Query psy13035
Match_columns 293
No_of_seqs 148 out of 1102
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 17:47:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13035.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13035hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1600|consensus 100.0 6.1E-80 1.3E-84 576.3 10.4 231 45-277 34-279 (321)
2 PLN02220 delta-9 acyl-lipid de 100.0 2.5E-67 5.4E-72 494.9 13.4 226 44-279 26-262 (299)
3 COG1398 OLE1 Fatty-acid desatu 100.0 2.7E-60 5.8E-65 436.7 6.5 222 51-279 20-255 (289)
4 cd03505 Delta9-FADS-like The D 100.0 1.7E-53 3.7E-58 374.9 7.0 134 84-280 16-156 (178)
5 PF00487 FA_desaturase: Fatty 99.0 4.6E-10 1E-14 98.1 7.5 63 85-147 17-80 (257)
6 cd01060 Membrane-FADS-like The 98.8 3.1E-08 6.6E-13 79.7 7.7 59 85-145 13-73 (122)
7 cd03513 CrtW_beta-carotene-ket 97.6 0.00049 1.1E-08 63.2 10.3 48 96-143 54-103 (225)
8 cd03506 Delta6-FADS-like The D 97.5 7.7E-05 1.7E-09 66.5 3.0 55 95-149 21-76 (204)
9 cd03511 Rhizopine-oxygenase-li 97.1 0.0027 5.9E-08 59.3 9.2 49 96-144 66-115 (285)
10 cd03514 CrtR_beta-carotene-hyd 96.1 0.013 2.9E-07 52.7 6.4 50 96-145 46-96 (207)
11 cd03510 Rhizobitoxine-FADS-lik 95.7 0.034 7.4E-07 48.8 7.0 51 95-145 42-93 (175)
12 cd03509 DesA_FADS-like Fatty a 95.5 0.073 1.6E-06 50.5 8.8 49 96-145 49-100 (288)
13 cd03512 Alkane-hydroxylase Alk 95.5 0.07 1.5E-06 51.2 8.6 54 94-152 93-147 (314)
14 COG3239 DesA Fatty acid desatu 95.3 0.062 1.4E-06 52.1 7.7 49 95-143 85-133 (343)
15 PLN03199 delta6-acyl-lipid des 95.2 0.064 1.4E-06 54.4 7.9 43 96-138 183-226 (485)
16 cd03507 Delta12-FADS-like The 95.1 0.11 2.5E-06 47.1 8.4 58 86-144 46-104 (222)
17 PLN02505 omega-6 fatty acid de 94.8 0.11 2.3E-06 51.5 7.8 47 96-143 108-156 (381)
18 PLN03198 delta6-acyl-lipid des 94.8 0.15 3.3E-06 52.4 9.1 46 95-140 257-303 (526)
19 cd03508 Delta4-sphingolipid-FA 94.7 0.11 2.4E-06 49.4 7.6 49 96-145 67-118 (289)
20 PLN02579 sphingolipid delta-4 94.3 0.15 3.2E-06 49.4 7.5 57 88-145 89-147 (323)
21 PLN02598 omega-6 fatty acid de 92.7 0.35 7.5E-06 48.5 7.2 57 85-142 137-194 (421)
22 PLN02498 omega-3 fatty acid de 92.7 0.35 7.5E-06 48.9 7.2 48 96-143 172-220 (450)
23 KOG4232|consensus 85.3 10 0.00022 38.2 11.1 55 92-146 162-217 (430)
24 cd00547 QFR_TypeD_subunitD Qui 57.1 18 0.00039 30.3 4.2 45 85-138 38-85 (115)
25 PRK05470 fumarate reductase su 54.7 20 0.00043 30.2 4.0 44 85-137 41-88 (118)
26 PLN02601 beta-carotene hydroxy 39.8 27 0.00057 33.6 2.9 38 84-134 214-259 (303)
27 COG3080 FrdD Fumarate reductas 38.3 11 0.00024 31.3 0.1 15 124-138 75-89 (118)
28 PF04116 FA_hydroxylase: Fatty 37.1 19 0.0004 28.0 1.3 14 121-135 22-35 (114)
29 PLN02601 beta-carotene hydroxy 36.9 30 0.00064 33.2 2.7 13 87-99 150-162 (303)
30 PF10520 Kua-UEV1_localn: Kua- 36.6 74 0.0016 28.5 5.1 42 85-135 95-136 (178)
31 PF02313 Fumarate_red_D: Fumar 28.7 1.5E+02 0.0032 25.0 5.3 39 90-137 50-88 (118)
No 1
>KOG1600|consensus
Probab=100.00 E-value=6.1e-80 Score=576.25 Aligned_cols=231 Identities=50% Similarity=0.908 Sum_probs=221.5
Q ss_pred CCcceeehhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH--------hheehhhhhhhhcccccCChHHHHHHHHHHHH
Q psy13035 45 YRWSIVWRNVLAFAYLHLGASYAVYLMFFNQVQLKTILYR--------EGVTAGAHRLWAHRTYSAKWPLRLILMLANSM 116 (293)
Q Consensus 45 ~~~~i~W~~v~~~~~~hl~al~g~~~~~~~~~~~~tl~~~--------lGiT~GyHRl~sHRSfka~~~lr~~L~~~g~l 116 (293)
.+++++|.+++.++.+|+++++|++...+ .++|.|++++ ||||+||||+|||||||+++|||++||+|+++
T Consensus 34 ~~~~~~w~nv~~~~~l~~~a~ygl~~~~~-~~~w~t~~~~~~l~~v~glgITag~HRlwsHRSyKa~kpLr~fla~~~~~ 112 (321)
T KOG1600|consen 34 WKRELVWRNVVLFSALHIVALYGLLAPPF-SAKWETLLFAFFLYAVGGLGITAGYHRLWSHRSYKAPKPLRYFLAYCNTL 112 (321)
T ss_pred hhcchhhhhhHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHhhceeeeehhhhcccccccCCccHHHHHHHHHHH
Confidence 78999999999999999999999998755 6777776654 99999999999999999999999999999999
Q ss_pred hcccchhhhhhhhhhcccCCCCCCCCCccccCchhhhhhhhhhccChhHhhhcCcCCCCcccCCceEEeehhhhhHHHHH
Q psy13035 117 AFQNHLYEWVRDHRVHHKFTDTDADPHNSRRGFFFSHMGWLMVRKHPDVKRRGATVDLSDLEKDWVVMFQKKYYLILMPI 196 (293)
Q Consensus 117 a~Qgs~~~Wv~~HR~HH~~sDt~~DPHsp~rGf~~sH~GWll~~~~p~~~~~~~~~d~~DL~~Dp~~~~q~r~y~~~~~~ 196 (293)
|+||+|++||++||.||||||||+|||||+||||||||||++.++||+++++++++|++||++||++|||+|+|.+++++
T Consensus 113 A~Qg~~~~WvrdHR~HHk~tdTD~DPhn~~rGF~FsHvgWl~~~k~p~~k~~G~~~dvsDL~~dp~v~Fq~k~y~~l~~~ 192 (321)
T KOG1600|consen 113 AFQGDIIDWVRDHRVHHKFTDTDADPHNPRRGFWFSHVGWLLDKKHPQVKECGGRLDVSDLEADPVVRFQRKTYLLLMLF 192 (321)
T ss_pred hccCChhHHHhhhhhhccccccCCCCCCcccchhhhhhhhHhccCChHHHhhcCcCChhHhhhCceeeehhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccchhhhhchhhhHHHhhhhhhheeeeecceeecccccccCCCcCCCCCCccchhhHHHhhhccc-------c
Q psy13035 197 CCFLIPPLIPWYFWSEKWTNAWYVCALLRYTVSLHGTWLVNSAAHIWGMRKFGQTMQTLSQSNTLELELSRQ-------I 269 (293)
