BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13037
(1094 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Alanine
pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Bestatin
Length = 909
Score = 285 bits (730), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 152/345 (44%), Positives = 214/345 (62%), Gaps = 18/345 (5%)
Query: 74 PTKKSTDDQPGVNQTTVEFATTVPMSTYLVCFIVCDFDHLPSQDAKQGFPIKVYAREGQL 133
P ST N + EF TT MSTYL+ +IV +F + ++ A+ G I+++AR +
Sbjct: 185 PKGSSTPLAEDPNWSVTEFETTPVMSTYLLAYIVSEFQSV-NETAQNGVLIRIWARPNAI 243
Query: 134 E--HMEFAQKTAIAAINFYVEYFNISYPLPKLDLIAIPDFVSGAMEHWGLVTFREAAVLF 191
H +A +NF+ ++N SYPLPK D IA+PDF +GAME+WGLVT+RE A+LF
Sbjct: 244 AEGHGMYALNVTGPILNFFANHYNTSYPLPKSDQIALPDFNAGAMENWGLVTYRENALLF 303
Query: 192 KKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMGWWNDLWLNEGFASYMQYKALAKVEPTW 251
SSSI NK+RV +HELAH WFG+LVT+ WWNDLWLNEGFASY++Y EPTW
Sbjct: 304 DPQSSSISNKERVVTVIAHELAHQWFGNLVTLAWWNDLWLNEGFASYVEYLGADHAEPTW 363
Query: 252 EVDTMFLTDMLHSTLQLDQTLSSHPI---VQTVSNPDQITEIFDVISYQKGSSVIRMLEN 308
+ + + ++ + +D SSHP+ + V+ P QI+E+FD ISY KG+SVIRML N
Sbjct: 364 NLKDLIVPGDVYRVMAVDALASSHPLTTPAEEVNTPAQISEMFDSISYSKGASVIRMLSN 423
Query: 309 MMGEESFAHGVTSYLNEFQFKNAETNDLWSHLQKFANNM-------SVTSVMDTYTRQMG 361
+ E+ F G+ SYL+ F ++N DLW HLQK + +V ++MD +T QMG
Sbjct: 424 FLTEDLFKEGLASYLHAFAYQNTTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQMG 483
Query: 362 FPIITVK-KSGDQVTFTQQRYLSNPNASYNPDDSPFKYLWDVYIT 405
FP+ITV K+G+ +Q+ +L + ++ S F YLW V I+
Sbjct: 484 FPVITVDTKTGN---ISQKHFLLDSESNVT-RSSAFDYLWIVPIS 524
Score = 133 bits (335), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 58/90 (64%), Positives = 70/90 (77%)
Query: 629 DLIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTM 688
D IA+PDF +GAME+WGLVT+RE A+LF SSSI NK+RV +HELAH WFG+LVT+
Sbjct: 276 DQIALPDFNAGAMENWGLVTYRENALLFDPQSSSISNKERVVTVIAHELAHQWFGNLVTL 335
Query: 689 GWWNDLWLNEGFASYMQYKALAKVEPTWEV 718
WWNDLWLNEGFASY++Y EPTW +
Sbjct: 336 AWWNDLWLNEGFASYVEYLGADHAEPTWNL 365
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 73/159 (45%), Gaps = 2/159 (1%)
Query: 754 GCNFGAPSCLKKAADLLKNWF-DSGVKP-EADLRGLVYRYGMENVGEEEWKKMWAKFREE 811
C+ G P C A L W D P +LR +Y + G+++W W + ++
Sbjct: 696 ACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQA 755
Query: 812 SNPQEQIKMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQDYFTVIVMVAGNPKGLPVAWDY 871
E K+ L+ E LL ++L + IR QD + I +A N G P+AWD+
Sbjct: 756 QLVNEADKLRSALACSNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDF 815
Query: 872 VKKNWDYLVKRFGLNHRVFGRIIPSVCGKFTTQERLDEV 910
V+ NW L + +G F +I V +F+++ L ++
Sbjct: 816 VQSNWKKLFQDYGGGSFSFSNLIQGVTRRFSSEFELQQL 854
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 12/149 (8%)
Query: 461 TQPWELNSRLETTVIPKMYDLYLNPYL-----GKKLFTGTVKINIEVTNATGYIYLHKSS 515
++PW RL TT++P Y++ L PYL G +F G + T I +H
Sbjct: 3 SKPWN-RYRLPTTLLPDSYNVTLRPYLTPNADGLYIFKGKSIVRFLCQEPTDVIIIHSKK 61
Query: 516 L---TIEETTVFKGEDITPIDLLSTFDYAK-NEYWVITFKETIDPGS-YVLXXXXXXXXX 570
L T V +G + + + + + EY V+ K ++ PG Y +
Sbjct: 62 LNYTTQGHMVVLRGVGDSQVPEIDRTELVELTEYLVVHLKGSLQPGHMYEMESEFQGELA 121
Query: 571 XXXXXXYESMYMNYKNHKRLIATSKFEPT 599
Y S YM N K+++AT++ + T
Sbjct: 122 DDLAGFYRSEYME-GNVKKVLATTQMQST 149
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 63/161 (39%), Gaps = 19/161 (11%)
Query: 910 VLDARDRSNLLDDAFNLAESQMIEYSTTFNLMKYMSKEDHFVPWTVVYNKLSRLDDKLYS 969
V+ +R+ ++ D+FNLA + M+ + + +++ E ++PW + LS
Sbjct: 588 VIPVINRAQVIYDSFNLATAHMVPVTLALDNTLFLNGEKEYMPWQAALSSLSYFSLMFDR 647
Query: 970 TEGHEDFKLSRLDDKLYSTEGHEDFKLYIRCLLKDKLSEETWKVEN--KSYLEVNLKLVL 1027
+E + K Y + E + L K+ T + EN Y E+N
Sbjct: 648 SEVYGPM-------KKYLRKQVEPLFQHFETLTKNW----TERPENLMDQYSEINAI--- 693
Query: 1028 NDLGCNFGAPSCLKKAADLLKNWF-DSGVKP-EADLRGLVY 1066
C+ G P C A L W D P +LR +Y
Sbjct: 694 -STACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIY 733
>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Cleaved Poly-Alanine
pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Substance P
Length = 908
Score = 285 bits (730), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 152/345 (44%), Positives = 214/345 (62%), Gaps = 18/345 (5%)
Query: 74 PTKKSTDDQPGVNQTTVEFATTVPMSTYLVCFIVCDFDHLPSQDAKQGFPIKVYAREGQL 133
P ST N + EF TT MSTYL+ +IV +F + ++ A+ G I+++AR +
Sbjct: 184 PKGSSTPLAEDPNWSVTEFETTPVMSTYLLAYIVSEFQSV-NETAQNGVLIRIWARPNAI 242
Query: 134 E--HMEFAQKTAIAAINFYVEYFNISYPLPKLDLIAIPDFVSGAMEHWGLVTFREAAVLF 191
H +A +NF+ ++N SYPLPK D IA+PDF +GAME+WGLVT+RE A+LF
Sbjct: 243 AEGHGMYALNVTGPILNFFANHYNTSYPLPKSDQIALPDFNAGAMENWGLVTYRENALLF 302
Query: 192 KKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMGWWNDLWLNEGFASYMQYKALAKVEPTW 251
SSSI NK+RV +HELAH WFG+LVT+ WWNDLWLNEGFASY++Y EPTW
Sbjct: 303 DPQSSSISNKERVVTVIAHELAHQWFGNLVTLAWWNDLWLNEGFASYVEYLGADHAEPTW 362
Query: 252 EVDTMFLTDMLHSTLQLDQTLSSHPI---VQTVSNPDQITEIFDVISYQKGSSVIRMLEN 308
+ + + ++ + +D SSHP+ + V+ P QI+E+FD ISY KG+SVIRML N
Sbjct: 363 NLKDLIVPGDVYRVMAVDALASSHPLTTPAEEVNTPAQISEMFDSISYSKGASVIRMLSN 422
Query: 309 MMGEESFAHGVTSYLNEFQFKNAETNDLWSHLQKFANNM-------SVTSVMDTYTRQMG 361
+ E+ F G+ SYL+ F ++N DLW HLQK + +V ++MD +T QMG
Sbjct: 423 FLTEDLFKEGLASYLHAFAYQNTTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQMG 482
Query: 362 FPIITVK-KSGDQVTFTQQRYLSNPNASYNPDDSPFKYLWDVYIT 405
FP+ITV K+G+ +Q+ +L + ++ S F YLW V I+
Sbjct: 483 FPVITVDTKTGN---ISQKHFLLDSESNVT-RSSAFDYLWIVPIS 523
Score = 133 bits (335), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 58/90 (64%), Positives = 70/90 (77%)
Query: 629 DLIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTM 688
D IA+PDF +GAME+WGLVT+RE A+LF SSSI NK+RV +HELAH WFG+LVT+
Sbjct: 275 DQIALPDFNAGAMENWGLVTYRENALLFDPQSSSISNKERVVTVIAHELAHQWFGNLVTL 334
Query: 689 GWWNDLWLNEGFASYMQYKALAKVEPTWEV 718
WWNDLWLNEGFASY++Y EPTW +
Sbjct: 335 AWWNDLWLNEGFASYVEYLGADHAEPTWNL 364
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 73/159 (45%), Gaps = 2/159 (1%)
Query: 754 GCNFGAPSCLKKAADLLKNWF-DSGVKP-EADLRGLVYRYGMENVGEEEWKKMWAKFREE 811
C+ G P C A L W D P +LR +Y + G+++W W + ++
Sbjct: 695 ACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQA 754
Query: 812 SNPQEQIKMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQDYFTVIVMVAGNPKGLPVAWDY 871
E K+ L+ E LL ++L + IR QD + I +A N G P+AWD+
Sbjct: 755 QLVNEADKLRSALACSNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDF 814
Query: 872 VKKNWDYLVKRFGLNHRVFGRIIPSVCGKFTTQERLDEV 910
V+ NW L + +G F +I V +F+++ L ++
Sbjct: 815 VQSNWKKLFQDYGGGSFSFSNLIQGVTRRFSSEFELQQL 853
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 12/149 (8%)
Query: 461 TQPWELNSRLETTVIPKMYDLYLNPYL-----GKKLFTGTVKINIEVTNATGYIYLHKSS 515
++PW RL TT++P Y++ L PYL G +F G + T I +H
Sbjct: 2 SKPWN-RYRLPTTLLPDSYNVTLRPYLTPNADGLYIFKGKSIVRFLCQEPTDVIIIHSKK 60
Query: 516 L---TIEETTVFKGEDITPIDLLSTFDYAK-NEYWVITFKETIDPGS-YVLXXXXXXXXX 570
L T V +G + + + + + EY V+ K ++ PG Y +
Sbjct: 61 LNYTTQGHMVVLRGVGDSQVPEIDRTELVELTEYLVVHLKGSLQPGHMYEMESEFQGELA 120
Query: 571 XXXXXXYESMYMNYKNHKRLIATSKFEPT 599
Y S YM N K+++AT++ + T
Sbjct: 121 DDLAGFYRSEYME-GNVKKVLATTQMQST 148
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 63/161 (39%), Gaps = 19/161 (11%)
Query: 910 VLDARDRSNLLDDAFNLAESQMIEYSTTFNLMKYMSKEDHFVPWTVVYNKLSRLDDKLYS 969
V+ +R+ ++ D+FNLA + M+ + + +++ E ++PW + LS
Sbjct: 587 VIPVINRAQVIYDSFNLATAHMVPVTLALDNTLFLNGEKEYMPWQAALSSLSYFSLMFDR 646
Query: 970 TEGHEDFKLSRLDDKLYSTEGHEDFKLYIRCLLKDKLSEETWKVEN--KSYLEVNLKLVL 1027
+E + K Y + E + L K+ T + EN Y E+N
Sbjct: 647 SEVYGPM-------KKYLRKQVEPLFQHFETLTKNW----TERPENLMDQYSEINAI--- 692
Query: 1028 NDLGCNFGAPSCLKKAADLLKNWF-DSGVKP-EADLRGLVY 1066
C+ G P C A L W D P +LR +Y
Sbjct: 693 -STACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIY 732
>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
pdb|4F5C|B Chain B, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
Length = 959
Score = 285 bits (729), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 152/345 (44%), Positives = 214/345 (62%), Gaps = 18/345 (5%)
Query: 74 PTKKSTDDQPGVNQTTVEFATTVPMSTYLVCFIVCDFDHLPSQDAKQGFPIKVYAREGQL 133
P ST N + EF TT MSTYL+ +IV +F + ++ A+ G I+++AR +
Sbjct: 228 PKGSSTPLAEDPNWSVTEFETTPVMSTYLLAYIVSEFQSV-NETAQNGVLIRIWARPNAI 286
Query: 134 E--HMEFAQKTAIAAINFYVEYFNISYPLPKLDLIAIPDFVSGAMEHWGLVTFREAAVLF 191
H +A +NF+ ++N SYPLPK D IA+PDF +GAME+WGLVT+RE A+LF
Sbjct: 287 AEGHGMYALNVTGPILNFFANHYNTSYPLPKSDQIALPDFNAGAMENWGLVTYRENALLF 346
Query: 192 KKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMGWWNDLWLNEGFASYMQYKALAKVEPTW 251
SSSI NK+RV +HELAH WFG+LVT+ WWNDLWLNEGFASY++Y EPTW
Sbjct: 347 DPQSSSISNKERVVTVIAHELAHQWFGNLVTLAWWNDLWLNEGFASYVEYLGADHAEPTW 406
Query: 252 EVDTMFLTDMLHSTLQLDQTLSSHPI---VQTVSNPDQITEIFDVISYQKGSSVIRMLEN 308
+ + + ++ + +D SSHP+ + V+ P QI+E+FD ISY KG+SVIRML N
Sbjct: 407 NLKDLIVPGDVYRVMAVDALASSHPLTTPAEEVNTPAQISEMFDSISYSKGASVIRMLSN 466
Query: 309 MMGEESFAHGVTSYLNEFQFKNAETNDLWSHLQKFANNM-------SVTSVMDTYTRQMG 361
+ E+ F G+ SYL+ F ++N DLW HLQK + +V ++MD +T QMG
Sbjct: 467 FLTEDLFKEGLASYLHAFAYQNTTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQMG 526
Query: 362 FPIITVK-KSGDQVTFTQQRYLSNPNASYNPDDSPFKYLWDVYIT 405
FP+ITV K+G+ +Q+ +L + ++ S F YLW V I+
Sbjct: 527 FPVITVDTKTGN---ISQKHFLLDSESNVT-RSSAFDYLWIVPIS 567
Score = 133 bits (335), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 58/90 (64%), Positives = 70/90 (77%)
Query: 629 DLIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTM 688
D IA+PDF +GAME+WGLVT+RE A+LF SSSI NK+RV +HELAH WFG+LVT+
Sbjct: 319 DQIALPDFNAGAMENWGLVTYRENALLFDPQSSSISNKERVVTVIAHELAHQWFGNLVTL 378
Query: 689 GWWNDLWLNEGFASYMQYKALAKVEPTWEV 718
WWNDLWLNEGFASY++Y EPTW +
Sbjct: 379 AWWNDLWLNEGFASYVEYLGADHAEPTWNL 408
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 73/159 (45%), Gaps = 2/159 (1%)
Query: 754 GCNFGAPSCLKKAADLLKNWF-DSGVKP-EADLRGLVYRYGMENVGEEEWKKMWAKFREE 811
C+ G P C A L W D P +LR +Y + G+++W W + ++
Sbjct: 739 ACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQA 798
Query: 812 SNPQEQIKMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQDYFTVIVMVAGNPKGLPVAWDY 871
E K+ L+ E LL ++L + IR QD + I +A N G P+AWD+
Sbjct: 799 QLVNEADKLRSALACSNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDF 858
Query: 872 VKKNWDYLVKRFGLNHRVFGRIIPSVCGKFTTQERLDEV 910
V+ NW L + +G F +I V +F+++ L ++
