Query psy13035
Match_columns 293
No_of_seqs 148 out of 1102
Neff 5.5
Searched_HMMs 13730
Date Fri Aug 16 17:48:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13035.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13035hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kf6d_ f.21.2.2 (D:) Fumarate 58.2 8.4 0.00061 29.2 5.5 44 85-137 42-89 (119)
2 d1k8ua_ a.39.1.2 (A:) Calcycli 7.0 39 0.0028 23.4 -0.4 53 131-187 14-71 (89)
3 d1v54g_ f.23.2.1 (G:) Mitochon 5.6 1.5E+02 0.011 20.4 2.3 19 51-69 16-34 (84)
4 d1k1aa_ d.211.1.1 (A:) bcl-3 { 4.8 1.1E+02 0.0082 21.4 1.1 15 269-283 201-215 (228)
5 d3cr5x1 a.39.1.2 (X:0-89) Calc 4.7 69 0.005 22.3 -0.2 55 131-187 14-73 (90)
6 d1xk4c1 a.39.1.2 (C:4-86) Calc 4.7 70 0.0051 21.9 -0.2 54 132-187 16-75 (83)
7 d1ksoa_ a.39.1.2 (A:) Calcycli 4.4 76 0.0055 21.9 -0.2 55 131-187 14-73 (93)
8 d1ss6a_ d.245.1.1 (A:) NSFL1 ( 4.3 1.1E+02 0.0078 21.9 0.6 31 247-278 29-59 (102)
9 d1flca2 c.23.10.2 (A:1-150,A:3 4.2 1.2E+02 0.0088 25.2 0.9 23 265-287 104-126 (271)
10 d1awcb_ d.211.1.1 (B:) GA bind 4.0 86 0.0062 21.6 -0.2 13 271-283 126-138 (153)
No 1
>d1kf6d_ f.21.2.2 (D:) Fumarate reductase subunit FrdD {Escherichia coli [TaxId: 562]}
Probab=58.18 E-value=8.4 Score=29.24 Aligned_cols=44 Identities=27% Similarity=0.453 Sum_probs=32.7
Q ss_pred hhee----hhhhhhhhcccccCChHHHHHHHHHHHHhcccchhhhhhhhhhcccCCC
Q psy13035 85 EGVT----AGAHRLWAHRTYSAKWPLRLILMLANSMAFQNHLYEWVRDHRVHHKFTD 137 (293)
Q Consensus 85 lGiT----~GyHRl~sHRSfka~~~lr~~L~~~g~la~Qgs~~~Wv~~HR~HH~~sD 137 (293)
+|+- ..|+|.. +|-.++.-+.++..+-. .--|.+.||.||.--|
T Consensus 42 lG~~~~~a~~y~~i~---aFa~s~iG~l~ll~~i~------lplWh~~HRihHglHD 89 (119)
T d1kf6d_ 42 LGLFPGDALSYERVL---AFAQSFIGRVFLFLMIV------LPLWCGLHRMHHAMHD 89 (119)
T ss_dssp GTCSSTTTTSHHHHH---HHHTSHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
T ss_pred cccCCccccCHHHHH---HHHhhHHHHHHHHHHHH------HHHHHHHHHHHHHHhh
Confidence 7764 7899986 47777877777666553 3459999999997666
No 2
>d1k8ua_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a6 [TaxId: 9606]}
Probab=6.98 E-value=39 Score=23.37 Aligned_cols=53 Identities=21% Similarity=0.354 Sum_probs=27.5
Q ss_pred hcccCCCCCCCCCccc----cCchhhhhhhhhhccChh-HhhhcCcCCCCcccCCceEEeeh
Q psy13035 131 VHHKFTDTDADPHNSR----RGFFFSHMGWLMVRKHPD-VKRRGATVDLSDLEKDWVVMFQK 187 (293)
Q Consensus 131 ~HH~~sDt~~DPHsp~----rGf~~sH~GWll~~~~p~-~~~~~~~~d~~DL~~Dp~~~~q~ 187 (293)
.=|+|+|+++|..+-. +-+.-+-.. ......++ +.+. +..-|...|-.+.|.+
T Consensus 14 vF~kya~~dg~~~~ls~~Elk~Ll~~e~~-~~~~~~~~~~~~~---~~~lD~d~Dg~IdF~E 71 (89)
T d1k8ua_ 14 IFHKYSGREGDKHTLSKKELKELIQKELT-IGSKLQDAEIARL---MEDLDRNKDQEVNFQE 71 (89)
T ss_dssp HHHHHHTSSSCTTEEEHHHHHHHHHHHSC-CGGGTTSHHHHHH---HHHHHHTTTCEEEHHH
T ss_pred HHHHHcccCCCCCeecHHHHHHHHHHHHH-hhccCCHHHHHHH---HHHhcCCCCCCCcHHH
Confidence 3489999999998642 222211111 11122222 2221 1224677888888866
No 3
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.57 E-value=1.5e+02 Score=20.44 Aligned_cols=19 Identities=21% Similarity=0.067 Sum_probs=15.4
Q ss_pred ehhHHHHHHHHHHHHHHHH
Q psy13035 51 WRNVLAFAYLHLGASYAVY 69 (293)
Q Consensus 51 W~~v~~~~~~hl~al~g~~ 69 (293)
|.++.++++++.++|.++.