Q Consensus 197 ~~~~lP~~v~~~~wg~~~~~~~~~~~~~R~~l~~h~tw~VNS~aH~~G~Rpy~~~d~srnn~~~~~lt~GE~-------~ 269 (293)
++|+||+++++++||+++..+++.+ ++|.++++|+||||||+||+||.||||++++||||++++++||||| |
T Consensus 193 ~~f~lp~~~p~~~~~~~~~~~~~~~-~~r~~~~lh~TwlVNSaaH~~G~rp~d~~~~s~nn~~~s~~t~GEgwHNyHH~F 271 (321)
T KOG1600|consen 193 FCFLLPTLGPMYFWGEGMGLAFYVG-LFRYCIVLHATWLVNSAAHIWGSRPYDTNDTSRNNWWVSILTFGEGWHNYHHAF 271 (321)
T ss_pred HHHHHHHhCcceeeeecchhhhhHH-HHHHHHHHhhHHhhhhHHHHeecccCCCCCCcccceEEEEEEeccccccccccC
Confidence 9999999999999999998888888 9999999999999999999999999999999999999999999999 8
Q ss_pred ccccCCcc
Q psy13035 270 SQELGNVV 277 (293)
Q Consensus 270 ~~~~~n~~ 277 (293)
|.|||++-
T Consensus 272 p~dyr~ge 279 (321)
T KOG1600|consen 272 PWDYRHGE 279 (321)
T ss_pred chhhHhhh
Confidence 88888863
No 2
>PLN02220 delta-9 acyl-lipid desaturase
Probab=100.00 E-value=2.5e-67 Score=494.85 Aligned_cols=226 Identities=23% Similarity=0.344 Sum_probs=192.2
Q ss_pred CCCcceeehhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH---H-hheehhhhhhhhcccccCChHHHHHHHHHHHHhcc
Q psy13035 44 PYRWSIVWRNVLAFAYLHLGASYAVYLMFFNQVQLKTILY---R-EGVTAGAHRLWAHRTYSAKWPLRLILMLANSMAFQ 119 (293)
Q Consensus 44 ~~~~~i~W~~v~~~~~~hl~al~g~~~~~~~~~~~~tl~~---~-lGiT~GyHRl~sHRSfka~~~lr~~L~~~g~la~Q 119 (293)
.+-++++|..++.++++|++|+++++. ++|.+....+++ + +|||+|||||||||||||++++|++|++||++|+|
T Consensus 26 ~~~~~~~~~~~~~~~~~h~~~l~~~~~-~~w~~~~~~~~~~~it~lGiT~GyHRl~sHrsfka~~~l~~~la~~g~~a~Q 104 (299)
T PLN02220 26 RKWTRLDVVRASAVGTVHFLCLLAPFN-YKWEALRFGLILYIVTGLSITFSYHRNLAHRSFKLPKWLEYPFAYSALFALQ 104 (299)
T ss_pred hccceehhHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHHhC
Confidence 334568899999999999999988763 443333222222 1 99999999999999999999999999999999999
Q ss_pred cchhhhhhhhhhcccCCCCCCCCCccccCchhhhhhhhhhccChhHhhhcCcCCCCcccCCceEEeehhhhhHHHHHHHH
Q psy13035 120 NHLYEWVRDHRVHHKFTDTDADPHNSRRGFFFSHMGWLMVRKHPDVKRRGATVDLSDLEKDWVVMFQKKYYLILMPICCF 199 (293)
Q Consensus 120 gs~~~Wv~~HR~HH~~sDt~~DPHsp~rGf~~sH~GWll~~~~p~~~~~~~~~d~~DL~~Dp~~~~q~r~y~~~~~~~~~ 199 (293)
|||++||++||+||+|||||+|||||+||||||||||++.+++++ .+++++.|++||++||+++||+|+|...++.+++
T Consensus 105 gs~~~Wv~~HR~HH~~sDt~~DPHsp~~Gfw~sH~gWl~~~~~~~-~~~~~~~~~~Dl~~d~~~~~~~~~~~~~~l~~~~ 183 (299)
T PLN02220 105 GDPIDWVSTHRFHHQFTDSDRDPHSPIEGFWFSHVLWIFDTSYIR-EKCGGRDNVMDLKQQWFYRFLRKTIGLHILMFWT 183 (299)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCccccccCcHHHHhHhhcCcchhh-hhcccccchHHHHhCcchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999876543 3445667899999999999999998765533332
Q ss_pred HhccccchhhhhchhhhHHHhhhhhhheeeeecceeecccccccCCCcCCCCCCccchhhHHHhhhccc-------cccc
Q psy13035 200 LIPPLIPWYFWSEKWTNAWYVCALLRYTVSLHGTWLVNSAAHIWGMRKFGQTMQTLSQSNTLELELSRQ-------ISQE 272 (293)
Q Consensus 200 ~lP~~v~~~~wg~~~~~~~~~~~~~R~~l~~h~tw~VNS~aH~~G~Rpy~~~d~srnn~~~~~lt~GE~-------~~~~ 272 (293)
..+++|+. ..++|++++|+++++|+||+|||+||+||+|||+++|+||||++++++|+||| ||.+
T Consensus 184 ------~~~~~gg~--~~~~wg~~~r~~~~~h~tw~VNS~~H~~G~rpy~~~d~srN~~~lallt~GEgwHNnHHafP~s 255 (299)
T PLN02220 184 ------LLYLWGGL--PYLTWGVGVGGAIGYHVTWLINSACHIWGSRTWKTKDTSRNVWWLSLFTMGESWHNNHHAFESS 255 (299)
T ss_pred ------HHHHHhHH--HHHHHHHHHHHHHHHhhhhccchhhhcccCCCCCCCCCcchhHHHHHHhccccccccccCCccc
Confidence 23456653 34678899999999999999999999999999999999999999999999998 8999
Q ss_pred cCCcccc
Q psy13035 273 LGNVVCL 279 (293)
Q Consensus 273 ~~n~~~~ 279 (293)
++||+.|
T Consensus 256 ar~G~~w 262 (299)
T PLN02220 256 ARQGLEW 262 (299)
T ss_pred hhhCCcC
Confidence 9988655
No 3
>COG1398 OLE1 Fatty-acid desaturase [Lipid metabolism]
Probab=100.00 E-value=2.7e-60 Score=436.70 Aligned_cols=222 Identities=29% Similarity=0.448 Sum_probs=189.5
Q ss_pred ehhHHHHHHHHHHHHHHHHHHhh-HHH-HHHHHHHH----hheehhhhhhhhcccccCChHHHHHHHHHHHHhcccchhh
Q psy13035 51 WRNVLAFAYLHLGASYAVYLMFF-NQV-QLKTILYR----EGVTAGAHRLWAHRTYSAKWPLRLILMLANSMAFQNHLYE 124 (293)
Q Consensus 51 W~~v~~~~~~hl~al~g~~~~~~-~~~-~~~tl~~~----lGiT~GyHRl~sHRSfka~~~lr~~L~~~g~la~Qgs~~~ 124 (293)
|.++.+++.++++++++++.-+. +.+ ...+++.. +|||+||||+|||||||++|++|++|+++|++++||++++
T Consensus 20 ~~~v~~f~~~~i~~~l~~~~~~~~~~~~~i~~l~~y~~~~igIt~G~HRl~sHRa~~~~k~Le~~la~~g~l~~~G~~~~ 99 (289)
T COG1398 20 WNNVLFFIGPLIVAYLAFYPDFFSWLAELIFTLAYYLIGGIGITLGLHRLWSHRAFKAHKWLEYVLAFWGALTTQGPAIE 99 (289)
T ss_pred HHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhccceeeeehhhhhhhhhcccchHHHHHHHHHHHhhcCCCcee
Confidence 89999999999999987654322 111 12222221 9999999999999999999999999999999999999999
Q ss_pred hhhhhhhcccCCCCCCCCC-ccccCchhhhhhhhhhccChhHhhhcCcCCCCcccCCceEEeehhhhhHHHHHHHHHhcc
Q psy13035 125 WVRDHRVHHKFTDTDADPH-NSRRGFFFSHMGWLMVRKHPDVKRRGATVDLSDLEKDWVVMFQKKYYLILMPICCFLIPP 203 (293)
Q Consensus 125 Wv~~HR~HH~~sDt~~DPH-sp~rGf~~sH~GWll~~~~p~~~~~~~~~d~~DL~~Dp~~~~q~r~y~~~~~~~~~~lP~ 203 (293)
|+++||+||+|||||+||| +.+||||||||||++..+. + +..+.+..|+.+|...+||+|++...++++.+++|.