Sbjct: 859 VQSNWKKLFQDYGGGSFSFSNLIQGVTRRFSSEFELQQL 897
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 68/166 (40%), Gaps = 12/166 (7%)
Query: 444 GSTAPKSFKNDSTVSNPTQPWELNSRLETTVIPKMYDLYLNPYL-----GKKLFTGTVKI 498
T+P + + ++PW RL TT++P Y++ L PYL G +F G +
Sbjct: 29 APTSPTITTTAAITLDQSKPWN-RYRLPTTLLPDSYNVTLRPYLTPNADGLYIFKGKSIV 87
Query: 499 NIEVTNATGYIYLHKSSL---TIEETTVFKGEDITPIDLLSTFDYAK-NEYWVITFKETI 554
T I +H L T V +G + + + + + EY V+ K ++
Sbjct: 88 RFICQEPTDVIIIHSKKLNYTTQGHMVVLRGVGDSQVPEIDRTELVELTEYLVVHLKGSL 147
Query: 555 DPGS-YVLXXXXXXXXXXXXXXXYESMYMNYKNHKRLIATSKFEPT 599
PG Y + Y S YM N K+++AT++ + T
Sbjct: 148 QPGHMYEMESEFQGELADDLAGFYRSEYME-GNVKKVLATTQMQST 192
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/159 (20%), Positives = 62/159 (38%), Gaps = 15/159 (9%)
Query: 910 VLDARDRSNLLDDAFNLAESQMIEYSTTFNLMKYMSKEDHFVPWTVVYNKLSRLDDKLYS 969
V+ +R+ ++ D+FNLA + M+ + + +++ E ++PW + LS
Sbjct: 631 VIPVINRAQVIYDSFNLATAHMVPVTLALDNTLFLNGEKEYMPWQAALSSLSYFSLMFDR 690
Query: 970 TEGHEDFKLSRLDDKLYSTEGHEDFKLYIRCLLKDKLSEETWKVENKSYLEVNLKLVLND 1029
+E + K Y + E + L K+ W ++ ++ ++
Sbjct: 691 SEVYGPM-------KKYLRKQVEPLFQHFETLTKN------WTERPENLMDQYSEINAIS 737
Query: 1030 LGCNFGAPSCLKKAADLLKNWF-DSGVKP-EADLRGLVY 1066
C+ G P C A L W D P +LR +Y
Sbjct: 738 TACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIY 776
>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Poly- Alanine
Length = 908
Score = 284 bits (727), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 151/345 (43%), Positives = 214/345 (62%), Gaps = 18/345 (5%)
Query: 74 PTKKSTDDQPGVNQTTVEFATTVPMSTYLVCFIVCDFDHLPSQDAKQGFPIKVYAREGQL 133
P ST N + EF TT MSTYL+ +IV +F + ++ A+ G I+++AR +
Sbjct: 184 PKGSSTPLAEDPNWSVTEFETTPVMSTYLLAYIVSEFQSV-NETAQNGVLIRIWARPNAI 242
Query: 134 E--HMEFAQKTAIAAINFYVEYFNISYPLPKLDLIAIPDFVSGAMEHWGLVTFREAAVLF 191
H +A +NF+ ++N SYPLPK D IA+PDF +GAME+WGLVT+RE A+LF
Sbjct: 243 AEGHGMYALNVTGPILNFFANHYNTSYPLPKSDQIALPDFNAGAMENWGLVTYRENALLF 302
Query: 192 KKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMGWWNDLWLNEGFASYMQYKALAKVEPTW 251
SSSI NK+RV +H+LAH WFG+LVT+ WWNDLWLNEGFASY++Y EPTW
Sbjct: 303 DPQSSSISNKERVVTVIAHQLAHQWFGNLVTLAWWNDLWLNEGFASYVEYLGADHAEPTW 362
Query: 252 EVDTMFLTDMLHSTLQLDQTLSSHPI---VQTVSNPDQITEIFDVISYQKGSSVIRMLEN 308
+ + + ++ + +D SSHP+ + V+ P QI+E+FD ISY KG+SVIRML N
Sbjct: 363 NLKDLIVPGDVYRVMAVDALASSHPLTTPAEEVNTPAQISEMFDSISYSKGASVIRMLSN 422
Query: 309 MMGEESFAHGVTSYLNEFQFKNAETNDLWSHLQKFANNM-------SVTSVMDTYTRQMG 361
+ E+ F G+ SYL+ F ++N DLW HLQK + +V ++MD +T QMG
Sbjct: 423 FLTEDLFKEGLASYLHAFAYQNTTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQMG 482
Query: 362 FPIITVK-KSGDQVTFTQQRYLSNPNASYNPDDSPFKYLWDVYIT 405
FP+ITV K+G+ +Q+ +L + ++ S F YLW V I+
Sbjct: 483 FPVITVDTKTGN---ISQKHFLLDSESNVT-RSSAFDYLWIVPIS 523
Score = 132 bits (332), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 57/90 (63%), Positives = 70/90 (77%)
Query: 629 DLIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTM 688
D IA+PDF +GAME+WGLVT+RE A+LF SSSI NK+RV +H+LAH WFG+LVT+
Sbjct: 275 DQIALPDFNAGAMENWGLVTYRENALLFDPQSSSISNKERVVTVIAHQLAHQWFGNLVTL 334
Query: 689 GWWNDLWLNEGFASYMQYKALAKVEPTWEV 718
WWNDLWLNEGFASY++Y EPTW +
Sbjct: 335 AWWNDLWLNEGFASYVEYLGADHAEPTWNL 364
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 73/159 (45%), Gaps = 2/159 (1%)
Query: 754 GCNFGAPSCLKKAADLLKNWF-DSGVKP-EADLRGLVYRYGMENVGEEEWKKMWAKFREE 811
C+ G P C A L W D P +LR +Y + G+++W W + ++
Sbjct: 695 ACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQA 754
Query: 812 SNPQEQIKMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQDYFTVIVMVAGNPKGLPVAWDY 871
E K+ L+ E LL ++L + IR QD + I +A N G P+AWD+
Sbjct: 755 QLVNEADKLRSALACSNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDF 814
Query: 872 VKKNWDYLVKRFGLNHRVFGRIIPSVCGKFTTQERLDEV 910
V+ NW L + +G F +I V +F+++ L ++
Sbjct: 815 VQSNWKKLFQDYGGGSFSFSNLIQGVTRRFSSEFELQQL 853
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 12/149 (8%)
Query: 461 TQPWELNSRLETTVIPKMYDLYLNPYL-----GKKLFTGTVKINIEVTNATGYIYLHKSS 515
++PW RL TT++P Y++ L PYL G +F G + T I +H
Sbjct: 2 SKPWN-RYRLPTTLLPDSYNVTLRPYLTPNADGLYIFKGKSIVRFLCQEPTDVIIIHSKK 60
Query: 516 L---TIEETTVFKGEDITPIDLLSTFDYAK-NEYWVITFKETIDPGS-YVLXXXXXXXXX 570
L T V +G + + + + + EY V+ K ++ PG Y +
Sbjct: 61 LNYTTQGHMVVLRGVGDSQVPEIDRTELVELTEYLVVHLKGSLQPGHMYEMESEFQGELA 120
Query: 571 XXXXXXYESMYMNYKNHKRLIATSKFEPT 599
Y S YM N K+++AT++ + T
Sbjct: 121 DDLAGFYRSEYME-GNVKKVLATTQMQST 148
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 63/161 (39%), Gaps = 19/161 (11%)
Query: 910 VLDARDRSNLLDDAFNLAESQMIEYSTTFNLMKYMSKEDHFVPWTVVYNKLSRLDDKLYS 969
V+ +R+ ++ D+FNLA + M+ + + +++ E ++PW + LS
Sbjct: 587 VIPVINRAQVIYDSFNLATAHMVPVTLALDNTLFLNGEKEYMPWQAALSSLSYFSLMFDR 646
Query: 970 TEGHEDFKLSRLDDKLYSTEGHEDFKLYIRCLLKDKLSEETWKVEN--KSYLEVNLKLVL 1027
+E + K Y + E + L K+ T + EN Y E+N
Sbjct: 647 SEVYGPM-------KKYLRKQVEPLFQHFETLTKNW----TERPENLMDQYSEINAI--- 692
Query: 1028 NDLGCNFGAPSCLKKAADLLKNWF-DSGVKP-EADLRGLVY 1066
C+ G P C A L W D P +LR +Y
Sbjct: 693 -STACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIY 732
>pdb|4FYQ|A Chain A, Human Aminopeptidase N (Cd13)
pdb|4FYR|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Bestatin
pdb|4FYS|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Angiotensin
Iv
pdb|4FYT|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Amastatin
Length = 903
Score = 283 bits (723), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 148/343 (43%), Positives = 211/343 (61%), Gaps = 15/343 (4%)
Query: 74 PTKKSTDDQPGVNQTTVEFATTVPMSTYLVCFIVCDFDHLPSQDAKQGFPIKVYAREGQL 133
P ST N EF TT MSTYL+ FIV +FD++ Q A G I+++AR +
Sbjct: 187 PKGPSTPLPEDPNWNVTEFHTTPKMSTYLLAFIVSEFDYVEKQ-ASNGVLIRIWARPSAI 245
Query: 134 E--HMEFAQKTAIAAINFYVEYFNISYPLPKLDLIAIPDFVSGAMEHWGLVTFREAAVLF 191
H ++A +NF+ +++ YPLPK D I +PDF +GAME+WGLVT+RE ++LF
Sbjct: 246 AAGHGDYALNVTGPILNFFAGHYDTPYPLPKSDQIGLPDFNAGAMENWGLVTYRENSLLF 305
Query: 192 KKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMGWWNDLWLNEGFASYMQYKALAKVEPTW 251
SSS NK+RV +HELAH WFG+LVT+ WWNDLWLNEGFASY++Y EPTW
Sbjct: 306 DPLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEYLGADYAEPTW 365
Query: 252 EVDTMFLTDMLHSTLQLDQTLSSHPI---VQTVSNPDQITEIFDVISYQKGSSVIRMLEN 308
+ + + + ++ + +D SSHP+ ++ P QI+E+FD ISY KG+SV+RML +
Sbjct: 366 NLKDLMVLNDVYRVMAVDALASSHPLSTPASEINTPAQISELFDAISYSKGASVLRMLSS 425
Query: 309 MMGEESFAHGVTSYLNEFQFKNAETNDLWSHLQKFANNMS------VTSVMDTYTRQMGF 362
+ E+ F G+ SYL+ F ++N +LW HLQ+ NN S V +M+ +T QMGF
Sbjct: 426 FLSEDVFKQGLASYLHTFAYQNTIYLNLWDHLQEAVNNRSIQLPTTVRDIMNRWTLQMGF 485
Query: 363 PIITVKKSGDQVTFTQQRYLSNPNASYNPDDSPFKYLWDVYIT 405
P+ITV S T +Q+ +L +P+++ S F Y+W V IT
Sbjct: 486 PVITVDTSTG--TLSQEHFLLDPDSNVT-RPSEFNYVWIVPIT 525
Score = 125 bits (314), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 55/90 (61%), Positives = 68/90 (75%)
Query: 629 DLIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTM 688
D I +PDF +GAME+WGLVT+RE ++LF SSS NK+RV +HELAH WFG+LVT+
Sbjct: 278 DQIGLPDFNAGAMENWGLVTYRENSLLFDPLSSSSSNKERVVTVIAHELAHQWFGNLVTI 337
Query: 689 GWWNDLWLNEGFASYMQYKALAKVEPTWEV 718
WWNDLWLNEGFASY++Y EPTW +
Sbjct: 338 EWWNDLWLNEGFASYVEYLGADYAEPTWNL 367
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 2/159 (1%)
Query: 754 GCNFGAPSCLKKAADLLKNWFDSGVKPEAD--LRGLVYRYGMENVGEEEWKKMWAKFREE 811
C+ G P C + + L K W ++ LR VY + GEEEW W +FR
Sbjct: 696 ACSNGVPECEEMVSGLFKQWMENPNNNPIHPNLRSTVYCNAIAQGGEEEWDFAWEQFRNA 755
Query: 812 SNPQEQIKMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQDYFTVIVMVAGNPKGLPVAWDY 871
+ E K+ L+ KE +L ++L + IR QD + I+ + N G + WD+
Sbjct: 756 TLVNEADKLRAALACSKELWILNRYLSYTLNPDLIRKQDATSTIISITNNVIGQGLVWDF 815
Query: 872 VKKNWDYLVKRFGLNHRVFGRIIPSVCGKFTTQERLDEV 910
V+ NW L +G F +I +V +F+T+ L ++
Sbjct: 816 VQSNWKKLFNDYGGGSFSFSNLIQAVTRRFSTEYELQQL 854
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/182 (20%), Positives = 74/182 (40%), Gaps = 18/182 (9%)
Query: 900 KFTTQ-ERLDEVLDARDRSNLLDDAFNLAESQMIEYSTTFNLMKYMSKEDHFVPWTVVYN 958
K TQ +R + +R+ +++DAFNLA + + + N ++ +E ++PW +
Sbjct: 577 KIQTQLQRDHSAIPVINRAQIINDAFNLASAHKVPVTLALNNTLFLIEERQYMPWEAALS 636
Query: 959 KLSRLDDKLYSTEGHEDFKLSRLDDKLYSTEGHEDFKLYIRCLLKDKLSEETWKVENKSY 1018
LS FKL ++Y + K + + + W+ ++
Sbjct: 637 SLSY-------------FKLMFDRSEVYGPMKNYLKKQVTPLFIHFRNNTNNWREIPENL 683
Query: 1019 LEVNLKLVLNDLGCNFGAPSCLKKAADLLKNWFD--SGVKPEADLRGLVYRYVQALPRRG 1076
++ ++ C+ G P C + + L K W + + +LR V Y A+ + G
Sbjct: 684 MDQYSEVNAISTACSNGVPECEEMVSGLFKQWMENPNNNPIHPNLRSTV--YCNAIAQGG 741
Query: 1077 NE 1078
E
Sbjct: 742 EE 743
>pdb|3MDJ|A Chain A, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|B Chain B, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|C Chain C, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
Length = 921
Score = 265 bits (678), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 144/386 (37%), Positives = 209/386 (54%), Gaps = 42/386 (10%)
Query: 74 PTKKSTDDQPGVNQTTV-------EFATTVPMSTYLVCFIVCDFDHLPSQDAKQGFPIKV 126
P + + P V TV F TV MSTYLV FI+ DF+ + S+ K G + V
Sbjct: 175 PRHLAISNMPLVKSVTVAEGLIEDHFDVTVKMSTYLVAFIISDFESV-SKITKSGVKVSV 233
Query: 127 YAREGQLEHMEFAQKTAIAAINFYVEYFNISYPLPKLDLIAIPDFVSGAMEHWGLVTFRE 186
YA ++ ++A A+ + FY +YF+I YPLPK DL AIPDF SGAME+WGL T+RE
Sbjct: 234 YAVPDKINQADYALDAAVTLLEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENWGLTTYRE 293
Query: 187 AAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMGWWNDLWLNEGFASYMQYKALAK 246
+A+LF SS +K + MT +HELAH WFG+LVTM WWNDLWLNEGFA +M++ +++
Sbjct: 294 SALLFDAEKSSASSKLDITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSV 353
Query: 247 VEPTWEVDTMFLTDMLHSTLQLDQTLSSHPIVQTVSNPDQITEIFDVISYQKGSSVIRML 306
P +V F + +++D SSHP+ V NP QI E+FD +SY KG+ ++ ML
Sbjct: 354 THPELKVGDYFFGKCFDA-MEVDALNSSHPVSTPVENPAQIREMFDDVSYDKGACILNML 412
Query: 307 ENMMGEESFAHGVTSYLNEFQFKNAETNDLWSHLQKFA---------------------- 344
+ ++F G+ YL + +KN + DLW +
Sbjct: 413 REYLSADAFKSGIVQYLQKHSYKNTKNEDLWDSMASICPTDGVKGMDGFCSRSQHSSSSS 472
Query: 345 ----NNMSVTSVMDTYTRQMGFPIITVKKSGDQVTFTQQRYLSNPNASYNPDDSPFKYLW 400
+ V ++M+T+T Q GFP+IT+ G V Q+ Y+ + + PD YLW
Sbjct: 473 HWHQERVDVKTMMNTWTLQRGFPLITITVRGRNVHMKQEHYMKGSDGA--PDTG---YLW 527
Query: 401 DVYITMFTSSDPSHTLHTWLYRNMSE 426
V +T TS S +H +L + ++
Sbjct: 528 HVPLTFITSK--SDMVHRFLLKTKTD 551
