Query psy13036
Match_columns 324
No_of_seqs 139 out of 1122
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 17:48:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13036.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13036hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1600|consensus 100.0 2E-101 5E-106 726.2 16.2 285 13-299 34-321 (321)
2 PLN02220 delta-9 acyl-lipid de 100.0 1.3E-88 2.8E-93 646.6 20.0 266 13-292 27-295 (299)
3 COG1398 OLE1 Fatty-acid desatu 100.0 1.3E-82 2.7E-87 588.5 13.8 265 19-292 20-288 (289)
4 cd03505 Delta9-FADS-like The D 100.0 6.8E-74 1.5E-78 509.6 14.1 174 45-282 2-178 (178)
5 PF00487 FA_desaturase: Fatty 99.6 2E-14 4.4E-19 128.5 12.1 71 52-122 9-80 (257)
6 cd01060 Membrane-FADS-like The 99.5 7.9E-14 1.7E-18 114.3 7.7 67 52-120 5-73 (122)
7 cd03506 Delta6-FADS-like The D 98.6 9E-08 2E-12 86.6 8.1 66 52-123 9-75 (204)
8 cd03513 CrtW_beta-carotene-ket 98.6 3E-06 6.4E-11 78.6 16.7 152 71-262 54-221 (225)
9 cd03511 Rhizopine-oxygenase-li 98.5 1.4E-06 3E-11 82.7 11.2 49 71-119 66-115 (285)
10 PLN02579 sphingolipid delta-4 98.3 8.9E-06 1.9E-10 79.3 12.7 61 60-121 86-148 (323)
11 cd03514 CrtR_beta-carotene-hyd 98.3 1.3E-05 2.9E-10 73.1 12.3 50 71-120 46-96 (207)
12 cd03512 Alkane-hydroxylase Alk 98.0 4.3E-05 9.3E-10 74.2 11.4 190 43-250 67-274 (314)
13 PLN03198 delta6-acyl-lipid des 98.0 0.00012 2.6E-09 75.8 15.1 61 49-115 242-303 (526)
14 PLN03199 delta6-acyl-lipid des 97.9 0.00038 8.3E-09 71.3 15.6 49 230-283 406-455 (485)
15 cd03510 Rhizobitoxine-FADS-lik 97.8 0.00018 3.8E-09 64.1 10.9 76 44-120 17-93 (175)
16 cd03509 DesA_FADS-like Fatty a 97.8 0.0002 4.3E-09 68.8 12.0 49 71-120 49-100 (288)
17 cd03507 Delta12-FADS-like The 97.8 0.0017 3.7E-08 59.8 16.5 59 60-119 45-104 (222)
18 COG3239 DesA Fatty acid desatu 97.7 0.00061 1.3E-08 66.9 12.4 56 58-119 79-134 (343)
19 cd03508 Delta4-sphingolipid-FA 97.4 0.0042 9.2E-08 59.7 14.3 59 60-120 57-118 (289)
20 PLN02598 omega-6 fatty acid de 97.3 0.007 1.5E-07 61.2 14.4 47 71-117 147-194 (421)
21 PLN02498 omega-3 fatty acid de 94.9 0.2 4.3E-06 51.2 10.3 48 71-118 172-220 (450)
22 PLN02505 omega-6 fatty acid de 94.4 0.18 3.9E-06 50.5 8.7 46 71-117 108-155 (381)
23 KOG4232|consensus 93.0 1.6 3.5E-05 44.2 12.4 48 230-282 355-403 (430)
24 COG5274 CYB5 Cytochrome b invo 90.2 0.052 1.1E-06 48.2 -1.3 38 227-266 4-41 (164)
25 PF10520 Kua-UEV1_localn: Kua- 57.8 36 0.00079 30.7 6.6 47 60-121 95-141 (178)
26 PLN02434 fatty acid hydroxylas 44.6 1.4E+02 0.0031 28.1 8.6 14 61-74 96-109 (237)
27 PF11947 DUF3464: Protein of u 43.7 51 0.0011 29.1 5.1 45 21-65 64-117 (153)
28 PLN02601 beta-carotene hydroxy 43.4 33 0.00071 33.2 4.1 20 55-74 143-162 (303)
29 cd03508 Delta4-sphingolipid-FA 37.9 16 0.00034 35.3 1.1 15 241-255 100-114 (289)
30 cd00547 QFR_TypeD_subunitD Qui 37.2 34 0.00074 28.8 2.9 41 63-112 44-84 (115)
31 PRK05470 fumarate reductase su 34.2 39 0.00084 28.6 2.7 46 63-117 48-94 (118)
32 COG3080 FrdD Fumarate reductas 31.1 18 0.00039 30.2 0.3 15 99-113 75-89 (118)
33 PF04116 FA_hydroxylase: Fatty 29.7 31 0.00068 27.1 1.5 13 96-109 22-34 (114)
34 PLN02601 beta-carotene hydroxy 28.8 1.8E+02 0.004 28.2 6.6 32 65-109 226-259 (303)
35 PF14756 Pdase_C33_assoc: Pept 27.5 45 0.00097 28.4 2.0 54 261-315 69-126 (147)
36 KOG0873|consensus 26.8 89 0.0019 30.3 4.2 46 211-260 204-250 (283)
37 KOG4232|consensus 26.1 55 0.0012 33.4 2.8 22 241-264 198-219 (430)
38 COG3000 ERG3 Sterol desaturase 23.6 1.4E+02 0.0029 28.3 4.8 17 239-255 203-221 (271)
39 KOG2987|consensus 22.3 2.7E+02 0.0059 27.0 6.4 70 43-114 64-138 (324)
40 KOG2987|consensus 22.1 29 0.00063 33.4 -0.1 22 231-252 247-269 (324)
41 PF09420 Nop16: Ribosome bioge 20.5 76 0.0016 27.8 2.3 25 261-285 39-63 (164)
42 COG4327 Predicted membrane pro 20.1 55 0.0012 26.7 1.2 14 90-103 55-68 (101)
No 1
>KOG1600|consensus
Probab=100.00 E-value=2.3e-101 Score=726.19 Aligned_cols=285 Identities=37% Similarity=0.660 Sum_probs=277.5
Q ss_pred cCCceeehhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhccccccCChHHHHHHHHHHHhh
Q psy13036 13 VKREIIWLKILFWIYLHCCAIYGLLLVFTQAKLMTTLYCFLLVMMSTLGNTIGAHRLWAHKTYTASWPLRLLLVTFQTLS 92 (324)
Q Consensus 13 ~~~~i~W~~~~~~~~lh~~al~~~~~~~~~~~~~~~~~~~~~~~~~~lgiT~G~HRl~sHrsfka~~~l~~~l~~~gt~a 92 (324)
.+++++|.+++.++.+|++|++|++..++..+|.|+++++++|.+++||||+||||+||||||||++|+|++||+|+++|
T Consensus 34 ~~~~~~w~nv~~~~~l~~~a~ygl~~~~~~~~w~t~~~~~~l~~v~glgITag~HRlwsHRSyKa~kpLr~fla~~~~~A 113 (321)
T KOG1600|consen 34 WKRELVWRNVVLFSALHIVALYGLLAPPFSAKWETLLFAFFLYAVGGLGITAGYHRLWSHRSYKAPKPLRYFLAYCNTLA 113 (321)
T ss_pred hhcchhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhceeeeehhhhcccccccCCccHHHHHHHHHHHh
Confidence 68999999999999999999999988878889999999999999999999999999999999999999999999999999
Q ss_pred ccCCchhhhhhhhhhhcCCCCCCCCCccccchHHHhhhccccCCChhhhhhccCCCcccccCCCeEEeehhhhhHHHHHH
Q psy13036 93 LTGPVYDWVLDHRLHHKYHGTDNDKYNFKRGFLWAHMGNRYHTRNPAADNLHTQVDMRDVEEDPIVMWQYRLYWAFAIIL 172 (324)
Q Consensus 93 ~qgs~~~Wv~~HR~HH~~sDt~~DPhsp~rGf~~sH~gWll~~~~~~~~~~~~~~d~~Dl~~dp~~~~q~r~y~~~~~~~ 172 (324)
+||+|++||++||.||||||||+|||||+||||||||||++++++|+++++++++|++||++||++|||+|+|.++.+++
T Consensus 114 ~Qg~~~~WvrdHR~HHk~tdTD~DPhn~~rGF~FsHvgWl~~~k~p~~k~~G~~~dvsDL~~dp~v~Fq~k~y~~l~~~~ 193 (321)
T KOG1600|consen 114 FQGDIIDWVRDHRVHHKFTDTDADPHNPRRGFWFSHVGWLLDKKHPQVKECGGRLDVSDLEADPVVRFQRKTYLLLMLFF 193 (321)
T ss_pred ccCChhHHHhhhhhhccccccCCCCCCcccchhhhhhhhHhccCChHHHhhcCcCChhHhhhCceeeehhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccccccccchhhHHHHHHHHHHHHHHhhhhhccceeeeccCCCCCCC--CCcchhhHhhhccC-CCCCcCCCC
Q psy13036 173 GVILPLNTPMEYWDESGVSTLFVVGFLRITLSLHMVWLINSANILWGLDPLDKR--SADTNLVFIVNKSL-WPQYHYLLP 249 (324)
Q Consensus 173 ~~~lP~~~~~~~~g~~~~~~~~~~~~~R~~l~~h~t~~VNS~~H~~G~r~y~~~--s~n~~~vallt~GE-wHNnHHafP 249 (324)
|+++|+++|+++||+++..+++.+ ++|.++++|+||+|||+||+||.||||++ |+||++++++|+|| ||||||+||
T Consensus 194 ~f~lp~~~p~~~~~~~~~~~~~~~-~~r~~~~lh~TwlVNSaaH~~G~rp~d~~~~s~nn~~~s~~t~GEgwHNyHH~Fp 272 (321)
T KOG1600|consen 194 CFLLPTLGPMYFWGEGMGLAFYVG-LFRYCIVLHATWLVNSAAHIWGSRPYDTNDTSRNNWWVSILTFGEGWHNYHHAFP 272 (321)
T ss_pred HHHHHHhCcceeeeecchhhhhHH-HHHHHHHHhhHHhhhhHHHHeecccCCCCCCcccceEEEEEEeccccccccccCc
Confidence 999999999999999988888877 99999999999999999999999999998 99999999999999 999999999
Q ss_pred cccccCCCCCcccChhHHHHHHHHHhccccccccCCHHHHHhhcccccCC
Q psy13036 250 FDYRSGEYGTYNEGCSTAFIRVFAALGWATELRTIDTNTIRECLPECVKF 299 (324)
Q Consensus 250 ~d~r~g~~~~~~~D~t~~~I~~l~~lGLa~~lk~~~~~~i~~~~~~~~~~ 299 (324)
+|||+|| .|||+|+|+.+|+++++||||+|+|+|++++|++++.+.+|+
T Consensus 273 ~dyr~ge-~~y~~d~T~~~I~~~a~lGlA~D~K~~s~~~i~~~~~~~g~~ 321 (321)
T KOG1600|consen 273 WDYRHGE-EWYQLDITWYLIDFFAALGLAYDLKTPSEAQIRRMALRRGDG 321 (321)
T ss_pred hhhHhhh-HHhhhCcchHHHHHHHHhhhHhhcCCchHHHHHHHHHhccCC
Confidence 9999997 699999999999999999999999999999999999888774