T Consensus 100 W~~~HR~HHr~tDTd~DPh~~~~kGfw~shigWm~~~~~-~---~~~r~~~~~~~kd~~~~~~~r~~~~~~~l~~i~~~l 175 (289)
T COG1398 100 WVGIHRKHHRKTDTDQDPHYDSFKGFWWSHIGWMLLYSA-E---AKDRETIQKLGKDIPLDWQHRNLYLIALLMQIVLPL 175 (289)
T ss_pred HHHHHHHhhcccCCCCCCCccccccchhhhcceeeecch-h---hcChhHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999995 5579999999999998654 2 222345678999999999999999999999999994
Q ss_pred ccchhhhhchhhhHHHhhhhhhheeeeecceeecccccccCCCcCCCCCCccchhhHHHhhhccc-------cccccCCc
Q psy13035 204 LIPWYFWSEKWTNAWYVCALLRYTVSLHGTWLVNSAAHIWGMRKFGQTMQTLSQSNTLELELSRQ-------ISQELGNV 276 (293)
Q Consensus 204 ~v~~~~wg~~~~~~~~~~~~~R~~l~~h~tw~VNS~aH~~G~Rpy~~~d~srnn~~~~~lt~GE~-------~~~~~~n~ 276 (293)
+..+++|+.. +++|+++.|+++++|+||||||+||.+||||||.+|+|||+++++++|+||+ ||.++||+
T Consensus 176 -~~~~~~gg~~--gl~~~gv~r~~~~~hat~~VNsl~H~~Gyr~fd~~d~arN~ww~al~t~GEgwHNnHHafp~~ar~g 252 (289)
T COG1398 176 -FIGYALGGWL--GLIWGGVQRLVLVQHATWCVNSLGHYIGYRPFDCRDTARNCWWVALVTFGEGWHNNHHAFPNSARNG 252 (289)
T ss_pred -HHHHHhcchh--HHHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCccceeEEEEeecccccccccccCcchhhcC
Confidence 4556777643 3889999999999999999999999999999999999999999999999997 77777777
Q ss_pred ccc
Q psy13035 277 VCL 279 (293)
Q Consensus 277 ~~~ 279 (293)
+-|
T Consensus 253 ~kW 255 (289)
T COG1398 253 LKW 255 (289)
T ss_pred cee
Confidence 654
No 4
>cd03505 Delta9-FADS-like The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide range of bacteria. These enzymes play essential roles in fatty acid metabolism and the regulation of cell membrane fluidity. Acyl-CoA desaturases are the enzymes involved in the CoA-bound desaturation of fatty acids. Mammalian stearoyl-CoA delta-9 desaturase is a key enzyme in the biosynthesis of monounsaturated fatty acids, and in yeast, the delta-9 acyl-CoA desaturase (OLE1) reaction accounts for all de nova unsaturated fatty acid production in Saccharomyces cerevisiae. These non-heme, iron-containing, ER membrane-bound enzymes are part of a three-component enzyme system involving cytochrome b5, cytochrome b5 reductase, and the delta-9 fatty acid desaturase. This complex catalyzes the NADH- and oxygen-dependent i
Probab=100.00 E-value=1.7e-53 Score=374.93 Aligned_cols=134 Identities=44% Similarity=0.800 Sum_probs=129.8
Q ss_pred HhheehhhhhhhhcccccCChHHHHHHHHHHHHhcccchhhhhhhhhhcccCCCCCCCCCccccCchhhhhhhhhhccCh
Q psy13035 84 REGVTAGAHRLWAHRTYSAKWPLRLILMLANSMAFQNHLYEWVRDHRVHHKFTDTDADPHNSRRGFFFSHMGWLMVRKHP 163 (293)
Q Consensus 84 ~lGiT~GyHRl~sHRSfka~~~lr~~L~~~g~la~Qgs~~~Wv~~HR~HH~~sDt~~DPHsp~rGf~~sH~GWll~~~~p 163 (293)
++|||+||||||||||||+++++|++|+++|++|+||||++|+++||+||+|||||+|||||+|||||+||||+
T Consensus 16 ~lgit~G~HRl~aHrsfk~~~~l~~~l~~~g~~a~qgs~~~W~~~HR~HH~~sDt~~DPhs~~~gf~~~h~gW~------ 89 (178)
T cd03505 16 GLGITAGYHRLWAHRSFKAPKPLRIFLAILGSLAGQGSPLWWVADHRLHHRYSDTDGDPHSPKRGFWFSHVGWL------ 89 (178)
T ss_pred HHHHHHHHHHHHhhccCcCcHHHHHHHHHHHHHHcCcCHHHHHHHHHHhhcccCCCCCCCCcccCcHHHHHhhH------
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhcCcCCCCcccCCceEEeehhhhhHHHHHHHHHhccccchhhhhchhhhHHHhhhhhhheeeeecceeeccccccc
Q psy13035 164 DVKRRGATVDLSDLEKDWVVMFQKKYYLILMPICCFLIPPLIPWYFWSEKWTNAWYVCALLRYTVSLHGTWLVNSAAHIW 243 (293)
Q Consensus 164 ~~~~~~~~~d~~DL~~Dp~~~~q~r~y~~~~~~~~~~lP~~v~~~~wg~~~~~~~~~~~~~R~~l~~h~tw~VNS~aH~~ 243 (293)
++++|+++++|+||+|||+||++
T Consensus 90 ---------------------------------------------------------~~~~r~~~~~h~t~~VNs~~H~~ 112 (178)
T cd03505 90 ---------------------------------------------------------GGLLRIVLVLHATWLVNSLAHMW 112 (178)
T ss_pred ---------------------------------------------------------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 46889999999999999999999
Q ss_pred CCCcCCCCCCccchhhHHHhhhccc-------cccccCCccccc
Q psy13035 244 GMRKFGQTMQTLSQSNTLELELSRQ-------ISQELGNVVCLT 280 (293)
Q Consensus 244 G~Rpy~~~d~srnn~~~~~lt~GE~-------~~~~~~n~~~~~ 280 (293)
|+|||+++|+||||++++++|+||+ ||+|++|++.+-
T Consensus 113 G~r~~~~~~~s~n~~~~~llt~GEg~HNnHHafP~~ar~g~~~~ 156 (178)
T cd03505 113 GYRPYDTRDTSRNNWWVALLTFGEGWHNNHHAFPGDARNGLKWY 156 (178)
T ss_pred CCCCCCCCCCchhhHHHHHHHccccccccccCCcchhhhCCcCC
Confidence 9999999999999999999999999 999999998764
No 5
>PF00487 FA_desaturase: Fatty acid desaturase This entry is only a subset of the Pfam family.; InterPro: IPR005804 Fatty acid desaturases are enzymes that catalyse the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: Bacterial fatty acid desaturases. Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 1. ; GO: 0006629 lipid metabolic process
Probab=99.05 E-value=4.6e-10 Score=98.10 Aligned_cols=63 Identities=19% Similarity=0.211 Sum_probs=57.5
Q ss_pred hheehhhhhhhhcccccCChHHHHHHHHHHHHhcccchhhhhhhhhhcccCCCCCC-CCCcccc
Q psy13035 85 EGVTAGAHRLWAHRTYSAKWPLRLILMLANSMAFQNHLYEWVRDHRVHHKFTDTDA-DPHNSRR 147 (293)
Q Consensus 85 lGiT~GyHRl~sHRSfka~~~lr~~L~~~g~la~Qgs~~~Wv~~HR~HH~~sDt~~-DPHsp~r 147 (293)
++.+.+.++-.+|++|..++++..++..+.++..++++..|...|++||+++++++ ||.+...
