RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13035
         (293 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 37.0 bits (85), Expect = 0.008
 Identities = 63/398 (15%), Positives = 108/398 (27%), Gaps = 168/398 (42%)

Query: 2   APSLTPHFLSEAEV-----ISPSVYP---------IKSKPSPSPGIEPNESYSS------ 41
           A S  P  LS   +     +  + +           K  P P+ G   ++  ++      
Sbjct: 3   AYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG 62

Query: 42  ------------RHPYRWSIVWRNVL-AF--AYL-----HLGASYAVYLMFFN---QVQL 78
                           ++  V    L  F   YL     H   + A  L+  N    V+ 
Sbjct: 63  KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH---ALAAKLLQENDTTLVKT 119

Query: 79  KTIL---YR------------------EGVTAGAHRLWA------------------HRT 99
           K ++                         V  G  +L A                  ++T
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT 179

Query: 100 YSAKWPLRLILMLANSMAFQNHLYEWVRDHRVHHKFTDTDADPHNSRRGFFFSHMGWLMV 159
           Y       L+  L    A    L E +R           DA+   ++ G     + WL  
Sbjct: 180 YHV-----LVGDLIKFSA--ETLSELIRTT--------LDAEKVFTQ-GLNI--LEWL-- 219

Query: 160 RKHPDVKRRGATVDLSDLEKDWVVMFQKKYYLILMPICCFLIPPLIPWYFWSEKWTNAWY 219
            ++P         +  D +           YL+ +PI C    PLI              
Sbjct: 220 -ENPS--------NTPDKD-----------YLLSIPISC----PLI-------------G 242

Query: 220 VCALLRYTVSLH--GTWLVNSAAHIWGMRKFGQTMQT---LSQSNTLE--LELSRQI--- 269
           V  L  Y V+    G       +++ G     Q + T   ++++++ E      R+    
Sbjct: 243 VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV 302

Query: 270 -------SQELGNVVCLTPL---------HGFPAWYLA 291
                    E      L P           G P+  L+
Sbjct: 303 LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS 340


>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation,
           isoflavonoid, uridine diphosphate glycosyltransferase;
           2.10A {Medicago truncatula} SCOP: c.87.1.10
          Length = 482

 Score = 28.4 bits (64), Expect = 2.9
 Identities = 5/30 (16%), Positives = 16/30 (53%)

Query: 203 PLIPWYFWSEKWTNAWYVCALLRYTVSLHG 232
           P++ W F++++ T+  ++C      + +  
Sbjct: 393 PMLCWPFFADQPTDCRFICNEWEIGMEIDT 422


>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase,
           N-glucosyltransferase, UDP-glucose- dependent, plant
           glycosyltransferase; HET: UDP; 1.45A {Arabidopsis
           thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
          Length = 480

 Score = 27.2 bits (61), Expect = 8.0
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 203 PLIPWYFWSEKWTNAWYVC 221
           PLI W  ++E+  NA  + 
Sbjct: 379 PLIAWPLYAEQKMNAVLLS 397


>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis,
           glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP:
           c.87.1.10 PDB: 2c1z_A* 2c9z_A*
          Length = 456

 Score = 26.8 bits (60), Expect = 9.2
 Identities = 7/23 (30%), Positives = 11/23 (47%)

Query: 203 PLIPWYFWSEKWTNAWYVCALLR 225
           PLI   F+ ++  N   V  +L 
Sbjct: 365 PLICRPFFGDQRLNGRMVEDVLE 387


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.325    0.136    0.462 

Gapped
Lambda     K      H
   0.267   0.0536    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,661,485
Number of extensions: 266706
Number of successful extensions: 633
Number of sequences better than 10.0: 1
Number of HSP's gapped: 632
Number of HSP's successfully gapped: 14
Length of query: 293
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 200
Effective length of database: 4,105,140
Effective search space: 821028000
Effective search space used: 821028000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.2 bits)