Query psy13036
Match_columns 324
No_of_seqs 139 out of 1122
Neff 5.9
Searched_HMMs 13730
Date Fri Aug 16 17:49:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13036.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13036hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kf6d_ f.21.2.2 (D:) Fumarate 14.3 21 0.0015 27.1 0.4 41 63-112 49-89 (119)
2 d1rm6c1 a.56.1.1 (C:82-157) 4- 11.6 58 0.0042 22.4 2.2 40 275-314 31-73 (76)
3 d1n62a1 a.56.1.1 (A:82-163) Ca 9.6 74 0.0054 22.2 2.2 45 272-316 30-77 (82)
4 d1k8ua_ a.39.1.2 (A:) Calcycli 9.4 28 0.002 24.4 -0.3 16 106-121 14-29 (89)
5 d1v54g_ f.23.2.1 (G:) Mitochon 9.3 82 0.0059 22.1 2.3 19 18-36 15-33 (84)
6 d1v97a1 a.56.1.1 (A:93-165) Xa 9.3 63 0.0046 22.1 1.7 35 277-311 35-72 (73)
7 d1ffva1 a.56.1.1 (A:82-157) Ca 9.1 1.1E+02 0.0077 21.0 2.9 41 273-313 30-73 (76)
8 d1vlba1 a.56.1.1 (A:81-193) Al 8.8 1.1E+02 0.008 22.5 3.0 41 275-315 32-77 (113)
9 d2clyc1 f.45.1.1 (C:5-70) ATPa 6.6 81 0.0059 21.2 1.1 21 301-321 34-54 (66)
10 d3cr5x1 a.39.1.2 (X:0-89) Calc 6.5 49 0.0036 23.3 -0.1 54 106-162 14-73 (90)
No 1
>d1kf6d_ f.21.2.2 (D:) Fumarate reductase subunit FrdD {Escherichia coli [TaxId: 562]}
Probab=14.28 E-value=21 Score=27.11 Aligned_cols=41 Identities=24% Similarity=0.450 Sum_probs=29.3
Q ss_pred hhhhhhhhccccccCChHHHHHHHHHHHhhccCCchhhhhhhhhhhcCCC
Q psy13036 63 TIGAHRLWAHKTYTASWPLRLLLVTFQTLSLTGPVYDWVLDHRLHHKYHG 112 (324)
Q Consensus 63 T~G~HRl~sHrsfka~~~l~~~l~~~gt~a~qgs~~~Wv~~HR~HH~~sD 112 (324)
...|+|.. +|-.++.-+.++..+-+ .--|...||.||.--|
T Consensus 49 a~~y~~i~---aFa~s~iG~l~ll~~i~------lplWh~~HRihHglHD 89 (119)
T d1kf6d_ 49 ALSYERVL---AFAQSFIGRVFLFLMIV------LPLWCGLHRMHHAMHD 89 (119)
T ss_dssp TTSHHHHH---HHHTSHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
T ss_pred ccCHHHHH---HHHhhHHHHHHHHHHHH------HHHHHHHHHHHHHHhh
Confidence 37788886 46667777777665532 2359999999997665
No 2
>d1rm6c1 a.56.1.1 (C:82-157) 4-hydroxybenzoyl-CoA reductase gamma subunit HrcC, C-terminal domain {Thauera aromatica [TaxId: 59405]}
Probab=11.57 E-value=58 Score=22.44 Aligned_cols=40 Identities=13% Similarity=0.065 Sum_probs=28.5
Q ss_pred hccccccccCCHHHHHhhccccc--CCc-ccHHHHHHHHhhcc
Q psy13036 275 LGWATELRTIDTNTIRECLPECV--KFK-KPLVKVLEEKAYKY 314 (324)
Q Consensus 275 lGLa~~lk~~~~~~i~~~~~~~~--~~~-~~~~~~~~~~~~~~ 314 (324)
..|...-..|+.+.|++.+.-.. .++ .+|.+++.+.+.+.