T Consensus 17 ~~~~~~~~H~~~H~~~~~~~~~n~~l~~~~~~~~~~~~~~wr~~H~~HH~~~~~~~~Dpd~~~~ 80 (257)
T PF00487_consen 17 FARLFGLAHDAGHGAFFRSRWLNDLLGRLLGLPIGGPYSSWRISHNRHHHYTNNPDRDPDSWTR 80 (257)
T ss_pred HHHHHHHHHHHhccCCcccChHHHHHHHHHHHHhcCCHhHhheeeeccccccCCccccCccchh
Confidence 66778899999999999999999999888888888999999999999999999887 9999865
No 6
>cd01060 Membrane-FADS-like The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane hydroxylases, beta carotene ketolases (CrtW-like), hydroxylases (CrtR-like), and other related proteins. They are present in all groups of organisms with the exception of archaea. Membrane FADSs are non-heme, iron-containing, oxygen-dependent enzymes involved in regioselective introduction of double bonds in fatty acyl aliphatic chains. They play an important role in the maintenance of the proper structure and functioning of biological membranes. Alkane hydroxylases are bacterial, integral-membrane di-iron enzymes that share a requirement for iron and oxygen for activity similar to that of membrane FADSs, and are involved in the initial oxidation of inactivated alkanes. Beta-carotene ketolase and beta-carotene hydroxylase are carotenoid biosynthetic enzymes for astaxanthin and zeaxanthin, respectively. This superfamily domain has extensive hydrophobic regions that would
Probab=98.75 E-value=3.1e-08 Score=79.68 Aligned_cols=59 Identities=37% Similarity=0.643 Sum_probs=50.8
Q ss_pred hheehhhhhhhhccccc-CChHHHHHHHHHHHHhcccchhhhhhhhhhcccCCCCC-CCCCcc
Q psy13035 85 EGVTAGAHRLWAHRTYS-AKWPLRLILMLANSMAFQNHLYEWVRDHRVHHKFTDTD-ADPHNS 145 (293)
Q Consensus 85 lGiT~GyHRl~sHRSfk-a~~~lr~~L~~~g~la~Qgs~~~Wv~~HR~HH~~sDt~-~DPHsp 145 (293)
++.....|+. +|++|. .+++-+++..+++. ....++..|...|.+||++++++ +||.++
T Consensus 13 ~~~~~~~H~~-~H~~~~~~~~~n~~~~~~~~~-~~~~~~~~~~~~H~~HH~~~~~~~~D~~~~ 73 (122)
T cd01060 13 LGLTVLAHEL-GHRSFFRSRWLNRLLGALLGL-ALGGSYGWWRRSHRRHHRYTNTPGKDPDSA 73 (122)
T ss_pred HHHHHHHHHH-hhhhhhccccHHHHHHHHHHH-HHcCCHHHHHHHHHHHhcCcCCCCCCCccc
Confidence 4778889999 999999 45556666666666 78889999999999999999997 999999
No 7
>cd03513 CrtW_beta-carotene-ketolase Beta-carotene ketolase/oxygenase (CrtW, also known as CrtO), the carotenoid astaxanthin biosynthetic enzyme, initially catalyzes the addition of two keto groups to carbons C4 and C4' of beta-carotene. Carotenoids are important natural pigments produced by many microorganisms and plants. Astaxanthin is reported to be an antioxidant, an anti-cancer agent, and an immune system stimulant. A number of bacteria and green algae can convert beta-carotene into astaxanthin by using several ketocarotenoids as intermediates and CrtW and a beta-carotene hydroxylase (CrtZ). CrtW initially converts beta-carotene to canthaxanthin via echinenone, and CrtZ initially mediates the conversion of beta-carotene to zeaxanthin via beta-cryptoxanthin. After a few more intermediates are formed, CrtW and CrtZ act in combination to produce astaxanthin. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. Th
Probab=97.61 E-value=0.00049 Score=63.17 Aligned_cols=48 Identities=21% Similarity=0.260 Sum_probs=33.4
Q ss_pred hccccc-CChHHHHHHH-HHHHHhcccchhhhhhhhhhcccCCCCCCCCC
Q psy13035 96 AHRTYS-AKWPLRLILM-LANSMAFQNHLYEWVRDHRVHHKFTDTDADPH 143 (293)
Q Consensus 96 sHRSfk-a~~~lr~~L~-~~g~la~Qgs~~~Wv~~HR~HH~~sDt~~DPH 143 (293)
+|+++- -++++..++. +++.+-.-.+-..|-+.|.+||+++.+++||=
T Consensus 54 ~Hg~~~~~~~~~N~~iG~~~~~l~~g~~~~~~~~~H~~HH~~~~~~~DpD 103 (225)
T cd03513 54 MHGSLAPGNPRLNRAIGRLCLFLYAGFSYDRLLRKHHLHHRHPGTAKDPD 103 (225)
T ss_pred hhhccccCCchHHHHHHHHHHHHhhcCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 577764 4555555555 33334333478889999999999999888875
No 8
>cd03506 Delta6-FADS-like The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria. These desaturases are required for the synthesis of highly unsaturated fatty acids (HUFAs), which are mainly esterified into phospholipids and contribute to maintaining membrane fluidity. While HUFAs may be required for cold tolerance in bacteria, plants and fish, the primary role of HUFAs in mammals is cell signaling. These enzymes are described as front-end desaturases because they introduce a double bond between the pre-exiting double bond and the carboxyl (front) end of the fatty acid. Various substrates are involved, with both acyl-coenzyme A (CoA) and acyl-lipid desaturases present in this CD. Acyl-lipid desaturases are localized in the membranes of cyanobacterial thylakoid, plant endoplasmic reticulum (ER), and plastid; an
Probab=97.47 E-value=7.7e-05 Score=66.47 Aligned_cols=55 Identities=22% Similarity=0.239 Sum_probs=45.8
Q ss_pred hhcccccCChHHHHHHHHHHHHhcccchhhhhhhhhhcccCCCC-CCCCCccccCc
Q psy13035 95 WAHRTYSAKWPLRLILMLANSMAFQNHLYEWVRDHRVHHKFTDT-DADPHNSRRGF 149 (293)
Q Consensus 95 ~sHRSfka~~~lr~~L~~~g~la~Qgs~~~Wv~~HR~HH~~sDt-~~DPHsp~rGf 149 (293)
.+|+++..++++..++..+......+|..+|-..|..||+++++ ++||--.....
T Consensus 21 ~~H~~~~~~~~~n~~~g~~~~~~~g~s~~~w~~~H~~HH~~tn~~~~Dpd~~~~~~ 76 (204)
T cd03506 21 AGHGQVFKNRWLNKLLGLTVGNLLGASAGWWKNKHNVHHAYTNILGHDPDIDTLPL 76 (204)
T ss_pred ccCccccCCchHHHHHHHHHHhccCCCHHHHHHHHhhhcCcCCCCCCCCCCCcCce
Confidence 46999988899999888777776778999999999999999985 58998765443
No 9
>cd03511 Rhizopine-oxygenase-like This CD includes the putative hydrocarbon oxygenase, MocD, a bacterial rhizopine (3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and other related proteins. It has been proposed that MocD, MocE (Rieske-like ferredoxin), and MocF (ferredoxin reductase) under the regulation of MocR, act in concert to form a ferredoxin oxygenase system that demethylates 3-O-MSI to form scyllo-inosamine. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA d
Probab=97.11 E-value=0.0027 Score=59.30 Aligned_cols=49 Identities=20% Similarity=0.098 Sum_probs=41.0
Q ss_pred hcccccCChHHHHHHHHHHHHhcccchhhhhhhhhhcccCC-CCCCCCCc
Q psy13035 96 AHRTYSAKWPLRLILMLANSMAFQNHLYEWVRDHRVHHKFT-DTDADPHN 144 (293)
Q Consensus 96 sHRSfka~~~lr~~L~~~g~la~Qgs~~~Wv~~HR~HH~~s-Dt~~DPHs 144 (293)
+|+++.-++++..++..+.++....+...|...|..||+++ |+++||-.
