Query psy13033
Match_columns 148
No_of_seqs 120 out of 1108
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 17:43:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13033.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13033hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dwb_A ECE-1, endothelin-conve 99.9 1.9E-23 6.6E-28 187.9 7.8 89 56-147 1-89 (670)
2 1r1h_A Neprilysin; enkephalina 99.9 1.4E-22 4.8E-27 182.5 7.9 90 54-146 3-92 (696)
3 3zuk_A Endopeptidase, peptidas 99.8 4E-21 1.4E-25 174.2 2.7 89 58-146 35-126 (699)
4 1rw2_A ATP-dependent DNA helic 18.1 72 0.0025 23.2 2.5 61 74-147 32-92 (152)
5 1wr6_A ADP-ribosylation factor 16.9 1.5E+02 0.0051 20.3 3.8 34 112-145 15-49 (111)
6 1o3x_A ADP-ribosylation factor 16.3 3E+02 0.01 19.5 5.4 33 113-145 59-93 (140)
7 1wrd_A TOM1, target of MYB pro 13.3 3.1E+02 0.011 18.2 5.7 35 111-145 19-54 (103)
8 4b1v_M Phosphatase and actin r 13.3 71 0.0024 17.3 1.0 12 2-13 16-27 (32)
9 1oxz_A ADP-ribosylation factor 11.1 4E+02 0.014 19.8 5.0 34 112-145 83-118 (186)
10 1q2z_A ATP-dependent DNA helic 10.2 67 0.0023 22.2 0.3 59 75-146 2-60 (120)
No 1
>3dwb_A ECE-1, endothelin-converting enzyme 1; protein, disease mutation, glycoprotein, hirschsprung diseas hydrolase, membrane, metal-binding; HET: 5HD RDF; 2.38A {Homo sapiens} SCOP: d.92.1.0
Probab=99.88 E-value=1.9e-23 Score=187.85 Aligned_cols=89 Identities=31% Similarity=0.661 Sum_probs=82.1
Q ss_pred CHHHHHHHHHhHHHHcCCCCCCCCCcHHHhhhcccccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHhccCCCCChHHHH
Q psy13033 56 DADTIRRNQAKLMKQYMDTSADPCVDFYQYACGNWGKLNPIPKDKAAFDTFEMLRESLDSVLRDLLEADISSDDCDSYVK 135 (148)
Q Consensus 56 s~~Ci~~a~a~~l~s~md~svdPCdDFY~yvCG~W~k~~~ip~~~~~~~~f~~l~~~~~~~l~~ile~~~~~~~~s~~~K 135 (148)
||+|+.+| +.|+++||++|+||+|||+||||+|.+.|+||++++++|+|.++.+.++..++++|++.. ....+.++|
T Consensus 1 tp~Ci~~A--~~il~~mD~svdPCdDFY~yacG~W~~~~~ip~~~~~~~~f~~l~~~~~~~l~~iLe~~~-~~~~~~~~k 77 (670)
T 3dwb_A 1 SEACVSVT--SSILSSMDPTVDPCHDFFSYACGGWIKANPVPDGHSRWGTFSNLWEHNQAIIKHLLENST-ASVSEAERK 77 (670)
T ss_dssp CHHHHHHH--HHHHHHCCTTSCTTTCHHHHHHHHHHHHCCCCSSCSEEEHHHHHHHHHHHHHHHHHSCSS-CCSCHHHHH
T ss_pred ChHHHHHH--HHHHHcCCCCCCccccHHHHhhcCHHhcCCCCCcccchhhHHHHHHHHHHHHHHHHhccc-cCCChHHHH
Confidence 68999984 899999999999999999999999999999999999999999999999999999998764 345688999
Q ss_pred HHHHHHHHHccC
Q psy13033 136 AKNLYSSCINHG 147 (148)
Q Consensus 136 lk~fY~sCmd~~ 147 (148)
++.||++|||.+
T Consensus 78 ~~~~Y~sCmd~~ 89 (670)
T 3dwb_A 78 AQVYYRACMNET 89 (670)
