Query psy13036
Match_columns 324
No_of_seqs 139 out of 1122
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 17:49:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13036.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13036hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h8d_A Myosin-VI; myosin VI, m 20.9 12 0.0004 31.1 -1.5 20 111-130 25-44 (141)
2 1kf6_D Fumarate reductase 13 k 19.9 1.1E+02 0.0037 24.8 4.0 41 63-112 49-89 (119)
3 2byg_A Channel associated prot 9.1 69 0.0024 24.7 0.0 14 107-120 4-18 (117)
4 2cly_C ATP synthase coupling f 8.2 1.3E+02 0.0044 22.6 1.1 21 301-321 38-58 (77)
5 3l4f_D SH3 and multiple ankyri 8.2 98 0.0033 24.5 0.6 20 102-121 3-24 (132)
6 3hrd_D Nicotinate dehydrogenas 7.4 2.8E+02 0.0096 23.2 3.1 41 272-312 110-153 (160)
7 3b76_A E3 ubiquitin-protein li 7.1 97 0.0033 24.1 0.0 17 104-120 2-18 (118)
8 1v54_G Cytochrome C oxidase po 7.0 2.5E+02 0.0085 21.3 2.3 22 16-37 13-34 (85)
9 3b1s_A Flagellar biosynthetic 8.9 1.1E+02 0.0037 21.2 0.0 11 110-120 14-24 (52)
10 2vt1_A Surface presentation of 6.4 1.1E+02 0.0037 21.2 0.0 11 110-120 14-24 (52)
No 1
>3h8d_A Myosin-VI; myosin VI, myosin 6, DAB2, cargo binding, protein-peptide complex, actin-binding, ATP-binding, calmodulin-binding; 2.20A {Mus musculus} PDB: 2kia_A
Probab=20.88 E-value=12 Score=31.11 Aligned_cols=20 Identities=30% Similarity=0.498 Sum_probs=17.6
Q ss_pred CCCCCCCCccccchHHHhhh
Q psy13036 111 HGTDNDKYNFKRGFLWAHMG 130 (324)
Q Consensus 111 sDt~~DPhsp~rGf~~sH~g 130 (324)
+|...||.++++|.||+|+-
T Consensus 25 ~~~~k~~~~~k~G~WYAHFd 44 (141)
T 3h8d_A 25 ADQYKDPQNKKKGWWYAHFD 44 (141)
T ss_dssp GGTTSCGGGCCEEEEEEEEE
T ss_pred cccccCCCCcccceEEEeeC
Confidence 57788888999999999976
No 2
>1kf6_D Fumarate reductase 13 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_D* 1l0v_D* 2b76_D* 3cir_D* 3p4p_D* 3p4q_D* 3p4r_D* 3p4s_D*
Probab=19.94 E-value=1.1e+02 Score=24.83 Aligned_cols=41 Identities=24% Similarity=0.450 Sum_probs=28.8
Q ss_pred hhhhhhhhccccccCChHHHHHHHHHHHhhccCCchhhhhhhhhhhcCCC
Q psy13036 63 TIGAHRLWAHKTYTASWPLRLLLVTFQTLSLTGPVYDWVLDHRLHHKYHG 112 (324)
Q Consensus 63 T~G~HRl~sHrsfka~~~l~~~l~~~gt~a~qgs~~~Wv~~HR~HH~~sD 112 (324)
+..|.|.. +|-.++.-+.++..+-. ---|.+.||.||.--|
T Consensus 49 ~lsY~~~~---aFa~s~ig~l~ll~~i~------lplWh~~HRihh~lHD 89 (119)
T 1kf6_D 49 ALSYERVL---AFAQSFIGRVFLFLMIV------LPLWCGLHRMHHAMHD 89 (119)
T ss_dssp TTSHHHHH---HHHTSHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
T ss_pred cccHHHHH---HHHhcHHHHHHHHHHHH------HHHHHHHHHHHHhhhh
Confidence 44677775 57777777776655432 3459999999998766
No 3
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=9.11 E-value=69 Score=24.75 Aligned_cols=14 Identities=36% Similarity=0.520 Sum_probs=0.0
Q ss_pred hhcC-CCCCCCCCcc
Q psy13036 107 HHKY-HGTDNDKYNF 120 (324)
Q Consensus 107 HH~~-sDt~~DPhsp 120 (324)
||.+ .+.+.||||-
T Consensus 4 ~~~~~~~~~~dp~s~ 18 (117)
T 2byg_A 4 HHHHSSGVDLGTENL 18 (117)
T ss_dssp ---------------
T ss_pred cccccCccCCCCccc
Confidence 3444 4479999996
No 4
>2cly_C ATP synthase coupling factor 6, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.45.1.1 PDB: 1vzs_A 2wss_V*
Probab=8.20 E-value=1.3e+02 Score=22.57 Aligned_cols=21 Identities=19% Similarity=0.140 Sum_probs=17.3
Q ss_pred ccHHHHHHHHhhccCCccccC
Q psy13036 301 KPLVKVLEEKAYKYNFEDLMK 321 (324)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~ 321 (324)
