Query psy13035
Match_columns 293
No_of_seqs 148 out of 1102
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 17:48:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13035.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13035hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kf6_D Fumarate reductase 13 k 32.3 78 0.0027 25.5 5.4 44 85-137 42-89 (119)
2 3h8d_A Myosin-VI; myosin VI, m 21.8 14 0.00048 30.5 -0.8 22 136-157 25-46 (141)
3 2byg_A Channel associated prot 10.2 59 0.002 24.8 0.0 14 132-145 4-18 (117)
4 3l4f_D SH3 and multiple ankyri 8.4 96 0.0033 24.2 0.6 19 127-145 3-23 (132)
5 3b76_A E3 ubiquitin-protein li 8.1 81 0.0028 24.3 0.0 17 129-145 2-18 (118)
6 3v4y_B Nuclear inhibitor of pr 7.6 1.3E+02 0.0043 21.6 0.8 16 7-22 47-62 (62)
7 3j21_L 50S ribosomal protein L 7.6 1.7E+02 0.0057 24.1 1.7 21 130-150 42-64 (147)
8 1whr_A Hypothetical KIAA1002 p 6.2 1.1E+02 0.0039 24.4 -0.0 14 85-98 54-67 (124)
9 3b1s_A Flagellar biosynthetic 7.8 1.3E+02 0.0045 20.7 0.0 11 135-145 14-24 (52)
10 2vt1_A Surface presentation of 5.5 1.3E+02 0.0045 20.7 0.0 10 135-144 14-23 (52)
No 1
>1kf6_D Fumarate reductase 13 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_D* 1l0v_D* 2b76_D* 3cir_D* 3p4p_D* 3p4q_D* 3p4r_D* 3p4s_D*
Probab=32.29 E-value=78 Score=25.50 Aligned_cols=44 Identities=27% Similarity=0.474 Sum_probs=31.5
Q ss_pred hhe----ehhhhhhhhcccccCChHHHHHHHHHHHHhcccchhhhhhhhhhcccCCC
Q psy13035 85 EGV----TAGAHRLWAHRTYSAKWPLRLILMLANSMAFQNHLYEWVRDHRVHHKFTD 137 (293)
Q Consensus 85 lGi----T~GyHRl~sHRSfka~~~lr~~L~~~g~la~Qgs~~~Wv~~HR~HH~~sD 137 (293)
+|+ +..|.|.. +|-.++.-+.++...-. ---|.+.||.||.--|
T Consensus 42 lG~~~~~~lsY~~~~---aFa~s~ig~l~ll~~i~------lplWh~~HRihh~lHD 89 (119)
T 1kf6_D 42 LGLFPGDALSYERVL---AFAQSFIGRVFLFLMIV------LPLWCGLHRMHHAMHD 89 (119)
T ss_dssp GTCSSTTTTSHHHHH---HHHTSHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
T ss_pred ccCCCcccccHHHHH---HHHhcHHHHHHHHHHHH------HHHHHHHHHHHHhhhh
Confidence 665 34788875 57777777777665443 3469999999998776
No 2
>3h8d_A Myosin-VI; myosin VI, myosin 6, DAB2, cargo binding, protein-peptide complex, actin-binding, ATP-binding, calmodulin-binding; 2.20A {Mus musculus} PDB: 2kia_A
Probab=21.77 E-value=14 Score=30.51 Aligned_cols=22 Identities=27% Similarity=0.702 Sum_probs=18.2
Q ss_pred CCCCCCCCccccCchhhhhhhh
Q psy13035 136 TDTDADPHNSRRGFFFSHMGWL 157 (293)
Q Consensus 136 sDt~~DPHsp~rGf~~sH~GWl 157 (293)
+|..++|.++++|.||+|+.=.
T Consensus 25 ~~~~k~~~~~k~G~WYAHFdGq 46 (141)
T 3h8d_A 25 ADQYKDPQNKKKGWWYAHFDGP 46 (141)
T ss_dssp GGTTSCGGGCCEEEEEEEEETT
T ss_pred cccccCCCCcccceEEEeeCCh
Confidence 5778889999999999997543
No 3
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=10.21 E-value=59 Score=24.84 Aligned_cols=14 Identities=29% Similarity=0.475 Sum_probs=0.0
Q ss_pred cccCC-CCCCCCCcc
Q psy13035 132 HHKFT-DTDADPHNS 145 (293)
Q Consensus 132 HH~~s-Dt~~DPHsp 145 (293)
||.++ +.+.||||-
T Consensus 4 ~~~~~~~~~~dp~s~ 18 (117)
T 2byg_A 4 HHHHSSGVDLGTENL 18 (117)
T ss_dssp ---------------
T ss_pred cccccCccCCCCccc
Confidence 33444 468999986
No 4
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=8.43 E-value=96 Score=24.23 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=4.4
Q ss_pred hhhhhcccCCC--CCCCCCcc
Q psy13035 127 RDHRVHHKFTD--TDADPHNS 145 (293)
Q Consensus 127 ~~HR~HH~~sD--t~~DPHsp 145 (293)
..|..||.+.+ ...||||+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~s~ 23 (132)
T 3l4f_D 3 SSHHHHHHSQDPLVPRGSGSD 23 (132)
T ss_dssp ----------------CCSCC
T ss_pred cchhhhhhhcCCCccCCCCCC
Confidence 35777777777 47899987
No 5
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=8.08 E-value=81 Score=24.27 Aligned_cols=17 Identities=29% Similarity=0.429 Sum_probs=0.6
Q ss_pred hhhcccCCCCCCCCCcc
Q psy13035 129 HRVHHKFTDTDADPHNS 145 (293)
Q Consensus 129 HR~HH~~sDt~~DPHsp 145 (293)
|..||.-+..+.||+|.
T Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (118)
T 3b76_A 2 HHHHHHSSGVDLGTENL 18 (118)
T ss_dssp ----------------C
T ss_pred CcCCccccCCCCCcccc
Confidence 55566666789999976
No 6
>3v4y_B Nuclear inhibitor of protein phosphatase 1; PP1, Ser/Thr phosphatase, NIPP1, IDP, hydrolase; HET: GOL 15P; 2.10A {Homo sapiens}
Probab=7.65 E-value=1.3e+02 Score=21.61 Aligned_cols=16 Identities=25% Similarity=0.420 Sum_probs=11.8
Q ss_pred ccccccccccCCCccC
Q psy13035 7 PHFLSEAEVISPSVYP 22 (293)
Q Consensus 7 ~~~~~~~~~~~~~~~~ 22 (293)
-+|.-+-||+||.|++
T Consensus 47 V~F~eeeeIINPEDVD 62 (62)
T 3v4y_B 47 VTFSEDDEIINPEDVD 62 (62)
T ss_dssp CEECSCCEESCCCC--
T ss_pred cccCCcccccCcccCC
Confidence 4688889999998863
No 7
>3j21_L 50S ribosomal protein L15P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=7.56 E-value=1.7e+02 Score=24.06 Aligned_cols=21 Identities=43% Similarity=0.544 Sum_probs=14.4
Q ss_pred hhcccCCCCCC-CC-CccccCch
Q psy13035 130 RVHHKFTDTDA-DP-HNSRRGFF 150 (293)
Q Consensus 130 R~HH~~sDt~~-DP-Hsp~rGf~ 150 (293)
|.||.++..+. +| |-|++||-
T Consensus 42 ~~~H~~~~~~ky~p~~~pK~GF~ 64 (147)
T 3j21_L 42 RNKSKWTWTIKYAPDHLGKRGFS 64 (147)
T ss_dssp SSSSSSSCSSSSCSCCSCCCSCC
T ss_pred cCcccEEEEeecCCCcCCcCCCC
Confidence 46777776543 44 77899985
No 8
>1whr_A Hypothetical KIAA1002 protein; R3H domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.68.7.1
Probab=6.19 E-value=1.1e+02 Score=24.41 Aligned_cols=14 Identities=29% Similarity=0.323 Sum_probs=10.8
Q ss_pred hheehhhhhhhhcc
Q psy13035 85 EGVTAGAHRLWAHR 98 (293)
Q Consensus 85 lGiT~GyHRl~sHR 98 (293)
|.-.-.|||+++||
T Consensus 54 f~pmnSy~RllvHr 67 (124)
T 1whr_A 54 FPQMTSYHRMLLHR 67 (124)
T ss_dssp CCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH
Confidence 44446799999998
No 9
>3b1s_A Flagellar biosynthetic protein FLHB; type III secretion system, protein transport, MEMB protein; 2.55A {Aquifex aeolicus}
Probab=7.77 E-value=1.3e+02 Score=20.69 Aligned_cols=11 Identities=9% Similarity=0.434 Sum_probs=7.8
Q ss_pred CCCCCCCCCcc
Q psy13035 135 FTDTDADPHNS 145 (293)
Q Consensus 135 ~sDt~~DPHsp 145 (293)
|-++|+||+=-
T Consensus 14 ~Ke~EGdP~iK 24 (52)
T 3b1s_A 14 YKQLEGHPEVK 24 (52)
Confidence 45788888843
No 10
>2vt1_A Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=5.55 E-value=1.3e+02 Score=20.65 Aligned_cols=10 Identities=0% Similarity=0.265 Sum_probs=0.0
Q ss_pred CCCCCCCCCc
Q psy13035 135 FTDTDADPHN 144 (293)
Q Consensus 135 ~sDt~~DPHs 144 (293)
|-++|+||+=
T Consensus 14 ~Ke~EGdP~i 23 (52)
T 2vt1_A 14 YIEQEGHFET 23 (52)
T ss_dssp ----------
T ss_pred HHhccCCHHH
Confidence 4577888884
Done!