1 a.25.1.4 (A:3-161) Hypothetical protein YciF {Escherichia
coli [TaxId: 562]}
Length = 159
Score = 24.7 bits (54), Expect = 5.2
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 166 IYSAHNKAEKSLYSSSRRASSPLL 189
YSA + ++L +R S+ L
Sbjct: 15 TYSAEKQLTRALAKLARATSNEKL 38
>d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III
oxidase HemN {Escherichia coli [TaxId: 562]}
Length = 441
Score = 25.0 bits (53), Expect = 7.4
Identities = 15/92 (16%), Positives = 31/92 (33%)
Query: 80 YLNDIEREQSMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPSMFDSHDEFNEW 139
YL+ +E+E R L G GTP + A++ L+ + + + D
Sbjct: 82 YLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYLNKAQISRLMKLLRENFQFNADAEISI 141
Query: 140 FSKDIESHAENKTSIDEREYPIVLMLIYSAHN 171
E + + + + M + +
Sbjct: 142 EVDPREIELDVLDHLRAEGFNRLSMGVQDFNK 173
>d1l1sa_ c.114.1.1 (A:) Hypothetical protein MTH1491 {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 111
Score = 24.0 bits (52), Expect = 9.1
Identities = 10/48 (20%), Positives = 24/48 (50%)
Query: 7 DFKVVPYWGSPQERKILRQFWDMKNLHTKDASFHVVITSYQLVVSDFK 54
D++VV + E ++L +++NL S + + +Y + V+ +
Sbjct: 1 DYRVVFHIDEDDESRVLLLISNVRNLMADLESVRIEVVAYSMGVNVLR 48
>d1odha_ d.239.1.1 (A:) Mgcm1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 158
Score = 24.1 bits (52), Expect = 9.9
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 126 MPSMFDSHDEFNEW 139
+P + D F EW
Sbjct: 10 LPQNVKTTDWFQEW 23
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.135 0.415
Gapped
Lambda K H
0.267 0.0669 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 736,604
Number of extensions: 33057
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 16
Length of query: 190
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 110
Effective length of database: 1,309,196
Effective search space: 144011560
Effective search space used: 144011560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.2 bits)