T Consensus 31 ~~ll~~~~~ps~~ei~~~l~GnlCRCtgY~~I~~Av~~aa~~r 73 (76)
T d1rm6c1 31 EALLRKNPSPSRDEIKAALAGNLCRCTGYVKIIKSVETAAAAR 73 (76)
T ss_dssp HHHHHHCSSCCHHHHHHHTTTCCCSSSCSHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCcchHHHHHHHhCCcCcCCCcHHHHHHHHHHHHHh
Confidence 33445567788999999986554 444 49999998887653
No 3
>d1n62a1 a.56.1.1 (A:82-163) Carbon monoxide (CO) dehydrogenase iron-sulfur protein, C-domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]}
Probab=9.59 E-value=74 Score=22.18 Aligned_cols=45 Identities=18% Similarity=0.042 Sum_probs=31.2
Q ss_pred HHHhccccccccCCHHHHHhhccccc--CCc-ccHHHHHHHHhhccCC
Q psy13036 272 FAALGWATELRTIDTNTIRECLPECV--KFK-KPLVKVLEEKAYKYNF 316 (324)
Q Consensus 272 l~~lGLa~~lk~~~~~~i~~~~~~~~--~~~-~~~~~~~~~~~~~~~~ 316 (324)
|+...|..+-..|+.+.|++.+.-.. .++ .+|.+++++.+.+.+.
T Consensus 30 m~~~~Ll~~~~~pt~~eir~~LsGnlCRCtgY~~I~~Av~~aa~~~~g 77 (82)
T d1n62a1 30 MRSHRLLQENPSPTEAEIRFGIGGNLCRCTGYQNIVKAIQYAAAKING 77 (82)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHTTTCCCSSSTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhccccchHHHHHhccccccCCCCHHHHHHHHHHHHHhcC
Confidence 33445555667889999999986443 444 4899999888765544
No 4
>d1k8ua_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a6 [TaxId: 9606]}
Probab=9.43 E-value=28 Score=24.42 Aligned_cols=16 Identities=38% Similarity=0.777 Sum_probs=13.1
Q ss_pred hhhcCCCCCCCCCccc
Q psy13036 106 LHHKYHGTDNDKYNFK 121 (324)
Q Consensus 106 ~HH~~sDt~~DPhsp~ 121 (324)
.=|+|+|+|+|+.+-.
T Consensus 14 vF~kya~~dg~~~~ls 29 (89)
T d1k8ua_ 14 IFHKYSGREGDKHTLS 29 (89)
T ss_dssp HHHHHHTSSSCTTEEE
T ss_pred HHHHHcccCCCCCeec
Confidence 3489999999998754
No 5
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.28 E-value=82 Score=22.14 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=15.7
Q ss_pred eehhHHHHHHHHHHHHHHH
Q psy13036 18 IWLKILFWIYLHCCAIYGL 36 (324)
Q Consensus 18 ~W~~~~~~~~lh~~al~~~ 36 (324)
.|.++.+++.+|+++++++
T Consensus 15 lWkkis~~va~P~i~l~~~ 33 (84)
T d1v54g_ 15 TWRFLTFGLALPSVALCTL 33 (84)
T ss_dssp HHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5899998899999888654
No 6
>d1v97a1 a.56.1.1 (A:93-165) Xanthine oxidase, domain 2 {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.26 E-value=63 Score=22.06 Aligned_cols=35 Identities=9% Similarity=0.111 Sum_probs=24.8
Q ss_pred cccccccCCHHHHHhhccccc--CCc-ccHHHHHHHHh
Q psy13036 277 WATELRTIDTNTIRECLPECV--KFK-KPLVKVLEEKA 311 (324)
Q Consensus 277 La~~lk~~~~~~i~~~~~~~~--~~~-~~~~~~~~~~~ 311 (324)
|..+-..|+.+.|++.+.-.. .++ .+|.+++++.+
T Consensus 35 ll~~~~~pt~~~i~~alsGnlCRCtgY~~I~~Av~~aa 72 (73)
T d1v97a1 35 LLRNQPEPTVEEIEDAFQGNLCRCTGYRPILQGFRTFA 72 (73)
T ss_dssp HHHHCSSCCHHHHHHTTTTCCCSSSCSHHHHHHHGGGC
T ss_pred HHHhCCcCCHHHHHHHHCcccccCCCCHHHHHHHHHHh
Confidence 344556788999999887554 444 48988887654
No 7
>d1ffva1 a.56.1.1 (A:82-157) Carbon monoxide (CO) dehydrogenase iron-sulfur protein, C-domain {Hydrogenophaga pseudoflava [TaxId: 47421]}
