BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13033
(148 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DMT|A Chain A, Structure Of Human Neutral Endopeptidase Complexed With
Phosphoramidon
pdb|1R1H|A Chain A, Structural Analysis Of Neprilysin With Various Specific
And Potent Inhibitors
pdb|1R1I|A Chain A, Structural Analysis Of Neprilysin With Various Specific
And Potent Inhibitors
pdb|1R1J|A Chain A, Structural Analysis Of Neprilysin With Various Specific
And Potent Inhibitors
pdb|1Y8J|A Chain A, Crystal Structure Of Human Nep Complexed With An
Imidazo[4,5- C]pyridine Inhibitor
pdb|2QPJ|A Chain A, Human Nep Complexed With A Bifunctional NepDPP IV
INHIBITOR
pdb|2YB9|A Chain A, Crystal Structure Of Human Neutral Endopeptidase Complexed
With A Heteroarylalanine Diacid
Length = 696
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 58/84 (69%), Gaps = 2/84 (2%)
Query: 62 RNQAKLMKQYMDTSADPCVDFYQYACGNWGKLNPIPKDKAAFDTFEMLRESLDSVLRDLL 121
++ A+L+ Q MD + +PC DF++YACG W K N IP+ + + F++LR+ L+ VL+D+L
Sbjct: 10 KSAARLI-QNMDATTEPCTDFFKYACGGWLKRNVIPETSSRYGNFDILRDELEVVLKDVL 68
Query: 122 EADISSDDCDSYVKAKNLYSSCIN 145
+ + ++D + KAK LY SCIN
Sbjct: 69 Q-EPKTEDIVAVQKAKALYRSCIN 91
>pdb|3DWB|A Chain A, Structure Of Human Ece-1 Complexed With Phosphoramidon
Length = 670
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 72 MDTSADPCVDFYQYACGNWGKLNPIPKDKAAFDTFEMLRESLDSVLRDLLEADISSDDCD 131
MD + DPC DF+ YACG W K NP+P + + TF L E ++++ LLE +S +
Sbjct: 15 MDPTVDPCHDFFSYACGGWIKANPVPDGHSRWGTFSNLWEHNQAIIKHLLENSTASVS-E 73
Query: 132 SYVKAKNLYSSCIN 145
+ KA+ Y +C+N
Sbjct: 74 AERKAQVYYRACMN 87
>pdb|3ZUK|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Zinc
Metalloprotease Zmp1 In Complex With Inhibitor
pdb|3ZUK|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Zinc
Metalloprotease Zmp1 In Complex With Inhibitor
Length = 699
Score = 32.0 bits (71), Expect = 0.14, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 71 YMDTSADPCVDFYQYACGNWGKLNPIPKDKAAFDTFEMLRESLDSVLRDLL 121
++D A P D + + G W + IP D+A F L + ++ +RDL+
Sbjct: 49 HIDADARPQDDLFGHVNGRWLAEHEIPADRATDGAFRSLFDRAETQVRDLI 99
>pdb|2RIO|A Chain A, Structure Of The Dual Enzyme Ire1 Reveals The Basis For
Catalysis And Regulation Of Non-conventional Splicing
pdb|2RIO|B Chain B, Structure Of The Dual Enzyme Ire1 Reveals The Basis For
Catalysis And Regulation Of Non-conventional Splicing
Length = 434
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 9/96 (9%)
Query: 33 YDNFNSDRENNVVKHPVFWEEQEDADTIRRNQAKLMKQYMDTSADPCVDF-----YQYAC 87
+D V++HP+FW + + + + + +L + D + + F +
Sbjct: 282 HDPLKRPTAMKVLRHPLFWPKSKKLEFLLKVSDRLEIENRDPPSALLMKFDAGSDFVIPS 341
Query: 88 GNWGKLNPIPKDKAAFDTFEMLRESLDSVLRDLLEA 123
G+W + DK D E R+ S L DLL A
Sbjct: 342 GDWT----VKFDKTFMDNLERYRKYHSSKLMDLLRA 373
>pdb|3LJ0|A Chain A, Ire1 Complexed With Adp And Quercetin
pdb|3LJ0|B Chain B, Ire1 Complexed With Adp And Quercetin
pdb|3LJ1|A Chain A, Ire1 Complexed With Cdk12 INHIBITOR III
pdb|3LJ1|B Chain B, Ire1 Complexed With Cdk12 INHIBITOR III
pdb|3LJ2|A Chain A, Ire1 Complexed With Jak Inhibitor I
pdb|3LJ2|B Chain B, Ire1 Complexed With Jak Inhibitor I
Length = 434
Score = 30.4 bits (67), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 9/96 (9%)
Query: 33 YDNFNSDRENNVVKHPVFWEEQEDADTIRRNQAKLMKQYMDTSADPCVDF-----YQYAC 87
+D V++HP+FW + + + + + +L + D + + F +
Sbjct: 282 HDPLKRPTAMKVLRHPLFWPKSKKLEFLLKVSDRLEIENRDPPSALLMKFDAGSDFVIPS 341
Query: 88 GNWGKLNPIPKDKAAFDTFEMLRESLDSVLRDLLEA 123
G+W + DK D E R+ S L DLL A
Sbjct: 342 GDWT----VKFDKTFMDNLERYRKYHSSKLMDLLRA 373
>pdb|3FBV|A Chain A, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|B Chain B, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|C Chain C, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|D Chain D, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|E Chain E, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|F Chain F, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|G Chain G, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|H Chain H, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|I Chain I, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|J Chain J, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|K Chain K, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|L Chain L, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|M Chain M, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3FBV|N Chain N, Crystal Structure Of The Oligomer Formed By The