T ss_dssp HHHHHHHHHCCH
T ss_pred HHHHHHHHhChH
Confidence 999999999963
No 2
>1r1h_A Neprilysin; enkephalinase, glycoprotein, metalloprotease, hydrolase; HET: NAG BIR; 1.95A {Homo sapiens} SCOP: d.92.1.4 PDB: 1dmt_A* 1r1i_A* 1r1j_A* 1y8j_A* 2qpj_A* 2yb9_A*
Probab=99.87 E-value=1.4e-22 Score=182.55 Aligned_cols=90 Identities=41% Similarity=0.813 Sum_probs=82.4
Q ss_pred CCCHHHHHHHHHhHHHHcCCCCCCCCCcHHHhhhcccccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHhccCCCCChHH
Q psy13033 54 QEDADTIRRNQAKLMKQYMDTSADPCVDFYQYACGNWGKLNPIPKDKAAFDTFEMLRESLDSVLRDLLEADISSDDCDSY 133 (148)
Q Consensus 54 ~~s~~Ci~~a~a~~l~s~md~svdPCdDFY~yvCG~W~k~~~ip~~~~~~~~f~~l~~~~~~~l~~ile~~~~~~~~s~~ 133 (148)
|.|++|+.+ |+.++++||++|+||+|||+||||+|.+.|+||++++++++|..+++.++..++++|++.. ...++.+
T Consensus 3 C~s~~C~~~--a~~~~~~md~svdPCdDFY~yaCG~W~~~~~ip~d~~~~~~f~~L~~~~~~~l~~iL~~~~-~~~~~~~ 79 (696)
T 1r1h_A 3 CKSSDCIKS--AARLIQNMDATTEPCTDFFKYACGGWLKRNVIPETSSRYGNFDILRDELEVVLKDVLQEPK-TEDIVAV 79 (696)
T ss_dssp CCCHHHHHH--HHHHHHHCCTTSCTTTCHHHHHHHHHHHHCCCCTTCSEEEHHHHHHHHHHHHHHHHHSSCC-TTCCHHH
T ss_pred CCChHHHHH--HHHHHhcCCCCCCcchhHHHHhhccHHhcCCCCcccccccHHHHHHHHHHHHHHHHHhccc-ccCCcHH
Confidence 558999987 4799999999999999999999999999999999999999999999999999999998754 3456789
Q ss_pred HHHHHHHHHHHcc
Q psy13033 134 VKAKNLYSSCINH 146 (148)
Q Consensus 134 ~Klk~fY~sCmd~ 146 (148)
+|++.||++||+.
T Consensus 80 ~k~~~~Y~sCmd~ 92 (696)
T 1r1h_A 80 QKAKALYRSCINE 92 (696)
T ss_dssp HHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhcc
Confidence 9999999999985
No 3
>3zuk_A Endopeptidase, peptidase family M13; hydrolase-inhibitor complex, pathogenicity, phagosome matura; HET: RDF 211 PGE PG4; 2.60A {Mycobacterium tuberculosis}
Probab=99.81 E-value=4e-21 Score=174.15 Aligned_cols=89 Identities=21% Similarity=0.306 Sum_probs=76.5
Q ss_pred HHHHHHHHhHH-HHcCCCCCCCCCcHHHhhhcccccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHhccCC--CCChHHH
Q psy13033 58 DTIRRNQAKLM-KQYMDTSADPCVDFYQYACGNWGKLNPIPKDKAAFDTFEMLRESLDSVLRDLLEADISS--DDCDSYV 134 (148)
Q Consensus 58 ~Ci~~a~a~~l-~s~md~svdPCdDFY~yvCG~W~k~~~ip~~~~~~~~f~~l~~~~~~~l~~ile~~~~~--~~~s~~~ 134 (148)
.-+++|++..| +++||++|+||+|||+||||+|++.|+||++++++|+|..|.++++..+++||++.... ...+.++
T Consensus 35 ~~~~~a~~~~~~~~~md~sv~PcdDFY~yacG~W~~~~~IP~d~~~~g~f~~L~~~~~~~l~~ile~~~~~~~~~~~~~~ 114 (699)
T 3zuk_A 35 FTMTLAIPSGIDLSHIDADARPQDDLFGHVNGRWLAEHEIPADRATDGAFRSLFDRAETQVRDLIIQASQAGAAVGTDAQ 114 (699)
T ss_dssp -----CCCCSCCCTTCCTTSCTTTCHHHHHHHHHHHHCCCCTTCSEEEHHHHHHHHHHHHHHHHHHHHHTTCCCTTSHHH