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 69/91 (75%)
Query: 628 EDLIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVT 687
+DL AIPDF SGAME+WGL T+RE+A+LF SS +K + MT +HELAH WFG+LVT
Sbjct: 270 QDLAAIPDFQSGAMENWGLTTYRESALLFDAEKSSASSKLDITMTVAHELAHQWFGNLVT 329
Query: 688 MGWWNDLWLNEGFASYMQYKALAKVEPTWEV 718
M WWNDLWLNEGFA +M++ +++ P +V
Sbjct: 330 MEWWNDLWLNEGFAKFMEFVSVSVTHPELKV 360
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 112/219 (51%), Gaps = 8/219 (3%)
Query: 696 LNEGFASY--MQYKALAKVEPTWEVLYIRCLLKDKLSEETWKVENKSYLEVNLKLVLNDL 753
LNE Y M+ + + +VE ++ IR LL+D + ++TW E S E L+ L L
Sbjct: 641 LNELIPMYKLMEKRDMNEVETQFKAFLIR-LLRDLIDKQTWTDEG-SVSERMLRSELLLL 698
Query: 754 GCNFGAPSCLKKAADLLKNWFDSG--VKPEADLRGLVYRYGMENVGEEEWKKMWAKFREE 811
C C+++A + W +S + D+ V+ G ++ E W +++K++
Sbjct: 699 ACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGAQST--EGWDFLYSKYQFS 756
Query: 812 SNPQEQIKMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQDYFTVIVMVAGNPKGLPVAWDY 871
+ E+ ++ L + + L+ L+ + I++Q++ ++ ++ NP G P+AW +
Sbjct: 757 LSSTEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQILTLIGRNPVGYPLAWQF 816
Query: 872 VKKNWDYLVKRFGLNHRVFGRIIPSVCGKFTTQERLDEV 910
++KNW+ LV++F L ++ +F+T+ RL+EV
Sbjct: 817 LRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRTRLEEV 855
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 59/139 (42%), Gaps = 3/139 (2%)
Query: 463 PWELNSRLETTVIPKMYDLYLNPYLGKKLFTGTVKINIEVTNATGYIYLHKSSLTIEETT 522
PW RL VIP YDL ++ L F GT K+ I + T I LH L I T
Sbjct: 12 PWN-KIRLPEYVIPVHYDLLIHANLTTLTFWGTTKVEITASQPTSTIILHSHHLQISRAT 70
Query: 523 VFKGE-DITPIDLLSTFDYAKNEYWVITFKETIDPG-SYVLXXXXXXXXXXXXXXXYESM 580
+ KG + + L ++ + E + E + G Y + Y+S
Sbjct: 71 LRKGAGERLSEEPLQVLEHPRQEQIALLAPEPLLVGLPYTVVIHYAGNLSETFHGFYKST 130
Query: 581 YMNYKNHKRLIATSKFEPT 599
Y + R++A+++FEPT
Sbjct: 131 YRTKEGELRILASTQFEPT 149
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 62/144 (43%), Gaps = 16/144 (11%)
Query: 910 VLDARDRSNLLDDAFNLAESQMIEYSTTFNLMKYMSKEDHFVPWTVVYNKLSRLDDKLYS 969
+ + DR++L+++AF L + +L Y+ E +P V+ L+ L
Sbjct: 594 AVSSNDRASLINNAFQLVSIGKLSIEKALDLSLYLKHETEIMP---VFQGLNEL------ 644
Query: 970 TEGHEDFKLSRLDDKLYSTEGHEDFKLYIRCLLKDKLSEETWKVENKSYLEVNLKLVLND 1029
+ +L +K E FK ++ LL+D + ++TW E S E L+ L
Sbjct: 645 ------IPMYKLMEKRDMNEVETQFKAFLIRLLRDLIDKQTWTDEG-SVSERMLRSELLL 697
Query: 1030 LGCNFGAPSCLKKAADLLKNWFDS 1053
L C C+++A + W +S
Sbjct: 698 LACVHNYQPCVQRAEGYFRKWKES 721
>pdb|3QNF|A Chain A, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|B Chain B, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|C Chain C, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
Length = 954
Score = 265 bits (677), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 144/386 (37%), Positives = 209/386 (54%), Gaps = 42/386 (10%)
Query: 74 PTKKSTDDQPGVNQTTV-------EFATTVPMSTYLVCFIVCDFDHLPSQDAKQGFPIKV 126
P + + P V TV F TV MSTYLV FI+ DF+ + S+ K G + V
Sbjct: 217 PRHLAISNMPLVKSVTVAEGLIEDHFDVTVKMSTYLVAFIISDFESV-SKITKSGVKVSV 275
Query: 127 YAREGQLEHMEFAQKTAIAAINFYVEYFNISYPLPKLDLIAIPDFVSGAMEHWGLVTFRE 186
YA ++ ++A A+ + FY +YF+I YPLPK DL AIPDF SGAME+WGL T+RE
Sbjct: 276 YAVPDKINQADYALDAAVTLLEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENWGLTTYRE 335
Query: 187 AAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMGWWNDLWLNEGFASYMQYKALAK 246
+A+LF SS +K + MT +HELAH WFG+LVTM WWNDLWLNEGFA +M++ +++
Sbjct: 336 SALLFDAEKSSASSKLGITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSV 395
Query: 247 VEPTWEVDTMFLTDMLHSTLQLDQTLSSHPIVQTVSNPDQITEIFDVISYQKGSSVIRML 306
P +V F + +++D SSHP+ V NP QI E+FD +SY KG+ ++ ML
Sbjct: 396 THPELKVGDYFFGKCFDA-MEVDALNSSHPVSTPVENPAQIREMFDDVSYDKGACILNML 454
Query: 307 ENMMGEESFAHGVTSYLNEFQFKNAETNDLWSHLQKFA---------------------- 344
+ ++F G+ YL + +KN + DLW +
Sbjct: 455 REYLSADAFKSGIVQYLQKHSYKNTKNEDLWDSMASICPTDGVKGMDGFCSRSQHSSSSS 514
Query: 345 ----NNMSVTSVMDTYTRQMGFPIITVKKSGDQVTFTQQRYLSNPNASYNPDDSPFKYLW 400
+ V ++M+T+T Q GFP+IT+ G V Q+ Y+ + + PD YLW
Sbjct: 515 HWHQEGVDVKTMMNTWTLQKGFPLITITVRGRNVHMKQEHYMKGSDGA--PDTG---YLW 569
Query: 401 DVYITMFTSSDPSHTLHTWLYRNMSE 426
V +T TS S +H +L + ++
Sbjct: 570 HVPLTFITSK--SDMVHRFLLKTKTD 593
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 69/91 (75%)
Query: 628 EDLIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVT 687
+DL AIPDF SGAME+WGL T+RE+A+LF SS +K + MT +HELAH WFG+LVT
Sbjct: 312 QDLAAIPDFQSGAMENWGLTTYRESALLFDAEKSSASSKLGITMTVAHELAHQWFGNLVT 371
Query: 688 MGWWNDLWLNEGFASYMQYKALAKVEPTWEV 718
M WWNDLWLNEGFA +M++ +++ P +V
Sbjct: 372 MEWWNDLWLNEGFAKFMEFVSVSVTHPELKV 402
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 112/219 (51%), Gaps = 8/219 (3%)
Query: 696 LNEGFASY--MQYKALAKVEPTWEVLYIRCLLKDKLSEETWKVENKSYLEVNLKLVLNDL 753
LNE Y M+ + + +VE ++ IR LL+D + ++TW E S E L+ L L
Sbjct: 683 LNELIPMYKLMEKRDMNEVETQFKAFLIR-LLRDLIDKQTWTDEG-SVSERMLRSQLLLL 740
Query: 754 GCNFGAPSCLKKAADLLKNWFDSG--VKPEADLRGLVYRYGMENVGEEEWKKMWAKFREE 811
C C+++A + W +S + D+ V+ G ++ E W +++K++
Sbjct: 741 ACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGAQST--EGWDFLYSKYQFS 798
Query: 812 SNPQEQIKMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQDYFTVIVMVAGNPKGLPVAWDY 871
+ E+ ++ L + + L+ L+ + I++Q++ ++ ++ NP G P+AW +
Sbjct: 799 LSSTEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQILTLIGRNPVGYPLAWQF 858
Query: 872 VKKNWDYLVKRFGLNHRVFGRIIPSVCGKFTTQERLDEV 910
++KNW+ LV++F L ++ +F+T+ RL+EV
Sbjct: 859 LRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRTRLEEV 897
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 59/139 (42%), Gaps = 3/139 (2%)
Query: 463 PWELNSRLETTVIPKMYDLYLNPYLGKKLFTGTVKINIEVTNATGYIYLHKSSLTIEETT 522
PW RL VIP YDL ++ L F GT K+ I + T I LH L I T
Sbjct: 54 PWN-KIRLPEYVIPVHYDLLIHANLTTLTFWGTTKVEITASQPTSTIILHSHHLQISRAT 112
Query: 523 VFKGE-DITPIDLLSTFDYAKNEYWVITFKETIDPG-SYVLXXXXXXXXXXXXXXXYESM 580
+ KG + + L ++ + E + E + G Y + Y+S
Sbjct: 113 LRKGAGERLSEEPLQVLEHPRQEQIALLAPEPLLVGLPYTVVIHYAGNLSETFHGFYKST 172
Query: 581 YMNYKNHKRLIATSKFEPT 599
Y + R++A+++FEPT
Sbjct: 173 YRTKEGELRILASTQFEPT 191
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 62/144 (43%), Gaps = 16/144 (11%)
Query: 910 VLDARDRSNLLDDAFNLAESQMIEYSTTFNLMKYMSKEDHFVPWTVVYNKLSRLDDKLYS 969
+ + DR++L+++AF L + +L Y+ E +P V+ L+ L
Sbjct: 636 AVSSNDRASLINNAFQLVSIGKLSIEKALDLSLYLKHETEIMP---VFQGLNEL------ 686
Query: 970 TEGHEDFKLSRLDDKLYSTEGHEDFKLYIRCLLKDKLSEETWKVENKSYLEVNLKLVLND 1029
+ +L +K E FK ++ LL+D + ++TW E S E L+ L
Sbjct: 687 ------IPMYKLMEKRDMNEVETQFKAFLIRLLRDLIDKQTWTDEG-SVSERMLRSQLLL 739
Query: 1030 LGCNFGAPSCLKKAADLLKNWFDS 1053
L C C+++A + W +S
Sbjct: 740 LACVHNYQPCVQRAEGYFRKWKES 763
>pdb|2YD0|A Chain A, Crystal Structure Of The Soluble Domain Of Human
Endoplasmic Reticulum Aminopeptidase 1 Erap1
Length = 897
Score = 265 bits (676), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 144/386 (37%), Positives = 209/386 (54%), Gaps = 42/386 (10%)
Query: 74 PTKKSTDDQPGVNQTTV-------EFATTVPMSTYLVCFIVCDFDHLPSQDAKQGFPIKV 126
P + + P V TV F TV MSTYLV FI+ DF+ + S+ K G + V
Sbjct: 166 PRHLAISNMPLVKSVTVAEGLIEDHFDVTVKMSTYLVAFIISDFESV-SKITKSGVKVSV 224
Query: 127 YAREGQLEHMEFAQKTAIAAINFYVEYFNISYPLPKLDLIAIPDFVSGAMEHWGLVTFRE 186
YA ++ ++A A+ + FY +YF+I YPLPK DL AIPDF SGAME+WGL T+RE
Sbjct: 225 YAVPDKINQADYALDAAVTLLEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENWGLTTYRE 284
Query: 187 AAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMGWWNDLWLNEGFASYMQYKALAK 246
+A+LF SS +K + MT +HELAH WFG+LVTM WWNDLWLNEGFA +M++ +++
Sbjct: 285 SALLFDAEKSSASSKLGITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSV 344
Query: 247 VEPTWEVDTMFLTDMLHSTLQLDQTLSSHPIVQTVSNPDQITEIFDVISYQKGSSVIRML 306
P +V F + +++D SSHP+ V NP QI E+FD +SY KG+ ++ ML
Sbjct: 345 THPELKVGDYFFGKCFDA-MEVDALNSSHPVSTPVENPAQIREMFDDVSYDKGACILNML 403
Query: 307 ENMMGEESFAHGVTSYLNEFQFKNAETNDLWSHLQKFA---------------------- 344
+ ++F G+ YL + +KN + DLW +
Sbjct: 404 REYLSADAFKSGIVQYLQKHSYKNTKNEDLWDSMASICPTDGVKGMDGFCSRSQHSSSSS 463
Query: 345 ----NNMSVTSVMDTYTRQMGFPIITVKKSGDQVTFTQQRYLSNPNASYNPDDSPFKYLW 400
+ V ++M+T+T Q GFP+IT+ G V Q+ Y+ + + PD YLW
Sbjct: 464 HWHQEGVDVKTMMNTWTLQKGFPLITITVRGRNVHMKQEHYMKGSDGA--PDTG---YLW 518
Query: 401 DVYITMFTSSDPSHTLHTWLYRNMSE 426
V +T TS S +H +L + ++
Sbjct: 519 HVPLTFITSK--SDMVHRFLLKTKTD 542
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 69/91 (75%)
Query: 628 EDLIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVT 687
+DL AIPDF SGAME+WGL T+RE+A+LF SS +K + MT +HELAH WFG+LVT
Sbjct: 261 QDLAAIPDFQSGAMENWGLTTYRESALLFDAEKSSASSKLGITMTVAHELAHQWFGNLVT 320
Query: 688 MGWWNDLWLNEGFASYMQYKALAKVEPTWEV 718
M WWNDLWLNEGFA +M++ +++ P +V
Sbjct: 321 MEWWNDLWLNEGFAKFMEFVSVSVTHPELKV 351
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 112/219 (51%), Gaps = 8/219 (3%)
Query: 696 LNEGFASY--MQYKALAKVEPTWEVLYIRCLLKDKLSEETWKVENKSYLEVNLKLVLNDL 753
LNE Y M+ + + +VE ++ IR LL+D + ++TW E S E L+ L L
Sbjct: 632 LNELIPMYKLMEKRDMNEVETQFKAFLIR-LLRDLIDKQTWTDEG-SVSERMLRSQLLLL 689
Query: 754 GCNFGAPSCLKKAADLLKNWFDSG--VKPEADLRGLVYRYGMENVGEEEWKKMWAKFREE 811
C C+++A + W +S + D+ V+ G ++ E W +++K++
Sbjct: 690 ACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGAQST--EGWDFLYSKYQFS 747
Query: 812 SNPQEQIKMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQDYFTVIVMVAGNPKGLPVAWDY 871
+ E+ ++ L + + L+ L+ + I++Q++ ++ ++ NP G P+AW +
Sbjct: 748 LSSTEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQILTLIGRNPVGYPLAWQF 807
Query: 872 VKKNWDYLVKRFGLNHRVFGRIIPSVCGKFTTQERLDEV 910
++KNW+ LV++F L ++ +F+T+ RL+EV
Sbjct: 808 LRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRTRLEEV 846
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 61/140 (43%), Gaps = 5/140 (3%)
Query: 463 PWELNSRLETTVIPKMYDLYLNPYLGKKLFTGTVKINIEVTNATGYIYLHKSSLTIEETT 522
PW RL VIP YDL ++ L F GT K+ I + T I LH L I T
Sbjct: 3 PWN-KIRLPEYVIPVHYDLLIHANLTTLTFWGTTKVEITASQPTSTIILHSHHLQISRAT 61
Query: 523 VFK--GEDITPIDLLSTFDYAKNEYWVITFKETIDPG-SYVLXXXXXXXXXXXXXXXYES 579
+ K GE ++ + L ++ + E + E + G Y + Y+S
Sbjct: 62 LRKGAGERLSE-EPLQVLEHPRQEQIALLAPEPLLVGLPYTVVIHYAGNLSETFHGFYKS 120
Query: 580 MYMNYKNHKRLIATSKFEPT 599
Y + R++A+++FEPT
Sbjct: 121 TYRTKEGELRILASTQFEPT 140
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 62/144 (43%), Gaps = 16/144 (11%)