Kinase-Ribonuclease Domain Of Ire1
pdb|3SDM|A Chain A, Structure Of Oligomeric KinaseRNASE IRE1 IN COMPLEX WITH
AN Oligonucleotide
pdb|3SDM|B Chain B, Structure Of Oligomeric KinaseRNASE IRE1 IN COMPLEX WITH
AN Oligonucleotide
pdb|3SDM|C Chain C, Structure Of Oligomeric KinaseRNASE IRE1 IN COMPLEX WITH
AN Oligonucleotide
pdb|3SDM|D Chain D, Structure Of Oligomeric KinaseRNASE IRE1 IN COMPLEX WITH
AN Oligonucleotide
pdb|3SDM|E Chain E, Structure Of Oligomeric KinaseRNASE IRE1 IN COMPLEX WITH
AN Oligonucleotide
pdb|3SDM|F Chain F, Structure Of Oligomeric KinaseRNASE IRE1 IN COMPLEX WITH
AN Oligonucleotide
pdb|3SDM|G Chain G, Structure Of Oligomeric KinaseRNASE IRE1 IN COMPLEX WITH
AN Oligonucleotide
Length = 448
Score = 30.0 bits (66), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 9/96 (9%)
Query: 33 YDNFNSDRENNVVKHPVFWEEQEDADTIRRNQAKLMKQYMDTSADPCVDF-----YQYAC 87
+D V++HP+FW + + + + + +L + D + + F +
Sbjct: 296 HDPLKRPTAMKVLRHPLFWPKSKKLEFLLKVSDRLEIENRDPPSALLMKFDAGSDFVIPS 355
Query: 88 GNWGKLNPIPKDKAAFDTFEMLRESLDSVLRDLLEA 123
G+W + DK D E R+ S L DLL A
Sbjct: 356 GDWT----VKFDKTFMDNLERYRKYHSSKLMDLLRA 387
>pdb|3SDJ|A Chain A, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|B Chain B, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|C Chain C, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|D Chain D, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|E Chain E, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|F Chain F, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|G Chain G, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|H Chain H, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|I Chain I, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|J Chain J, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|K Chain K, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|L Chain L, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|M Chain M, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
pdb|3SDJ|N Chain N, Structure Of Rnase-Inactive Point Mutant Of Oligomeric
KinaseRNASE Ire1
Length = 448
Score = 30.0 bits (66), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 9/96 (9%)
Query: 33 YDNFNSDRENNVVKHPVFWEEQEDADTIRRNQAKLMKQYMDTSADPCVDF-----YQYAC 87
+D V++HP+FW + + + + + +L + D + + F +
Sbjct: 296 HDPLKRPTAMKVLRHPLFWPKSKKLEFLLKVSDRLEIENRDPPSALLMKFDAGSDFVIPS 355
Query: 88 GNWGKLNPIPKDKAAFDTFEMLRESLDSVLRDLLEA 123
G+W + DK D E R+ S L DLL A
Sbjct: 356 GDWT----VKFDKTFMDNLERYRKYHSSKLMDLLRA 387
>pdb|3F8M|A Chain A, Crystal Structure Of Phnf From Mycobacterium Smegmatis
pdb|3F8M|B Chain B, Crystal Structure Of Phnf From Mycobacterium Smegmatis
Length = 248
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 94 NPIPKDKAAFDTFEMLRESLDSVLRDLL 121
+P P ++ + FE+ RE++ LR+LL
Sbjct: 34 DPFPAEREIAEQFEVARETVRQALRELL 61
>pdb|3O4Y|A Chain A, Crystal Structure Of Cad Domain Of The Plasmodium Vivax
Cdpk, Pvx_11610
Length = 196
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 19/84 (22%)
Query: 9 QRNVSDNFVY-----LDTKNFSSINT-DFLYDNFNSDRENNVVKHPVFWEEQEDADTIRR 62
+R +S +Y D N I T + + FN ++ N+ + V
Sbjct: 119 RRQLSKKLIYCAFRVFDVDNDGEITTAELAHVLFNGNKRGNITERDV------------- 165
Query: 63 NQAKLMKQYMDTSADPCVDFYQYA 86
NQ K M + +D + D +DFY+++
Sbjct: 166 NQVKKMIREVDKNGDGKIDFYEFS 189
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,404,705
Number of Sequences: 62578
Number of extensions: 171116
Number of successful extensions: 437
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 425
Number of HSP's gapped (non-prelim): 14
length of query: 148
length of database: 14,973,337
effective HSP length: 90
effective length of query: 58
effective length of database: 9,341,317
effective search space: 541796386
effective search space used: 541796386
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)