RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13033
(148 letters)
>3dwb_A ECE-1, endothelin-converting enzyme 1; protein, disease mutation,
glycoprotein, hirschsprung diseas hydrolase, membrane,
metal-binding; HET: 5HD RDF; 2.38A {Homo sapiens}
Length = 670
Score = 101 bits (253), Expect = 6e-26
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 65 AKLMKQYMDTSADPCVDFYQYACGNWGKLNPIPKDKAAFDTFEMLRESLDSVLRDLLEAD 124
+ MD + DPC DF+ YACG W K NP+P + + TF L E ++++ LLE
Sbjct: 8 TSSILSSMDPTVDPCHDFFSYACGGWIKANPVPDGHSRWGTFSNLWEHNQAIIKHLLENS 67
Query: 125 ISSDDCDSYVKAKNLYSSCIN 145
+S ++ KA+ Y +C+N
Sbjct: 68 TASVS-EAERKAQVYYRACMN 87
>1r1h_A Neprilysin; enkephalinase, glycoprotein, metalloprotease,
hydrolase; HET: NAG BIR; 1.95A {Homo sapiens} SCOP:
d.92.1.4 PDB: 1dmt_A* 1r1i_A* 1r1j_A* 1y8j_A* 2qpj_A*
2yb9_A*
Length = 696
Score = 98.3 bits (245), Expect = 7e-25
Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 65 AKLMKQYMDTSADPCVDFYQYACGNWGKLNPIPKDKAAFDTFEMLRESLDSVLRDLLEAD 124
A + Q MD + +PC DF++YACG W K N IP+ + + F++LR+ L+ VL+D+L+
Sbjct: 12 AARLIQNMDATTEPCTDFFKYACGGWLKRNVIPETSSRYGNFDILRDELEVVLKDVLQEP 71
Query: 125 ISSDDCDSYVKAKNLYSSCIN 145
+ D KAK LY SCIN
Sbjct: 72 KTEDIVAV-QKAKALYRSCIN 91
>3zuk_A Endopeptidase, peptidase family M13; hydrolase-inhibitor complex,
pathogenicity, phagosome matura; HET: RDF 211 PGE PG4;
2.60A {Mycobacterium tuberculosis}
Length = 699
Score = 91.7 bits (228), Expect = 1e-22
Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 65 AKLMKQYMDTSADPCVDFYQYACGNWGKLNPIPKDKAAFDTFEMLRESLDSVLRDLLEAD 124
+ + ++D A P D + + G W + IP D+A F L + ++ +RDL+
Sbjct: 43 SGIDLSHIDADARPQDDLFGHVNGRWLAEHEIPADRATDGAFRSLFDRAETQVRDLIIQA 102
Query: 125 ISSDDCDSYV--KAKNLYSSCIN 145
+ + +LY+S ++
Sbjct: 103 SQAGAAVGTDAQRIGDLYASFLD 125
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.7 bits (81), Expect = 0.002
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 6/29 (20%)
Query: 52 EEQEDADTIRRNQAKLMKQYMDTSADPCV 80
E+Q +++ QA L K Y D SA P +
Sbjct: 18 EKQA----LKKLQASL-KLYADDSA-PAL 40
>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural
genomics, NPPSFA, national on protein structural and
functional analyses; 1.80A {Aquifex aeolicus}
Length = 139
Score = 26.5 bits (59), Expect = 2.4
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 90 WGKLNPIPKDKAAFDTFEMLRESL 113
+L IP DK FD +++ + L
Sbjct: 112 VYRLEEIPLDKLVFDHKKIILDFL 135
>2bhg_A Foot-and-mouth disease virus 3C protease; chymotrypsin-like
cysteine protease, capsid protein, core protein; 1.9A
{Foot-and-mouth disease virus} SCOP: b.47.1.4 PDB:
2j92_A 2wv4_A 2wv5_A
Length = 209
Score = 26.6 bits (58), Expect = 2.9
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 4 MEKLVQRNVSDNFVYLDTKNFSSINTDFLYDNF 36
++K+V N + LD K + ++
Sbjct: 9 LQKMVMGNTKPVELNLDGKTVAICCATGVFGTA 41
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.9 bits (59), Expect = 3.5
Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 13/107 (12%)
Query: 3 SMEKLVQRNVSDNFVYLDTKNFSSINTDFLYDNFNSDRENNVVKHPVFWEEQEDADTIR- 61
S+ +V N + ++ + I ++ F + + + +F E E + +
Sbjct: 1660 SILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF 1719
Query: 62 RNQAKLMKQYMDTS-ADPCVDFYQYAC----GNWGKLNPIPKDKAAF 103
R++ L+ T P + + A + G IP D A F
Sbjct: 1720 RSEKGLLSA---TQFTQPALTLMEKAAFEDLKSKG---LIPAD-ATF 1759
Score = 26.9 bits (59), Expect = 3.7
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 12/39 (30%)
Query: 33 YDNFN-SD-RENN----------VVKHPVFWEEQEDADT 59
YD F+ SD R + +++ PV WE
Sbjct: 460 YDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKA 498
>1zs8_A Histocompatibility 2, M region locus 10.5; major
histocompatibility complex, MHC, vomeronasal organ, VN
receptors, pheromone receptors, pepti immune system;