T Consensus 16 Wkkis~~va~P~i~l~~~n 34 (84)
T d1v54g_ 16 WRFLTFGLALPSVALCTLN 34 (84)
T ss_dssp HHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999888888876543
No 4
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.80 E-value=1.1e+02 Score=21.40 Aligned_cols=15 Identities=33% Similarity=0.264 Sum_probs=12.2
Q ss_pred cccccCCccccccCC
Q psy13035 269 ISQELGNVVCLTPLH 283 (293)
Q Consensus 269 ~~~~~~n~~~~~~~~ 283 (293)
-.-+..|.-|.||||
T Consensus 201 ad~n~~d~~G~TpL~ 215 (228)
T d1k1aa_ 201 ADSSLKNCHNDTPLM 215 (228)
T ss_dssp CCTTCCCTTSCCTTT
T ss_pred CCCCCCCCCCCCHHH
Confidence 345678999999998
No 5
>d3cr5x1 a.39.1.2 (X:0-89) Calcyclin (S100) {Cow (Bos taurus), s100b [TaxId: 9913]}
Probab=4.74 E-value=69 Score=22.27 Aligned_cols=55 Identities=18% Similarity=0.389 Sum_probs=29.6
Q ss_pred hcccCCCCCCCCCccccC----chhhhhhhhhhc-cChhHhhhcCcCCCCcccCCceEEeeh
Q psy13035 131 VHHKFTDTDADPHNSRRG----FFFSHMGWLMVR-KHPDVKRRGATVDLSDLEKDWVVMFQK 187 (293)
Q Consensus 131 ~HH~~sDt~~DPHsp~rG----f~~sH~GWll~~-~~p~~~~~~~~~d~~DL~~Dp~~~~q~ 187 (293)
.=|+|+++++|++.-.++ +.-.-+.-.+.. +.|+..++ ....-|..+|-.+.|++
T Consensus 14 vFhkYa~~~G~~~tLsk~Elk~Ll~~El~~~l~~~~d~~~~d~--~m~~LD~n~Dg~vdF~E 73 (90)
T d3cr5x1 14 VFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDK--VMETLDSDGDGECDFQE 73 (90)
T ss_dssp HHHHHHTSSSSTTSBCHHHHHHHHHHHCTTTSCCCCSHHHHHH--HHHHHCTTSSSSBCHHH
T ss_pred HHHHHhccCCCcCcCCHHHHHHHHHHHHHHHhcCCCCHHHHHH--HHHHhcCCCCCcCCHHH
Confidence 348999999999876432 222222222221 33432221 11223667888888866
No 6
>d1xk4c1 a.39.1.2 (C:4-86) Calcyclin (S100) {Human (Homo sapiens), s100a9 (mrp14) [TaxId: 9606]}
Probab=4.67 E-value=70 Score=21.93 Aligned_cols=54 Identities=13% Similarity=0.231 Sum_probs=30.2
Q ss_pred cccCCCCCCCCCcccc----Cchhhhhhhhhhc--cChhHhhhcCcCCCCcccCCceEEeeh
Q psy13035 132 HHKFTDTDADPHNSRR----GFFFSHMGWLMVR--KHPDVKRRGATVDLSDLEKDWVVMFQK 187 (293)
Q Consensus 132 HH~~sDt~~DPHsp~r----Gf~~sH~GWll~~--~~p~~~~~~~~~d~~DL~~Dp~~~~q~ 187 (293)
=|+|+.+++|++.-.+ -+.-.-++-.+.+ +.|+..++ ....-|..+|-.+.|++
T Consensus 16 FhkYa~~~G~~~tLsk~Elk~Ll~~El~~~l~~~~~d~~~vd~--~m~~LD~n~Dg~vdF~E 75 (83)
T d1xk4c1 16 FHQYSVKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIEH--IMEDLDTNADKQLSFEE 75 (83)
T ss_dssp HHHHHTTSSSTTSBCHHHHHHHHHHHTTTTTTTGGGCHHHHHH--HHHHHCTTCSSSBCHHH
T ss_pred HHHHhCcCCCcccCCHHHHHHHHHHHhHHHhcCCCCCHHHHHH--HHHHhcCCCCCcCcHHH
Confidence 4899999999998753 3333333333322 23432211 11123556788888866
No 7
>d1ksoa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a3 [TaxId: 9606]}