T Consensus 66 ~H~~~~~~~~~N~~~g~l~~~~~~~~~~~~~~~H~~HH~~~~~~~~Dpd~ 115 (285)
T cd03511 66 VHGTAFATRWLNDAVGQIAGLMILLPPDFFRWSHARHHRYTQIPGRDPEL 115 (285)
T ss_pred hcccccCCchHHHHHHHHHHHHhcCChHHHHHHHHHHhcCcCCCCCCCCC
Confidence 79999889999988877666666678889999999999999 46788854
No 10
>cd03514 CrtR_beta-carotene-hydroxylase Beta-carotene hydroxylase (CrtR), the carotenoid zeaxanthin biosynthetic enzyme catalyzes the addition of hydroxyl groups to the beta-ionone rings of beta-carotene to form zeaxanthin and is found in bacteria and red algae. Carotenoids are important natural pigments; zeaxanthin and lutein are the only dietary carotenoids that accumulate in the macular region of the retina and lens. It is proposed that these carotenoids protect ocular tissues against photooxidative damage. CrtR does not show overall amino acid sequence similarity to the beta-carotene hydroxylases similar to CrtZ, an astaxanthin biosynthetic beta-carotene hydroxylase. However, CrtR does show sequence similarity to the green alga, Haematococcus pluvialis, beta-carotene ketolase (CrtW), which converts beta-carotene to canthaxanthin. Sequences of the CrtR_beta-carotene-hydroxylase domain family, as well as, the CrtW_beta-carotene-ketolase domain family appear to be structurally related
Probab=96.13 E-value=0.013 Score=52.67 Aligned_cols=50 Identities=18% Similarity=0.216 Sum_probs=38.4
Q ss_pred hcccccCChHHHHHHHHHHHHhcccchhhhhhhhhhcccCCCCC-CCCCcc
Q psy13035 96 AHRTYSAKWPLRLILMLANSMAFQNHLYEWVRDHRVHHKFTDTD-ADPHNS 145 (293)
Q Consensus 96 sHRSfka~~~lr~~L~~~g~la~Qgs~~~Wv~~HR~HH~~sDt~-~DPHsp 145 (293)
+|+++.-++++..++..+..+..-.|...|...|.+||+++.++ +||-..
T Consensus 46 ~H~~~~~~~~~N~~~g~~~~~~~~~~~~~w~~~H~~HH~~~~~~~~DpD~~ 96 (207)
T cd03514 46 SHKAASRNRWINELIGHVSAFFLGFPFPVFRRVHMQHHAHTNDPEKDPDHF 96 (207)
T ss_pred ccccccCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCcCcCCcCccHH
Confidence 78888878887777765544544457889999999999999874 887544
No 11
>cd03510 Rhizobitoxine-FADS-like This CD includes the dihydrorhizobitoxine fatty acid desaturase (RtxC) characterized in Bradyrhizobium japonicum USDA110, and other related proteins. Dihydrorhizobitoxine desaturase is reported to be involved in the final step of rhizobitoxine biosynthesis. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXX(X)HH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=95.74 E-value=0.034 Score=48.85 Aligned_cols=51 Identities=24% Similarity=0.258 Sum_probs=38.3
Q ss_pred hhcccccCChHHHHHHH-HHHHHhcccchhhhhhhhhhcccCCCCCCCCCcc
Q psy13035 95 WAHRTYSAKWPLRLILM-LANSMAFQNHLYEWVRDHRVHHKFTDTDADPHNS 145 (293)
Q Consensus 95 ~sHRSfka~~~lr~~L~-~~g~la~Qgs~~~Wv~~HR~HH~~sDt~~DPHsp 145 (293)
.+|+++--++.+..++. ++.++..-.+...|-..|..||+++.+++||--.
T Consensus 42 a~H~~l~~~~~~N~~~g~~~~~~p~~~~~~~~r~~H~~HH~~~~~~~Dpd~~ 93 (175)
T cd03510 42 AAHGLLFRNRRLNDFLGNWLAAVPIFQSLAAYRRSHLKHHRHLGTEDDPDLA 93 (175)
T ss_pred HHHhcccccccHHHHHHHHHHHhhhhCCHHHHHHHHHHHhCccCCCCCCcHH
Confidence 36777777778877765 3433433447779999999999999999998765
No 12
>cd03509 DesA_FADS-like Fatty acid desaturase protein family subgroup, a delta-12 acyl-lipid desaturase-like, DesA-like, yet uncharacterized subgroup of membrane fatty acid desaturase proteins found in alpha-, beta-, and gamma-proteobacteria. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of these sequences also reveals three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=95.51 E-value=0.073 Score=50.50 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=36.1
Q ss_pred hcccccCChHHHHHHHHHHHHhcccchhhhhhhhhhcccCCC---CCCCCCcc
Q psy13035 96 AHRTYSAKWPLRLILMLANSMAFQNHLYEWVRDHRVHHKFTD---TDADPHNS 145 (293)
Q Consensus 96 sHRSfka~~~lr~~L~~~g~la~Qgs~~~Wv~~HR~HH~~sD---t~~DPHsp 145 (293)
+|+++--++++.-++..+. +..--+...|-..|-.||++++ .|.||-+.
T Consensus 49 ~Hg~~~~~~~~N~~~g~~~-~~l~~p~~~wr~~H~~HH~~~nl~~~~~Dpd~~ 100 (288)
T cd03509 49 LHGHPTRSRWVNEALGYPP-LALWYPYTRYRDTHLAHHRDEDLTDPGDDPESN 100 (288)
T ss_pred hccCcccChHHHHHHHHHH-HHHhcCHHHHHHHHHHHcCCCCCCCCCCCCccc
Confidence 6889988888888876552 2222466699999999999985 35788654
No 13
>cd03512 Alkane-hydroxylase Alkane hydroxylase is a bacterial, integral-membrane di-iron enzyme that shares a requirement for iron and oxygen for activity similar to that of the non-heme integral-membrane acyl coenzyme A (CoA) desaturases and acyl lipid desaturases. The alk genes in Pseudomonas oleovorans encode conversion of alkanes to acyl CoA. The alkane omega-hydroxylase (AlkB) system is responsible for the initial oxidation of inactivated alkanes. It is a three-component system comprising a soluble NADH-rubredoxin reductase (AlkT), a soluble rubredoxin (AlkG), and the integral membrane oxygenase (AlkB). AlkB utilizes the oxygen rebound mechanism to hydroxylate alkanes. This mechanism involves homolytic cleavage of the C-H bond by an electrophilic metal-oxo intermediate to generate a substrate-based radical. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. The active
Probab=95.47 E-value=0.07 Score=51.22 Aligned_cols=54 Identities=26% Similarity=0.303 Sum_probs=31.6
Q ss_pred hhhcccccCChHHHHHHHHHHHHhcccchhhhhhhhhhcccCCCCCCCCCccccCc-hhh
Q psy13035 94 LWAHRTYSAKWPLRLILMLANSMAFQNHLYEWVRDHRVHHKFTDTDADPHNSRRGF-FFS 152 (293)
Q Consensus 94 l~sHRSfka~~~lr~~L~~~g~la~Qgs~~~Wv~~HR~HH~~sDt~~DPHsp~rGf-~~s 152 (293)
-..||+-+.++++-.++. ... +..-+....||.||++..|++||-++++|= +|+
T Consensus 93 el~Hr~~~lnr~lg~~~~---~~~--~~~~~~~~H~~~HH~~v~tp~DP~tar~ge~~y~ 147 (314)
T cd03512 93 ELIHRRSRLERWLGKLLL---ASL--LYGHFAIEHVRGHHRYVATPEDPATARRGESFYR 147 (314)
T ss_pred hccCCCChHHHHHHHHHH---HHh--cccceeeeecccCCCCCCCCCCccccccCccHHH
Confidence 345766444444443322 212 222234444568999999999999996553 344
No 14
>COG3239 DesA Fatty acid desaturase [Lipid metabolism]
Probab=95.27 E-value=0.062 Score=52.14 Aligned_cols=49 Identities=14% Similarity=0.139 Sum_probs=41.3
Q ss_pred hhcccccCChHHHHHHHHHHHHhcccchhhhhhhhhhcccCCCCCCCCC
Q psy13035 95 WAHRTYSAKWPLRLILMLANSMAFQNHLYEWVRDHRVHHKFTDTDADPH 143 (293)
Q Consensus 95 ~sHRSfka~~~lr~~L~~~g~la~Qgs~~~Wv~~HR~HH~~sDt~~DPH 143 (293)
-.|+||.-++++--++..+.+...-.++..|=..|.+||++|.+++||.