No 2
>PLN02220 delta-9 acyl-lipid desaturase
Probab=100.00 E-value=1.3e-88 Score=646.64 Aligned_cols=266 Identities=19% Similarity=0.278 Sum_probs=239.3
Q ss_pred cCCceeehhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhccccccCChHHHHHHHHHHHhh
Q psy13036 13 VKREIIWLKILFWIYLHCCAIYGLLLVFTQAKLMTTLYCFLLVMMSTLGNTIGAHRLWAHKTYTASWPLRLLLVTFQTLS 92 (324)
Q Consensus 13 ~~~~i~W~~~~~~~~lh~~al~~~~~~~~~~~~~~~~~~~~~~~~~~lgiT~G~HRl~sHrsfka~~~l~~~l~~~gt~a 92 (324)
+.++++|..++.++.+|++++++.+ .++|.++++++++|+++++|||+||||+||||||||++|+|++|+++|++|
T Consensus 27 ~~~~~~~~~~~~~~~~h~~~l~~~~----~~~w~~~~~~~~~~~it~lGiT~GyHRl~sHrsfka~~~l~~~la~~g~~a 102 (299)
T PLN02220 27 KWTRLDVVRASAVGTVHFLCLLAPF----NYKWEALRFGLILYIVTGLSITFSYHRNLAHRSFKLPKWLEYPFAYSALFA 102 (299)
T ss_pred ccceehhHHHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHH
Confidence 3467888898989999999997753 368999999999999999999999999999999999999999999999999
Q ss_pred ccCCchhhhhhhhhhhcCCCCCCCCCccccchHHHhhhccccCCChhhhhhccCCCcccccCCCeEEeehhhhhHHHHHH
Q psy13036 93 LTGPVYDWVLDHRLHHKYHGTDNDKYNFKRGFLWAHMGNRYHTRNPAADNLHTQVDMRDVEEDPIVMWQYRLYWAFAIIL 172 (324)
Q Consensus 93 ~qgs~~~Wv~~HR~HH~~sDt~~DPhsp~rGf~~sH~gWll~~~~~~~~~~~~~~d~~Dl~~dp~~~~q~r~y~~~~~~~ 172 (324)
+||||++||++||+||+|||||+|||||++|||||||||++.++++ .++..+++|++|+.+||+++||+|+|...++++
T Consensus 103 ~Qgs~~~Wv~~HR~HH~~sDt~~DPHsp~~Gfw~sH~gWl~~~~~~-~~~~~~~~~~~Dl~~d~~~~~~~~~~~~~~l~~ 181 (299)
T PLN02220 103 LQGDPIDWVSTHRFHHQFTDSDRDPHSPIEGFWFSHVLWIFDTSYI-REKCGGRDNVMDLKQQWFYRFLRKTIGLHILMF 181 (299)
T ss_pred hCCCHHHHHHHHHHHHHhcCCCCCccccccCcHHHHhHhhcCcchh-hhhcccccchHHHHhCcchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987653 334456788999999999999999887655544
Q ss_pred HHHhhhcccccccccchhhHHHHHHHHHHHHHHhhhhhccceeeeccCCCCCCC--CCcchhhHhhhccC-CCCCcCCCC
Q psy13036 173 GVILPLNTPMEYWDESGVSTLFVVGFLRITLSLHMVWLINSANILWGLDPLDKR--SADTNLVFIVNKSL-WPQYHYLLP 249 (324)
Q Consensus 173 ~~~lP~~~~~~~~g~~~~~~~~~~~~~R~~l~~h~t~~VNS~~H~~G~r~y~~~--s~n~~~vallt~GE-wHNnHHafP 249 (324)
++++ +++|+ +.+++|++++|+++++|+||+|||+||.||+|||+++ |+||+++|++|+|| ||||||+||
T Consensus 182 ~~~~------~~~gg--~~~~~wg~~~r~~~~~h~tw~VNS~~H~~G~rpy~~~d~srN~~~lallt~GEgwHNnHHafP 253 (299)
T PLN02220 182 WTLL------YLWGG--LPYLTWGVGVGGAIGYHVTWLINSACHIWGSRTWKTKDTSRNVWWLSLFTMGESWHNNHHAFE 253 (299)
T ss_pred HHHH------HHHhH--HHHHHHHHHHHHHHHHhhhhccchhhhcccCCCCCCCCCcchhHHHHHHhccccccccccCCc
Confidence 5443 34554 3567889999999999999999999999999999987 99999999999999 999999999
Q ss_pred cccccCCCCCcccChhHHHHHHHHHhccccccccCCHHHHHhh
Q psy13036 250 FDYRSGEYGTYNEGCSTAFIRVFAALGWATELRTIDTNTIREC 292 (324)
Q Consensus 250 ~d~r~g~~~~~~~D~t~~~I~~l~~lGLa~~lk~~~~~~i~~~ 292 (324)
+|||+| .+|||+||||++|++|++||||+|||+|+++.+++.
T Consensus 254 ~sar~G-~~w~~~D~t~~~I~~l~~lGLa~dlk~p~~~~~~~~ 295 (299)
T PLN02220 254 SSARQG-LEWWQIDITWYLIRFFEVLGLATDVKLPTEAQKRKM 295 (299)
T ss_pred cchhhC-CcCCCcCchHHHHHHHHHhCCcccccCCcHHHHHhH
Confidence 999999 799999999999999999999999999887766554
No 3
>COG1398 OLE1 Fatty-acid desaturase [Lipid metabolism]
Probab=100.00 E-value=1.3e-82 Score=588.46 Aligned_cols=265 Identities=26% Similarity=0.450 Sum_probs=237.1
Q ss_pred ehhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhccccccCChHHHHHHHHHHHhhccCCch
Q psy13036 19 WLKILFWIYLHCCAIYGLLLVFTQAKLMTTLYCFLLVMMSTLGNTIGAHRLWAHKTYTASWPLRLLLVTFQTLSLTGPVY 98 (324)
Q Consensus 19 W~~~~~~~~lh~~al~~~~~~~~~~~~~~~~~~~~~~~~~~lgiT~G~HRl~sHrsfka~~~l~~~l~~~gt~a~qgs~~ 98 (324)
|.++++++..++.++.+++.-+ ..-+..+++++++|.++++|||+|+|||+||||||+++++|++|+++|++++|||++
T Consensus 20 ~~~v~~f~~~~i~~~l~~~~~~-~~~~~~~i~~l~~y~~~~igIt~G~HRl~sHRa~~~~k~Le~~la~~g~l~~~G~~~ 98 (289)
T COG1398 20 WNNVLFFIGPLIVAYLAFYPDF-FSWLAELIFTLAYYLIGGIGITLGLHRLWSHRAFKAHKWLEYVLAFWGALTTQGPAI 98 (289)
T ss_pred HHHHHHHHHHHHHHHHhhcccc-hHHHHHHHHHHHHHHhccceeeeehhhhhhhhhcccchHHHHHHHHHHHhhcCCCce
Confidence 8888988888888876543211 123467888888899999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhcCCCCCCCC-CccccchHHHhhhccccCCChhhhhhccCCCcccccCCCeEEeehhhhhHHHHHHHHHhh
Q psy13036 99 DWVLDHRLHHKYHGTDNDK-YNFKRGFLWAHMGNRYHTRNPAADNLHTQVDMRDVEEDPIVMWQYRLYWAFAIILGVILP 177 (324)
Q Consensus 99 ~Wv~~HR~HH~~sDt~~DP-hsp~rGf~~sH~gWll~~~~~~~~~~~~~~d~~Dl~~dp~~~~q~r~y~~~~~~~~~~lP 177 (324)
+|+++||+||+|||||.|| |+.+|||||||+||++..+. +.....+..|+-+|+..+||+|++...+++.++++|
T Consensus 99 ~W~~~HR~HHr~tDTd~DPh~~~~kGfw~shigWm~~~~~----~~~~r~~~~~~~kd~~~~~~~r~~~~~~~l~~i~~~ 174 (289)
T COG1398 99 EWVGIHRKHHRKTDTDQDPHYDSFKGFWWSHIGWMLLYSA----EAKDRETIQKLGKDIPLDWQHRNLYLIALLMQIVLP 174 (289)
T ss_pred eHHHHHHHhhcccCCCCCCCccccccchhhhcceeeecch----hhcChhHHHHhCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 55579999999999998664 223334567999999999999999999999999999
Q ss_pred hcccccccccchhhHHHHHHHHHHHHHHhhhhhccceeeeccCCCCCCC--CCcchhhHhhhccC-CCCCcCCCCccccc
Q psy13036 178 LNTPMEYWDESGVSTLFVVGFLRITLSLHMVWLINSANILWGLDPLDKR--SADTNLVFIVNKSL-WPQYHYLLPFDYRS 254 (324)
Q Consensus 178 ~~~~~~~~g~~~~~~~~~~~~~R~~l~~h~t~~VNS~~H~~G~r~y~~~--s~n~~~vallt~GE-wHNnHHafP~d~r~ 254 (324)
++++ +++|+ +.+++|+++.|+++++|+||+|||+||.+||||||++ |||+|++|++|+|| |||||||||.|||+
T Consensus 175 l~~~-~~~gg--~~gl~~~gv~r~~~~~hat~~VNsl~H~~Gyr~fd~~d~arN~ww~al~t~GEgwHNnHHafp~~ar~ 251 (289)
T COG1398 175 LFIG-YALGG--WLGLIWGGVQRLVLVQHATWCVNSLGHYIGYRPFDCRDTARNCWWVALVTFGEGWHNNHHAFPNSARN 251 (289)
T ss_pred HHHH-HHhcc--hhHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCccceeEEEEeecccccccccccCcchhhc
Confidence 6555 45665 4569999999999999999999999999999999988 99999999999999 99999999999999
Q ss_pred CCCCCcccChhHHHHHHHHHhccccccccCCHHHHHhh
Q psy13036 255 GEYGTYNEGCSTAFIRVFAALGWATELRTIDTNTIREC 292 (324)
Q Consensus 255 g~~~~~~~D~t~~~I~~l~~lGLa~~lk~~~~~~i~~~ 292 (324)
| ++|||+|||||+|++++.||||+++|.+|+.+|+++
T Consensus 252 g-~kWwe~D~tw~~I~l~s~lGLA~~~k~~p~~~~~~~ 288 (289)
T COG1398 252 G-LKWWEFDVTWWIIKLLSLLGLAKVVKLAPKARIGEG 288 (289)
T ss_pred C-ceeEEeccHHHHHHHHHHHhHHHhcccCcHHHHhcc
Confidence 9 799999999999999999999999999999998875
No 4
>cd03505 Delta9-FADS-like The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide range of bacteria. These enzymes play essential roles in fatty acid metabolism and the regulation of cell membrane fluidity. Acyl-CoA desaturases are the enzymes involved in the CoA-bound desaturation of fatty acids. Mammalian stearoyl-CoA delta-9 desaturase is a key enzyme in the biosynthesis of monounsaturated fatty acids, and in yeast, the delta-9 acyl-CoA desaturase (OLE1) reaction accounts for all de nova unsaturated fatty acid production in Saccharomyces cerevisiae. These non-heme, iron-containing, ER membrane-bound enzymes are part of a three-component enzyme system involving cytochrome b5, cytochrome b5 reductase, and the delta-9 fatty acid desaturase. This complex catalyzes the NADH- and oxygen-dependent i