Query: 910 VLDARDRSNLLDDAFNLAESQMIEYSTTFNLMKYMSKEDHFVPWTVVYNKLSRLDDKLYS 969
+ + DR++L+++AF L + +L Y+ E +P V+ L+ L
Sbjct: 585 AVSSNDRASLINNAFQLVSIGKLSIEKALDLSLYLKHETEIMP---VFQGLNEL------ 635
Query: 970 TEGHEDFKLSRLDDKLYSTEGHEDFKLYIRCLLKDKLSEETWKVENKSYLEVNLKLVLND 1029
+ +L +K E FK ++ LL+D + ++TW E S E L+ L
Sbjct: 636 ------IPMYKLMEKRDMNEVETQFKAFLIRLLRDLIDKQTWTDEG-SVSERMLRSQLLL 688
Query: 1030 LGCNFGAPSCLKKAADLLKNWFDS 1053
L C C+++A + W +S
Sbjct: 689 LACVHNYQPCVQRAEGYFRKWKES 712
>pdb|3SE6|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
pdb|3SE6|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
Length = 967
Score = 262 bits (669), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 141/363 (38%), Positives = 204/363 (56%), Gaps = 33/363 (9%)
Query: 92 FATTVPMSTYLVCFIVCDFDHLPSQDAKQGFPIKVYAREGQLEHMEFAQKTAIAAINFYV 151
F TTV MSTYLV +IVCDF H S G + +YA + +A + ++ ++FY
Sbjct: 253 FETTVKMSTYLVAYIVCDF-HSLSGFTSSGVKVSIYASPDKRNQTHYALQASLKLLDFYE 311
Query: 152 EYFNISYPLPKLDLIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHE 211
+YF+I YPL KLDLIAIPDF GAME+WGL+T+RE ++LF +SS +K V +HE
Sbjct: 312 KYFDIYYPLSKLDLIAIPDFAPGAMENWGLITYRETSLLFDPKTSSASDKLWVTRVIAHE 371
Query: 212 LAHMWFGDLVTMGWWNDLWLNEGFASYMQYKALAKVEPTWEVDTMFLTDMLHSTLQLDQT 271
LAH WFG+LVTM WWND+WLNEGFA YM+ A+ P + D FL ++ + D
Sbjct: 372 LAHQWFGNLVTMEWWNDIWLNEGFAKYMELIAVNATYPELQFDDYFL-NVCFEVITKDSL 430
Query: 272 LSSHPIVQTVSNPDQITEIFDVISYQKGSSVIRMLENMMGEESFAHGVTSYLNEFQFKNA 331
SS PI + P QI E+FD +SY KG+ ++ ML++ +GEE F G+ YL +F ++NA
Sbjct: 431 NSSRPISKPAETPTQIQEMFDEVSYNKGACILNMLKDFLGEEKFQKGIIQYLKKFSYRNA 490
Query: 332 ETNDLWSHLQK--------------------------FANNMSVTSVMDTYTRQMGFPII 365
+ +DLWS L N V +M T+T Q G P++
Sbjct: 491 KNDDLWSSLSNSCLESDFTSGGVCHSDPKMTSNMLAFLGENAEVKEMMTTWTLQKGIPLL 550
Query: 366 TVKKSGDQVTFTQQRYLSNPNASYNPDDSPF--KYLWDVYITMFTSSDPSHTLHTWLYRN 423
VK+ G + Q+R+L +P+ +YLW + +T TSS S+ +H + ++
Sbjct: 551 VVKQDGCSLRLQQERFLQGVFQE-DPEWRALQERYLWHIPLTYSTSS--SNVIHRHILKS 607
Query: 424 MSE 426
++
Sbjct: 608 KTD 610
Score = 116 bits (290), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 63/86 (73%)
Query: 629 DLIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTM 688
DLIAIPDF GAME+WGL+T+RE ++LF +SS +K V +HELAH WFG+LVTM
Sbjct: 324 DLIAIPDFAPGAMENWGLITYRETSLLFDPKTSSASDKLWVTRVIAHELAHQWFGNLVTM 383
Query: 689 GWWNDLWLNEGFASYMQYKALAKVEP 714
WWND+WLNEGFA YM+ A+ P
Sbjct: 384 EWWNDIWLNEGFAKYMELIAVNATYP 409
Score = 92.8 bits (229), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 97/193 (50%), Gaps = 5/193 (2%)
Query: 720 YIRCLLKDKLSEETWKVENKSYLEVNLKLVLNDLGCNFGAPSCLKKAADLLKNWFDSGVK 779
Y+ K + ++W + S + L+ L L C+ C++KAA+L W +S K
Sbjct: 725 YLLQYFKPVIDRQSWS-DKGSVWDRMLRSALLKLACDLNHAPCIQKAAELFSQWMESSGK 783
Query: 780 PE--ADLRGLVYRYGMENVGEEEWKKMWAKFREESNPQEQIKMLGGLSSVKEPKLLEKFL 837
D+ +VY G + W + ++ + EQ K+L LS+ K + L K +
Sbjct: 784 LNIPTDVLKIVYSVGAQTTAG--WNYLLEQYELSMSSAEQNKILYALSTSKHQEKLLKLI 841
Query: 838 EMAKDEKNIRSQDYFTVIVMVAGNPKGLPVAWDYVKKNWDYLVKRFGLNHRVFGRIIPSV 897
E+ + K I++Q+ ++ +A PKG +AWD+V++NW +L+K+F L II
Sbjct: 842 ELGMEGKVIKTQNLAALLHAIARRPKGQQLAWDFVRENWTHLLKKFDLGSYDIRMIISGT 901
Query: 898 CGKFTTQERLDEV 910
F+++++L EV
Sbjct: 902 TAHFSSKDKLQEV 914
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Query: 463 PWELNSRLETTVIPKMYDLYLNPYLGKKLFTGTVKINIEVTNATGYIYLHKSSLTIEETT 522
PW+ RL + VIP YDL+++P L F + KI + V+NAT +I LH L I T
Sbjct: 63 PWQ-ELRLPSVVIPLHYDLFVHPNLTSLDFVASEKIEVLVSNATQFIILHSKDLEITNAT 121
Query: 523 VFKGED---ITPIDLLSTFDYAKNEYWVITFKETIDPG-SYVLXXXXXXXXXXXXXXXYE 578
+ ED + P L Y +E + E + P Y + Y+
Sbjct: 122 LQSEEDSRYMKPGKELKVLSYPAHEQIALLVPEKLTPHLKYYVAMDFQAKLGDGFEGFYK 181
Query: 579 SMYMNYKNHKRLIATSKFEPT 599
S Y R++A + FEPT
Sbjct: 182 STYRTLGGETRILAVTDFEPT 202
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/186 (19%), Positives = 66/186 (35%), Gaps = 37/186 (19%)
Query: 871 YVKKNWDYLVKRFGLNHRVFGRIIPSVCGKFTTQERLDEVLDARDRSNLLDDAFNLAESQ 930
Y WD L+ + NH + L +DR L+ D F L +
Sbjct: 635 YEGHGWDQLITQLNQNHTL---------------------LRPKDRVGLIHDVFQLVGAG 673
Query: 931 MIEYSTTFNLMKYMSKEDHFVPWTVVYNKLSRLDDKLYSTEGHEDFKLSRLDDKLYSTEG 990
+ ++ Y+ E + LS L+ + D+ ++
Sbjct: 674 RLTLDKALDMTYYLQHE---TSSPALLEGLSYLES------------FYHMMDRRNISDI 718
Query: 991 HEDFKLYIRCLLKDKLSEETWKVENKSYLEVNLKLVLNDLGCNFGAPSCLKKAADLLKNW 1050
E+ K Y+ K + ++W + S + L+ L L C+ C++KAA+L W
Sbjct: 719 SENLKRYLLQYFKPVIDRQSWS-DKGSVWDRMLRSALLKLACDLNHAPCIQKAAELFSQW 777
Query: 1051 FDSGVK 1056
+S K
Sbjct: 778 MESSGK 783
>pdb|4E36|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
pdb|4E36|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
Length = 967
Score = 259 bits (663), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 140/363 (38%), Positives = 203/363 (55%), Gaps = 33/363 (9%)
Query: 92 FATTVPMSTYLVCFIVCDFDHLPSQDAKQGFPIKVYAREGQLEHMEFAQKTAIAAINFYV 151
F TTV MSTYLV +IVCDF H S G + +YA + +A + ++ ++FY
Sbjct: 253 FETTVKMSTYLVAYIVCDF-HSLSGFTSSGVKVSIYASPDKRNQTHYALQASLKLLDFYE 311
Query: 152 EYFNISYPLPKLDLIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHE 211
+YF+I YPL KLDLIAIPDF GAME+WGL+T+RE ++LF +SS +K V +HE
Sbjct: 312 KYFDIYYPLSKLDLIAIPDFAPGAMENWGLITYRETSLLFDPKTSSASDKLWVTRVIAHE 371
Query: 212 LAHMWFGDLVTMGWWNDLWLNEGFASYMQYKALAKVEPTWEVDTMFLTDMLHSTLQLDQT 271
LAH WFG+LVTM WWND+WL EGFA YM+ A+ P + D FL ++ + D
Sbjct: 372 LAHQWFGNLVTMEWWNDIWLKEGFAKYMELIAVNATYPELQFDDYFL-NVCFEVITKDSL 430
Query: 272 LSSHPIVQTVSNPDQITEIFDVISYQKGSSVIRMLENMMGEESFAHGVTSYLNEFQFKNA 331
SS PI + P QI E+FD +SY KG+ ++ ML++ +GEE F G+ YL +F ++NA
Sbjct: 431 NSSRPISKPAETPTQIQEMFDEVSYNKGACILNMLKDFLGEEKFQKGIIQYLKKFSYRNA 490
Query: 332 ETNDLWSHLQK--------------------------FANNMSVTSVMDTYTRQMGFPII 365
+ +DLWS L N V +M T+T Q G P++
Sbjct: 491 KNDDLWSSLSNSCLESDFTSGGVCHSDPKMTSNMLAFLGENAEVKEMMTTWTLQKGIPLL 550
Query: 366 TVKKSGDQVTFTQQRYLSNPNASYNPDDSPF--KYLWDVYITMFTSSDPSHTLHTWLYRN 423
VK+ G + Q+R+L +P+ +YLW + +T TSS S+ +H + ++
Sbjct: 551 VVKQDGCSLRLQQERFLQGVFQE-DPEWRALQERYLWHIPLTYSTSS--SNVIHRHILKS 607
Query: 424 MSE 426
++
Sbjct: 608 KTD 610
Score = 114 bits (284), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 62/86 (72%)
Query: 629 DLIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTM 688
DLIAIPDF GAME+WGL+T+RE ++LF +SS +K V +HELAH WFG+LVTM
Sbjct: 324 DLIAIPDFAPGAMENWGLITYRETSLLFDPKTSSASDKLWVTRVIAHELAHQWFGNLVTM 383
Query: 689 GWWNDLWLNEGFASYMQYKALAKVEP 714
WWND+WL EGFA YM+ A+ P
Sbjct: 384 EWWNDIWLKEGFAKYMELIAVNATYP 409
Score = 92.8 bits (229), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 97/193 (50%), Gaps = 5/193 (2%)
Query: 720 YIRCLLKDKLSEETWKVENKSYLEVNLKLVLNDLGCNFGAPSCLKKAADLLKNWFDSGVK 779
Y+ K + ++W + S + L+ L L C+ C++KAA+L W +S K
Sbjct: 725 YLLQYFKPVIDRQSWS-DKGSVWDRMLRSALLKLACDLNHAPCIQKAAELFSQWMESSGK 783
Query: 780 PE--ADLRGLVYRYGMENVGEEEWKKMWAKFREESNPQEQIKMLGGLSSVKEPKLLEKFL 837
D+ +VY G + W + ++ + EQ K+L LS+ K + L K +
Sbjct: 784 LNIPTDVLKIVYSVGAQTTAG--WNYLLEQYELSMSSAEQNKILYALSTSKHQEKLLKLI 841
Query: 838 EMAKDEKNIRSQDYFTVIVMVAGNPKGLPVAWDYVKKNWDYLVKRFGLNHRVFGRIIPSV 897
E+ + K I++Q+ ++ +A PKG +AWD+V++NW +L+K+F L II
Sbjct: 842 ELGMEGKVIKTQNLAALLHAIARRPKGQQLAWDFVRENWTHLLKKFDLGSYDIRMIISGT 901
Query: 898 CGKFTTQERLDEV 910
F+++++L EV
Sbjct: 902 TAHFSSKDKLQEV 914
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Query: 463 PWELNSRLETTVIPKMYDLYLNPYLGKKLFTGTVKINIEVTNATGYIYLHKSSLTIEETT 522
PW+ RL + VIP YDL+++P L F + KI + V+NAT +I LH L I T
Sbjct: 63 PWQ-ELRLPSVVIPLHYDLFVHPNLTSLDFVASEKIEVLVSNATQFIILHSKDLEITNAT 121
Query: 523 VFKGED---ITPIDLLSTFDYAKNEYWVITFKETIDPG-SYVLXXXXXXXXXXXXXXXYE 578
+ ED + P L Y +E + E + P Y + Y+
Sbjct: 122 LQSEEDSRYMKPGKELKVLSYPAHEQIALLVPEKLTPHLKYYVAMDFQAKLGDGFEGFYK 181
Query: 579 SMYMNYKNHKRLIATSKFEPT 599
S Y R++A + FEPT
Sbjct: 182 STYRTLGGETRILAVTDFEPT 202
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/186 (19%), Positives = 66/186 (35%), Gaps = 37/186 (19%)
Query: 871 YVKKNWDYLVKRFGLNHRVFGRIIPSVCGKFTTQERLDEVLDARDRSNLLDDAFNLAESQ 930
Y WD L+ + NH + L +DR L+ D F L +
Sbjct: 635 YEGHGWDQLITQLNQNHTL---------------------LRPKDRVGLIHDVFQLVGAG 673
Query: 931 MIEYSTTFNLMKYMSKEDHFVPWTVVYNKLSRLDDKLYSTEGHEDFKLSRLDDKLYSTEG 990
+ ++ Y+ H + LS L+ + D+ ++
Sbjct: 674 RLTLDKALDMTYYLQ---HETSSPALLEGLSYLES------------FYHMMDRRNISDI 718
Query: 991 HEDFKLYIRCLLKDKLSEETWKVENKSYLEVNLKLVLNDLGCNFGAPSCLKKAADLLKNW 1050
E+ K Y+ K + ++W + S + L+ L L C+ C++KAA+L W
Sbjct: 719 SENLKRYLLQYFKPVIDRQSWS-DKGSVWDRMLRSALLKLACDLNHAPCIQKAAELFSQW 777
Query: 1051 FDSGVK 1056
+S K
Sbjct: 778 MESSGK 783
>pdb|3Q7J|A Chain A, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
pdb|3Q7J|B Chain B, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
Length = 780
Score = 229 bits (584), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 120/310 (38%), Positives = 181/310 (58%), Gaps = 30/310 (9%)
Query: 87 QTTVEFATTVPMSTYLVCFIVCDFDH-----------LPS-QDAKQGFPIKVYAREGQLE 134
+ VEF T MSTYL+ + F + L S +D + +P
Sbjct: 147 RKVVEFQDTPRMSTYLLYVGIGKFRYEYEKYRDIDLILASLKDIRSKYP----------- 195
Query: 135 HMEFAQKTAIAAINFYVEYFNISYPLPKLDLIAIPDFVSGAMEHWGLVTFREAAVLFKKG 194
++ A+K+ + FY YF I Y LPK+ LI++P+F +GAME+WG +TFRE + +
Sbjct: 196 -LDMARKS----VEFYENYFGIPYALPKMHLISVPEFGAGAMENWGAITFREIYMDIAEN 250
Query: 195 SSSIVNKKRVAMTTSHELAHMWFGDLVTMGWWNDLWLNEGFASYMQYKALAKVEPTWEVD 254
S+ V K+ A +HE+AH WFGDLVTM WWNDLWLNE FA++M YK + + P W
Sbjct: 251 SAVTV-KRNSATVIAHEIAHQWFGDLVTMKWWNDLWLNESFATFMSYKTMDTLFPEWSFW 309
Query: 255 TMFLTDMLHSTLQLDQTLSSHPIVQTVSNPDQITEIFDVISYQKGSSVIRMLENMMGEES 314
F L+ D ++HPI V +PD+I++IFD ISY KG+S++RM+E+ G E
Sbjct: 310 GDFFVSRTSGALRSDSLKNTHPIEVDVRDPDEISQIFDEISYGKGASILRMIEDYAGYEE 369
Query: 315 FAHGVTSYLNEFQFKNAETNDLWSHLQKFANNMSVTSVMDTYTRQMGFPIITVKKSGDQV 374
F G++ YLN+ +F NAE +DLW+ ++ + V VM+ + + G+P+I +K++G ++
Sbjct: 370 FRKGISKYLNDHKFGNAEGSDLWTAIEDVSGK-PVKRVMEYWIKNPGYPVIKLKRNGRKI 428
Query: 375 TFTQQRYLSN 384
T Q R+L N
Sbjct: 429 TMYQTRFLLN 438
Score = 107 bits (266), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 62/87 (71%), Gaps = 1/87 (1%)
Query: 630 LIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMG 689
LI++P+F +GAME+WG +TFRE + + S+ V K+ A +HE+AH WFGDLVTM
Sbjct: 221 LISVPEFGAGAMENWGAITFREIYMDIAENSAVTV-KRNSATVIAHEIAHQWFGDLVTMK 279
Query: 690 WWNDLWLNEGFASYMQYKALAKVEPTW 716
WWNDLWLNE FA++M YK + + P W
Sbjct: 280 WWNDLWLNESFATFMSYKTMDTLFPEW 306