T Consensus 85 ~~Hgs~~~~r~iNd~ig~l~~~~~~~p~~~wR~~H~~HH~~t~~~~~d~ 133 (343)
T COG3239 85 CGHGSFFKNRWINDLIGHLAAALLLAPPVFWRISHNQHHAHTNILDDDP 133 (343)
T ss_pred ccccchhhhhhHHHHHHHHHHHHHhcChhhhhhhHHHhhcccCCCCCCH
Confidence 3699998899988887766666666789999999999999999888884
No 15
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=95.23 E-value=0.064 Score=54.43 Aligned_cols=43 Identities=14% Similarity=0.083 Sum_probs=31.8
Q ss_pred hcccccCChHHHHHHH-HHHHHhcccchhhhhhhhhhcccCCCC
Q psy13035 96 AHRTYSAKWPLRLILM-LANSMAFQNHLYEWVRDHRVHHKFTDT 138 (293)
Q Consensus 96 sHRSfka~~~lr~~L~-~~g~la~Qgs~~~Wv~~HR~HH~~sDt 138 (293)
.|+++.-++++--++. ++|.+..-.|..+|-..|-.||+++..
T Consensus 183 ~H~~~~~~~~~N~~~g~~~g~l~~G~S~~wW~~~Hn~HH~~tN~ 226 (485)
T PLN03199 183 LHHQVFKKRKHGDLGGIFWGDLMQGFSMQWWKNKHNGHHAVPNL 226 (485)
T ss_pred hhhhhhCCchHHHHHHHHHHHhccCCChHHHHHHHhhhhcCcCc
Confidence 5777766666655544 555555556899999999999999984
No 16
>cd03507 Delta12-FADS-like The Delta12 Fatty Acid Desaturase (Delta12-FADS)-like CD includes the integral-membrane enzymes, delta-12 acyl-lipid desaturases, oleate 12-hydroxylases, omega3 and omega6 fatty acid desaturases, and other related proteins, found in a wide range of organisms including higher plants, green algae, diatoms, nematodes, fungi, and bacteria. The expression of these proteins appears to be temperature dependent: decreases in temperature result in increased levels of fatty acid desaturation within membrane lipids subsequently altering cell membrane fluidity. An important enzyme for the production of polyunsaturates in plants is the oleate delta-12 desaturase (Arabidopsis FAD2) of the endoplasmic reticulum. This enzyme accepts l-acyl-2-oleoyl-sn-glycero-3-phosphocholine as substrate and requires NADH:cytochrome b oxidoreductase, cytochrome b, and oxygen for activity. FAD2 converts oleate(18:1) to linoleate (18:2) and is closely related to oleate 12-hydroxylase which cat
Probab=95.08 E-value=0.11 Score=47.14 Aligned_cols=58 Identities=21% Similarity=0.235 Sum_probs=41.6
Q ss_pred heehhhhhhhhcccccCChHHHHHHHHHHHHhcccchhhhhhhhhhcccCCCC-CCCCCc
Q psy13035 86 GVTAGAHRLWAHRTYSAKWPLRLILMLANSMAFQNHLYEWVRDHRVHHKFTDT-DADPHN 144 (293)
Q Consensus 86 GiT~GyHRl~sHRSfka~~~lr~~L~~~g~la~Qgs~~~Wv~~HR~HH~~sDt-~~DPHs 144 (293)
|.-+-.|=. .|+++-.++++..++..+..+....+.-.|...|.+||+++.+ ++||--
T Consensus 46 ~l~~l~He~-~H~~~~~~~~~N~~~g~~~~~~~~~p~~~w~~~H~~HH~~~~~~~~D~~~ 104 (222)
T cd03507 46 GLFVLGHDC-GHGSFSDNRRLNDIVGHILHSPLLVPYHSWRISHNRHHAHTGNLEGDEVW 104 (222)
T ss_pred HHHHHhhcc-CCcccccchhHHHHHHHHHHHHHhCChHHHHHHHHHHHhccCCCCCCCcc
Confidence 333344544 7999988888887777544444446888999999999999875 777654
No 17
>PLN02505 omega-6 fatty acid desaturase
Probab=94.79 E-value=0.11 Score=51.50 Aligned_cols=47 Identities=26% Similarity=0.345 Sum_probs=35.7
Q ss_pred hcccccCChHHHHHHH-HHHHHhcccchhhhhhhhhhcccCCCC-CCCCC
Q psy13035 96 AHRTYSAKWPLRLILM-LANSMAFQNHLYEWVRDHRVHHKFTDT-DADPH 143 (293)
Q Consensus 96 sHRSfka~~~lr~~L~-~~g~la~Qgs~~~Wv~~HR~HH~~sDt-~~DPH 143 (293)
.|+||--++++.-++. +++. ....+...|-..|+.||+++.. ++||-
T Consensus 108 gH~s~~~~~~lN~~vG~i~~~-~ll~p~~~Wr~~H~~HH~~tn~~~~D~~ 156 (381)
T PLN02505 108 GHHAFSDYQWLDDTVGLVLHS-ALLVPYFSWKYSHRRHHSNTGSLERDEV 156 (381)
T ss_pred cchhhhCChHHHHHHHHHHHH-HHcCCHHHHHHHHHHHhhccCCCCCCcc
Confidence 5888888877777665 4443 3457888999999999999974 66763
No 18
>PLN03198 delta6-acyl-lipid desaturase; Provisional
Probab=94.75 E-value=0.15 Score=52.42 Aligned_cols=46 Identities=13% Similarity=0.135 Sum_probs=35.2
Q ss_pred hhcccccCChHHHHHHHHH-HHHhcccchhhhhhhhhhcccCCCCCC
Q psy13035 95 WAHRTYSAKWPLRLILMLA-NSMAFQNHLYEWVRDHRVHHKFTDTDA 140 (293)
Q Consensus 95 ~sHRSfka~~~lr~~L~~~-g~la~Qgs~~~Wv~~HR~HH~~sDt~~ 140 (293)
..|+++.-++++.-++..+ +.+..-.|..+|-..|..||.++...+
T Consensus 257 ~~H~s~~~~~~~n~~~g~~~~~~~~G~s~~~W~~~Hn~HH~~tN~~~ 303 (526)
T PLN03198 257 FLHNQVFETRWLNEVVGYLIGNAVLGFSTGWWKEKHNLHHAAPNECD 303 (526)
T ss_pred cccccccCCcHHHHHHHHHHHHhhcCCCHHHHHHHHHHhccCCCCCC
Confidence 3688887777777766543 555555789999999999999998653
No 19
>cd03508 Delta4-sphingolipid-FADS-like The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase (MLD), reported to modulate biosynthesis of the epidermal growth factor receptor; and other related proteins. These proteins are found in various eukaryotes including vertebrates, higher plants, and fungi. Studies show that MLD is localized to the endoplasmic reticulum. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for
Probab=94.74 E-value=0.11 Score=49.36 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=32.7