Probab=100.00 E-value=6.8e-74 Score=509.64 Aligned_cols=174 Identities=39% Similarity=0.682 Sum_probs=169.8
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhhhhccccccCChHHHHHHHHHHHhhccCCchhhhhhhhhhhcCCCCCCCCCccccch
Q psy13036 45 LMTTLYCFLLVMMSTLGNTIGAHRLWAHKTYTASWPLRLLLVTFQTLSLTGPVYDWVLDHRLHHKYHGTDNDKYNFKRGF 124 (324)
Q Consensus 45 ~~~~~~~~~~~~~~~lgiT~G~HRl~sHrsfka~~~l~~~l~~~gt~a~qgs~~~Wv~~HR~HH~~sDt~~DPhsp~rGf 124 (324)
|.++++++++|+++++|||+|||||||||||||++|+|++|+++|++|+||||++|+++||+||++||||+|||||+|||
T Consensus 2 ~~~~~~~~~~~~~~~lgit~G~HRl~aHrsfk~~~~l~~~l~~~g~~a~qgs~~~W~~~HR~HH~~sDt~~DPhs~~~gf 81 (178)
T cd03505 2 WATLVFLVLYYLLTGLGITAGYHRLWAHRSFKAPKPLRIFLAILGSLAGQGSPLWWVADHRLHHRYSDTDGDPHSPKRGF 81 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcCcHHHHHHHHHHHHHHcCcCHHHHHHHHHHhhcccCCCCCCCCcccCc
Confidence 56888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccccCCChhhhhhccCCCcccccCCCeEEeehhhhhHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHHH
Q psy13036 125 LWAHMGNRYHTRNPAADNLHTQVDMRDVEEDPIVMWQYRLYWAFAIILGVILPLNTPMEYWDESGVSTLFVVGFLRITLS 204 (324)
Q Consensus 125 ~~sH~gWll~~~~~~~~~~~~~~d~~Dl~~dp~~~~q~r~y~~~~~~~~~~lP~~~~~~~~g~~~~~~~~~~~~~R~~l~ 204 (324)
||||+||+ ++++|++++
T Consensus 82 ~~~h~gW~---------------------------------------------------------------~~~~r~~~~ 98 (178)
T cd03505 82 WFSHVGWL---------------------------------------------------------------GGLLRIVLV 98 (178)
T ss_pred HHHHHhhH---------------------------------------------------------------HHHHHHHHH
Confidence 99999999 578899999
Q ss_pred HhhhhhccceeeeccCCCCCCC--CCcchhhHhhhccC-CCCCcCCCCcccccCCCCCcccChhHHHHHHHHHhcccccc
Q psy13036 205 LHMVWLINSANILWGLDPLDKR--SADTNLVFIVNKSL-WPQYHYLLPFDYRSGEYGTYNEGCSTAFIRVFAALGWATEL 281 (324)
Q Consensus 205 ~h~t~~VNS~~H~~G~r~y~~~--s~n~~~vallt~GE-wHNnHHafP~d~r~g~~~~~~~D~t~~~I~~l~~lGLa~~l 281 (324)
+|+||+|||+||.+|+|||+++ |+|+++++++|+|| ||||||+||+|||+| ++|||+||||++||+|++||||+||
T Consensus 99 ~h~t~~VNs~~H~~G~r~~~~~~~s~n~~~~~llt~GEg~HNnHHafP~~ar~g-~~~~~~D~t~~~I~~l~~lGla~~l 177 (178)
T cd03505 99 LHATWLVNSLAHMWGYRPYDTRDTSRNNWWVALLTFGEGWHNNHHAFPGDARNG-LKWYQIDPTKWVIRLLEKLGLAWDL 177 (178)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCCchhhHHHHHHHccccccccccCCcchhhhC-CcCCCcCchHHHHHHHHHcCCcccC
Confidence 9999999999999999999987 99999999999999 999999999999999 7999999999999999999999999
Q ss_pred c
Q psy13036 282 R 282 (324)
Q Consensus 282 k 282 (324)
|
T Consensus 178 k 178 (178)
T cd03505 178 K 178 (178)
T ss_pred C
Confidence 6
No 5
>PF00487 FA_desaturase: Fatty acid desaturase This entry is only a subset of the Pfam family.; InterPro: IPR005804 Fatty acid desaturases are enzymes that catalyse the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: Bacterial fatty acid desaturases. Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 1. ; GO: 0006629 lipid metabolic process
Probab=99.57 E-value=2e-14 Score=128.54 Aligned_cols=71 Identities=25% Similarity=0.399 Sum_probs=62.4
Q ss_pred HHHHHHhhhhhhhhhhhhhccccccCChHHHHHHHHHHHhhccCCchhhhhhhhhhhcCCCCCC-CCCcccc
Q psy13036 52 FLLVMMSTLGNTIGAHRLWAHKTYTASWPLRLLLVTFQTLSLTGPVYDWVLDHRLHHKYHGTDN-DKYNFKR 122 (324)
Q Consensus 52 ~~~~~~~~lgiT~G~HRl~sHrsfka~~~l~~~l~~~gt~a~qgs~~~Wv~~HR~HH~~sDt~~-DPhsp~r 122 (324)
.++.....++.+.+.++-.+|+++..++++..++..+.++..++++..|...|++||+++++++ ||.+...
T Consensus 9 ~~~~~~~~~~~~~~~~H~~~H~~~~~~~~~n~~l~~~~~~~~~~~~~~wr~~H~~HH~~~~~~~~Dpd~~~~ 80 (257)
T PF00487_consen 9 ALLLLGLSFARLFGLAHDAGHGAFFRSRWLNDLLGRLLGLPIGGPYSSWRISHNRHHHYTNNPDRDPDSWTR 80 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcccChHHHHHHHHHHHHhcCCHhHhheeeeccccccCCccccCccchh
Confidence 3344556778888999999999999999999999888778888899999999999999999888 9999875
No 6
>cd01060 Membrane-FADS-like The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane hydroxylases, beta carotene ketolases (CrtW-like), hydroxylases (CrtR-like), and other related proteins. They are present in all groups of organisms with the exception of archaea. Membrane FADSs are non-heme, iron-containing, oxygen-dependent enzymes involved in regioselective introduction of double bonds in fatty acyl aliphatic chains. They play an important role in the maintenance of the proper structure and functioning of biological membranes. Alkane hydroxylases are bacterial, integral-membrane di-iron enzymes that share a requirement for iron and oxygen for activity similar to that of membrane FADSs, and are involved in the initial oxidation of inactivated alkanes. Beta-carotene ketolase and beta-carotene hydroxylase are carotenoid biosynthetic enzymes for astaxanthin and zeaxanthin, respectively. This superfamily domain has extensive hydrophobic regions that would
Probab=99.48 E-value=7.9e-14 Score=114.34 Aligned_cols=67 Identities=34% Similarity=0.531 Sum_probs=54.4
Q ss_pred HHHHHHhhhhhhhhhhhhhccccccC-ChHHHHHHHHHHHhhccCCchhhhhhhhhhhcCCCCC-CCCCcc
Q psy13036 52 FLLVMMSTLGNTIGAHRLWAHKTYTA-SWPLRLLLVTFQTLSLTGPVYDWVLDHRLHHKYHGTD-NDKYNF 120 (324)
Q Consensus 52 ~~~~~~~~lgiT~G~HRl~sHrsfka-~~~l~~~l~~~gt~a~qgs~~~Wv~~HR~HH~~sDt~-~DPhsp 120 (324)
+++.++.+++.+...|+. +|++|.. ++.-+++..+++. .+..++..|...|.+||++++++ +||.++
T Consensus 5 ~~~~~~~~~~~~~~~H~~-~H~~~~~~~~~n~~~~~~~~~-~~~~~~~~~~~~H~~HH~~~~~~~~D~~~~ 73 (122)
T cd01060 5 LLLGLLGGLGLTVLAHEL-GHRSFFRSRWLNRLLGALLGL-ALGGSYGWWRRSHRRHHRYTNTPGKDPDSA 73 (122)
T ss_pred HHHHHHHHHHHHHHHHHH-hhhhhhccccHHHHHHHHHHH-HHcCCHHHHHHHHHHHhcCcCCCCCCCccc
Confidence 334444555899999999 9999995 4555666666665 78889999999999999999988 999999
No 7
>cd03506 Delta6-FADS-like The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria. These desaturases are required for the synthesis of highly unsaturated fatty acids (HUFAs), which are mainly esterified into phospholipids and contribute to maintaining membrane fluidity. While HUFAs may be required for cold tolerance in bacteria, plants and fish, the primary role of HUFAs in mammals is cell signaling. These enzymes are described as front-end desaturases because they introduce a double bond between the pre-exiting double bond and the carboxyl (front) end of the fatty acid. Various substrates are involved, with both acyl-coenzyme A (CoA) and acyl-lipid desaturases present in this CD. Acyl-lipid desaturases are localized in the membranes of cyanobacterial thylakoid, plant endoplasmic reticulum (ER), and plastid; an
Probab=98.64 E-value=9e-08 Score=86.61 Aligned_cols=66 Identities=20% Similarity=0.119 Sum_probs=52.7
Q ss_pred HHHHHHhhhhhhhhhhhhhccccccCChHHHHHHHHHHHhhccCCchhhhhhhhhhhcCCCC-CCCCCccccc
Q psy13036 52 FLLVMMSTLGNTIGAHRLWAHKTYTASWPLRLLLVTFQTLSLTGPVYDWVLDHRLHHKYHGT-DNDKYNFKRG 123 (324)
Q Consensus 52 ~~~~~~~~lgiT~G~HRl~sHrsfka~~~l~~~l~~~gt~a~qgs~~~Wv~~HR~HH~~sDt-~~DPhsp~rG 123 (324)
++......++..++ |+++..++++..++..+......+|..+|-..|..||+++++ +.||--....