>pdb|1Z1W|A Chain A, Crystal Structures Of The Tricorn Interacting Facor F3
From Thermoplasma Acidophilum, A Zinc Aminopeptidase In
Three Different Conformations
pdb|1Z5H|A Chain A, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
pdb|1Z5H|B Chain B, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
Length = 780
Score = 229 bits (583), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 120/310 (38%), Positives = 181/310 (58%), Gaps = 30/310 (9%)
Query: 87 QTTVEFATTVPMSTYLVCFIVCDFDH-----------LPS-QDAKQGFPIKVYAREGQLE 134
+ VEF T MSTYL+ + F + L S +D + +P
Sbjct: 147 RKVVEFQDTPRMSTYLLYVGIGKFRYEYEKYRDIDLILASLKDIRSKYP----------- 195
Query: 135 HMEFAQKTAIAAINFYVEYFNISYPLPKLDLIAIPDFVSGAMEHWGLVTFREAAVLFKKG 194
++ A+K+ + FY YF I Y LPK+ LI++P+F +GAME+WG +TFRE + +
Sbjct: 196 -LDMARKS----VEFYENYFGIPYALPKMHLISVPEFGAGAMENWGAITFREIYMDIAEN 250
Query: 195 SSSIVNKKRVAMTTSHELAHMWFGDLVTMGWWNDLWLNEGFASYMQYKALAKVEPTWEVD 254
S+ V K+ A +HE+AH WFGDLVTM WWNDLWLNE FA++M YK + + P W
Sbjct: 251 SAVTV-KRNSANVIAHEIAHQWFGDLVTMKWWNDLWLNESFATFMSYKTMDTLFPEWSFW 309
Query: 255 TMFLTDMLHSTLQLDQTLSSHPIVQTVSNPDQITEIFDVISYQKGSSVIRMLENMMGEES 314
F L+ D ++HPI V +PD+I++IFD ISY KG+S++RM+E+ G E
Sbjct: 310 GDFFVSRTSGALRSDSLKNTHPIEVDVRDPDEISQIFDEISYGKGASILRMIEDYAGYEE 369
Query: 315 FAHGVTSYLNEFQFKNAETNDLWSHLQKFANNMSVTSVMDTYTRQMGFPIITVKKSGDQV 374
F G++ YLN+ +F NAE +DLW+ ++ + V VM+ + + G+P+I +K++G ++
Sbjct: 370 FRKGISKYLNDHKFGNAEGSDLWTAIEDVSGK-PVKRVMEYWIKNPGYPVIKLKRNGRKI 428
Query: 375 TFTQQRYLSN 384
T Q R+L N
Sbjct: 429 TMYQTRFLLN 438
Score = 106 bits (265), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 62/87 (71%), Gaps = 1/87 (1%)
Query: 630 LIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMG 689
LI++P+F +GAME+WG +TFRE + + S+ V K+ A +HE+AH WFGDLVTM
Sbjct: 221 LISVPEFGAGAMENWGAITFREIYMDIAENSAVTV-KRNSANVIAHEIAHQWFGDLVTMK 279
Query: 690 WWNDLWLNEGFASYMQYKALAKVEPTW 716
WWNDLWLNE FA++M YK + + P W
Sbjct: 280 WWNDLWLNESFATFMSYKTMDTLFPEW 306
>pdb|2DQ6|A Chain A, Crystal Structure Of Aminopeptidase N From Escherichia
Coli
pdb|2DQM|A Chain A, Crystal Structure Of Aminopeptidase N Complexed With
Bestatin
pdb|2ZXG|A Chain A, Aminopeptidase N Complexed With The Aminophosphinic
Inhibitor Of Pl250, A Transition State Analogue
Length = 870
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 95/371 (25%), Positives = 162/371 (43%), Gaps = 40/371 (10%)
Query: 90 VEFATTVPMSTYLVCFIVCDFDHLP---SQDAKQGFPIKVYAREGQLEHMEFAQKTAIAA 146
V++ P YL + DFD L + + + +++Y G L+ +A + +
Sbjct: 174 VQWQDPFPKPCYLFALVAGDFDVLRDTFTTRSGREVALELYVDRGNLDRAPWAMTSLKNS 233
Query: 147 INFYVEYFNISYPLPKLDLIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAM 206
+ + E F + Y L ++A+ F GAME+ GL F VL + +++ + +
Sbjct: 234 MKWDEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKYVLARTDTATDKDYLDIER 293
Query: 207 TTSHELAHMWFGDLVTMGWWNDLWLNEG--------FASYMQYKALAKVEPTWEVDTMFL 258
HE H W G+ VT W L L EG F+S + +A+ ++ V TM
Sbjct: 294 VIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGSRAVNRIN---NVRTM-- 348
Query: 259 TDMLHSTLQL--DQTLSSHPIVQTVSNPDQITEI---FDVISYQKGSSVIRMLENMMGEE 313
LQ D + +HPI PD + E+ + + Y+KG+ VIRM+ ++GEE
Sbjct: 349 -----RGLQFAEDASPMAHPI-----RPDMVIEMNNFYTLTVYEKGAEVIRMIHTLLGEE 398
Query: 314 SFAHGVTSYLNEFQFKNAETNDLWSHLQKFANNMSVTSVMDTYTRQMGFPIITVKK---- 369
+F G+ Y A +D ++ A+N+ ++ Y+ Q G PI+TVK
Sbjct: 399 NFQKGMQLYFERHDGSAATCDDFVQAMED-ASNVDLSHFRRWYS-QSGTPIVTVKDDYNP 456
Query: 370 SGDQVTFT-QQRYLSNPN-ASYNPDDSPFKY-LWDVYITMFTSSDPSHTLHTWLYRNMSE 426
+Q T T QR + P+ A P PF L+D + H +++ L +E
Sbjct: 457 ETEQYTLTISQRTPATPDQAEKQPLHIPFAIELYDNEGKVIPLQKGGHPVNSVLNVTQAE 516
Query: 427 DCRTYQTILFE 437
+ + F+
Sbjct: 517 QTFVFDNVYFQ 527
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%)
Query: 630 LIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMG 689
++A+ F GAME+ GL F VL + +++ + + HE H W G+ VT
Sbjct: 252 IVAVDFFNMGAMENKGLNIFNSKYVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCR 311
Query: 690 WWNDLWLNEGFASY 703
W L L EG +
Sbjct: 312 DWFQLSLKEGLTVF 325
>pdb|3PUU|A Chain A, Crystal Structure Of Glu121gln Mutant Of E. Coli
Aminopeptidase N
Length = 891
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 95/371 (25%), Positives = 162/371 (43%), Gaps = 40/371 (10%)
Query: 90 VEFATTVPMSTYLVCFIVCDFDHLP---SQDAKQGFPIKVYAREGQLEHMEFAQKTAIAA 146
V++ P YL + DFD L + + + +++Y G L+ +A + +
Sbjct: 195 VQWQDPFPKPCYLFALVAGDFDVLRDTFTTRSGREVALELYVDRGNLDRAPWAMTSLKNS 254
Query: 147 INFYVEYFNISYPLPKLDLIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAM 206
+ + E F + Y L ++A+ F GAME+ GL F VL + +++ + +
Sbjct: 255 MKWDEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKYVLARTDTATDKDYLDIER 314
Query: 207 TTSHELAHMWFGDLVTMGWWNDLWLNEG--------FASYMQYKALAKVEPTWEVDTMFL 258
HE H W G+ VT W L L EG F+S + +A+ ++ V TM
Sbjct: 315 VIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGSRAVNRIN---NVRTM-- 369
Query: 259 TDMLHSTLQL--DQTLSSHPIVQTVSNPDQITEI---FDVISYQKGSSVIRMLENMMGEE 313
LQ D + +HPI PD + E+ + + Y+KG+ VIRM+ ++GEE
Sbjct: 370 -----RGLQFAEDASPMAHPI-----RPDMVIEMNNFYTLTVYEKGAEVIRMIHTLLGEE 419
Query: 314 SFAHGVTSYLNEFQFKNAETNDLWSHLQKFANNMSVTSVMDTYTRQMGFPIITVKK---- 369
+F G+ Y A +D ++ A+N+ ++ Y+ Q G PI+TVK
Sbjct: 420 NFQKGMQLYFERHDGSAATCDDFVQAMED-ASNVDLSHFRRWYS-QSGTPIVTVKDDYNP 477
Query: 370 SGDQVTFT-QQRYLSNPN-ASYNPDDSPFKY-LWDVYITMFTSSDPSHTLHTWLYRNMSE 426
+Q T T QR + P+ A P PF L+D + H +++ L +E
Sbjct: 478 ETEQYTLTISQRTPATPDQAEKQPLHIPFAIELYDNEGKVIPLQKGGHPVNSVLNVTQAE 537
Query: 427 DCRTYQTILFE 437
+ + F+
Sbjct: 538 QTFVFDNVYFQ 548
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%)
Query: 630 LIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMG 689
++A+ F GAME+ GL F VL + +++ + + HE H W G+ VT
Sbjct: 273 IVAVDFFNMGAMENKGLNIFNSKYVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCR 332
Query: 690 WWNDLWLNEGFASY 703
W L L EG +
Sbjct: 333 DWFQLSLKEGLTVF 346
>pdb|2HPO|A Chain A, Structure Of Aminopeptidase N From E. Coli Suggests A
Compartmentalized, Gated Active Site
pdb|2HPT|A Chain A, Crystal Structure Of E. Coli Pepn (Aminopeptidase N)in
Complex With Bestatin
pdb|3KED|A Chain A, Crystal Structure Of Aminopeptidase N In Complex With 2,4-
Diaminobutyric Acid
pdb|3B2P|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Arginine
pdb|3B2X|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Lysine
pdb|3B34|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Phenylalanine
pdb|3B37|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Tyrosine
pdb|3B3B|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Tryptophan
pdb|3QJX|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With L-Serine
Length = 891
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 95/371 (25%), Positives = 162/371 (43%), Gaps = 40/371 (10%)
Query: 90 VEFATTVPMSTYLVCFIVCDFDHLP---SQDAKQGFPIKVYAREGQLEHMEFAQKTAIAA 146
V++ P YL + DFD L + + + +++Y G L+ +A + +
Sbjct: 195 VQWQDPFPKPCYLFALVAGDFDVLRDTFTTRSGREVALELYVDRGNLDRAPWAMTSLKNS 254
Query: 147 INFYVEYFNISYPLPKLDLIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAM 206
+ + E F + Y L ++A+ F GAME+ GL F VL + +++ + +
Sbjct: 255 MKWDEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKYVLARTDTATDKDYLDIER 314
Query: 207 TTSHELAHMWFGDLVTMGWWNDLWLNEG--------FASYMQYKALAKVEPTWEVDTMFL 258
HE H W G+ VT W L L EG F+S + +A+ ++ V TM
Sbjct: 315 VIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGSRAVNRIN---NVRTM-- 369
Query: 259 TDMLHSTLQL--DQTLSSHPIVQTVSNPDQITEI---FDVISYQKGSSVIRMLENMMGEE 313
LQ D + +HPI PD + E+ + + Y+KG+ VIRM+ ++GEE
Sbjct: 370 -----RGLQFAEDASPMAHPI-----RPDMVIEMNNFYTLTVYEKGAEVIRMIHTLLGEE 419
Query: 314 SFAHGVTSYLNEFQFKNAETNDLWSHLQKFANNMSVTSVMDTYTRQMGFPIITVKK---- 369
+F G+ Y A +D ++ A+N+ ++ Y+ Q G PI+TVK
Sbjct: 420 NFQKGMQLYFERHDGSAATCDDFVQAMED-ASNVDLSHFRRWYS-QSGTPIVTVKDDYNP 477
Query: 370 SGDQVTFT-QQRYLSNPN-ASYNPDDSPFKY-LWDVYITMFTSSDPSHTLHTWLYRNMSE 426
+Q T T QR + P+ A P PF L+D + H +++ L +E
Sbjct: 478 ETEQYTLTISQRTPATPDQAEKQPLHIPFAIELYDNEGKVIPLQKGGHPVNSVLNVTQAE 537
Query: 427 DCRTYQTILFE 437
+ + F+
Sbjct: 538 QTFVFDNVYFQ 548
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%)
Query: 630 LIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMG 689
++A+ F GAME+ GL F VL + +++ + + HE H W G+ VT
Sbjct: 273 IVAVDFFNMGAMENKGLNIFNSKYVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCR 332
Query: 690 WWNDLWLNEGFASY 703
W L L EG +
Sbjct: 333 DWFQLSLKEGLTVF 346
>pdb|3T8V|A Chain A, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
Length = 895
Score = 90.5 bits (223), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 140/308 (45%), Gaps = 24/308 (7%)
Query: 101 YLVCFIVCDFDHLPS----QDAKQGFPIKVYAREGQLEHMEFAQKTAIAAINFYVEYFNI 156
YL + D HL + + K+ + V++ E + +++A + ++ F +YF +
Sbjct: 188 YLFAVVAGDLKHLSATYITKYTKKKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGL 247
Query: 157 SYPLPKLDLIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMW 216
Y L +L+L+A+ DF GAME+ GL F ++L K +S + R+ HE H +
Sbjct: 248 EYDLSRLNLVAVSDFNVGAMENKGLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQY 307
Query: 217 FGDLVTMGWWNDLWLNEGFASYMQYKALAKVEPTWEVDT-MFLTDMLHSTLQL-DQTLSS 274
G+ VT+ W L L EG + + L E T V T + D+L S L D + S
Sbjct: 308 TGNRVTLRDWFQLTLKEGLTVHRE--NLFSEEMTKTVTTRLSHVDLLRSVQFLEDSSPLS 365
Query: 275 HPIVQTVSNPD---QITEIFDVISYQKGSSVIRMLENMMGEESFAHGVTSYLNEFQFKNA 331
HPI P+ + + Y KGS V+RM ++GEE + G Y+ + A
Sbjct: 366 HPI-----RPESYVSMANFYTTTVYDKGSEVMRMYLTILGEEYYKKGFDIYIKKNDGNTA 420
Query: 332 ETNDL-----WSHLQKFANNMSVTSVMDTYTRQMGFPIITVKKSGDQVTFTQQRYLSNPN 386
D ++ K A+N + + + Q G P ++ K + D +++Y + N
Sbjct: 421 TCEDFNYAMEQAYKMKKADNSANLNQYLLWFSQSGTPHVSFKYNYDA---EKKQYSIHVN 477
Query: 387 ASYNPDDS 394
PD++
Sbjct: 478 QYTKPDEN 485
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%)
Query: 629 DLIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTM 688
+L+A+ DF GAME+ GL F ++L K +S + R+ HE H + G+ VT+
Sbjct: 255 NLVAVSDFNVGAMENKGLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQYTGNRVTL 314
Query: 689 GWWNDLWLNEGFASYMQ 705
W L L EG + +
Sbjct: 315 RDWFQLTLKEGLTVHRE 331
>pdb|3Q43|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 15
pdb|3Q44|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 16
Length = 891
Score = 90.1 bits (222), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 140/308 (45%), Gaps = 24/308 (7%)