HET: NAG; 3.00A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Length = 274
Score = 26.5 bits (59), Expect = 3.7
Identities = 9/56 (16%), Positives = 17/56 (30%), Gaps = 14/56 (25%)
Query: 30 DFLYDNFNSDRENNVVKHPVFWEEQEDAD--------------TIRRNQAKLMKQY 71
Y F+S E ++ W +QE + RR ++ +
Sbjct: 29 SIQYQGFDSRSETAGMQPRAAWMKQEPPEYWKNETEHAMGASLLARRTLIYMVTEN 84
>1mhm_B Adometdc, samdc, S-adenosylmethionine decarboxylase; covalent
pyruvoyl group, lyase; 2.30A {Solanum tuberosum} SCOP:
d.156.1.1
Length = 72
Score = 24.7 bits (54), Expect = 4.9
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 5/29 (17%)
Query: 110 RESLDSVLRDLLEADI----SSDDCDSYV 134
+ LD +L E I S+D DSYV
Sbjct: 42 KAQLDEIL-GPAECTIVDNLSNDYVDSYV 69
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate
dependent decarboxylase, acid stress stringent response;
HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Length = 715
Score = 26.2 bits (57), Expect = 6.3
Identities = 14/121 (11%), Positives = 33/121 (27%), Gaps = 21/121 (17%)
Query: 14 DNFVYLDTKNFSSINTDFLYDNFNSDRENNVVKHPVFWEEQEDADTIRRNQAKLMKQYMD 73
+ + +T + ++ + L F A+ I + +Y++
Sbjct: 78 PLYAFANTYSTLDVSLNDLRLQ-----------ISFFEYALGAAEDIANKIKQTTDEYIN 126
Query: 74 TSADPCVDFYQYACGNWGKLNPIP------KDKAAFDTFEMLRESLDSVLRDLLEADISS 127
T P + + AF + D + +++DIS
Sbjct: 127 TILPPLTKALF----KYVREGKYTFCTPGHMGGTAFQKSPVGSLFYDFFGPNTMKSDISI 182
Query: 128 D 128
Sbjct: 183 S 183
>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2,
protein structure INI NEW YORK SGX research center for
structural genomics; 2.20A {Listeria innocua}
Length = 187
Score = 25.1 bits (55), Expect = 8.0
Identities = 5/33 (15%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 90 WGKLNPIPKDKAAFDTFEMLRESLDSVLRDLLE 122
+ + AFD +ML+++ + + +
Sbjct: 146 LFPMTEALELPLAFDHLDMLKKAFSA-ITEEFL 177
>1s7q_A H-2KB, H-2 class I histocompatibility antigen, K-B alpha chain;
LCMV, MHC class I, immune escape, immune system; 1.99A
{Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1s7r_A
1s7s_A 1s7t_A 1bii_A 3qul_A 1s7v_A 1s7w_A 1s7x_A 3quk_A
1s7u_A 1nez_A*
Length = 348
Score = 25.6 bits (56), Expect = 8.0
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 30 DFLYDNFNSDRENNVVKHPVFWEEQEDADTIRRN 63
D + F+SD EN + W EQE + R
Sbjct: 30 DTEFVRFDSDAENPRYEPRARWMEQEGPEYWERE 63
>1k5n_A Major histocompatibility complex molecule HLA-B*2; MHC(major
histocompatibility complex), HLA(human leukocyte A
immune system; 1.09A {Homo sapiens} SCOP: b.1.1.2
d.19.1.1 PDB: 1jgd_A 1of2_A 1uxw_A 1w0w_A 3b3i_A*
3bp7_A 3czf_A* 3hcv_A* 3d18_A* 2bss_A 2bsr_A 2a83_A
1jge_A 1hsa_A 1uxs_A 1w0v_A 1ogt_A 2bst_A 3b6s_A*
3bp4_A ...
Length = 276
Score = 25.3 bits (56), Expect = 9.5
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 30 DFLYDNFNSDRENNVVKHPVFWEEQEDAD 58
D L+ F+SD + + W EQE +
Sbjct: 30 DTLFVRFDSDAASPREEPRAPWIEQEGPE 58
>3nwm_A Peptide/beta-2microglobulin/MHC class I H-2KD CHI protein;
peptide-MHC complex, immunoglobulin fold system; 2.70A
{Synthetic}
Length = 443
Score = 25.5 bits (56), Expect = 9.5
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 30 DFLYDNFNSDRENNVVKHPVFWEEQEDADTIRRN 63
D + F+SD +N + W EQE +
Sbjct: 175 DTQFVRFDSDADNPRFEPRAPWMEQEGPEYWEEQ 208
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.394
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,178,824
Number of extensions: 113909
Number of successful extensions: 230
Number of sequences better than 10.0: 1
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 24
Length of query: 148
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 63
Effective length of database: 4,328,508
Effective search space: 272696004
Effective search space used: 272696004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.3 bits)