Probab=9.11 E-value=1.1e+02 Score=20.99 Aligned_cols=41 Identities=20% Similarity=0.067 Sum_probs=28.9
Q ss_pred HHhccccccccCCHHHHHhhcccc--cCCcc-cHHHHHHHHhhc
Q psy13036 273 AALGWATELRTIDTNTIRECLPEC--VKFKK-PLVKVLEEKAYK 313 (324)
Q Consensus 273 ~~lGLa~~lk~~~~~~i~~~~~~~--~~~~~-~~~~~~~~~~~~ 313 (324)
+...|..+-..|+.+.|++.+.-. ..+++ +|.+++.+.+++
T Consensus 30 ~~~~ll~~~~~pt~~ei~~~lsGnlCRCtgY~~I~~Av~~aa~~ 73 (76)
T d1ffva1 30 RAYRFLQENPNPTEAEIRMGMTGNLCRCTGYQNIVKAVQYAARK 73 (76)
T ss_dssp HHHHHHHHCSSCCHHHHHHHTTTCCCSSSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccchHHHHHHHhCCcCcCCCCHHHHHHHHHHHHH
Confidence 344455566788999999988654 34444 899999887754
No 8
>d1vlba1 a.56.1.1 (A:81-193) Aldehyde oxidoreductase, domain 2 {Desulfovibrio gigas [TaxId: 879]}
Probab=8.77 E-value=1.1e+02 Score=22.48 Aligned_cols=41 Identities=20% Similarity=0.250 Sum_probs=28.3
Q ss_pred hccccccccCCHHHHHhhccc----ccCCcc-cHHHHHHHHhhccC
Q psy13036 275 LGWATELRTIDTNTIRECLPE----CVKFKK-PLVKVLEEKAYKYN 315 (324)
Q Consensus 275 lGLa~~lk~~~~~~i~~~~~~----~~~~~~-~~~~~~~~~~~~~~ 315 (324)
..|...-..|+.+.|++.+.- ...+++ +|.++..+.+...+
T Consensus 32 ~~ll~~~~~p~~~~i~~~l~g~~NlCRCtgY~~I~~Av~~aa~~~~ 77 (113)
T d1vlba1 32 KGLLDTNADPSREDVRDWFQKHRNACRCTGYKPLVDAVMDAAAVIN 77 (113)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHTTCCCSSSCSHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccchHHHHHHhcCCcccccCcHHHHHHHHHHHHHHc
Confidence 344555677889999988753 345554 99999888765443
No 9
>d2clyc1 f.45.1.1 (C:5-70) ATPase subunit F6 {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.58 E-value=81 Score=21.22 Aligned_cols=21 Identities=19% Similarity=0.140 Sum_probs=17.2
Q ss_pred ccHHHHHHHHhhccCCccccC
Q psy13036 301 KPLVKVLEEKAYKYNFEDLMK 321 (324)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~ 321 (324)
..+++.++++++.|+..|+-+
T Consensus 34 kel~~el~kl~~~YG~gdm~~ 54 (66)
T d2clyc1 34 QDLDRELFKLKQMYGKADMNT 54 (66)
T ss_dssp HHHHHHHHHHHHHHCSSCTTS
T ss_pred HHHHHHHHHHHHHHCCCchhh
Confidence 467799999999999998643
No 10
>d3cr5x1 a.39.1.2 (X:0-89) Calcyclin (S100) {Cow (Bos taurus), s100b [TaxId: 9913]}
Probab=6.48 E-value=49 Score=23.31 Aligned_cols=54 Identities=19% Similarity=0.364 Sum_probs=29.7
Q ss_pred hhhcCCCCCCCCCcccc----chHHHhhhccccC-CChh-hhhhccCCCcccccCCCeEEeeh
Q psy13036 106 LHHKYHGTDNDKYNFKR----GFLWAHMGNRYHT-RNPA-ADNLHTQVDMRDVEEDPIVMWQY 162 (324)
Q Consensus 106 ~HH~~sDt~~DPhsp~r----Gf~~sH~gWll~~-~~~~-~~~~~~~~d~~Dl~~dp~~~~q~ 162 (324)
.=|+|+++++|++.-.+ -+.-+-++=.+.. ..|+ +.+.. ..-|...|-.+-|++
T Consensus 14 vFhkYa~~~G~~~tLsk~Elk~Ll~~El~~~l~~~~d~~~~d~~m---~~LD~n~Dg~vdF~E 73 (90)
T d3cr5x1 14 VFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVM---ETLDSDGDGECDFQE 73 (90)
T ss_dssp HHHHHHTSSSSTTSBCHHHHHHHHHHHCTTTSCCCCSHHHHHHHH---HHHCTTSSSSBCHHH
T ss_pred HHHHHhccCCCcCcCCHHHHHHHHHHHHHHHhcCCCCHHHHHHHH---HHhcCCCCCcCCHHH
Confidence 34899999999988763 3443333322322 2232 22221 124556677777765
Done!