Query: 101 YLVCFIVCDFDHLPS----QDAKQGFPIKVYAREGQLEHMEFAQKTAIAAINFYVEYFNI 156
YL + D HL + + K+ + V++ E + +++A + ++ F +YF +
Sbjct: 189 YLFAVVAGDLKHLSATYITKYTKKKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGL 248
Query: 157 SYPLPKLDLIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMW 216
Y L +L+L+A+ DF GAME+ GL F ++L K +S + R+ HE H +
Sbjct: 249 EYDLSRLNLVAVSDFNVGAMENKGLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQY 308
Query: 217 FGDLVTMGWWNDLWLNEGFASYMQYKALAKVEPTWEVDT-MFLTDMLHSTLQL-DQTLSS 274
G+ VT+ W L L EG + + L E T V T + D+L S L D + S
Sbjct: 309 TGNRVTLRDWFQLTLKEGLTVHRE--NLFSEEMTKTVTTRLSHVDLLRSVQFLEDSSPLS 366
Query: 275 HPIVQTVSNPD---QITEIFDVISYQKGSSVIRMLENMMGEESFAHGVTSYLNEFQFKNA 331
HPI P+ + + Y KGS V+RM ++GEE + G Y+ + A
Sbjct: 367 HPI-----RPESYVSMENFYTTTVYDKGSEVMRMYLTILGEEYYKKGFDIYIKKNDGNTA 421
Query: 332 ETNDL-----WSHLQKFANNMSVTSVMDTYTRQMGFPIITVKKSGDQVTFTQQRYLSNPN 386
D ++ K A+N + + + Q G P ++ K + D +++Y + N
Sbjct: 422 TCEDFNYAMEQAYKMKKADNSANLNQYLLWFSQSGTPHVSFKYNYDA---EKKQYSIHVN 478
Query: 387 ASYNPDDS 394
PD++
Sbjct: 479 QYTKPDEN 486
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%)
Query: 629 DLIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTM 688
+L+A+ DF GAME+ GL F ++L K +S + R+ HE H + G+ VT+
Sbjct: 256 NLVAVSDFNVGAMENKGLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQYTGNRVTL 315
Query: 689 GWWNDLWLNEGFASYMQ 705
W L L EG + +
Sbjct: 316 RDWFQLTLKEGLTVHRE 332
>pdb|3EBG|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
pdb|3EBH|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With Bestatin
Length = 889
Score = 90.1 bits (222), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 140/308 (45%), Gaps = 24/308 (7%)
Query: 101 YLVCFIVCDFDHLPS----QDAKQGFPIKVYAREGQLEHMEFAQKTAIAAINFYVEYFNI 156
YL + D HL + + K+ + V++ E + +++A + ++ F +YF +
Sbjct: 188 YLFAVVAGDLKHLSATYITKYTKKKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGL 247
Query: 157 SYPLPKLDLIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMW 216
Y L +L+L+A+ DF GAME+ GL F ++L K +S + R+ HE H +
Sbjct: 248 EYDLSRLNLVAVSDFNVGAMENKGLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQY 307
Query: 217 FGDLVTMGWWNDLWLNEGFASYMQYKALAKVEPTWEVDT-MFLTDMLHSTLQL-DQTLSS 274
G+ VT+ W L L EG + + L E T V T + D+L S L D + S
Sbjct: 308 TGNRVTLRDWFQLTLKEGLTVHRE--NLFSEEMTKTVTTRLSHVDLLRSVQFLEDSSPLS 365
Query: 275 HPIVQTVSNPD---QITEIFDVISYQKGSSVIRMLENMMGEESFAHGVTSYLNEFQFKNA 331
HPI P+ + + Y KGS V+RM ++GEE + G Y+ + A
Sbjct: 366 HPI-----RPESYVSMENFYTTTVYDKGSEVMRMYLTILGEEYYKKGFDIYIKKNDGNTA 420
Query: 332 ETNDL-----WSHLQKFANNMSVTSVMDTYTRQMGFPIITVKKSGDQVTFTQQRYLSNPN 386
D ++ K A+N + + + Q G P ++ K + D +++Y + N
Sbjct: 421 TCEDFNYAMEQAYKMKKADNSANLNQYLLWFSQSGTPHVSFKYNYDA---EKKQYSIHVN 477
Query: 387 ASYNPDDS 394
PD++
Sbjct: 478 QYTKPDEN 485
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%)
Query: 629 DLIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTM 688
+L+A+ DF GAME+ GL F ++L K +S + R+ HE H + G+ VT+
Sbjct: 255 NLVAVSDFNVGAMENKGLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQYTGNRVTL 314
Query: 689 GWWNDLWLNEGFASYMQ 705
W L L EG + +
Sbjct: 315 RDWFQLTLKEGLTVHRE 331
>pdb|3EBI|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With The Phosphinate Dipeptide Analog
Length = 890
Score = 90.1 bits (222), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 140/308 (45%), Gaps = 24/308 (7%)
Query: 101 YLVCFIVCDFDHLPS----QDAKQGFPIKVYAREGQLEHMEFAQKTAIAAINFYVEYFNI 156
YL + D HL + + K+ + V++ E + +++A + ++ F +YF +
Sbjct: 189 YLFAVVAGDLKHLSATYITKYTKKKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGL 248
Query: 157 SYPLPKLDLIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMW 216
Y L +L+L+A+ DF GAME+ GL F ++L K +S + R+ HE H +
Sbjct: 249 EYDLSRLNLVAVSDFNVGAMENKGLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQY 308
Query: 217 FGDLVTMGWWNDLWLNEGFASYMQYKALAKVEPTWEVDT-MFLTDMLHSTLQL-DQTLSS 274
G+ VT+ W L L EG + + L E T V T + D+L S L D + S
Sbjct: 309 TGNRVTLRDWFQLTLKEGLTVHRE--NLFSEEMTKTVTTRLSHVDLLRSVQFLEDSSPLS 366
Query: 275 HPIVQTVSNPD---QITEIFDVISYQKGSSVIRMLENMMGEESFAHGVTSYLNEFQFKNA 331
HPI P+ + + Y KGS V+RM ++GEE + G Y+ + A
Sbjct: 367 HPI-----RPESYVSMENFYTTTVYDKGSEVMRMYLTILGEEYYKKGFDIYIKKNDGNTA 421
Query: 332 ETNDL-----WSHLQKFANNMSVTSVMDTYTRQMGFPIITVKKSGDQVTFTQQRYLSNPN 386
D ++ K A+N + + + Q G P ++ K + D +++Y + N
Sbjct: 422 TCEDFNYAMEQAYKMKKADNSANLNQYLLWFSQSGTPHVSFKYNYDA---EKKQYSIHVN 478
Query: 387 ASYNPDDS 394
PD++
Sbjct: 479 QYTKPDEN 486
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%)
Query: 629 DLIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTM 688
+L+A+ DF GAME+ GL F ++L K +S + R+ HE H + G+ VT+
Sbjct: 256 NLVAVSDFNVGAMENKGLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQYTGNRVTL 315
Query: 689 GWWNDLWLNEGFASYMQ 705
W L L EG + +
Sbjct: 316 RDWFQLTLKEGLTVHRE 332
>pdb|3RJO|A Chain A, Crystal Structure Of Erap1 Peptide Binding Domain
Length = 419
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 112/219 (51%), Gaps = 8/219 (3%)
Query: 696 LNEGFASY--MQYKALAKVEPTWEVLYIRCLLKDKLSEETWKVENKSYLEVNLKLVLNDL 753
LNE Y M+ + + +VE ++ IR LL+D + ++TW E S E L+ L L
Sbjct: 149 LNELIPMYKLMEKRDMNEVETQFKAFLIR-LLRDLIDKQTWTDEG-SVSERMLRSQLLLL 206
Query: 754 GCNFGAPSCLKKAADLLKNWFDSG--VKPEADLRGLVYRYGMENVGEEEWKKMWAKFREE 811
C C+++A + W +S + D+ V+ G ++ E W +++K++
Sbjct: 207 ACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGAQST--EGWDFLYSKYQFS 264
Query: 812 SNPQEQIKMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQDYFTVIVMVAGNPKGLPVAWDY 871
+ E+ ++ L + + L+ L+ + I++Q++ ++ ++ NP G P+AW +
Sbjct: 265 LSSTEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQILTLIGRNPVGYPLAWQF 324
Query: 872 VKKNWDYLVKRFGLNHRVFGRIIPSVCGKFTTQERLDEV 910
++KNW+ LV++F L ++ +F+T+ RL+EV
Sbjct: 325 LRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRTRLEEV 363
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 62/144 (43%), Gaps = 16/144 (11%)
Query: 910 VLDARDRSNLLDDAFNLAESQMIEYSTTFNLMKYMSKEDHFVPWTVVYNKLSRLDDKLYS 969
+ + DR++L+++AF L + +L Y+ E +P V+ L+ L
Sbjct: 102 AVSSNDRASLINNAFQLVSIGKLSIEKALDLSLYLKHETEIMP---VFQGLNEL------ 152
Query: 970 TEGHEDFKLSRLDDKLYSTEGHEDFKLYIRCLLKDKLSEETWKVENKSYLEVNLKLVLND 1029
+ +L +K E FK ++ LL+D + ++TW E S E L+ L
Sbjct: 153 ------IPMYKLMEKRDMNEVETQFKAFLIRLLRDLIDKQTWTDEG-SVSERMLRSQLLL 205
Query: 1030 LGCNFGAPSCLKKAADLLKNWFDS 1053
L C C+++A + W +S
Sbjct: 206 LACVHNYQPCVQRAEGYFRKWKES 229
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 361 GFPIITVKKSGDQVTFTQQRYLSNPNASYNPDDSPFKYLWDVYITMFTS-SDPSH 414
GFP+IT+ G V Q+ Y+ + + PD YLW V +T TS SD H
Sbjct: 1 GFPLITITVRGRNVHMKQEHYMKGSDGA--PDTG---YLWHVPLTFITSKSDMVH 50
>pdb|3CIA|A Chain A, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|B Chain B, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|C Chain C, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|D Chain D, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
Length = 605
Score = 76.3 bits (186), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 112/268 (41%), Gaps = 21/268 (7%)
Query: 78 STDDQPGVNQTT-VEFATTVPMSTYLVCFIVCDFDHLPSQDAKQGFPIKVYAREGQLEHM 136
S +++PG + F+ + YL+ V D + + + G + Y + +
Sbjct: 181 SANNEPGTERDGDYFFSMPQAIPPYLIAIGVGDLE-FKAMSHQTGIYAESYILDAAVAEF 239
Query: 137 EFAQKTAIAAINFYVEYFNISYPLPKLDLIAIPDFVSGAMEHWGLVTFREAAVLFKKGSS 196
+ Q A Y +Y Y L L+ P F G ME+ L V G
Sbjct: 240 DDTQAMIDKAEQMYGKYRWGRYDL----LMLPPSFPFGGMENPRLSFITPTVV---AGDK 292
Query: 197 SIVNKKRVAMTTSHELAHMWFGDLVTMGWWNDLWLNEGFASYMQYKALAKVEPTWEV--- 253
S+VN +HELAH W G+LVT W DLWLNEGF SY++ + + V T
Sbjct: 293 SLVN------LIAHELAHSWSGNLVTNESWRDLWLNEGFTSYVENRIMEAVFGTDRAVME 346
Query: 254 DTMFLTDMLHSTLQLDQTLSSHPIVQTVSNPDQITEIFDVISYQKGSSVIRMLENMMGEE 313
+ D+ L+LD + + I +PD + F + Y KG + LE G E
Sbjct: 347 QALGAQDLNAEILELDASDTQLYIDLKGRDPD---DAFSGVPYVKGQLFLMYLEEKFGRE 403
Query: 314 SFAHGVTSYLNEFQFKNAETNDLWSHLQ 341
F V Y + F++ T++ +L+
Sbjct: 404 RFDAFVLEYFDSHAFQSLGTDNFVKYLK 431
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 623 YRNMSEDLIAIP-DFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMW 681
YR DL+ +P F G ME+ L V G S+VN +HELAH W
Sbjct: 256 YRWGRYDLLMLPPSFPFGGMENPRLSFITPTVV---AGDKSLVN------LIAHELAHSW 306
Query: 682 FGDLVTMGWWNDLWLNEGFASYMQYKALAKVEPTWEVLYIRCLLKDKLSEETWKVE-NKS 740
G+LVT W DLWLNEGF SY++ + + V T + + L L+ E +++ + +
Sbjct: 307 SGNLVTNESWRDLWLNEGFTSYVENRIMEAVFGTDRAVMEQALGAQDLNAEILELDASDT 366
Query: 741 YLEVNLK 747
L ++LK
Sbjct: 367 QLYIDLK 373
>pdb|2XQ0|A Chain A, Structure Of Yeast Lta4 Hydrolase In Complex With Bestatin
Length = 632
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 108/256 (42%), Gaps = 17/256 (6%)
Query: 92 FATTVPMSTYLVCFIVCDFDHLPSQDAKQGFPIKVYAREGQLEHMEFAQKTAIAAINFYV 151
F VP+ YL+ D P + ++ Q E +K A
Sbjct: 196 FEQKVPIPAYLIGIASGDLSSAPIGPRSTVYTEPFRLKDCQWEFENDVEKFIQTAEKIIF 255
Query: 152 EYFNISYPLPKLDLIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHE 211
EY +Y + L+ + + G ME + TF +L S+ V +HE
Sbjct: 256 EYEWGTYDI----LVNVDSYPYGGMESPNM-TFATPTLLAHDRSNIDV--------IAHE 302
Query: 212 LAHMWFGDLVTMGWWNDLWLNEGFASYMQYKALAKV--EPTWEVDTMF-LTDMLHSTLQL 268
LAH W G+LVT WN WLNEG+ Y++ + + + EPT + +D+ +S +
Sbjct: 303 LAHSWSGNLVTNCSWNHFWLNEGWTVYLERRIIGAIHGEPTRHFSALIGWSDLQNSIDSM 362
Query: 269 DQTLSSHPIVQTVSNPDQITEIFDVISYQKGSSVIRMLENMMGEES-FAHGVTSYLNEFQ 327
+VQ +++ + F + Y+KG +++ LE ++G ++ F + Y +F
Sbjct: 363 KDPERFSTLVQNLNDNTDPDDAFSTVPYEKGFNLLFHLETILGGKAEFDPFIRHYFKKFA 422
Query: 328 FKNAETNDLWSHLQKF 343
K+ +T L +F
Sbjct: 423 KKSLDTFQFLDTLYEF 438
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 674 SHELAHMWFGDLVTMGWWNDLWLNEGFASYMQYKALAKV--EPT 715
+HELAH W G+LVT WN WLNEG+ Y++ + + + EPT
Sbjct: 300 AHELAHSWSGNLVTNCSWNHFWLNEGWTVYLERRIIGAIHGEPT 343
>pdb|2XPY|A Chain A, Structure Of Native Leukotriene A4 Hydrolase From
Saccharomyces Cerevisiae
pdb|2XPZ|A Chain A, Structure Of Native Yeast Lta4 Hydrolase
Length = 632
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 106/256 (41%), Gaps = 17/256 (6%)
Query: 92 FATTVPMSTYLVCFIVCDFDHLPSQDAKQGFPIKVYAREGQLEHMEFAQKTAIAAINFYV 151
F VP+ YL+ D P + ++ Q E +K A
Sbjct: 196 FEQKVPIPAYLIGIASGDLSSAPIGPRSTVYTEPFRLKDCQWEFENDVEKFIQTAEKIIF 255
Query: 152 EYFNISYPLPKLDLIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHE 211