T Consensus 9 ~~~~~~~~~~Hd~~------H~~~~~~~~~n~~~g~~~~~~~g~s~~~w~~~H~~HH~~tn~~~~Dpd~~~~~ 75 (204)
T cd03506 9 LFWAQGGFLAHDAG------HGQVFKNRWLNKLLGLTVGNLLGASAGWWKNKHNVHHAYTNILGHDPDIDTLP 75 (204)
T ss_pred HHHHHHHHHHHhcc------CccccCCchHHHHHHHHHHhccCCCHHHHHHHHhhhcCcCCCCCCCCCCCcCc
Confidence 33334456677776 999999999999988777777778999999999999999995 5999876544
No 8
>cd03513 CrtW_beta-carotene-ketolase Beta-carotene ketolase/oxygenase (CrtW, also known as CrtO), the carotenoid astaxanthin biosynthetic enzyme, initially catalyzes the addition of two keto groups to carbons C4 and C4' of beta-carotene. Carotenoids are important natural pigments produced by many microorganisms and plants. Astaxanthin is reported to be an antioxidant, an anti-cancer agent, and an immune system stimulant. A number of bacteria and green algae can convert beta-carotene into astaxanthin by using several ketocarotenoids as intermediates and CrtW and a beta-carotene hydroxylase (CrtZ). CrtW initially converts beta-carotene to canthaxanthin via echinenone, and CrtZ initially mediates the conversion of beta-carotene to zeaxanthin via beta-cryptoxanthin. After a few more intermediates are formed, CrtW and CrtZ act in combination to produce astaxanthin. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. Th
Probab=98.59 E-value=3e-06 Score=78.64 Aligned_cols=152 Identities=18% Similarity=0.115 Sum_probs=79.6
Q ss_pred cccccc-CChHHHHHHHHH-HHhhccCCchhhhhhhhhhhcCCCCCCCCCcc--c-cchHHHhhhccccCCChhhhhhcc
Q psy13036 71 AHKTYT-ASWPLRLLLVTF-QTLSLTGPVYDWVLDHRLHHKYHGTDNDKYNF--K-RGFLWAHMGNRYHTRNPAADNLHT 145 (324)
Q Consensus 71 sHrsfk-a~~~l~~~l~~~-gt~a~qgs~~~Wv~~HR~HH~~sDt~~DPhsp--~-rGf~~sH~gWll~~~~~~~~~~~~ 145 (324)
+|+++- -++.+...+..+ +.+-.-.|-..|-+.|..||+++.+++||=-. + .+++ -|..
T Consensus 54 ~Hg~~~~~~~~~N~~iG~~~~~l~~g~~~~~~~~~H~~HH~~~~~~~DpD~~~~~~~~~~----~wy~------------ 117 (225)
T cd03513 54 MHGSLAPGNPRLNRAIGRLCLFLYAGFSYDRLLRKHHLHHRHPGTAKDPDFHKGNPSGFL----PWYL------------ 117 (225)
T ss_pred hhhccccCCchHHHHHHHHHHHHhhcCCHHHHHHHHHHHcCCCCCCCCCCCCCCCCCChH----HHHH------------
Confidence 366663 456666555533 23433348888999999999999988887432 2 1221 1111
Q ss_pred CCCcccccCCCeEEeehhhhhHHHH-HHHHHhhhcccccccccchhhH-HHHHHHHHHHHHHhhhhh-ccceeeeccCCC
Q psy13036 146 QVDMRDVEEDPIVMWQYRLYWAFAI-ILGVILPLNTPMEYWDESGVST-LFVVGFLRITLSLHMVWL-INSANILWGLDP 222 (324)
Q Consensus 146 ~~d~~Dl~~dp~~~~q~r~y~~~~~-~~~~~lP~~~~~~~~g~~~~~~-~~~~~~~R~~l~~h~t~~-VNS~~H~~G~r~ 222 (324)
.|+.+|+.+.++ .+.++.++... ..+.+.... ++|..-. ++...+...+ .| +.|.-+.+|
T Consensus 118 -------------~f~~~y~~~~qli~l~ivw~~~l~--~~~~~~~~~~~~~~~P~-l~~~~~l~~f~T~-lpH~~~~~~ 180 (225)
T cd03513 118 -------------HFMSNYFGWRQLAILAAVWLLLLG--LGSAPLANLLLFWALPL-ILSSLQLFYFGTW-LPHRPGRGG 180 (225)
T ss_pred -------------HHHHhHhHHHHHHHHHHHHHHHHH--HHcccHHHHHHHHHHHH-HHHHHHHHHHHhh-cCCCCCCCC
Confidence 122233222222 11222221111 111111111 1121111 1122222222 33 899999889
Q ss_pred CCCC--CCc---chhhHhhh---ccCCCCCcCCCCcccccCCCCCccc
Q psy13036 223 LDKR--SAD---TNLVFIVN---KSLWPQYHYLLPFDYRSGEYGTYNE 262 (324)
Q Consensus 223 y~~~--s~n---~~~vallt---~GEwHNnHHafP~d~r~g~~~~~~~ 262 (324)
++.. |++ +.+++++| +| +|+-||.||+ .-||++
T Consensus 181 ~~~~~~a~~~~~~~~~~~l~c~~fg-yH~eHH~fP~------~Pw~~L 221 (225)
T cd03513 181 FADRHRARSSRLSPVLSFLTCYHFG-YHHEHHLSPS------TPWWRL 221 (225)
T ss_pred CCCcccceecCccHHHHHHHHHhcC-cchhhccCCC------CCcccC
Confidence 8753 554 67899998 67 9999999995 357764
No 9
>cd03511 Rhizopine-oxygenase-like This CD includes the putative hydrocarbon oxygenase, MocD, a bacterial rhizopine (3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and other related proteins. It has been proposed that MocD, MocE (Rieske-like ferredoxin), and MocF (ferredoxin reductase) under the regulation of MocR, act in concert to form a ferredoxin oxygenase system that demethylates 3-O-MSI to form scyllo-inosamine. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA d
Probab=98.46 E-value=1.4e-06 Score=82.66 Aligned_cols=49 Identities=22% Similarity=0.142 Sum_probs=40.7
Q ss_pred ccccccCChHHHHHHHHHHHhhccCCchhhhhhhhhhhcCCC-CCCCCCc
Q psy13036 71 AHKTYTASWPLRLLLVTFQTLSLTGPVYDWVLDHRLHHKYHG-TDNDKYN 119 (324)
Q Consensus 71 sHrsfka~~~l~~~l~~~gt~a~qgs~~~Wv~~HR~HH~~sD-t~~DPhs 119 (324)
+|+++..++++..++..+.++....|...|...|..||+++. +++||-.
T Consensus 66 ~H~~~~~~~~~N~~~g~l~~~~~~~~~~~~~~~H~~HH~~~~~~~~Dpd~ 115 (285)
T cd03511 66 VHGTAFATRWLNDAVGQIAGLMILLPPDFFRWSHARHHRYTQIPGRDPEL 115 (285)
T ss_pred hcccccCCchHHHHHHHHHHHHhcCChHHHHHHHHHHhcCcCCCCCCCCC
Confidence 599988899999888776666666788899999999999994 6788854
No 10
>PLN02579 sphingolipid delta-4 desaturase
Probab=98.30 E-value=8.9e-06 Score=79.26 Aligned_cols=61 Identities=16% Similarity=0.062 Sum_probs=42.0
Q ss_pred hhhhhhhhhhhccccccCChHHHHHHHHHHHh-hccCCchhhhhhhhhhhcCCC-CCCCCCccc
Q psy13036 60 LGNTIGAHRLWAHKTYTASWPLRLLLVTFQTL-SLTGPVYDWVLDHRLHHKYHG-TDNDKYNFK 121 (324)
Q Consensus 60 lgiT~G~HRl~sHrsfka~~~l~~~l~~~gt~-a~qgs~~~Wv~~HR~HH~~sD-t~~DPhsp~ 121 (324)
.++.+..|= .+|+++-.++++-.++..+..+ .|.....+|-+.|..||+++. .+.||--|.
T Consensus 86 ~~lf~~~HD-~~Hg~~f~~~~~N~~lg~~~~l~~g~~~~~~~~~~H~~HH~~~n~~~~D~Di~t 148 (323)
T PLN02579 86 HNLFLAIHE-LSHNLAFKTPVYNRWLGIFANLPIGIPMSVTFQKYHLEHHRFQGVDGIDMDIPS 148 (323)
T ss_pred HHHHHHHHH-hhHhhhcCCHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHccCCCCCCCCCCCCc
Confidence 334444553 3588887788888888776544 444345579999999999997 455877764
No 11
>cd03514 CrtR_beta-carotene-hydroxylase Beta-carotene hydroxylase (CrtR), the carotenoid zeaxanthin biosynthetic enzyme catalyzes the addition of hydroxyl groups to the beta-ionone rings of beta-carotene to form zeaxanthin and is found in bacteria and red algae. Carotenoids are important natural pigments; zeaxanthin and lutein are the only dietary carotenoids that accumulate in the macular region of the retina and lens. It is proposed that these carotenoids protect ocular tissues against photooxidative damage. CrtR does not show overall amino acid sequence similarity to the beta-carotene hydroxylases similar to CrtZ, an astaxanthin biosynthetic beta-carotene hydroxylase. However, CrtR does show sequence similarity to the green alga, Haematococcus pluvialis, beta-carotene ketolase (CrtW), which converts beta-carotene to canthaxanthin. Sequences of the CrtR_beta-carotene-hydroxylase domain family, as well as, the CrtW_beta-carotene-ketolase domain family appear to be structurally related
Probab=98.26 E-value=1.3e-05 Score=73.14 Aligned_cols=50 Identities=20% Similarity=0.170 Sum_probs=38.3
Q ss_pred ccccccCChHHHHHHHHHHHhhccCCchhhhhhhhhhhcCCCCC-CCCCcc
Q psy13036 71 AHKTYTASWPLRLLLVTFQTLSLTGPVYDWVLDHRLHHKYHGTD-NDKYNF 120 (324)
Q Consensus 71 sHrsfka~~~l~~~l~~~gt~a~qgs~~~Wv~~HR~HH~~sDt~-~DPhsp 120 (324)
+|+++.-++++-.++..+.++..-.|...|-..|..||+++.++ +||-..
