RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13035
(293 letters)
>d1t9ba3 c.36.1.9 (A:461-687) Acetohydroxyacid synthase catalytic
subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 227
Score = 30.2 bits (67), Expect = 0.19
Identities = 27/172 (15%), Positives = 46/172 (26%), Gaps = 15/172 (8%)
Query: 89 AGAHRLWAHRTYSAKWPLRLILMLANSMAFQNHLYEWVRDHRVHHKFTDTDADPHNSRRG 148
G H++WA + ++ + P I D
Sbjct: 37 VGQHQMWAAQHWTWRNPHTFITSGGLGTMGYGLPAAIGAQVAKPESLV---IDIDGDASF 93
Query: 149 FFFSHMGWLMVRKHPDVKRRGATVDLSDLEKDWVVMFQKKYYLILMPICCFLIPPLIP-- 206
V+ VK + L++ E+ V +Q +Y L P I
Sbjct: 94 NMTLTELSSAVQAGTPVK----ILILNNEEQGMVTQWQSLFYEHRYSHTHQLNPDFIKLA 149
Query: 207 --WYFWSEKWTNAWYVCALLRYTVSLHGTWL----VNSAAHIWGMRKFGQTM 252
+ + A L+ VS G L V+ + M G +
Sbjct: 150 EAMGLKGLRVKKQEELDAKLKEFVSTKGPVLLEVEVDKKVPVLPMVAGGSGL 201
>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 158
Score = 29.8 bits (66), Expect = 0.20
Identities = 18/105 (17%), Positives = 32/105 (30%), Gaps = 4/105 (3%)
Query: 100 YSAKWPLRLILMLANSMAFQNHLYEWVRDHRVHHKFTDTDADPHNSRRGFFFSHMGWLMV 159
+ K+ L+L E + +F D + + FSH+ W+
Sbjct: 24 FKGKY---LVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINT 80
Query: 160 RKHPDVKRRGATVDLSDLEKDWVVMFQKKYYLILMPI-CCFLIPP 203
+ LSDL K + + + F+I P
Sbjct: 81 PRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDP 125
>d2djia3 c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus viridans
[TaxId: 1377]}
Length = 229
Score = 28.4 bits (62), Expect = 0.99
Identities = 6/75 (8%), Positives = 14/75 (18%), Gaps = 4/75 (5%)
Query: 89 AGAHRLWAHRTYSAKWPLRLILMLANSMAFQNHLYEWVRDHRVHHKFTDTDADPHNSRRG 148
G + R S F + + D
Sbjct: 26 VGNSTQTSIRHLHMTPKNMWR----TSPLFATMGIAIPGGLGAKNTYPDRQVWNIIGDGA 81
Query: 149 FFFSHMGWLMVRKHP 163
F ++ + ++
Sbjct: 82 FSMTYPDVVTNVRYN 96
>d2ez9a3 c.36.1.9 (A:366-593) Pyruvate oxidase {Lactobacillus
plantarum [TaxId: 1590]}
Length = 228
Score = 26.8 bits (58), Expect = 2.8
Identities = 8/75 (10%), Positives = 14/75 (18%), Gaps = 4/75 (5%)
Query: 89 AGAHRLWAHRTYSAKWPLRLILMLANSMAFQNHLYEWVRDHRVHHKFTDTDADPHNSRRG 148
G L A+R R I F + + G
Sbjct: 29 VGDINLNANRHLKLTPSNRHITS----NLFATMGVGIPGAIAAKLNYPERQVFNLAGDGG 84
Query: 149 FFFSHMGWLMVRKHP 163
+ ++
Sbjct: 85 ASMTMQDLATQVQYH 99
>d1ybha3 c.36.1.9 (A:460-667) Acetohydroxyacid synthase catalytic
subunit {Thale cress (Arabidopsis thaliana), chloroplast
[TaxId: 3702]}
Length = 208
Score = 26.3 bits (57), Expect = 3.8
Identities = 16/135 (11%), Positives = 27/135 (20%), Gaps = 5/135 (3%)
Query: 89 AGAHRLWAHRTYSAKWPLRLILMLANSMAFQNHLYEWVRD-HRVHHKFTDTDADPHNSRR 147
G H++WA + Y+ K P + + D D D
Sbjct: 26 VGQHQMWAAQFYNYKKPRQWLSSGGLGAMGFGLPAAIGASVANPDAIVVDIDGDGSF--- 82
Query: 148 GFFFSHMGWLMVRKHPDVKRRGATVDLSDLEKDWVVMFQKKYYLILMPICCFLIPPLIPW 207