+.++|.+++++..|+..|+-|
T Consensus 38 kel~~el~kL~~~YGggDm~k 58 (77)
T 2cly_C 38 QDLDRELFKLKQMYGKADMNT 58 (77)
T ss_dssp HHHHHHHHHHHHHHCSSCTTS
T ss_pred HHHHHHHHHHHHHHCcchHhh
Confidence 467799999999999988644
No 5
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=8.19 E-value=98 Score=24.48 Aligned_cols=20 Identities=15% Similarity=0.089 Sum_probs=4.8
Q ss_pred hhhhhhhcCCC--CCCCCCccc
Q psy13036 102 LDHRLHHKYHG--TDNDKYNFK 121 (324)
Q Consensus 102 ~~HR~HH~~sD--t~~DPhsp~ 121 (324)
..|..||.+.+ ...||||+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~s~~ 24 (132)
T 3l4f_D 3 SSHHHHHHSQDPLVPRGSGSDY 24 (132)
T ss_dssp ----------------CCSCCC
T ss_pred cchhhhhhhcCCCccCCCCCCc
Confidence 35677777777 578999873
No 6
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=7.43 E-value=2.8e+02 Score=23.19 Aligned_cols=41 Identities=5% Similarity=-0.111 Sum_probs=28.4
Q ss_pred HHHhccccccccCCHHHHHhhccccc--C-CcccHHHHHHHHhh
Q psy13036 272 FAALGWATELRTIDTNTIRECLPECV--K-FKKPLVKVLEEKAY 312 (324)
Q Consensus 272 l~~lGLa~~lk~~~~~~i~~~~~~~~--~-~~~~~~~~~~~~~~ 312 (324)
|+...|..+-..|+.+.|++.+.-.. . +..+|.+++++.++
T Consensus 110 ms~~all~~~~~pt~~eI~~al~GNlCRCtgY~~I~~Av~~aa~ 153 (160)
T 3hrd_D 110 LTAKALLDKNPDPTDEEITVAMSGNLCRCTGYIKIHAAVRYAVE 153 (160)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHTTCCCSSSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHcCCCCCCCCcHHHHHHHHHHHH
Confidence 34444556667899999999886554 3 44589998876654
No 7
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=7.05 E-value=97 Score=24.09 Aligned_cols=17 Identities=35% Similarity=0.526 Sum_probs=0.6
Q ss_pred hhhhhcCCCCCCCCCcc
Q psy13036 104 HRLHHKYHGTDNDKYNF 120 (324)
Q Consensus 104 HR~HH~~sDt~~DPhsp 120 (324)
|..||.-+..+.||+|.
T Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (118)
T 3b76_A 2 HHHHHHSSGVDLGTENL 18 (118)
T ss_dssp ----------------C
T ss_pred CcCCccccCCCCCcccc
Confidence 55566666789999986
No 8
>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G* 3aso_G* 2occ_G* 1oco_G* ...
Probab=7.04 E-value=2.5e+02 Score=21.26 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=17.2
Q ss_pred ceeehhHHHHHHHHHHHHHHHH
Q psy13036 16 EIIWLKILFWIYLHCCAIYGLL 37 (324)
Q Consensus 16 ~i~W~~~~~~~~lh~~al~~~~ 37 (324)
.-.|.++-+++.+|+++++++.
T Consensus 13 ~~~Wkkis~~va~P~v~l~~~n 34 (85)
T 1v54_G 13 ARTWRFLTFGLALPSVALCTLN 34 (85)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4568888888889988887654
No 9
>3b1s_A Flagellar biosynthetic protein FLHB; type III secretion system, protein transport, MEMB protein; 2.55A {Aquifex aeolicus}
Probab=8.93 E-value=1.1e+02 Score=21.20 Aligned_cols=11 Identities=9% Similarity=0.027 Sum_probs=7.8
Q ss_pred CCCCCCCCCcc
Q psy13036 110 YHGTDNDKYNF 120 (324)
Q Consensus 110 ~sDt~~DPhsp 120 (324)
|-++|+||+=-
T Consensus 14 ~Ke~EGdP~iK 24 (52)
T 3b1s_A 14 YKQLEGHPEVK 24 (52)
Confidence 45788888754
No 10
>2vt1_A Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=6.41 E-value=1.1e+02 Score=21.16 Aligned_cols=11 Identities=9% Similarity=-0.013 Sum_probs=0.0
Q ss_pred CCCCCCCCCcc
Q psy13036 110 YHGTDNDKYNF 120 (324)
Q Consensus 110 ~sDt~~DPhsp 120 (324)
|-++|+||+=-
T Consensus 14 ~Ke~EGdP~iK 24 (52)
T 2vt1_A 14 YIEQEGHFETK 24 (52)
T ss_dssp -----------
T ss_pred HHhccCCHHHH
Confidence 45788888754
Done!