T Consensus 46 ~H~~~~~~~~~N~~~g~~~~~~~~~~~~~w~~~H~~HH~~~~~~~~DpD~~ 96 (207)
T cd03514 46 SHKAASRNRWINELIGHVSAFFLGFPFPVFRRVHMQHHAHTNDPEKDPDHF 96 (207)
T ss_pred ccccccCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCcCcCCcCccHH
Confidence 48888778887777765544544458889999999999999975 888544
No 12
>cd03512 Alkane-hydroxylase Alkane hydroxylase is a bacterial, integral-membrane di-iron enzyme that shares a requirement for iron and oxygen for activity similar to that of the non-heme integral-membrane acyl coenzyme A (CoA) desaturases and acyl lipid desaturases. The alk genes in Pseudomonas oleovorans encode conversion of alkanes to acyl CoA. The alkane omega-hydroxylase (AlkB) system is responsible for the initial oxidation of inactivated alkanes. It is a three-component system comprising a soluble NADH-rubredoxin reductase (AlkT), a soluble rubredoxin (AlkG), and the integral membrane oxygenase (AlkB). AlkB utilizes the oxygen rebound mechanism to hydroxylate alkanes. This mechanism involves homolytic cleavage of the C-H bond by an electrophilic metal-oxo intermediate to generate a substrate-based radical. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. The active
Probab=98.04 E-value=4.3e-05 Score=74.17 Aligned_cols=190 Identities=17% Similarity=0.090 Sum_probs=87.0
Q ss_pred hhhhH-HHHHHHHHHHh-hhhhhhhhhhhhccccccCChHHHHHHHHHHHhhccCCchhhhhhhhhhhcCCCCCCCCCcc
Q psy13036 43 AKLMT-TLYCFLLVMMS-TLGNTIGAHRLWAHKTYTASWPLRLLLVTFQTLSLTGPVYDWVLDHRLHHKYHGTDNDKYNF 120 (324)
Q Consensus 43 ~~~~~-~~~~~~~~~~~-~lgiT~G~HRl~sHrsfka~~~l~~~l~~~gt~a~qgs~~~Wv~~HR~HH~~sDt~~DPhsp 120 (324)
.+|.. +.+++.+-++. ++|+.+ .|-+ .||+-+.++.+-.++. ... |..-+....+|.||+++.|++||=++
T Consensus 67 ~~~~~~~~~~~~~G~~~g~i~~~~-aHel-~Hr~~~lnr~lg~~~~---~~~--~~~~~~~~H~~~HH~~v~tp~DP~ta 139 (314)
T cd03512 67 LSALEKVGLILSLGLLSGVIGINT-AHEL-IHRRSRLERWLGKLLL---ASL--LYGHFAIEHVRGHHRYVATPEDPATA 139 (314)
T ss_pred CcHHHHHHHHHHHHHHHHHhhHHH-HHhc-cCCCChHHHHHHHHHH---HHh--cccceeeeecccCCCCCCCCCCcccc
Confidence 44433 33343343343 366665 4543 4665444444333322 222 23334444456899999999999999
Q ss_pred ccch-HHHhhhccccCCChhhhhhccCCCccccc--CCCeEEeehhhhhHHHHHHHHHhhhcccccccccchhhHHHHHH
Q psy13036 121 KRGF-LWAHMGNRYHTRNPAADNLHTQVDMRDVE--EDPIVMWQYRLYWAFAIILGVILPLNTPMEYWDESGVSTLFVVG 197 (324)
Q Consensus 121 ~rGf-~~sH~gWll~~~~~~~~~~~~~~d~~Dl~--~dp~~~~q~r~y~~~~~~~~~~lP~~~~~~~~g~~~~~~~~~~~ 197 (324)
.+|= +|+..--.+.....+.-+. +.+.+. .-|.....++....+ ++.+++.+++ +.+++ +.++.+ .
T Consensus 140 r~ge~~y~f~~r~~~g~~~~aw~~----e~~rl~~~g~~~~~~~n~~l~~~--~~~~a~~~~~--~~~~g--~~~l~~-~ 208 (314)
T cd03512 140 RRGESFYRFLPRALVGSFRSAWKL----EKKRLRRKGRSPWSPRNEVLRYL--ALAVALLALA--AALGG--LAGLLF-L 208 (314)
T ss_pred ccCccHHHHHHHHHHHHHHHHHHH----HHHHHHhcCCCCCccchHHHHHH--HHHHHHHHHH--HHHHH--HHHHHH-H
Confidence 7554 4443211111110110000 001111 123333343322221 1111111111 11221 112211 1
Q ss_pred HHHHHHHHhhhhhccceeeeccCC------CCC---CC-CCc--chhhHhhhccC-CCCCcCCCCc
Q psy13036 198 FLRITLSLHMVWLINSANILWGLD------PLD---KR-SAD--TNLVFIVNKSL-WPQYHYLLPF 250 (324)
Q Consensus 198 ~~R~~l~~h~t~~VNS~~H~~G~r------~y~---~~-s~n--~~~vallt~GE-wHNnHHafP~ 250 (324)
++-.++.+-..-++|.+-|.==.| .|+ .+ |-| +....++++-= .|-.||++|.
T Consensus 209 l~~~~~g~~~l~~~nY~EHyGL~r~~~~~gr~e~~~~~hSWNs~~~~~n~l~~nl~rHsdHH~~p~ 274 (314)
T cd03512 209 LIQAFYAKSLLELVNYIEHYGLLRKKLANGRYEPVGPRHSWNSNHIVSNLLLFNLQRHSDHHAHPT 274 (314)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccccCCCCccccCCCccCcCcCcHHHHHHHHhcchhhhhccCCC
Confidence 222344444456789998862111 133 12 444 67888888887 9999999995
No 13
>PLN03198 delta6-acyl-lipid desaturase; Provisional
Probab=98.03 E-value=0.00012 Score=75.80 Aligned_cols=61 Identities=15% Similarity=0.089 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhccccccCChHHHHHHHHH-HHhhccCCchhhhhhhhhhhcCCCCCC
Q psy13036 49 LYCFLLVMMSTLGNTIGAHRLWAHKTYTASWPLRLLLVTF-QTLSLTGPVYDWVLDHRLHHKYHGTDN 115 (324)
Q Consensus 49 ~~~~~~~~~~~lgiT~G~HRl~sHrsfka~~~l~~~l~~~-gt~a~qgs~~~Wv~~HR~HH~~sDt~~ 115 (324)
+++++...++.++..+| |.++..++++..++..+ +.+..-.|+.+|-..|..||+++...+
T Consensus 242 llgl~~~q~g~l~HD~~------H~s~~~~~~~n~~~g~~~~~~~~G~s~~~W~~~Hn~HH~~tN~~~ 303 (526)
T PLN03198 242 MMALCFQQCGWLSHDFL------HNQVFETRWLNEVVGYLIGNAVLGFSTGWWKEKHNLHHAAPNECD 303 (526)
T ss_pred HHHHHHHHHHHHHHhcc------cccccCCcHHHHHHHHHHHHhhcCCCHHHHHHHHHHhccCCCCCC
Confidence 33333333455666666 88888888877776644 556656789999999999999999764
No 14
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=97.88 E-value=0.00038 Score=71.33 Aligned_cols=49 Identities=16% Similarity=0.137 Sum_probs=39.4
Q ss_pred chhhHhhhccC-CCCCcCCCCcccccCCCCCcccChhHHHHHHHHHhcccccccc
Q psy13036 230 TNLVFIVNKSL-WPQYHYLLPFDYRSGEYGTYNEGCSTAFIRVFAALGWATELRT 283 (324)
Q Consensus 230 ~~~vallt~GE-wHNnHHafP~d~r~g~~~~~~~D~t~~~I~~l~~lGLa~~lk~ 283 (324)
++++..++.|= +|==||-||+-.|.- + -.+...+-.+|++-|+-+....
T Consensus 406 s~~~~wf~GGLN~QIEHHLFP~mp~~~-y----~~i~piVk~~C~k~glpY~~~~ 455 (485)
T PLN03199 406 QAFVDWFCGGLQYQVDHHLFPMLPRHN-I----AKCHALVESFCKEWGVKYHEAD 455 (485)
T ss_pred chHHHHHhccchhhhhhhcCCCCchhh-H----HhhhHHHHHHHHHhCCCccccC
Confidence 46889998777 999999999866654 2 3467889999999999988654
No 15
>cd03510 Rhizobitoxine-FADS-like This CD includes the dihydrorhizobitoxine fatty acid desaturase (RtxC) characterized in Bradyrhizobium japonicum USDA110, and other related proteins. Dihydrorhizobitoxine desaturase is reported to be involved in the final step of rhizobitoxine biosynthesis. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXX(X)HH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=97.84 E-value=0.00018 Score=64.12 Aligned_cols=76 Identities=20% Similarity=0.166 Sum_probs=47.9
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhhhhhhccccccCChHHHHHHH-HHHHhhccCCchhhhhhhhhhhcCCCCCCCCCcc
Q psy13036 44 KLMTTLYCFLLVMMSTLGNTIGAHRLWAHKTYTASWPLRLLLV-TFQTLSLTGPVYDWVLDHRLHHKYHGTDNDKYNF 120 (324)
Q Consensus 44 ~~~~~~~~~~~~~~~~lgiT~G~HRl~sHrsfka~~~l~~~l~-~~gt~a~qgs~~~Wv~~HR~HH~~sDt~~DPhsp 120 (324)
+|....+++++....+.|..+-.|= .+|+++--++.+..++. ++.+...-.+...|-..|..||+++.+++||--.
T Consensus 17 ~~~~~~l~~~~~g~~~~~l~~l~He-a~H~~l~~~~~~N~~~g~~~~~~p~~~~~~~~r~~H~~HH~~~~~~~Dpd~~ 93 (175)
T cd03510 17 NWLAYLLAVLLIGARQRALAILMHD-AAHGLLFRNRRLNDFLGNWLAAVPIFQSLAAYRRSHLKHHRHLGTEDDPDLA 93 (175)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcccccccHHHHHHHHHHHhhhhCCHHHHHHHHHHHhCccCCCCCCcHH
Confidence 3433333333333333444444442 34788777888877775 3433433447789999999999999999998765
No 16
>cd03509 DesA_FADS-like Fatty acid desaturase protein family subgroup, a delta-12 acyl-lipid desaturase-like, DesA-like, yet uncharacterized subgroup of membrane fatty acid desaturase proteins found in alpha-, beta-, and gamma-proteobacteria. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of these sequences also reveals three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=97.84 E-value=0.0002 Score=68.77 Aligned_cols=49 Identities=22% Similarity=0.079 Sum_probs=36.8
Q ss_pred ccccccCChHHHHHHHHHHHhhccCCchhhhhhhhhhhcCCC---CCCCCCcc
Q psy13036 71 AHKTYTASWPLRLLLVTFQTLSLTGPVYDWVLDHRLHHKYHG---TDNDKYNF 120 (324)
Q Consensus 71 sHrsfka~~~l~~~l~~~gt~a~qgs~~~Wv~~HR~HH~~sD---t~~DPhsp 120 (324)
+|+++--++++--++..+. +..--|...|-..|-.||++++ .|.||-+.