+ ++ VK + W F K + P
Sbjct: 83 -IMNVQELATIRVENLPVKVLLLNNQHLGMVMQWEDRFYKANRAHTFLGDPAQEDEIFPN 141
Query: 208 YFWSEKWTNAWYVCA 222
Sbjct: 142 MLLFAAACGIPAARV 156
>d2ihta3 c.36.1.9 (A:375-572) Carboxyethylarginine synthase
{Streptomyces clavuligerus [TaxId: 1901]}
Length = 198
Score = 26.1 bits (56), Expect = 4.6
Identities = 17/151 (11%), Positives = 36/151 (23%), Gaps = 6/151 (3%)
Query: 89 AGAHRLWAHRTYSAKWPLRLILMLANSMAFQNHLYEWVRDHRVHHKFTDTDADPHNSRRG 148
G R + A P + S + Y D G
Sbjct: 36 IGFFRHYGVLFARADQPFGFL----TSAGCSSFGYGIPAAIGAQMARPDQPTFLIAGDGG 91
Query: 149 FFFSHMGWLMVRKHPDVKRRGATVDLS--DLEKDWVVMFQKKYYLILMPICCFLIPPLIP 206
F + + + + + +E + + + + +
Sbjct: 92 FHSNSSDLETIARLNLPIVTVVVNNDTNGLIELYQNIGHHRSHDPAVKFGGVDFVALAEA 151
Query: 207 WYFWSEKWTNAWYVCALLRYTVSLHGTWLVN 237
+ + TN + A LR L +L+
Sbjct: 152 NGVDATRATNREELLAALRKGAELGRPFLIE 182
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS)
{Escherichia coli [TaxId: 562]}
Length = 315
Score = 26.1 bits (56), Expect = 5.7
Identities = 15/98 (15%), Positives = 28/98 (28%), Gaps = 6/98 (6%)
Query: 84 REGVTAGAHRLWAHRTYSAKWPLRLILMLANSMAFQNHLYEWVRDHRVHHKFTDTDADPH 143
GA R H SA +L + ++ + +
Sbjct: 193 SWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVN 252
Query: 144 NSRRGFFFSHMGWLMVRKHPDVKRRGATVDLSDLEKDW 181
++ H G +MV + K G + D+ K +
Sbjct: 253 ------YWMHSGMVMVDREKMSKSLGNFFTVRDVLKYY 284
>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ),
soluble domain {Bacillus subtilis [TaxId: 1423]}
Length = 172
Score = 25.3 bits (54), Expect = 6.7
Identities = 9/75 (12%), Positives = 20/75 (26%), Gaps = 2/75 (2%)
Query: 169 GATVDLSDLEKDWVVMFQKKYYLILMPICCFLIPPLIPWYFWSEKWTNAWYVCALLRYTV 228
G V L L+ + + + IC + + + + +
Sbjct: 21 GKNVSLESLKGEVWLADF--IFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPE 78
Query: 229 SLHGTWLVNSAAHIW 243
+ L AA+
Sbjct: 79 NDKPKQLKKFAANYP 93
>d1yeya1 c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas
campestris pv. campestris [TaxId: 340]}
Length = 252
Score = 25.3 bits (54), Expect = 8.8
Identities = 5/25 (20%), Positives = 8/25 (32%)
Query: 32 GIEPNESYSSRHPYRWSIVWRNVLA 56
E + + + Y W LA
Sbjct: 228 SAEMHPASIAEFSYPDGRFWVEDLA 252
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.136 0.462
Gapped
Lambda K H
0.267 0.0621 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,175,173
Number of extensions: 54694
Number of successful extensions: 190
Number of sequences better than 10.0: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 24
Length of query: 293
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 208
Effective length of database: 1,240,546
Effective search space: 258033568
Effective search space used: 258033568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.0 bits)