RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13036
(324 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.007
Identities = 40/237 (16%), Positives = 72/237 (30%), Gaps = 84/237 (35%)
Query: 20 LKILFWIYLHCCAIYGLLLVFTQAKLMTTLYCFLLVMMSTLGNTIGA------------H 67
+ +LF+I + C +A T+L ++ +L N G
Sbjct: 300 ITVLFFIGVRC----------YEAYPNTSLP--PSILEDSLENNEGVPSPMLSISNLTQE 347
Query: 68 RLWAHKTYT-ASWP----LRLLLV-TFQTLSLTGPVYD-WVLDHRLHHKYHGTDND---- 116
++ + T + P + + LV + L ++GP + L+ L + D
Sbjct: 348 QVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI 407
Query: 117 -----KYNFKRGFLWAHMGNRYHTR--NPAADNL---------------------HTQ-- 146
K F FL + + +H+ PA+D + T
Sbjct: 408 PFSERKLKFSNRFL--PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG 465
Query: 147 VDMRDVEED---PIVMW--QYRLYWAFAIILGV--IL---PLNTPMEYWDESGVSTL 193
D+R + IV + + W IL P SG+ L
Sbjct: 466 SDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGA-------SGLGVL 515
Score = 31.6 bits (71), Expect = 0.41
Identities = 25/146 (17%), Positives = 43/146 (29%), Gaps = 54/146 (36%)
Query: 194 FVVGFLRITLSLHMVWL----------INSANILWGLDPL-----------DKRSADTNL 232
F FL + H L + N+ + + D R ++
Sbjct: 416 FSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSI 475
Query: 233 VF-----IVNKSL-WP-----QYHYLLPFDYRSGEYG----TYN--EGCSTAFIRVFAAL 275
I+ + W + ++L F G G T+ +G +RV A
Sbjct: 476 SERIVDCIIRLPVKWETTTQFKATHILDFG-PGGASGLGVLTHRNKDGTG---VRVIVA- 530
Query: 276 GWATELRTIDTNTIRECLPECVKFKK 301
G T+D N + FK+
Sbjct: 531 G------TLDINPDDD-----YGFKQ 545
Score = 30.8 bits (69), Expect = 0.73
Identities = 44/239 (18%), Positives = 70/239 (29%), Gaps = 85/239 (35%)
Query: 81 LRLLLVTFQTLSLTGPVYDWVLD-H----RLHHKYHGTDNDKYNFKRGFLWA-HMGNR-Y 133
L L L F+ L G D H +L + T + ++ A M R +
Sbjct: 84 LNLCLTEFENCYLEGN------DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPF 137
Query: 134 HTRNPAADNLHTQVDMRDVEEDPIVMWQYRLYWAFAIILGVILPLNTPMEYWDESGVSTL 193
++ +A L R V E +L F G +Y++E
Sbjct: 138 DKKSNSA--L-----FRAVGEG-----NAQLVAIFG---G----QGNTDDYFEE------ 172
Query: 194 FVVGFLRITLSLHMVW------LINSANILWGLDPLDKRSADTNLVF---------IVNK 238
LR L+ + LI + L L + + D VF + N
Sbjct: 173 -----LR---DLYQTYHVLVGDLIKFSAET--LSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 239 SLWPQYHYL------LPF----------------DYRSGEYGTYNEGCSTAFIRVFAAL 275
S P YL P + GE +Y +G + + A+
Sbjct: 223 SNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV 281
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.11
Identities = 42/294 (14%), Positives = 81/294 (27%), Gaps = 82/294 (27%)
Query: 24 FWIYLHCCAIYGLLLVFTQAKLMTTL---YCFLLVMMSTLGNTIGA-----HRLWAHKTY 75
FW+ L C +L Q KL+ + + S + I + RL K Y
Sbjct: 185 FWLNLKNCNSPETVLEMLQ-KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 76 TAS-------WPLRLL---------LVTFQTLSLT-----GPVYDWVLDHR---LHH--- 108
+ L+T + +T LDH L
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 109 -----KYHGTDND-------KYN-FKRGFLWAHMGNRYHT----RNPAADNLHTQVDMRD 151
KY N + + + + T ++ D L T ++
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 152 VEEDPIVMWQYRLYWAFAII-LGVILPLNTPMEYWDESGVST--LFVVGFLRITL----- 203
+P +++ ++ +P W + S + V + +L
Sbjct: 364 NVLEPAEY--RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 204 -----SLHMVWLINSANILWGLDPLDKRSADTNLVFIVNKSLWPQYHYLLPFDY 252
S+ ++ L+ K + L ++S+ Y+ FD
Sbjct: 422 KESTISIPSIY----------LELKVKLENEYAL----HRSIVDHYNIPKTFDS 461
Score = 29.8 bits (66), Expect = 1.5
Identities = 16/110 (14%), Positives = 34/110 (30%), Gaps = 32/110 (29%)
Query: 68 RLWAHKTYTASWPLRLLLVTFQTLSL--------TGPVYDWVLDHRLHHKY----HGTDN 115
+W + +++ SL T + L+ ++ + H +
Sbjct: 394 LIWFDVIKSDV---MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450
Query: 116 DKYNFKRGFLW-------------AHMGNRYHTRNPAADNLHTQVDMRDV 152
D YN + F +H+G +H +N ++ R V
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIG--HHLKN--IEHPERMTLFRMV 496
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase,
transferase; HET: U2F; 2.0A {Escherichia coli} SCOP:
c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Length = 482
Score = 27.6 bits (62), Expect = 6.3
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 237 NKSLWPQYHYLLPF-DYRSGEYGTYNE 262
N LWP +HY L ++ + Y
Sbjct: 82 NAVLWPAFHYRLDLVQFQRPAWDGYLR 108
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase;
1.70A {Streptomyces hygroscopicus} PDB: 3t7d_A*
Length = 496
Score = 26.9 bits (60), Expect = 9.2
Identities = 7/40 (17%), Positives = 12/40 (30%), Gaps = 4/40 (10%)
Query: 237 NKSLWPQYHYLLPFDYRSGEYGTYNEGCSTAFIRV---FA 273
+W +Y + +G+ F R FA
Sbjct: 100 ANLMWAANNYGWDRWTQPS-FGSDAREGWADFGRFTRDFA 138
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.140 0.466
Gapped
Lambda K H
0.267 0.0717 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,103,939
Number of extensions: 293326
Number of successful extensions: 557
Number of sequences better than 10.0: 1
Number of HSP's gapped: 552
Number of HSP's successfully gapped: 10
Length of query: 324
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 230
Effective length of database: 4,077,219
Effective search space: 937760370
Effective search space used: 937760370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (25.8 bits)