T Consensus 49 ~Hg~~~~~~~~N~~~g~~~-~~l~~p~~~wr~~H~~HH~~~nl~~~~~Dpd~~ 100 (288)
T cd03509 49 LHGHPTRSRWVNEALGYPP-LALWYPYTRYRDTHLAHHRDEDLTDPGDDPESN 100 (288)
T ss_pred hccCcccChHHHHHHHHHH-HHHhcCHHHHHHHHHHHcCCCCCCCCCCCCccc
Confidence 5999998999888876552 2222466799999999999985 35788765
No 17
>cd03507 Delta12-FADS-like The Delta12 Fatty Acid Desaturase (Delta12-FADS)-like CD includes the integral-membrane enzymes, delta-12 acyl-lipid desaturases, oleate 12-hydroxylases, omega3 and omega6 fatty acid desaturases, and other related proteins, found in a wide range of organisms including higher plants, green algae, diatoms, nematodes, fungi, and bacteria. The expression of these proteins appears to be temperature dependent: decreases in temperature result in increased levels of fatty acid desaturation within membrane lipids subsequently altering cell membrane fluidity. An important enzyme for the production of polyunsaturates in plants is the oleate delta-12 desaturase (Arabidopsis FAD2) of the endoplasmic reticulum. This enzyme accepts l-acyl-2-oleoyl-sn-glycero-3-phosphocholine as substrate and requires NADH:cytochrome b oxidoreductase, cytochrome b, and oxygen for activity. FAD2 converts oleate(18:1) to linoleate (18:2) and is closely related to oleate 12-hydroxylase which cat
Probab=97.76 E-value=0.0017 Score=59.84 Aligned_cols=59 Identities=20% Similarity=0.330 Sum_probs=43.0
Q ss_pred hhhhhhhhhhhccccccCChHHHHHHHHHHHhhccCCchhhhhhhhhhhcCCCC-CCCCCc
Q psy13036 60 LGNTIGAHRLWAHKTYTASWPLRLLLVTFQTLSLTGPVYDWVLDHRLHHKYHGT-DNDKYN 119 (324)
Q Consensus 60 lgiT~G~HRl~sHrsfka~~~l~~~l~~~gt~a~qgs~~~Wv~~HR~HH~~sDt-~~DPhs 119 (324)
.|.-+-.|=. .|+++-.++.+..++..+.......|...|...|.+||+++.+ ++||--
T Consensus 45 ~~l~~l~He~-~H~~~~~~~~~N~~~g~~~~~~~~~p~~~w~~~H~~HH~~~~~~~~D~~~ 104 (222)
T cd03507 45 TGLFVLGHDC-GHGSFSDNRRLNDIVGHILHSPLLVPYHSWRISHNRHHAHTGNLEGDEVW 104 (222)
T ss_pred HHHHHHhhcc-CCcccccchhHHHHHHHHHHHHHhCChHHHHHHHHHHHhccCCCCCCCcc
Confidence 3444445554 7999988888887777544344446889999999999999885 777644
No 18
>COG3239 DesA Fatty acid desaturase [Lipid metabolism]
Probab=97.66 E-value=0.00061 Score=66.94 Aligned_cols=56 Identities=20% Similarity=0.312 Sum_probs=44.9
Q ss_pred hhhhhhhhhhhhhccccccCChHHHHHHHHHHHhhccCCchhhhhhhhhhhcCCCCCCCCCc
Q psy13036 58 STLGNTIGAHRLWAHKTYTASWPLRLLLVTFQTLSLTGPVYDWVLDHRLHHKYHGTDNDKYN 119 (324)
Q Consensus 58 ~~lgiT~G~HRl~sHrsfka~~~l~~~l~~~gt~a~qgs~~~Wv~~HR~HH~~sDt~~DPhs 119 (324)
..+|..+| |+||.-++++--++.-+.+...-.++..|=..|..||++|.+++||.+
T Consensus 79 ~~v~Hd~~------Hgs~~~~r~iNd~ig~l~~~~~~~p~~~wR~~H~~HH~~t~~~~~d~~ 134 (343)
T COG3239 79 FSVGHDCG------HGSFFKNRWINDLIGHLAAALLLAPPVFWRISHNQHHAHTNILDDDPE 134 (343)
T ss_pred Hhhhhhcc------ccchhhhhhHHHHHHHHHHHHHhcChhhhhhhHHHhhcccCCCCCCHH
Confidence 34566665 999998999888877665555557899999999999999999888843
No 19
>cd03508 Delta4-sphingolipid-FADS-like The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase (MLD), reported to modulate biosynthesis of the epidermal growth factor receptor; and other related proteins. These proteins are found in various eukaryotes including vertebrates, higher plants, and fungi. Studies show that MLD is localized to the endoplasmic reticulum. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for
Probab=97.41 E-value=0.0042 Score=59.73 Aligned_cols=59 Identities=22% Similarity=0.159 Sum_probs=36.9
Q ss_pred hhhhhhhhhhhccccccCChHHHHHHHHHHHh-hccCCch-hhhhhhhhhhcCCCCC-CCCCcc
Q psy13036 60 LGNTIGAHRLWAHKTYTASWPLRLLLVTFQTL-SLTGPVY-DWVLDHRLHHKYHGTD-NDKYNF 120 (324)
Q Consensus 60 lgiT~G~HRl~sHrsfka~~~l~~~l~~~gt~-a~qgs~~-~Wv~~HR~HH~~sDt~-~DPhsp 120 (324)
.+..+..|= .+|+++--++.+-.++..+..+ .+. |.- +|-..|..||+++.++ .||=-+
T Consensus 57 ~~l~~l~Hd-~~H~~~f~~~~~N~~~g~~~~~~~g~-p~~~~~r~~H~~HH~~~n~~~~DpDi~ 118 (289)
T cd03508 57 HSLFLAIHE-ISHNLAFGKPLWNRLFGIFANLPIGV-PYSISFKKYHLEHHRYLGEDGLDTDIP 118 (289)
T ss_pred HHHHHHHHH-hHHHhhcCChHHHHHHHHHHHHHhcC-ChhhHHHHHHHHhccCCCCCCCCCCcc
Confidence 344444453 3477776677777666554333 333 333 5889999999999864 477544
No 20
>PLN02598 omega-6 fatty acid desaturase
Probab=97.26 E-value=0.007 Score=61.21 Aligned_cols=47 Identities=19% Similarity=0.304 Sum_probs=37.6
Q ss_pred ccccccCChHHHHHHHHHHHhhccCCchhhhhhhhhhhcCCC-CCCCC
Q psy13036 71 AHKTYTASWPLRLLLVTFQTLSLTGPVYDWVLDHRLHHKYHG-TDNDK 117 (324)
Q Consensus 71 sHrsfka~~~l~~~l~~~gt~a~qgs~~~Wv~~HR~HH~~sD-t~~DP 117 (324)
.|++|--++++.-++..+..+...-|...|-..|+.||+++. .++||
T Consensus 147 ~H~s~~~~~~lN~~vG~~~~~~ll~p~~~wr~~H~~HH~~tn~~~~D~ 194 (421)
T PLN02598 147 GHNSFSKNQLVEDIVGTIAFTPLIYPFEPWRIKHNTHHAHTNKLVMDT 194 (421)
T ss_pred cccCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccCcCCCCCCC
Confidence 499999899888777655444444689999999999999998 67885
No 21
>PLN02498 omega-3 fatty acid desaturase
Probab=94.92 E-value=0.2 Score=51.20 Aligned_cols=48 Identities=27% Similarity=0.512 Sum_probs=38.5
Q ss_pred ccccccCChHHHHHHHHHHHhhccCCchhhhhhhhhhhcCCC-CCCCCC
Q psy13036 71 AHKTYTASWPLRLLLVTFQTLSLTGPVYDWVLDHRLHHKYHG-TDNDKY 118 (324)
Q Consensus 71 sHrsfka~~~l~~~l~~~gt~a~qgs~~~Wv~~HR~HH~~sD-t~~DPh 118 (324)
.|+||--++++.-++..+......-+...|-..|+.||+++. .|+||-
T Consensus 172 gHgsf~~~k~lNd~vG~ll~~~ll~py~~Wr~sH~~HH~~Tn~~e~D~~ 220 (450)
T PLN02498 172 GHGSFSNNPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDES 220 (450)
T ss_pred cccccccChHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 399999888888877765555556789999999999999987 466663
No 22
>PLN02505 omega-6 fatty acid desaturase
Probab=94.45 E-value=0.18 Score=50.48 Aligned_cols=46 Identities=24% Similarity=0.460 Sum_probs=35.9
Q ss_pred ccccccCChHHHHHHHH-HHHhhccCCchhhhhhhhhhhcCCC-CCCCC
Q psy13036 71 AHKTYTASWPLRLLLVT-FQTLSLTGPVYDWVLDHRLHHKYHG-TDNDK 117 (324)
Q Consensus 71 sHrsfka~~~l~~~l~~-~gt~a~qgs~~~Wv~~HR~HH~~sD-t~~DP 117 (324)
+|+||--++++.-++.. ++. ....|...|-..|+.||+++. .+.||
T Consensus 108 gH~s~~~~~~lN~~vG~i~~~-~ll~p~~~Wr~~H~~HH~~tn~~~~D~ 155 (381)
T PLN02505 108 GHHAFSDYQWLDDTVGLVLHS-ALLVPYFSWKYSHRRHHSNTGSLERDE 155 (381)
T ss_pred cchhhhCChHHHHHHHHHHHH-HHcCCHHHHHHHHHHHhhccCCCCCCc
Confidence 49999888887777653 443 345788999999999999998 46776
No 23
>KOG4232|consensus
Probab=93.04 E-value=1.6 Score=44.16 Aligned_cols=48 Identities=13% Similarity=0.112 Sum_probs=37.2
Q ss_pred chhhHhhhccC-CCCCcCCCCcccccCCCCCcccChhHHHHHHHHHhccccccc
Q psy13036 230 TNLVFIVNKSL-WPQYHYLLPFDYRSGEYGTYNEGCSTAFIRVFAALGWATELR 282 (324)
Q Consensus 230 ~~~vallt~GE-wHNnHHafP~d~r~g~~~~~~~D~t~~~I~~l~~lGLa~~lk 282 (324)
..+...+..|- .|=-||-||.-.|+- +. -+...+..+|++-|+.+..+
T Consensus 355 ~~f~dwl~ghln~qieHHLFPtmpr~n-L~----~v~P~Vke~c~k~~l~y~~~ 403 (430)
T KOG4232|consen 355 SKFSDWLSGHLNFQIEHHLFPTMPRHN-LN----KVAPLVKELCKKHGLPYREK 403 (430)
T ss_pred hhHHHHHHhhhhhhHHhhcCCCCCccc-hH----HHHHHHHHHHHHcCCccccc
Confidence 34666666676 999999999988876 43 35668999999999988765
No 24
>COG5274 CYB5 Cytochrome b involved in lipid metabolism [Energy production and conversion / Lipid metabolism]
Probab=90.22 E-value=0.052 Score=48.19 Aligned_cols=38 Identities=5% Similarity=-0.132 Sum_probs=35.0
Q ss_pred CCcchhhHhhhccCCCCCcCCCCcccccCCCCCcccChhH
Q psy13036 227 SADTNLVFIVNKSLWPQYHYLLPFDYRSGEYGTYNEGCST 266 (324)
Q Consensus 227 s~n~~~vallt~GEwHNnHHafP~d~r~g~~~~~~~D~t~ 266 (324)
+++....++-+.||. ||||.+|.|+++. .+|++.|++.