Q ss_pred hcccccCChHHHHHHHHHHHHhcccchh--hhhhhhhhcccCCCCC-CCCCcc
Q psy13035 96 AHRTYSAKWPLRLILMLANSMAFQNHLY--EWVRDHRVHHKFTDTD-ADPHNS 145 (293)
Q Consensus 96 sHRSfka~~~lr~~L~~~g~la~Qgs~~--~Wv~~HR~HH~~sDt~-~DPHsp 145 (293)
+|+++--++.+-.++..+..+ ..|.|. .|-..|..||+++.++ .||=-+
T Consensus 67 ~H~~~f~~~~~N~~~g~~~~~-~~g~p~~~~~r~~H~~HH~~~n~~~~DpDi~ 118 (289)
T cd03508 67 SHNLAFGKPLWNRLFGIFANL-PIGVPYSISFKKYHLEHHRYLGEDGLDTDIP 118 (289)
T ss_pred HHHhhcCChHHHHHHHHHHHH-HhcCChhhHHHHHHHHhccCCCCCCCCCCcc
Confidence 588777777777776654433 233333 5788999999999764 477544
No 20
>PLN02579 sphingolipid delta-4 desaturase
Probab=94.32 E-value=0.15 Score=49.37 Aligned_cols=57 Identities=14% Similarity=0.053 Sum_probs=39.9
Q ss_pred ehhhhhhhhcccccCChHHHHHHHHHHHH-hcccchhhhhhhhhhcccCCC-CCCCCCcc
Q psy13035 88 TAGAHRLWAHRTYSAKWPLRLILMLANSM-AFQNHLYEWVRDHRVHHKFTD-TDADPHNS 145 (293)
Q Consensus 88 T~GyHRl~sHRSfka~~~lr~~L~~~g~l-a~Qgs~~~Wv~~HR~HH~~sD-t~~DPHsp 145 (293)
.+..|= .+|+++--++++-.++..+..+ .+.....+|-+.|..||+++. .+.||--+
T Consensus 89 f~~~HD-~~Hg~~f~~~~~N~~lg~~~~l~~g~~~~~~~~~~H~~HH~~~n~~~~D~Di~ 147 (323)
T PLN02579 89 FLAIHE-LSHNLAFKTPVYNRWLGIFANLPIGIPMSVTFQKYHLEHHRFQGVDGIDMDIP 147 (323)
T ss_pred HHHHHH-hhHhhhcCCHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHccCCCCCCCCCCCC
Confidence 334453 3688888888888888776544 444345579899999999996 34577655
No 21
>PLN02598 omega-6 fatty acid desaturase
Probab=92.70 E-value=0.35 Score=48.51 Aligned_cols=57 Identities=19% Similarity=0.237 Sum_probs=41.7
Q ss_pred hheehhhhhhhhcccccCChHHHHHHHHHHHHhcccchhhhhhhhhhcccCCC-CCCCC
Q psy13035 85 EGVTAGAHRLWAHRTYSAKWPLRLILMLANSMAFQNHLYEWVRDHRVHHKFTD-TDADP 142 (293)
Q Consensus 85 lGiT~GyHRl~sHRSfka~~~lr~~L~~~g~la~Qgs~~~Wv~~HR~HH~~sD-t~~DP 142 (293)
.|+-+-.|= ..|++|--++++.-++..+..+..--+...|-..|+.||+++. .++||
T Consensus 137 ~~l~vl~He-c~H~s~~~~~~lN~~vG~~~~~~ll~p~~~wr~~H~~HH~~tn~~~~D~ 194 (421)
T PLN02598 137 TGFFVIGHD-CGHNSFSKNQLVEDIVGTIAFTPLIYPFEPWRIKHNTHHAHTNKLVMDT 194 (421)
T ss_pred HHHHHHHHh-ccccCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccCcCCCCCCC
Confidence 344444453 2699998888888877655444444688899999999999997 57785
No 22
>PLN02498 omega-3 fatty acid desaturase
Probab=92.66 E-value=0.35 Score=48.93 Aligned_cols=48 Identities=19% Similarity=0.258 Sum_probs=38.3
Q ss_pred hcccccCChHHHHHHHHHHHHhcccchhhhhhhhhhcccCCC-CCCCCC
Q psy13035 96 AHRTYSAKWPLRLILMLANSMAFQNHLYEWVRDHRVHHKFTD-TDADPH 143 (293)
Q Consensus 96 sHRSfka~~~lr~~L~~~g~la~Qgs~~~Wv~~HR~HH~~sD-t~~DPH 143 (293)
.|++|--++++.-++..+......-+...|-..|+.||+++. .|+||-
T Consensus 172 gHgsf~~~k~lNd~vG~ll~~~ll~py~~Wr~sH~~HH~~Tn~~e~D~~ 220 (450)
T PLN02498 172 GHGSFSNNPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDES 220 (450)
T ss_pred cccccccChHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 689998888888777765555556788999999999999996 466764
No 23
>KOG4232|consensus
Probab=85.30 E-value=10 Score=38.20 Aligned_cols=55 Identities=16% Similarity=0.125 Sum_probs=40.4
Q ss_pred hhhhhcccccCChHHHHHHHHHHHHhcccchhhhhhhhhhcccCCCC-CCCCCccc
Q psy13035 92 HRLWAHRTYSAKWPLRLILMLANSMAFQNHLYEWVRDHRVHHKFTDT-DADPHNSR 146 (293)
Q Consensus 92 HRl~sHRSfka~~~lr~~L~~~g~la~Qgs~~~Wv~~HR~HH~~sDt-~~DPHsp~ 146 (293)
|=+.=++-||.++|=..+=.+.+..--..|.-||...|-.||.++.. ++||=+-.
T Consensus 162 Hd~gH~~i~~~~~wN~~~~~fv~n~L~G~sa~WW~~~H~~HHa~pN~~~~DpDi~~ 217 (430)
T KOG4232|consen 162 HDYGHLSIFKNSKWNHLAQKFVGNHLKGFSAAWWKSHHNQHHAAPNSLDKDPDIDF 217 (430)
T ss_pred cccccccccccccHHHHHHHHHhhhcccccHHHHHHHHhhhhccCccCCCCccccc
Confidence 34444556788888777766666554455899999999999999985 77776643
No 24
>cd00547 QFR_TypeD_subunitD Quinol:fumarate reductase (QFR) Type D subfamily, 13kD hydrophobic subunit D; QFR couples the reduction of fumarate to succinate to the oxidation of quinol to quinone, the opposite reaction to that catalyzed by the related protein, succinate:quinine oxidoreductase (SQR). QFRs oxidize low potential quinols such as menaquinol and are involved in anaerobic respiration with fumarate as the terminal electron acceptor. SQR and QFR share a common subunit arrangement, composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type D as they contain two transmembrane subunits (C and D) and no heme groups. The structural arrangement allows efficient electron transfer between the catalytic subunit, through iron-sulfur centers, and the transmembrane subunit containing the electron donor (quinol). The quinone binding site resides in the transmembrane subunits.