T ss_pred HHHHHHHhccCChhhcCCCCCccccHHHHhhhHHHHhCCCCcccccccHHHHHHHHHHHHHHHHHHhhhccccCCCcHHH
Confidence 34777766666 89999999999999999999999999999999999999999999999999999886532 3457899
Q ss_pred HHHHHHHHHHcc
Q psy13033 135 KAKNLYSSCINH 146 (148)
Q Consensus 135 Klk~fY~sCmd~ 146 (148)
|++.||++|||+
T Consensus 115 k~~~~Y~scmd~ 126 (699)
T 3zuk_A 115 RIGDLYASFLDE 126 (699)
T ss_dssp HHHHHHHHHHCH
T ss_pred HHHHHHHHHhhh
Confidence 999999999995
No 4
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=18.14 E-value=72 Score=23.21 Aligned_cols=61 Identities=15% Similarity=0.151 Sum_probs=36.8
Q ss_pred CCCCCCCcHHHhhhcccccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHccC
Q psy13033 74 TSADPCVDFYQYACGNWGKLNPIPKDKAAFDTFEMLRESLDSVLRDLLEADISSDDCDSYVKAKNLYSSCINHG 147 (148)
Q Consensus 74 ~svdPCdDFY~yvCG~W~k~~~ip~~~~~~~~f~~l~~~~~~~l~~ile~~~~~~~~s~~~Klk~fY~sCmd~~ 147 (148)
-+++|-.||=+-.-. + ...|.....+....|.+++.+.....-..+.+-|+.|-..|....
T Consensus 32 g~~nPv~DFk~lL~~------~-------~~~~~~A~~qM~~vI~~Ll~~s~~~~y~KA~ecL~~lR~~~i~~~ 92 (152)
T 1rw2_A 32 GSVNPAENFRVLVKQ------K-------KASFEEASNQLINHIEQFLDTNETPYFMKSIDCIRAFREEAIKFS 92 (152)
T ss_dssp SSSCTTHHHHHHHHS------S-------SSCHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHc------C-------chhHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcc
Confidence 357899999877742 0 123666777777888888775411111245556666777776543
No 5
>1wr6_A ADP-ribosylation factor binding protein GGA3; three-helix bundle, clathrin coat adaptor protein, protein transport/signaling protein complex; 2.60A {Homo sapiens} SCOP: a.7.8.1 PDB: 1yd8_G
Probab=16.88 E-value=1.5e+02 Score=20.30 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhccCCCC-ChHHHHHHHHHHHHHc
Q psy13033 112 SLDSVLRDLLEADISSDD-CDSYVKAKNLYSSCIN 145 (148)
Q Consensus 112 ~~~~~l~~ile~~~~~~~-~s~~~Klk~fY~sCmd 145 (148)
...+.|.+||.+..++.. ......+..+|.+|..
T Consensus 15 ~n~~LL~EML~~~~pg~~~~~d~ell~ELy~~ck~ 49 (111)
T 1wr6_A 15 NNVRLLSEMLLHYSQEDSSDGDRELMKELFDQCEN 49 (111)
T ss_dssp HHHHHHHHHTTTCCTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHH
Confidence 345677777776655433 2445788889999853
No 6
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=16.27 E-value=3e+02 Score=19.51 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhccCCCCC-h-HHHHHHHHHHHHHc
Q psy13033 113 LDSVLRDLLEADISSDDC-D-SYVKAKNLYSSCIN 145 (148)
Q Consensus 113 ~~~~l~~ile~~~~~~~~-s-~~~Klk~fY~sCmd 145 (148)
....+.+||.+..++... . ....+..+|.+|..