T Consensus 4 ~~~~~~~~l~~~~~~-~~~~~~~~d~~~~-~~~~~~~~~~ 41 (164)
T COG5274 4 KTSEKCVILSDGPKY-TNKLYAGKDHAAL-DWDSLVQEHA 41 (164)
T ss_pred ccccceEEEeecCCc-ceeeecCccHHHH-hHHHhhcchh
Confidence 677888889999999 9999999999999 6899999999
No 25
>PF10520 Kua-UEV1_localn: Kua-ubiquitin conjugating enzyme hybrid localisation domain; InterPro: IPR019547 This entry represents part of the transcript of the fusion of two genes, the UEV1. UEV1 is an enzymatically inactive variant of the E2 ubiquitin-conjugating enzymes that regulate non-canonical elongation of ubiquitin chains, and Kua, an otherwise unknown gene. UEV1A is a nuclear protein, whereas both Kua and Kua-UEV localise to cytoplasmic structures, indicating that the addition of a Kua domain to UEV confers new biological properties. UEV1-Kua carries the B domain with its characteristic double histidine motif, and it is probably this domain which determines the cytoplasmic localisation. It is postulated that this hybrid transcript could preferentially direct the variant polyubiquitination of substrates closely associated with the cytoplasmic face of the endoplasmic reticulum, possibly, although not necessarily, in conjunction with membrane-bound ubiquitin-conjugating enzymes [].
Probab=57.78 E-value=36 Score=30.72 Aligned_cols=47 Identities=23% Similarity=0.266 Sum_probs=27.6
Q ss_pred hhhhhhhhhhhccccccCChHHHHHHHHHHHhhccCCchhhhhhhhhhhcCCCCCCCCCccc
Q psy13036 60 LGNTIGAHRLWAHKTYTASWPLRLLLVTFQTLSLTGPVYDWVLDHRLHHKYHGTDNDKYNFK 121 (324)
Q Consensus 60 lgiT~G~HRl~sHrsfka~~~l~~~l~~~gt~a~qgs~~~Wv~~HR~HH~~sDt~~DPhsp~ 121 (324)
...|--.|+ |||.-..-++++++ |-=+|-+ =|+ +.||.||+ .||+.+
T Consensus 95 v~~tnq~Hk-WsH~~~~~P~~V~~-LQ~~gil---lsr----~~H~~HH~------aPh~~~ 141 (178)
T PF10520_consen 95 VAFTNQFHK-WSHTYKSLPPWVRF-LQDAGIL---LSR----KHHRIHHV------APHDTN 141 (178)
T ss_pred HHHHHHHHH-HHcCCCCCCHHHHH-HHHCCcc---cCc----hhhhcccc------CcccCC
Confidence 344445787 79997775555544 3333222 244 37999996 566654
No 26
>PLN02434 fatty acid hydroxylase
Probab=44.59 E-value=1.4e+02 Score=28.13 Aligned_cols=14 Identities=21% Similarity=-0.002 Sum_probs=10.9
Q ss_pred hhhhhhhhhhcccc
Q psy13036 61 GNTIGAHRLWAHKT 74 (324)
Q Consensus 61 giT~G~HRl~sHrs 74 (324)
-+.=..||..-|.-
T Consensus 96 l~EY~lHRflfH~~ 109 (237)
T PLN02434 96 LLEYILHRFLFHIK 109 (237)
T ss_pred HHHHHHHHHHHcCC
Confidence 35567999999974
No 27
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=43.68 E-value=51 Score=29.09 Aligned_cols=45 Identities=13% Similarity=0.254 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhh---------hhhhHHHHHHHHHHHhhhhhhhh
Q psy13036 21 KILFWIYLHCCAIYGLLLVFTQ---------AKLMTTLYCFLLVMMSTLGNTIG 65 (324)
Q Consensus 21 ~~~~~~~lh~~al~~~~~~~~~---------~~~~~~~~~~~~~~~~~lgiT~G 65 (324)
.+++++++|.+.-++.+..+.. ..|.+++..++++.++.+|||-|
T Consensus 64 Rm~~~~GiP~~lG~~~f~~~y~l~~~~~~dvP~~~~~~~S~~~Fg~gllGisYG 117 (153)
T PF11947_consen 64 RMAVFVGIPTALGVAVFVVFYYLKSRQIVDVPPWAVLLVSLVFFGLGLLGISYG 117 (153)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHhccccccCchHHHHHHHHHHHHHHHhhhhh
Confidence 4455666665544443222221 34667777888888899999987
No 28
>PLN02601 beta-carotene hydroxylase
Probab=43.42 E-value=33 Score=33.18 Aligned_cols=20 Identities=20% Similarity=-0.014 Sum_probs=14.1
Q ss_pred HHHhhhhhhhhhhhhhcccc
Q psy13036 55 VMMSTLGNTIGAHRLWAHKT 74 (324)
Q Consensus 55 ~~~~~lgiT~G~HRl~sHrs 74 (324)
.+++|=++.-..|||.-|.+
T Consensus 143 tfvgMEf~Aw~aHKYvMHG~ 162 (303)
T PLN02601 143 AAVGMEFWARWAHRALWHDS 162 (303)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34456667777888888865
No 29
>cd03508 Delta4-sphingolipid-FADS-like The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase (MLD), reported to modulate biosynthesis of the epidermal growth factor receptor; and other related proteins. These proteins are found in various eukaryotes including vertebrates, higher plants, and fungi. Studies show that MLD is localized to the endoplasmic reticulum. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for
Probab=37.91 E-value=16 Score=35.29 Aligned_cols=15 Identities=7% Similarity=-0.226 Sum_probs=11.7
Q ss_pred CCCCcCCCCcccccC
Q psy13036 241 WPQYHYLLPFDYRSG 255 (324)
Q Consensus 241 wHNnHHafP~d~r~g 255 (324)
.||.||+++.+.+..
T Consensus 100 ~H~~HH~~~n~~~~D 114 (289)
T cd03508 100 YHLEHHRYLGEDGLD 114 (289)
T ss_pred HHHHhccCCCCCCCC
Confidence 699999999865533
No 30
>cd00547 QFR_TypeD_subunitD Quinol:fumarate reductase (QFR) Type D subfamily, 13kD hydrophobic subunit D; QFR couples the reduction of fumarate to succinate to the oxidation of quinol to quinone, the opposite reaction to that catalyzed by the related protein, succinate:quinine oxidoreductase (SQR). QFRs oxidize low potential quinols such as menaquinol and are involved in anaerobic respiration with fumarate as the terminal electron acceptor. SQR and QFR share a common subunit arrangement, composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type D as they contain two transmembrane subunits (C and D) and no heme groups. The structural arrangement allows efficient electron transfer between the catalytic subunit, through iron-sulfur centers, and the transmembrane subunit containing the electron donor (quinol). The quinone binding site resides in the transmembrane subunits.