Probab=4.44 E-value=76 Score=21.91 Aligned_cols=55 Identities=11% Similarity=-0.007 Sum_probs=28.1
Q ss_pred hcccCCCCCCCCCccccCchhhhhhhh----h-hccChhHhhhcCcCCCCcccCCceEEeeh
Q psy13035 131 VHHKFTDTDADPHNSRRGFFFSHMGWL----M-VRKHPDVKRRGATVDLSDLEKDWVVMFQK 187 (293)
Q Consensus 131 ~HH~~sDt~~DPHsp~rGf~~sH~GWl----l-~~~~p~~~~~~~~~d~~DL~~Dp~~~~q~ 187 (293)
.=|+|+|+++|.+.-.+.=+-.-+.=. + ....++..+ +.+..-|...|-.+.|++
T Consensus 14 vF~kya~~dGd~~~ls~~Elk~ll~~~~~~~~~~~~~~~~~~--~~~~~lD~n~Dg~IdF~E 73 (93)
T d1ksoa_ 14 TFQEYAGRCGDKYKLCQAELKELLQKELATWTPTEFRECDYN--KFMSVLDTNKDCEVDFVE 73 (93)
T ss_dssp HHHHHHTSSSCTTCEEHHHHHHHHHHHTTTCCCCTTCHHHHH--HHHHHHHHTTTCEECHHH
T ss_pred HHHHHcCcCCCCCeECHHHHHHHHHHhhhcccccCCCHHHHH--HHHHHHcCCCCCCCcHHH
Confidence 358999999999865322111111111 1 112222211 112234777899999876
No 8
>d1ss6a_ d.245.1.1 (A:) NSFL1 (p97 ATPase) cofactor p47, SEP domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.32 E-value=1.1e+02 Score=21.93 Aligned_cols=31 Identities=6% Similarity=0.055 Sum_probs=23.9
Q ss_pred cCCCCCCccchhhHHHhhhccccccccCCccc
Q psy13035 247 KFGQTMQTLSQSNTLELELSRQISQELGNVVC 278 (293)
Q Consensus 247 py~~~d~srnn~~~~~lt~GE~~~~~~~n~~~ 278 (293)
||..-|++.|.-++.-|.-|| +|.||.+...
T Consensus 29 plR~yddP~N~~FL~~I~~G~-~P~EL~~~~~ 59 (102)
T d1ss6a_ 29 ELRSYQDPSNAQFLESIRRGE-VPAELRRLAH 59 (102)
T ss_dssp CEEETTCTTTHHHHHHHHHTC-CCHHHHTTSC
T ss_pred CcccCCCHhHHHHHHHHHhcc-CCHHHhcccC
Confidence 444445799999999999998 8888876543
No 9
>d1flca2 c.23.10.2 (A:1-150,A:307-427) Esterase domain of haemagglutinin-esterase-fusion glycoprotein HEF1 {Influenza C virus [TaxId: 11552]}
Probab=4.22 E-value=1.2e+02 Score=25.15 Aligned_cols=23 Identities=9% Similarity=-0.042 Sum_probs=18.5
Q ss_pred hccccccccCCccccccCCCCcc
Q psy13035 265 LSRQISQELGNVVCLTPLHGFPA 287 (293)
Q Consensus 265 ~GE~~~~~~~n~~~~~~~~~~~~ 287 (293)
-|||---=+=+|+||||-|||--
T Consensus 104 tgeG~q~IFYEGVNFSP~~~fkC 126 (271)
T d1flca2 104 QGCGKHKVFYEGVNWSPHAAINC 126 (271)
T ss_dssp EEECSEEEECCCGGGSGGGCCCS
T ss_pred cCCceEEEEeccccCCCCcCcee
Confidence 47776666778999999999854
No 10
>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.96 E-value=86 Score=21.63 Aligned_cols=13 Identities=15% Similarity=0.271 Sum_probs=10.4
Q ss_pred cccCCccccccCC
Q psy13035 271 QELGNVVCLTPLH 283 (293)
Q Consensus 271 ~~~~n~~~~~~~~ 283 (293)
-+.+|..|.||||
T Consensus 126 ~~~~d~~g~Tpl~ 138 (153)
T d1awcb_ 126 VHTQSKFCKTAFD 138 (153)
T ss_dssp TTCCCTTSCCHHH
T ss_pred CcccCCCCCCHHH
Confidence 3567999999986
Done!