T Consensus 59 n~~LL~EML~~~~p~~~~~~~d~Ell~eL~~~ck~ 93 (140)
T 1o3x_A 59 NVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCER 93 (140)
T ss_dssp HHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHH
Confidence 345666777776554333 3 56899999999964
No 7
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=13.33 E-value=3.1e+02 Score=18.22 Aligned_cols=35 Identities=11% Similarity=0.178 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhccCCCC-ChHHHHHHHHHHHHHc
Q psy13033 111 ESLDSVLRDLLEADISSDD-CDSYVKAKNLYSSCIN 145 (148)
Q Consensus 111 ~~~~~~l~~ile~~~~~~~-~s~~~Klk~fY~sCmd 145 (148)
....+.+.+||.+..++.. ......+..+|.+|..
T Consensus 19 ~~n~~lL~EML~~~~p~~~~~~~~el~~eL~~~c~~ 54 (103)
T 1wrd_A 19 SGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRA 54 (103)
T ss_dssp HHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHH
Confidence 4455778888887765432 3455789999999964
No 8
>4b1v_M Phosphatase and actin regulator 1; structural protein, nucleotide-binding, transcription regula transcription, muscle protein, ATP-binding; HET: ATP LAB; 1.75A {Mus musculus}
Probab=13.33 E-value=71 Score=17.30 Aligned_cols=12 Identities=50% Similarity=0.639 Sum_probs=10.1
Q ss_pred hhHHHHHhhhcC
Q psy13033 2 QSMEKLVQRNVS 13 (148)
Q Consensus 2 ~~~~~~~~~~~~ 13 (148)
||-|.|+.|+|-
T Consensus 16 qsreelikrgvl 27 (32)
T 4b1v_M 16 QSREELIKRGVL 27 (32)
T ss_dssp CCHHHHHHTTSC
T ss_pred ccHHHHHHhhhh
Confidence 678999999884
No 9
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=11.10 E-value=4e+02 Score=19.83 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhccCCCC-Ch-HHHHHHHHHHHHHc
Q psy13033 112 SLDSVLRDLLEADISSDD-CD-SYVKAKNLYSSCIN 145 (148)
Q Consensus 112 ~~~~~l~~ile~~~~~~~-~s-~~~Klk~fY~sCmd 145 (148)
.....|.+||.+..++.. .. ....+..+|.+|..
T Consensus 83 ~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~ 118 (186)
T 1oxz_A 83 NNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCER 118 (186)
T ss_dssp HHHHHHHHHHHHTSSSCSCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCccCccccHHHHHHHHHHHHH
Confidence 344667778877655432 22 56799999999964
No 10
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=10.24 E-value=67 Score=22.24 Aligned_cols=59 Identities=14% Similarity=0.149 Sum_probs=31.4
Q ss_pred CCCCCCcHHHhhhcccccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcc
Q psy13033 75 SADPCVDFYQYACGNWGKLNPIPKDKAAFDTFEMLRESLDSVLRDLLEADISSDDCDSYVKAKNLYSSCINH 146 (148)
Q Consensus 75 svdPCdDFY~yvCG~W~k~~~ip~~~~~~~~f~~l~~~~~~~l~~ile~~~~~~~~s~~~Klk~fY~sCmd~ 146 (148)
+++|-.||=+-.-. + ...|.....+....|.+++.+.....-..+.+-++.|-..|...
T Consensus 2 ~~nPv~DFk~ll~~------~-------~~~~~~A~~qm~~vI~~Ll~~s~~~~y~ka~ecl~~~R~~~i~~ 60 (120)
T 1q2z_A 2 PVNPAENFRVLVKQ------K-------KASFEEASNQLINHIEQFLDTNETPYFMKSIDCIRAFREEAIKF 60 (120)
T ss_dssp CCCHHHHHHHHTSS------S-------CCTTTHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHc------C-------chhHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHhc
Confidence 46777777666632 0 01244555666677777776441111124455566666666554
Done!