Probab=37.25 E-value=34 Score=28.77 Aligned_cols=41 Identities=29% Similarity=0.579 Sum_probs=32.1
Q ss_pred hhhhhhhhccccccCChHHHHHHHHHHHhhccCCchhhhhhhhhhhcCCC
Q psy13036 63 TIGAHRLWAHKTYTASWPLRLLLVTFQTLSLTGPVYDWVLDHRLHHKYHG 112 (324)
Q Consensus 63 T~G~HRl~sHrsfka~~~l~~~l~~~gt~a~qgs~~~Wv~~HR~HH~~sD 112 (324)
...|.|..+ |-.+..-+.++..+- .---|.+.||.||.--|
T Consensus 44 a~~y~~i~a---Fa~s~iG~l~ll~~i------~lplWh~~HRihh~lHD 84 (115)
T cd00547 44 ALSYDRIIA---FAQSWIGKLFLLVLI------ILPMWHAMHRIHHGLHD 84 (115)
T ss_pred ccCHHHHHH---HHHhHHHHHHHHHHH------HHHHHHHHHHHHHhhhc
Confidence 678999876 888888777766553 23469999999998887
No 31
>PRK05470 fumarate reductase subunit D; Provisional
Probab=34.16 E-value=39 Score=28.59 Aligned_cols=46 Identities=24% Similarity=0.366 Sum_probs=33.5
Q ss_pred hhhhhhhhccccccCChHHHHHHHHHHHhhccCCchhhhhhhhhhhcCCC-CCCCC
Q psy13036 63 TIGAHRLWAHKTYTASWPLRLLLVTFQTLSLTGPVYDWVLDHRLHHKYHG-TDNDK 117 (324)
Q Consensus 63 T~G~HRl~sHrsfka~~~l~~~l~~~gt~a~qgs~~~Wv~~HR~HH~~sD-t~~DP 117 (324)
...|.|..+ |-.+..-+.++..+- .---|.+.||.||.--| .-..|
T Consensus 48 a~sy~~i~a---Fa~s~iG~l~ll~~i------~lplWh~~HRihHglHDlkih~~ 94 (118)
T PRK05470 48 ALSYERVLA---FAQSFIGKLFLLLMI------VLPLWCGLHRIHHGMHDLKIHVP 94 (118)
T ss_pred ccCHHHHHH---HHHhHHHHHHHHHHH------HHHHHHHHHHHHHHHhccccccC
Confidence 467888876 888888877766553 23459999999998877 44444
No 32
>COG3080 FrdD Fumarate reductase subunit D [Energy production and conversion]
Probab=31.07 E-value=18 Score=30.19 Aligned_cols=15 Identities=40% Similarity=0.756 Sum_probs=12.7
Q ss_pred hhhhhhhhhhcCCCC
Q psy13036 99 DWVLDHRLHHKYHGT 113 (324)
Q Consensus 99 ~Wv~~HR~HH~~sDt 113 (324)
-|.+.||.||.-.|-
T Consensus 75 lw~a~HRihHgmhdl 89 (118)
T COG3080 75 LWCALHRIHHGMHDL 89 (118)
T ss_pred HHHHHHHHHhhhhhe
Confidence 489999999988773
No 33
>PF04116 FA_hydroxylase: Fatty acid hydroxylase superfamily; InterPro: IPR006694 This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases. Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways []. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax. These enzymes contain two copies of a HXHH motif. Members of this family are integral membrane proteins.; GO: 0005506 iron ion binding, 0016491 oxidoreductase activity, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process
Probab=29.68 E-value=31 Score=27.13 Aligned_cols=13 Identities=31% Similarity=0.705 Sum_probs=9.3
Q ss_pred Cchhhhhhhhhhhc
Q psy13036 96 PVYDWVLDHRLHHK 109 (324)
Q Consensus 96 s~~~Wv~~HR~HH~ 109 (324)
.+.-| +.|+.||+
T Consensus 22 ~~~l~-~~H~~HH~ 34 (114)
T PF04116_consen 22 IPFLW-RIHKVHHS 34 (114)
T ss_pred CchHH-HHHHHHhC
Confidence 34456 78999993
No 34
>PLN02601 beta-carotene hydroxylase
Probab=28.83 E-value=1.8e+02 Score=28.21 Aligned_cols=32 Identities=25% Similarity=0.271 Sum_probs=20.6
Q ss_pred hhhhhhccccccCChH--HHHHHHHHHHhhccCCchhhhhhhhhhhc
Q psy13036 65 GAHRLWAHKTYTASWP--LRLLLVTFQTLSLTGPVYDWVLDHRLHHK 109 (324)
Q Consensus 65 G~HRl~sHrsfka~~~--l~~~l~~~gt~a~qgs~~~Wv~~HR~HH~ 109 (324)
..|=.+.|+-|+..+- ..|+=.+ ++-|+.||+
T Consensus 226 fVHDgLVHqRfp~~~~a~~~Y~rrl-------------~~AHklHHa 259 (303)
T PLN02601 226 FVHDGLVHKRFPVGPIANVPYLRKV-------------AAAHQLHHT 259 (303)
T ss_pred HHhhhhhccccccCCCCCCHHHHHH-------------HHHHHhhcc
Confidence 4688888988876422 2222222 357999999
No 35
>PF14756 Pdase_C33_assoc: Peptidase_C33-associated domain
Probab=27.49 E-value=45 Score=28.39 Aligned_cols=54 Identities=6% Similarity=0.025 Sum_probs=38.5
Q ss_pred ccChhHHHHHHHHHhc----cccccccCCHHHHHhhcccccCCcccHHHHHHHHhhccC
Q psy13036 261 NEGCSTAFIRVFAALG----WATELRTIDTNTIRECLPECVKFKKPLVKVLEEKAYKYN 315 (324)
Q Consensus 261 ~~D~t~~~I~~l~~lG----La~~lk~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (324)
|.-+++ +|-+++-+- --..-.+++++.+.+++.+-..+...++||++++++..-
T Consensus 69 q~~lgk-iislcqvie~ccc~qnktnr~tpeeva~kidqYlrgA~sleEClarlEra~p 126 (147)
T PF14756_consen 69 QVCLGK-IISLCQVIEECCCSQNKTNRATPEEVAAKIDQYLRGATSLEECLARLERARP 126 (147)
T ss_pred hhHHHH-HHHHHHHHHHHHcccCcccCCCHHHHHHHHHHHHhccccHHHHHHHHhccCC
Confidence 333443 555555442 123346888999999999999999999999999987653
No 36
>KOG0873|consensus
Probab=26.82 E-value=89 Score=30.30 Aligned_cols=46 Identities=20% Similarity=0.284 Sum_probs=25.1
Q ss_pred ccceeeeccCC-CCCCCCCcchhhHhhhccCCCCCcCCCCcccccCCCCCc
Q psy13036 211 INSANILWGLD-PLDKRSADTNLVFIVNKSLWPQYHYLLPFDYRSGEYGTY 260 (324)
Q Consensus 211 VNS~~H~~G~r-~y~~~s~n~~~vallt~GEwHNnHHafP~d~r~g~~~~~ 260 (324)
.++..|--||. |+ |-++.... -..+|.|++||..+.+.-++.++|+
T Consensus 204 ~~t~~~HsGY~fPw---sl~~~~pf-y~ga~~HD~HH~~f~~n~~~~f~~~ 250 (283)
T KOG0873|consen 204 LETVESHSGYDFPW---SLSKLIPF-YGGAEHHDYHHLVFIGNFASVFGYL 250 (283)
T ss_pred HHHhhccCCCCCCc---cccccCcc-cCCCcccchhhhhccccccchhHHH
Confidence 35556666654 33 33332221 2233499999999965555445553
No 37
>KOG4232|consensus
Probab=26.07 E-value=55 Score=33.43 Aligned_cols=22 Identities=9% Similarity=-0.049 Sum_probs=16.8
Q ss_pred CCCCcCCCCcccccCCCCCcccCh
Q psy13036 241 WPQYHYLLPFDYRSGEYGTYNEGC 264 (324)
Q Consensus 241 wHNnHHafP~d~r~g~~~~~~~D~ 264 (324)
+||-||+.|.++.--+ --+++|
T Consensus 198 ~H~~HHa~pN~~~~Dp--Di~~~P 219 (430)
T KOG4232|consen 198 HHNQHHAAPNSLDKDP--DIDFEP 219 (430)
T ss_pred HHhhhhccCccCCCCc--cccccc
Confidence 7999999998887764 335555
No 38
>COG3000 ERG3 Sterol desaturase [Lipid metabolism]
Probab=23.63 E-value=1.4e+02 Score=28.33 Aligned_cols=17 Identities=18% Similarity=0.206 Sum_probs=11.3
Q ss_pred cC-CCCCcCCCC-cccccC
Q psy13036 239 SL-WPQYHYLLP-FDYRSG 255 (324)
Q Consensus 239 GE-wHNnHHafP-~d~r~g 255 (324)
+- +|.-||..- .|.+.|
T Consensus 203 ~p~~H~lHH~~~~~~~Nyg 221 (271)
T COG3000 203 TPRHHRLHHSKDPYDKNYG 221 (271)
T ss_pred CchHHHHhccCCCCCCcch
Confidence 45 999999865 334443
No 39
>KOG2987|consensus
Probab=22.31 E-value=2.7e+02 Score=26.98 Aligned_cols=70 Identities=19% Similarity=0.234 Sum_probs=42.7
Q ss_pred hhhhHHHHHHHHHHHh---hhhhhhhhhhhhccccccCChHHH-HHHHHHHHh-hccCCchhhhhhhhhhhcCCCCC
Q psy13036 43 AKLMTTLYCFLLVMMS---TLGNTIGAHRLWAHKTYTASWPLR-LLLVTFQTL-SLTGPVYDWVLDHRLHHKYHGTD 114 (324)
Q Consensus 43 ~~~~~~~~~~~~~~~~---~lgiT~G~HRl~sHrsfka~~~l~-~~l~~~gt~-a~qgs~~~Wv~~HR~HH~~sDt~ 114 (324)
.+|.-+++. -|+++ +=..|+..|-+----+|..++|+. +++.++.-+ .|.-=.++.-.-|-.||+|...|
T Consensus 64 l~W~~il~~--AYf~gg~iNhsl~LAIHeiSHN~aFg~~rpl~NR~~g~fANLPigvP~siSFkkYHleHHry~G~D 138 (324)
T KOG2987|consen 64 LDWKWILFI--AYFFGGFINHSLTLAIHEISHNLAFGTNRPLYNRIFGFFANLPIGVPMSISFKKYHLEHHRYLGVD 138 (324)
T ss_pred ccHHHHHHH--HHHhhhhhchhHHHHHHHhhhhhhcccCchHHHHHHHHhhcCcccCceeeeehhhhhHHhHhcCCc
Confidence 556544432 34443 346778888876667999987754 444444322 22222456678899999997643
No 40
>KOG2987|consensus
Probab=22.10 E-value=29 Score=33.42 Aligned_cols=22 Identities=9% Similarity=0.119 Sum_probs=18.0
Q ss_pred hhhHhhhccC-CCCCcCCCCccc
Q psy13036 231 NLVFIVNKSL-WPQYHYLLPFDY 252 (324)
Q Consensus 231 ~~vallt~GE-wHNnHHafP~d~ 252 (324)
.++.++|+.- +||-||.||.-.
T Consensus 247 GplN~~tfNvGYH~EHHDFP~Ip 269 (324)
T KOG2987|consen 247 GPLNLLTFNVGYHVEHHDFPYIP 269 (324)
T ss_pred cceeeEEEecccccccccCCCCC
Confidence 3566789999 999999999643
No 41
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=20.53 E-value=76 Score=27.83 Aligned_cols=25 Identities=16% Similarity=0.126 Sum_probs=22.3
Q ss_pred ccChhHHHHHHHHHhccccccccCC
Q psy13036 261 NEGCSTAFIRVFAALGWATELRTID 285 (324)
Q Consensus 261 ~~D~t~~~I~~l~~lGLa~~lk~~~ 285 (324)
.+|....+..=++.|||+.|+..+.
T Consensus 39 ~WD~~~T~~qNy~~lGL~~d~N~~~ 63 (164)
T PF09420_consen 39 AWDKKKTLRQNYARLGLASDPNKAI 63 (164)
T ss_pred hcCCCCCHHHHHHHcCcccCCCcch
Confidence 4688888999999999999998877
No 42
>COG4327 Predicted membrane protein [Function unknown]
Probab=20.10 E-value=55 Score=26.67 Aligned_cols=14 Identities=14% Similarity=0.311 Sum_probs=11.5
Q ss_pred HhhccCCchhhhhh
Q psy13036 90 TLSLTGPVYDWVLD 103 (324)
Q Consensus 90 t~a~qgs~~~Wv~~ 103 (324)
.++.||||+..|..
T Consensus 55 wma~QGsiitfVvl 68 (101)
T COG4327 55 WMAQQGSIITFVVL 68 (101)
T ss_pred hhhcCCCeeehHHH
Confidence 58999999888754
Done!