EY +Y + L+ + + G ME + + + + ++ +HE
Sbjct: 256 EYEWGTYDI----LVNVDSYPYGGMESPNMTFATPTLIAHDRSNIDVI---------AHE 302
Query: 212 LAHMWFGDLVTMGWWNDLWLNEGFASYMQYKALAKV--EPTWEVDTMF-LTDMLHSTLQL 268
LAH W G+LVT WN WLNEG+ Y++ + + + EPT + +D+ +S +
Sbjct: 303 LAHSWSGNLVTNCSWNHFWLNEGWTVYLERRIIGAIHGEPTRHFSALIGWSDLQNSIDSM 362
Query: 269 DQTLSSHPIVQTVSNPDQITEIFDVISYQKGSSVIRMLENMMGEES-FAHGVTSYLNEFQ 327
+VQ +++ + F + Y+KG +++ LE ++G ++ F + Y +F
Sbjct: 363 KDPERFSTLVQNLNDNTDPDDAFSTVPYEKGFNLLFHLETILGGKAEFDPFIRHYFKKFA 422
Query: 328 FKNAETNDLWSHLQKF 343
K+ +T L +F
Sbjct: 423 KKSLDTFQFLDTLYEF 438
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 674 SHELAHMWFGDLVTMGWWNDLWLNEGFASYMQYKALAKV--EPT 715
+HELAH W G+LVT WN WLNEG+ Y++ + + + EPT
Sbjct: 300 AHELAHSWSGNLVTNCSWNHFWLNEGWTVYLERRIIGAIHGEPT 343
>pdb|2GTQ|A Chain A, Crystal Structure Of Aminopeptidase N From Human Pathogen
Neisseria Meningitidis
Length = 867
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 93/230 (40%), Gaps = 11/230 (4%)
Query: 100 TYLVCFIVCDF----DHLPSQDAKQGFPIKVYAREGQLEHMEFAQKTAIAAINFYVEYFN 155
+YL + D D+ + + I+ Y E + FA ++ A + F
Sbjct: 180 SYLFALVAGDLAVTEDYFTTXSGRN-VKIEFYTTEADKPKVGFAVESLKNAXKWDETRFG 238
Query: 156 ISYPLPKLDLIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHM 215
+ Y L ++A+ DF GA E+ GL F VL +++ + + + HE H
Sbjct: 239 LEYDLDIFXVVAVGDFNXGAXENKGLNIFNTKFVLADSRTATDTDFEGIESVVGHEYFHN 298
Query: 216 WFGDLVTMGWWNDLWLNEGFASY--MQYKALAKVEPTWEVDTMFLTDMLHSTLQLDQTLS 273
W G+ VT W L L EG + ++ ++ + L + D +
Sbjct: 299 WTGNRVTCRDWFQLSLKEGLTVFRDQEFSGDRASRAVRRIENIRL--LRQHQFPEDAGPT 356
Query: 274 SHPIVQTVSNPDQITEIFDVISYQKGSSVIRMLENMMGEESFAHGVTSYL 323
+HP+ ++ ++ + Y+KG+ V+R ++GEE F G Y
Sbjct: 357 AHPV--RPASYEEXNNFYTXTVYEKGAEVVRXYHTLLGEEGFQKGXKLYF 404
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 61/150 (40%), Gaps = 16/150 (10%)
Query: 630 LIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMG 689
++A+ DF GA E+ GL F VL +++ + + + HE H W G+ VT
Sbjct: 248 VVAVGDFNXGAXENKGLNIFNTKFVLADSRTATDTDFEGIESVVGHEYFHNWTGNRVTCR 307
Query: 690 WWNDLWLNEGFASY--MQYKALAKVEPTWEVLYIRCLLKDKLSEETW----KVENKSYLE 743
W L L EG + ++ + IR L + + E+ V SY E
Sbjct: 308 DWFQLSLKEGLTVFRDQEFSGDRASRAVRRIENIRLLRQHQFPEDAGPTAHPVRPASYEE 367
Query: 744 VNLKLVLNDLGCNFGAPSCLKKAADLLKNW 773
N NF + +K A++++ +
Sbjct: 368 XN----------NFYTXTVYEKGAEVVRXY 387
>pdb|1GW6|A Chain A, Structure Of Leukotriene A4 Hydrolase D375n Mutant
Length = 610
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 120/265 (45%), Gaps = 27/265 (10%)
Query: 79 TDDQPGVNQTTVEFATTVPMSTYLVCFIVCDFDHLPSQDAKQGFPIKVYAREGQLEH--M 136
T D ++ +F VP+ YL+ +V + + G V++ + Q+E
Sbjct: 178 TPDPEDPSRKIYKFIQKVPIPCYLIALVVGAL-----ESRQIGPRTLVWSEKEQVEKSAY 232
Query: 137 EFAQKTAIAAINFYVEYFNISYPLPKLDLIAIP-DFVSGAMEHWGLVTFREAAVLFKKGS 195
EF++ ++ I E Y + DL+ +P F G ME+ L TF +L G
Sbjct: 233 EFSETESMLKI---AEDLGGPYVWGQYDLLVLPPSFPYGGMENPCL-TFVTPTLL--AGD 286
Query: 196 SSIVNKKRVAMTTSHELAHMWFGDLVTMGWWNDLWLNEGFASYMQYKALAKV--EPTWEV 253
S+ N +HE++H W G+LVT W+ WLNEG Y++ ++ E
Sbjct: 287 KSLSN------VIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHF 340
Query: 254 DTMFLTDMLHSTLQLDQTLSSHPIVQTVSNPDQITE--IFDVISYQKGSSVIRMLENMM- 310
+ + L ++++ +HP + V + I + + Y+KG +++ LE ++
Sbjct: 341 NALGGWGELQNSVKTFG--ETHPFTKLVVDLTDIDPNVAYSSVPYEKGFALLFYLEQLLG 398
Query: 311 GEESFAHGVTSYLNEFQFKNAETND 335
G E F + +Y+ +F +K+ T+D
Sbjct: 399 GPEIFLGFLKAYVEKFSYKSITTDD 423
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 630 LIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMG 689
L+ P F G ME+ L TF +L G S+ N +HE++H W G+LVT
Sbjct: 259 LVLPPSFPYGGMENPCL-TFVTPTLL--AGDKSLSN------VIAHEISHSWTGNLVTNK 309
Query: 690 WWNDLWLNEGFASYMQYKALAKV 712
W+ WLNEG Y++ ++
Sbjct: 310 TWDHFWLNEGHTVYLERHICGRL 332
>pdb|3U9W|A Chain A, Structure Of Human Leukotriene A4 Hydrolase In Complex
With Inhibitor Sc57461a
Length = 608
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 120/265 (45%), Gaps = 27/265 (10%)
Query: 79 TDDQPGVNQTTVEFATTVPMSTYLVCFIVCDFDHLPSQDAKQGFPIKVYAREGQLEH--M 136
T D ++ +F VP+ YL+ +V + + G V++ + Q+E
Sbjct: 176 TPDPEDPSRKIYKFIQKVPIPCYLIALVVGAL-----ESRQIGPRTLVWSEKEQVEKSAY 230
Query: 137 EFAQKTAIAAINFYVEYFNISYPLPKLDLIAIP-DFVSGAMEHWGLVTFREAAVLFKKGS 195
EF++ ++ I E Y + DL+ +P F G ME+ L TF +L G
Sbjct: 231 EFSETESMLKI---AEDLGGPYVWGQYDLLVLPPSFPYGGMENPCL-TFVTPTLL--AGD 284
Query: 196 SSIVNKKRVAMTTSHELAHMWFGDLVTMGWWNDLWLNEGFASYMQYKALAKV--EPTWEV 253
S+ N +HE++H W G+LVT W+ WLNEG Y++ ++ E
Sbjct: 285 KSLSN------VIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHF 338
Query: 254 DTMFLTDMLHSTLQLDQTLSSHPIVQTVSNPDQITE--IFDVISYQKGSSVIRMLENMM- 310
+ + L ++++ +HP + V + I + + Y+KG +++ LE ++
Sbjct: 339 NALGGWGELQNSVKTFG--ETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLG 396
Query: 311 GEESFAHGVTSYLNEFQFKNAETND 335
G E F + +Y+ +F +K+ T+D
Sbjct: 397 GPEIFLGFLKAYVEKFSYKSITTDD 421
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 630 LIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMG 689
L+ P F G ME+ L TF +L G S+ N +HE++H W G+LVT
Sbjct: 257 LVLPPSFPYGGMENPCL-TFVTPTLL--AGDKSLSN------VIAHEISHSWTGNLVTNK 307
Query: 690 WWNDLWLNEGFASYMQYKALAKV 712
W+ WLNEG Y++ ++
Sbjct: 308 TWDHFWLNEGHTVYLERHICGRL 330
>pdb|2R59|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor Rb3041
pdb|3B7R|L Chain L, Leukotriene A4 Hydrolase Complexed With Inhibitor Rb3040
pdb|3B7U|X Chain X, Leukotriene A4 Hydrolase Complexed With Kelatorphan
Length = 616
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 120/265 (45%), Gaps = 27/265 (10%)
Query: 79 TDDQPGVNQTTVEFATTVPMSTYLVCFIVCDFDHLPSQDAKQGFPIKVYAREGQLEH--M 136
T D ++ +F VP+ YL+ +V + + G V++ + Q+E
Sbjct: 184 TPDPEDPSRKIYKFIQKVPIPCYLIALVVGAL-----ESRQIGPRTLVWSEKEQVEKSAY 238
Query: 137 EFAQKTAIAAINFYVEYFNISYPLPKLDLIAIP-DFVSGAMEHWGLVTFREAAVLFKKGS 195
EF++ ++ I E Y + DL+ +P F G ME+ L TF +L G
Sbjct: 239 EFSETESMLKI---AEDLGGPYVWGQYDLLVLPPSFPYGGMENPCL-TFVTPTLL--AGD 292
Query: 196 SSIVNKKRVAMTTSHELAHMWFGDLVTMGWWNDLWLNEGFASYMQYKALAKV--EPTWEV 253
S+ N +HE++H W G+LVT W+ WLNEG Y++ ++ E
Sbjct: 293 KSLSN------VIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHF 346
Query: 254 DTMFLTDMLHSTLQLDQTLSSHPIVQTVSNPDQITE--IFDVISYQKGSSVIRMLENMM- 310
+ + L ++++ +HP + V + I + + Y+KG +++ LE ++
Sbjct: 347 NALGGWGELQNSVKTFG--ETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLG 404
Query: 311 GEESFAHGVTSYLNEFQFKNAETND 335
G E F + +Y+ +F +K+ T+D
Sbjct: 405 GPEIFLGFLKAYVEKFSYKSITTDD 429
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 630 LIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMG 689
L+ P F G ME+ L TF +L G S+ N +HE++H W G+LVT
Sbjct: 265 LVLPPSFPYGGMENPCL-TFVTPTLL--AGDKSLSN------VIAHEISHSWTGNLVTNK 315
Query: 690 WWNDLWLNEGFASYMQYKALAKV 712
W+ WLNEG Y++ ++
Sbjct: 316 TWDHFWLNEGHTVYLERHICGRL 338
>pdb|3CHO|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With 2-Amino-N-[4-(Phenylmethoxy)phenyl]-Acetamide
pdb|3CHP|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With (3s)-3-Amino-4-Oxo-4-[(4-Phenylmethoxyphenyl)
Amino]butanoic Acid
pdb|3CHQ|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With N5-[4-(Phenylmethoxy)phenyl]-L-Glutamine
pdb|3CHR|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With 4-Amino-N-[4-(Phenylmethoxy)phenyl]-Butanamide
pdb|3CHS|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With (2s)-2-Amino-5-[[4-[(2s)-2-Hydroxy-2-Phenyl-
Ethoxy]phenyl]amino]-5-Oxo-Pentanoic Acid
Length = 610
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 120/265 (45%), Gaps = 27/265 (10%)
Query: 79 TDDQPGVNQTTVEFATTVPMSTYLVCFIVCDFDHLPSQDAKQGFPIKVYAREGQLEH--M 136
T D ++ +F VP+ YL+ +V + + G V++ + Q+E
Sbjct: 178 TPDPEDPSRKIYKFIQKVPIPCYLIALVVGAL-----ESRQIGPRTLVWSEKEQVEKSAY 232
Query: 137 EFAQKTAIAAINFYVEYFNISYPLPKLDLIAIP-DFVSGAMEHWGLVTFREAAVLFKKGS 195
EF++ ++ I E Y + DL+ +P F G ME+ L TF +L G
Sbjct: 233 EFSETESMLKI---AEDLGGPYVWGQYDLLVLPPSFPYGGMENPCL-TFVTPTLL--AGD 286
Query: 196 SSIVNKKRVAMTTSHELAHMWFGDLVTMGWWNDLWLNEGFASYMQYKALAKV--EPTWEV 253
S+ N +HE++H W G+LVT W+ WLNEG Y++ ++ E
Sbjct: 287 KSLSN------VIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHF 340
Query: 254 DTMFLTDMLHSTLQLDQTLSSHPIVQTVSNPDQITE--IFDVISYQKGSSVIRMLENMM- 310
+ + L ++++ +HP + V + I + + Y+KG +++ LE ++
Sbjct: 341 NALGGWGELQNSVKTFG--ETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLG 398
Query: 311 GEESFAHGVTSYLNEFQFKNAETND 335
G E F + +Y+ +F +K+ T+D
Sbjct: 399 GPEIFLGFLKAYVEKFSYKSITTDD 423
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 630 LIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMG 689
L+ P F G ME+ L TF +L G S+ N +HE++H W G+LVT
Sbjct: 259 LVLPPSFPYGGMENPCL-TFVTPTLL--AGDKSLSN------VIAHEISHSWTGNLVTNK 309
Query: 690 WWNDLWLNEGFASYMQYKALAKV 712
W+ WLNEG Y++ ++
Sbjct: 310 TWDHFWLNEGHTVYLERHICGRL 332
>pdb|1SQM|A Chain A, Structure Of [r563a] Leukotriene A4 Hydrolase
Length = 610
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 120/265 (45%), Gaps = 27/265 (10%)
Query: 79 TDDQPGVNQTTVEFATTVPMSTYLVCFIVCDFDHLPSQDAKQGFPIKVYAREGQLEH--M 136
T D ++ +F VP+ YL+ +V + + G V++ + Q+E
Sbjct: 178 TPDPEDPSRKIYKFIQKVPIPCYLIALVVGAL-----ESRQIGPRTLVWSEKEQVEKSAY 232
Query: 137 EFAQKTAIAAINFYVEYFNISYPLPKLDLIAIP-DFVSGAMEHWGLVTFREAAVLFKKGS 195
EF++ ++ I E Y + DL+ +P F G ME+ L TF +L G
Sbjct: 233 EFSETESMLKI---AEDLGGPYVWGQYDLLVLPPSFPYGGMENPCL-TFVTPTLL--AGD 286
Query: 196 SSIVNKKRVAMTTSHELAHMWFGDLVTMGWWNDLWLNEGFASYMQYKALAKV--EPTWEV 253
S+ N +HE++H W G+LVT W+ WLNEG Y++ ++ E
Sbjct: 287 KSLSN------VIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHF 340
Query: 254 DTMFLTDMLHSTLQLDQTLSSHPIVQTVSNPDQITE--IFDVISYQKGSSVIRMLENMM- 310
+ + L ++++ +HP + V + I + + Y+KG +++ LE ++
Sbjct: 341 NALGGWGELQNSVKTFG--ETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLG 398
Query: 311 GEESFAHGVTSYLNEFQFKNAETND 335
G E F + +Y+ +F +K+ T+D
Sbjct: 399 GPEIFLGFLKAYVEKFSYKSITTDD 423
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 630 LIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMG 689
L+ P F G ME+ L TF +L G S+ N +HE++H W G+LVT
Sbjct: 259 LVLPPSFPYGGMENPCL-TFVTPTLL--AGDKSLSN------VIAHEISHSWTGNLVTNK 309
Query: 690 WWNDLWLNEGFASYMQYKALAKV 712
W+ WLNEG Y++ ++
Sbjct: 310 TWDHFWLNEGHTVYLERHICGRL 332
>pdb|1HS6|A Chain A, Structure Of Leukotriene A4 Hydrolase Complexed With
Bestatin.
