RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13033
         (148 letters)



>d1dmta_ d.92.1.4 (A:) Neutral endopeptidase (neprilysin) {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 696

 Score = 94.0 bits (232), Expect = 7e-24
 Identities = 35/82 (42%), Positives = 54/82 (65%), Gaps = 1/82 (1%)

Query: 64  QAKLMKQYMDTSADPCVDFYQYACGNWGKLNPIPKDKAAFDTFEMLRESLDSVLRDLLEA 123
            A  + Q MD + +PC DF++YACG W K N IP+  + +  F++LR+ L+ VL+D+L+ 
Sbjct: 11  SAARLIQNMDATTEPCTDFFKYACGGWLKRNVIPETSSRYGNFDILRDELEVVLKDVLQ- 69

Query: 124 DISSDDCDSYVKAKNLYSSCIN 145
           +  ++D  +  KAK LY SCIN
Sbjct: 70  EPKTEDIVAVQKAKALYRSCIN 91


>d1zs8a2 d.19.1.1 (A:1-180) Class I MHC, alpha-1 and alpha-2
          domains {Mouse (Mus musculus), H-2M10 [TaxId: 10090]}
          Length = 180

 Score = 25.7 bits (56), Expect = 1.7
 Identities = 8/56 (14%), Positives = 16/56 (28%)

Query: 30 DFLYDNFNSDRENNVVKHPVFWEEQEDADTIRRNQAKLMKQYMDTSADPCVDFYQY 85
             Y  F+S  E   ++    W +QE  +  +      M   +           + 
Sbjct: 29 SIQYQGFDSRSETAGMQPRAAWMKQEPPEYWKNETEHAMGASLLARRTLIYMVTEN 84


>d1mhca2 d.19.1.1 (A:1-181) Class I MHC, alpha-1 and alpha-2 domains
           {Mouse (Mus musculus), H-2M3 [TaxId: 10090]}
          Length = 181

 Score = 25.7 bits (56), Expect = 2.3
 Identities = 11/72 (15%), Positives = 24/72 (33%), Gaps = 14/72 (19%)

Query: 30  DFLYDNFNSDRENNVVKHPVFWEEQEDAD--------------TIRRNQAKLMKQYMDTS 75
           D  +   +S  E   ++    W E+E  +              + R N   L++ Y  + 
Sbjct: 30  DVQFQRCDSIEEIPRMEPRAPWMEKERPEYWKELKLKVKNIAQSARANLRTLLRYYNQSE 89

Query: 76  ADPCVDFYQYAC 87
               +  +  +C
Sbjct: 90  GGSHILQWMVSC 101


>d1neza2 d.19.1.1 (A:1-181) Class I MHC, alpha-1 and alpha-2
          domains {Mouse (Mus musculus), tla(c), H-2 class
          [TaxId: 10090]}
          Length = 181

 Score = 25.4 bits (55), Expect = 2.8
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 6/51 (11%)

Query: 30 DFLYDNFNSDRENNVVKHPVFWEEQEDADT------IRRNQAKLMKQYMDT 74
          D  +  F+S  E    K    W EQE  +       I  + A+  ++ + T
Sbjct: 30 DTQFARFDSAGETGTYKLSAPWVEQEGPEYWARETEIVTSNAQFFRENLQT 80


>d1h6ga1 a.24.9.1 (A:377-507) alpha-catenin {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 131

 Score = 24.0 bits (52), Expect = 5.7
 Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 97  PKDKAAFDTFEMLRESLDSVLRDLLEA--DISS 127
           P+ K A +  ++ +E  +  +R L +A  DI+S
Sbjct: 99  PQSKLAQENMDLFKEQWEKQVRVLTDAVDDITS 131


>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase
          {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
          4932]}
          Length = 477

 Score = 24.1 bits (52), Expect = 8.0
 Identities = 7/44 (15%), Positives = 16/44 (36%), Gaps = 1/44 (2%)

Query: 29 TDFLYDN-FNSDRENNVVKHPVFWEEQEDADTIRRNQAKLMKQY 71
          T  L D+   ++  + +    V W+    ++ +    A   K  
Sbjct: 3  TKILMDSTHFNEIRSIIRSRSVAWDALARSEELSEIDASTAKAL 46


>d1rlga_ d.79.3.1 (A:) Ribosomal protein L7ae {Archaeon
          Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 113

 Score = 23.6 bits (51), Expect = 8.4
 Identities = 7/29 (24%), Positives = 9/29 (31%)

Query: 59 TIRRNQAKLMKQYMDTSADPCVDFYQYAC 87
           + R  AKL+    D      V      C
Sbjct: 32 AVERGLAKLVYIAEDVDPPEIVAHLPLLC 60


>d1st6a6 a.24.9.1 (A:647-718) Vinculin {Chicken (Gallus gallus)
           [TaxId: 9031]}
          Length = 72

 Score = 22.8 bits (49), Expect = 10.0
 Identities = 5/27 (18%), Positives = 13/27 (48%)

Query: 97  PKDKAAFDTFEMLRESLDSVLRDLLEA 123
           P ++AA++ FE ++      +  +   
Sbjct: 40  PGNQAAYEHFETMKNQWIDNVEKMTGL 66


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.132    0.394 

Gapped
Lambda     K      H
   0.267   0.0591    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 542,298
Number of extensions: 23284
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 16
Length of query: 148
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 71
Effective length of database: 1,350,386
Effective search space: 95877406
Effective search space used: 95877406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.0 bits)