Probab=57.14 E-value=18 Score=30.25 Aligned_cols=45 Identities=29% Similarity=0.540 Sum_probs=35.2
Q ss_pred hhe---ehhhhhhhhcccccCChHHHHHHHHHHHHhcccchhhhhhhhhhcccCCCC
Q psy13035 85 EGV---TAGAHRLWAHRTYSAKWPLRLILMLANSMAFQNHLYEWVRDHRVHHKFTDT 138 (293)
Q Consensus 85 lGi---T~GyHRl~sHRSfka~~~lr~~L~~~g~la~Qgs~~~Wv~~HR~HH~~sDt 138 (293)
+|+ ...|.|..+ |-.++.-+.++..+-. ---|.+.||.||.--|-
T Consensus 38 lG~~~~a~~y~~i~a---Fa~s~iG~l~ll~~i~------lplWh~~HRihh~lHDl 85 (115)
T cd00547 38 LGLIPAALSYDRIIA---FAQSWIGKLFLLVLII------LPMWHAMHRIHHGLHDL 85 (115)
T ss_pred ccCcccccCHHHHHH---HHHhHHHHHHHHHHHH------HHHHHHHHHHHHhhhcc
Confidence 666 689999986 8888888887766543 34699999999988773
No 25
>PRK05470 fumarate reductase subunit D; Provisional
Probab=54.71 E-value=20 Score=30.17 Aligned_cols=44 Identities=30% Similarity=0.505 Sum_probs=34.5
Q ss_pred hhe----ehhhhhhhhcccccCChHHHHHHHHHHHHhcccchhhhhhhhhhcccCCC
Q psy13035 85 EGV----TAGAHRLWAHRTYSAKWPLRLILMLANSMAFQNHLYEWVRDHRVHHKFTD 137 (293)
Q Consensus 85 lGi----T~GyHRl~sHRSfka~~~lr~~L~~~g~la~Qgs~~~Wv~~HR~HH~~sD 137 (293)
+|+ ...|.|..+ |-.++.-+.++..+-. ---|.+.||.||.--|
T Consensus 41 lG~~~~~a~sy~~i~a---Fa~s~iG~l~ll~~i~------lplWh~~HRihHglHD 88 (118)
T PRK05470 41 LGLFPGDALSYERVLA---FAQSFIGKLFLLLMIV------LPLWCGLHRIHHGMHD 88 (118)
T ss_pred ccCCCccccCHHHHHH---HHHhHHHHHHHHHHHH------HHHHHHHHHHHHHHhc
Confidence 674 578999976 8888888887766553 3469999999998877
No 26
>PLN02601 beta-carotene hydroxylase
Probab=39.85 E-value=27 Score=33.56 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=25.1
Q ss_pred Hhheeh------hhhhhhhcccccCChH--HHHHHHHHHHHhcccchhhhhhhhhhccc
Q psy13035 84 REGVTA------GAHRLWAHRTYSAKWP--LRLILMLANSMAFQNHLYEWVRDHRVHHK 134 (293)
Q Consensus 84 ~lGiT~------GyHRl~sHRSfka~~~--lr~~L~~~g~la~Qgs~~~Wv~~HR~HH~ 134 (293)
++|||+ ..|=.++||-|+..+- ..|+=. =++-|+.||+
T Consensus 214 GlGITlYGiaYffVHDgLVHqRfp~~~~a~~~Y~rr-------------l~~AHklHHa 259 (303)
T PLN02601 214 GLGITVFGMAYMFVHDGLVHKRFPVGPIANVPYLRK-------------VAAAHQLHHT 259 (303)
T ss_pred HHhHHHHHHHHHHHhhhhhccccccCCCCCCHHHHH-------------HHHHHHhhcc
Confidence 366664 4799999999976532 222222 2457999999
No 27
>COG3080 FrdD Fumarate reductase subunit D [Energy production and conversion]
Probab=38.26 E-value=11 Score=31.31 Aligned_cols=15 Identities=40% Similarity=0.804 Sum_probs=12.9
Q ss_pred hhhhhhhhcccCCCC
Q psy13035 124 EWVRDHRVHHKFTDT 138 (293)
Q Consensus 124 ~Wv~~HR~HH~~sDt 138 (293)
-|.+.||.||.-.|-
T Consensus 75 lw~a~HRihHgmhdl 89 (118)
T COG3080 75 LWCALHRIHHGMHDL 89 (118)
T ss_pred HHHHHHHHHhhhhhe
Confidence 489999999998874
No 28
>PF04116 FA_hydroxylase: Fatty acid hydroxylase superfamily; InterPro: IPR006694 This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases. Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways []. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax. These enzymes contain two copies of a HXHH motif. Members of this family are integral membrane proteins.; GO: 0005506 iron ion binding, 0016491 oxidoreductase activity, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process
Probab=37.08 E-value=19 Score=28.03 Aligned_cols=14 Identities=43% Similarity=0.793 Sum_probs=9.7
Q ss_pred chhhhhhhhhhcccC
Q psy13035 121 HLYEWVRDHRVHHKF 135 (293)
Q Consensus 121 s~~~Wv~~HR~HH~~ 135 (293)
.+.-| +.|+.||+.
T Consensus 22 ~~~l~-~~H~~HH~~ 35 (114)
T PF04116_consen 22 IPFLW-RIHKVHHSP 35 (114)
T ss_pred CchHH-HHHHHHhCC
Confidence 34456 789999944
No 29
>PLN02601 beta-carotene hydroxylase
Probab=36.95 E-value=30 Score=33.23 Aligned_cols=13 Identities=31% Similarity=0.212 Sum_probs=8.1
Q ss_pred eehhhhhhhhccc
Q psy13035 87 VTAGAHRLWAHRT 99 (293)
Q Consensus 87 iT~GyHRl~sHRS 99 (293)
+.-..|||.-|.+
T Consensus 150 ~Aw~aHKYvMHG~ 162 (303)
T PLN02601 150 WARWAHRALWHDS 162 (303)
T ss_pred HHHHHHHHHHHhc
Confidence 3344777777764
No 30
>PF10520 Kua-UEV1_localn: Kua-ubiquitin conjugating enzyme hybrid localisation domain; InterPro: IPR019547 This entry represents part of the transcript of the fusion of two genes, the UEV1. UEV1 is an enzymatically inactive variant of the E2 ubiquitin-conjugating enzymes that regulate non-canonical elongation of ubiquitin chains, and Kua, an otherwise unknown gene. UEV1A is a nuclear protein, whereas both Kua and Kua-UEV localise to cytoplasmic structures, indicating that the addition of a Kua domain to UEV confers new biological properties. UEV1-Kua carries the B domain with its characteristic double histidine motif, and it is probably this domain which determines the cytoplasmic localisation. It is postulated that this hybrid transcript could preferentially direct the variant polyubiquitination of substrates closely associated with the cytoplasmic face of the endoplasmic reticulum, possibly, although not necessarily, in conjunction with membrane-bound ubiquitin-conjugating enzymes [].
Probab=36.56 E-value=74 Score=28.47 Aligned_cols=42 Identities=29% Similarity=0.369 Sum_probs=25.1
Q ss_pred hheehhhhhhhhcccccCChHHHHHHHHHHHHhcccchhhhhhhhhhcccC
Q psy13035 85 EGVTAGAHRLWAHRTYSAKWPLRLILMLANSMAFQNHLYEWVRDHRVHHKF 135 (293)
Q Consensus 85 lGiT~GyHRl~sHRSfka~~~lr~~L~~~g~la~Qgs~~~Wv~~HR~HH~~ 135 (293)
...|--.|+ |||.-.+.++++++ |.=+|.+. |+ +.||.||+-
T Consensus 95 v~~tnq~Hk-WsH~~~~~P~~V~~-LQ~~gill---sr----~~H~~HH~a 136 (178)
T PF10520_consen 95 VAFTNQFHK-WSHTYKSLPPWVRF-LQDAGILL---SR----KHHRIHHVA 136 (178)
T ss_pred HHHHHHHHH-HHcCCCCCCHHHHH-HHHCCccc---Cc----hhhhccccC
Confidence 444444787 89998885555554 33333222 33 478999963
No 31
>PF02313 Fumarate_red_D: Fumarate reductase subunit D; InterPro: IPR003418 Fumarate reductase is a membrane-bound flavoenzyme consisting of four subunits, A-B. A and B comprise the membrane-extrinsic catalytic domain and C and D link the catalytic centres to the electron-transport chain. This family consists of the 13kDa hydrophobic subunit D. This component may be required to anchor the catalytic components of the fumarate reductase complex to the cytoplasmic membrane.; GO: 0006106 fumarate metabolic process, 0016020 membrane; PDB: 3P4R_P 1KF6_P 3P4Q_P 3P4S_D 3CIR_P 2B76_D 1L0V_P 3P4P_D 1KFY_P.
Probab=28.65 E-value=1.5e+02 Score=25.03 Aligned_cols=39 Identities=28% Similarity=0.584 Sum_probs=28.5
Q ss_pred hhhhhhhcccccCChHHHHHHHHHHHHhcccchhhhhhhhhhcccCCC
Q psy13035 90 GAHRLWAHRTYSAKWPLRLILMLANSMAFQNHLYEWVRDHRVHHKFTD 137 (293)
Q Consensus 90 GyHRl~sHRSfka~~~lr~~L~~~g~la~Qgs~~~Wv~~HR~HH~~sD 137 (293)
.|+|.. +|-.++.-+.++..+-+ ---|.+.||.||---|
T Consensus 50 sy~~i~---~f~~~~~g~l~ll~~i~------lplwha~HRi~h~lHD 88 (118)
T PF02313_consen 50 SYERIL---AFAQSWIGKLFLLGVIA------LPLWHAAHRIHHGLHD 88 (118)
T ss_dssp SHHHHH---HHHTSHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
T ss_pred CHHHHH---HHHhchHHHHHHHHHHH------HHHHHHHHHHHHHHhc
Confidence 488885 57778887777655443 3469999999997655
Done!