pdb|2VJ8|A Chain A, Complex Of Human Leukotriene A4 Hydrolase With A
Hydroxamic Acid Inhibitor
pdb|3FTS|A Chain A, Leukotriene A4 Hydrolase In Complex With Resveratrol
pdb|3FTU|A Chain A, Leukotriene A4 Hydrolase In Complex With
Dihydroresveratrol
pdb|3FTV|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment N-
(Pyridin-3-Ylmethyl)aniline
pdb|3FTW|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragments N-
(Pyridin-3-Ylmethyl)aniline And Acetate
pdb|3FTX|A Chain A, Leukotriene A4 Hydrolase In Complex With
Dihydroresveratrol And Bestatin
pdb|3FTY|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 3-
(Benzyloxy)pyridin-2-Amine
pdb|3FU0|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 4-(4-
Fluorobenzoyl)pyridine
pdb|3FU3|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 4-(2-
Amino-1,3-Thiazol-4-Yl)phenol
pdb|3FU5|A Chain A, Leukotriene A4 Hydrolase In Complex With (5-Thiophen-2-
Ylthiophen-2-Yl)methylamine
pdb|3FU6|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment (4-
Thiophen-2-Ylphenyl)methanamine
pdb|3FUD|A Chain A, Leukotriene A4 Hydrolase In Complex With N-Methyl-1-(2-
Thiophen-2-Ylphenyl)methanamine
pdb|3FUE|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Chloroindole And Bestatin
pdb|3FUF|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Fluoroindole And Bestatin
pdb|3FUH|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Hydroxyindole And Bestatin
pdb|3FUI|A Chain A, Leukotriene A4 Hydrolase In Complex With N-Benzyl-4-[(2r)-
Pyrrolidin-2-Ylmethoxy]aniline
pdb|3FUJ|A Chain A, Leukotriene A4 Hydrolase In Complex With
5-[2-(1h-Pyrrol-1- Yl)ethoxy]-1h-Indole
pdb|3FUK|A Chain A, Leukotriene A4 Hydrolase In Complex With 1-[2-(1h-Indol-5-
Yloxy)ethyl]piperidine-4-Carboxylic Acid
pdb|3FUM|A Chain A, Leukotriene A4 Hydrolase In Complex With
(R)-Pyridin-4-Yl[4-
(2-Pyrrolidin-1-Ylethoxy)phenyl]methanol
pdb|3FUN|A Chain A, Leukotriene A4 Hydrolase In Complex With {4-[(2r)-
Pyrrolidin-2-Ylmethoxy]phenyl}(4-Thiophen-3-Ylphenyl)
Methanone
pdb|3FH5|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor
(2r)-2-[(4- Benzylphenoxy)methyl]pyrrolidine.
pdb|3FH7|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor
4-[(2s)-2-{[4-(4-
Chlorophenoxy)phenoxy]methyl}pyrrolidin-1-Yl]butanoate.
pdb|3FH8|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor 1-[2-(4-
Benzylphenoxy)ethyl]pyrrolidine.
pdb|3FHE|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor N-[3-(4-
Benzylphenoxy)propyl]-N-Methyl-Beta-Alanine.
pdb|3FTZ|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment
2-(pyridin-3- Ylmethoxy)aniline
pdb|3FUL|A Chain A, Leukotriene A4 Hydrolase In Complex With
Pyridin-4-Yl[4-(2-Pyrrolidin-
1-Ylethoxy)phenyl]methanone
pdb|4DPR|A Chain A, Structure Of Human Leukotriene A4 Hydrolase In Complex
With Inhibitor Captopril
Length = 611
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 120/265 (45%), Gaps = 27/265 (10%)
Query: 79 TDDQPGVNQTTVEFATTVPMSTYLVCFIVCDFDHLPSQDAKQGFPIKVYAREGQLEH--M 136
T D ++ +F VP+ YL+ +V + + G V++ + Q+E
Sbjct: 179 TPDPEDPSRKIYKFIQKVPIPCYLIALVVGAL-----ESRQIGPRTLVWSEKEQVEKSAY 233
Query: 137 EFAQKTAIAAINFYVEYFNISYPLPKLDLIAIP-DFVSGAMEHWGLVTFREAAVLFKKGS 195
EF++ ++ I E Y + DL+ +P F G ME+ L TF +L G
Sbjct: 234 EFSETESMLKI---AEDLGGPYVWGQYDLLVLPPSFPYGGMENPCL-TFVTPTLL--AGD 287
Query: 196 SSIVNKKRVAMTTSHELAHMWFGDLVTMGWWNDLWLNEGFASYMQYKALAKV--EPTWEV 253
S+ N +HE++H W G+LVT W+ WLNEG Y++ ++ E
Sbjct: 288 KSLSN------VIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHF 341
Query: 254 DTMFLTDMLHSTLQLDQTLSSHPIVQTVSNPDQITE--IFDVISYQKGSSVIRMLENMM- 310
+ + L ++++ +HP + V + I + + Y+KG +++ LE ++
Sbjct: 342 NALGGWGELQNSVKTFG--ETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLG 399
Query: 311 GEESFAHGVTSYLNEFQFKNAETND 335
G E F + +Y+ +F +K+ T+D
Sbjct: 400 GPEIFLGFLKAYVEKFSYKSITTDD 424
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 630 LIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMG 689
L+ P F G ME+ L TF +L G S+ N +HE++H W G+LVT
Sbjct: 260 LVLPPSFPYGGMENPCL-TFVTPTLL--AGDKSLSN------VIAHEISHSWTGNLVTNK 310
Query: 690 WWNDLWLNEGFASYMQYKALAKV 712
W+ WLNEG Y++ ++
Sbjct: 311 TWDHFWLNEGHTVYLERHICGRL 333
>pdb|3B7S|A Chain A, [e296q]lta4h In Complex With Rsr Substrate
pdb|3B7T|A Chain A, [e296q]lta4h In Complex With Arg-Ala-Arg Substrate
Length = 616
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 120/265 (45%), Gaps = 27/265 (10%)
Query: 79 TDDQPGVNQTTVEFATTVPMSTYLVCFIVCDFDHLPSQDAKQGFPIKVYAREGQLEH--M 136
T D ++ +F VP+ YL+ +V + + G V++ + Q+E
Sbjct: 184 TPDPEDPSRKIYKFIQKVPIPCYLIALVVGAL-----ESRQIGPRTLVWSEKEQVEKSAY 238
Query: 137 EFAQKTAIAAINFYVEYFNISYPLPKLDLIAIP-DFVSGAMEHWGLVTFREAAVLFKKGS 195
EF++ ++ I E Y + DL+ +P F G ME+ L TF +L G
Sbjct: 239 EFSETESMLKI---AEDLGGPYVWGQYDLLVLPPSFPYGGMENPCL-TFVTPTLL--AGD 292
Query: 196 SSIVNKKRVAMTTSHELAHMWFGDLVTMGWWNDLWLNEGFASYMQYKALAKV--EPTWEV 253
S+ N +H+++H W G+LVT W+ WLNEG Y++ ++ E
Sbjct: 293 KSLSN------VIAHQISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHF 346
Query: 254 DTMFLTDMLHSTLQLDQTLSSHPIVQTVSNPDQITE--IFDVISYQKGSSVIRMLENMM- 310
+ + L ++++ +HP + V + I + + Y+KG +++ LE ++
Sbjct: 347 NALGGWGELQNSVKTFG--ETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLG 404
Query: 311 GEESFAHGVTSYLNEFQFKNAETND 335
G E F + +Y+ +F +K+ T+D
Sbjct: 405 GPEIFLGFLKAYVEKFSYKSITTDD 429
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 630 LIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMG 689
L+ P F G ME+ L TF +L G S+ N +H+++H W G+LVT
Sbjct: 265 LVLPPSFPYGGMENPCL-TFVTPTLL--AGDKSLSN------VIAHQISHSWTGNLVTNK 315
Query: 690 WWNDLWLNEGFASYMQYKALAKV 712
W+ WLNEG Y++ ++
Sbjct: 316 TWDHFWLNEGHTVYLERHICGRL 338
>pdb|1H19|A Chain A, Structure Of [e271q] Leukotriene A4 Hydrolase
Length = 611
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 120/265 (45%), Gaps = 27/265 (10%)
Query: 79 TDDQPGVNQTTVEFATTVPMSTYLVCFIVCDFDHLPSQDAKQGFPIKVYAREGQLEH--M 136
T D ++ +F VP+ YL+ +V + + G V++ + Q+E
Sbjct: 179 TPDPEDPSRKIYKFIQKVPIPCYLIALVVGAL-----ESRQIGPRTLVWSEKEQVEKSAY 233
Query: 137 EFAQKTAIAAINFYVEYFNISYPLPKLDLIAIP-DFVSGAMEHWGLVTFREAAVLFKKGS 195
EF++ ++ I E Y + DL+ +P F G M++ L TF +L G
Sbjct: 234 EFSETESMLKI---AEDLGGPYVWGQYDLLVLPPSFPYGGMQNPCL-TFVTPTLL--AGD 287
Query: 196 SSIVNKKRVAMTTSHELAHMWFGDLVTMGWWNDLWLNEGFASYMQYKALAKV--EPTWEV 253
S+ N +HE++H W G+LVT W+ WLNEG Y++ ++ E
Sbjct: 288 KSLSN------VIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHF 341
Query: 254 DTMFLTDMLHSTLQLDQTLSSHPIVQTVSNPDQITE--IFDVISYQKGSSVIRMLENMM- 310
+ + L ++++ +HP + V + I + + Y+KG +++ LE ++
Sbjct: 342 NALGGWGELQNSVKTFG--ETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLG 399
Query: 311 GEESFAHGVTSYLNEFQFKNAETND 335
G E F + +Y+ +F +K+ T+D
Sbjct: 400 GPEIFLGFLKAYVEKFSYKSITTDD 424
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 630 LIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMG 689
L+ P F G M++ L TF +L G S+ N +HE++H W G+LVT
Sbjct: 260 LVLPPSFPYGGMQNPCL-TFVTPTLL--AGDKSLSN------VIAHEISHSWTGNLVTNK 310
Query: 690 WWNDLWLNEGFASYMQYKALAKV 712
W+ WLNEG Y++ ++
Sbjct: 311 TWDHFWLNEGHTVYLERHICGRL 333
>pdb|3IJ6|A Chain A, Crystal Structure Of An Uncharacterized Metal-Dependent
Hydrolase From Lactobacillus Acidophilus
pdb|3IJ6|B Chain B, Crystal Structure Of An Uncharacterized Metal-Dependent
Hydrolase From Lactobacillus Acidophilus
pdb|3IJ6|C Chain C, Crystal Structure Of An Uncharacterized Metal-Dependent
Hydrolase From Lactobacillus Acidophilus
pdb|3IJ6|D Chain D, Crystal Structure Of An Uncharacterized Metal-Dependent
Hydrolase From Lactobacillus Acidophilus
Length = 312
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 16/88 (18%)
Query: 842 DEKNIRSQDYFTVIVMVAGNPKGLPVAWDYVKKNWDYLVKRFGLNHRVFG-----RIIPS 896
DEK+ + F V + GN L +A DY +G++H +FG ++PS
Sbjct: 223 DEKHAQDFKKFYVDTAILGNTPALQLAIDY-----------YGIDHVLFGTDAPFAVMPS 271
Query: 897 VCGKFTTQERLDEVLDARDRSNLLDDAF 924
+ TQ D + +D+ + D +
Sbjct: 272 GADQIITQAINDLTISDKDKQKIFHDNY 299
>pdb|2Q9F|A Chain A, Crystal Structure Of Human Cytochrome P450 46a1 In Complex
With Cholesterol-3-Sulphate
pdb|2Q9G|A Chain A, Crystal Structure Of Human Cytochrome P450 46a1
pdb|3MDM|A Chain A, Thioperamide Complex Of Cytochrome P450 46a1
pdb|3MDR|A Chain A, Tranylcypromine Complex Of Cytochrome P450 46a1
pdb|3MDR|B Chain B, Tranylcypromine Complex Of Cytochrome P450 46a1
pdb|3MDT|A Chain A, Voriconazole Complex Of Cytochrome P450 46a1
pdb|3MDT|B Chain B, Voriconazole Complex Of Cytochrome P450 46a1
pdb|3MDV|A Chain A, Clotrimazole Complex Of Cytochrome P450 46a1
pdb|3MDV|B Chain B, Clotrimazole Complex Of Cytochrome P450 46a1
pdb|4ENH|A Chain A, Crystal Structure Of Human Cytochrome P450 Cyp46a1 With
Fluvoxamine Bound
pdb|4FIA|A Chain A, Crystal Structure Of Human Cyp46a1 P450 With Bicalutamide
Bound
Length = 456
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 275 HPIVQTVSNPDQITEIFDVISYQKGSSVIRMLENMMGEESFAHGVTSYLN-EFQFKNAET 333
H V++P+ + + Y K S + R L+ + GE F G+ S N E K
Sbjct: 33 HKTSVIVTSPESVKKFLMSTKYNKDSKMYRALQTVFGERLFGQGLVSECNYERWHKQRRV 92
Query: 334 NDLWSHLQKFANNMSVTSVMDTY 356
DL F+ + S+ S+M+T+
Sbjct: 93 IDL-----AFSRS-SLVSLMETF 109
>pdb|1NI2|A Chain A, Structure Of The Active Ferm Domain Of Ezrin
pdb|1NI2|B Chain B, Structure Of The Active Ferm Domain Of Ezrin
Length = 296
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 323 LNEFQFKNAETNDLWSHLQKFANNMSVTSVMDTYTRQMGFPIITVKKSGDQVTFTQQRYL 382
+N F+ KN + DLW + A +++ D T ++GFP ++ ++F ++++
Sbjct: 202 INYFEIKNKKGTDLWLGVD--ALGLNIYEKDDKLTPKIGFPWSEIR----NISFNDKKFV 255
Query: 383 SNPNASYNPD 392
P PD
Sbjct: 256 IKPIDKKAPD 265
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,611,495
Number of Sequences: 62578
Number of extensions: 1379009
Number of successful extensions: 3674
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3511
Number of HSP's gapped (non-prelim): 106
length of query: 1094
length of database: 14,973,337
effective HSP length: 109
effective length of query: 985
effective length of database: 8,152,335
effective search space: 8030049975
effective search space used: 8030049975
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)