Query psy13037
Match_columns 1094
No_of_seqs 471 out of 3313
Neff 8.9
Searched_HMMs 46136
Date Fri Aug 16 17:50:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13037.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13037hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1046|consensus 100.0 6E-103 1E-107 971.1 26.2 714 13-946 154-868 (882)
2 TIGR02412 pepN_strep_liv amino 100.0 1E-83 2.2E-88 802.2 30.9 688 11-933 117-820 (831)
3 KOG1046|consensus 100.0 2.5E-76 5.4E-81 733.4 42.3 570 466-1091 27-740 (882)
4 COG0308 PepN Aminopeptidase N 100.0 1.3E-65 2.9E-70 638.4 36.5 377 5-411 127-507 (859)
5 PRK14015 pepN aminopeptidase N 100.0 8.4E-64 1.8E-68 614.6 38.7 362 13-408 120-494 (875)
6 TIGR02414 pepN_proteo aminopep 100.0 5.1E-64 1.1E-68 614.4 35.4 364 12-409 106-482 (863)
7 TIGR02411 leuko_A4_hydro leuko 100.0 2.8E-58 6.1E-63 550.8 27.5 327 3-370 115-453 (601)
8 PF01433 Peptidase_M1: Peptida 100.0 4E-52 8.6E-57 485.7 17.7 273 6-299 118-390 (390)
9 TIGR02412 pepN_strep_liv amino 100.0 2.7E-48 5.9E-53 484.4 37.5 541 474-1091 14-699 (831)
10 KOG1047|consensus 100.0 1.2E-46 2.5E-51 412.1 17.5 329 1-367 118-459 (613)
11 PF01433 Peptidase_M1: Peptida 100.0 3.3E-39 7.2E-44 376.8 19.4 266 469-734 1-362 (390)
12 KOG1932|consensus 100.0 3.4E-33 7.3E-38 327.6 24.3 320 8-371 168-507 (1180)
13 TIGR02411 leuko_A4_hydro leuko 100.0 5.7E-32 1.2E-36 324.4 22.1 234 471-718 8-328 (601)
14 COG0308 PepN Aminopeptidase N 100.0 2E-30 4.4E-35 323.6 32.0 250 470-732 13-373 (859)
15 TIGR02414 pepN_proteo aminopep 100.0 8.8E-30 1.9E-34 313.2 20.7 217 471-706 4-320 (863)
16 PRK14015 pepN aminopeptidase N 100.0 9.1E-29 2E-33 305.2 16.0 226 472-716 17-344 (875)
17 PF11838 ERAP1_C: ERAP1-like C 99.9 4.4E-21 9.5E-26 218.3 16.4 189 859-1091 5-200 (324)
18 PF11838 ERAP1_C: ERAP1-like C 99.8 6E-24 1.3E-28 241.8 -16.8 295 568-918 3-306 (324)
19 KOG1047|consensus 99.6 7.9E-14 1.7E-18 154.9 17.9 165 627-803 254-425 (613)
20 COG3975 Predicted protease wit 99.5 2.2E-12 4.8E-17 143.5 19.9 312 49-381 107-448 (558)
21 PF13485 Peptidase_MA_2: Pepti 99.1 2.8E-10 6.1E-15 110.2 7.9 107 201-322 22-128 (128)
22 PF10460 Peptidase_M30: Peptid 97.6 0.0027 5.8E-08 70.8 17.4 144 201-360 136-285 (366)
23 PF05299 Peptidase_M61: M61 gl 97.1 0.00029 6.4E-09 65.8 2.8 45 204-248 4-59 (122)
24 PF13485 Peptidase_MA_2: Pepti 97.0 0.00013 2.9E-09 70.1 -0.8 43 664-706 20-62 (128)
25 KOG1932|consensus 95.5 0.13 2.8E-06 63.8 13.0 105 477-581 28-165 (1180)
26 PF07607 DUF1570: Protein of u 94.4 0.024 5.2E-07 53.8 2.2 39 206-244 3-43 (128)
27 PF04450 BSP: Peptidase of pla 92.9 2 4.4E-05 44.7 13.4 169 138-355 25-204 (205)
28 PF10026 DUF2268: Predicted Zn 91.2 0.65 1.4E-05 48.3 7.6 100 142-248 4-113 (195)
29 PF07607 DUF1570: Protein of u 89.1 0.061 1.3E-06 51.1 -1.9 39 670-708 2-42 (128)
30 PF10460 Peptidase_M30: Peptid 81.7 0.49 1.1E-05 53.2 0.3 70 643-715 116-189 (366)
31 PRK04860 hypothetical protein; 78.9 2.5 5.4E-05 42.0 4.2 72 139-217 5-76 (160)
32 COG4324 Predicted aminopeptida 76.2 2.6 5.6E-05 44.0 3.5 41 201-247 194-234 (376)
33 PF04450 BSP: Peptidase of pla 70.4 2.1 4.7E-05 44.5 1.3 39 664-707 91-131 (205)
34 PF10023 DUF2265: Predicted am 68.8 4.5 9.8E-05 45.0 3.4 42 201-248 162-203 (337)
35 PF10026 DUF2268: Predicted Zn 67.7 5.8 0.00013 41.2 3.9 73 643-717 41-118 (195)
36 PF01447 Peptidase_M4: Thermol 66.3 14 0.0003 36.5 6.0 74 134-215 67-146 (150)
37 COG3975 Predicted protease wit 64.2 4.1 9E-05 47.3 2.1 72 630-706 212-295 (558)
38 PF01863 DUF45: Protein of unk 63.0 18 0.00039 37.8 6.6 93 137-256 108-200 (205)
39 smart00731 SprT SprT homologue 62.1 9.2 0.0002 37.6 3.9 68 145-218 5-73 (146)
40 PF05299 Peptidase_M61: M61 gl 61.8 2.3 5E-05 40.1 -0.4 38 669-706 4-52 (122)
41 COG2719 SpoVR Uncharacterized 59.7 58 0.0013 37.2 9.8 82 208-307 253-335 (495)
42 PF13699 DUF4157: Domain of un 50.2 42 0.0009 29.1 5.5 67 145-216 5-73 (79)
43 PF12725 DUF3810: Protein of u 49.6 20 0.00044 40.3 4.4 33 204-248 196-228 (318)
44 PF03272 Enhancin: Viral enhan 47.5 7.2E+02 0.016 31.8 19.4 128 207-356 239-377 (775)
45 PF12315 DUF3633: Protein of u 47.3 27 0.00059 35.9 4.5 41 205-247 94-134 (212)
46 PRK04351 hypothetical protein; 44.9 27 0.00059 34.4 4.0 60 148-215 12-72 (149)
47 COG4783 Putative Zn-dependent 42.5 18 0.0004 41.8 2.7 57 158-219 89-145 (484)
48 PF10263 SprT-like: SprT-like 40.8 41 0.00089 33.4 4.7 19 200-218 56-74 (157)
49 PF06114 DUF955: Domain of unk 38.9 27 0.00058 32.4 3.0 32 186-221 28-59 (122)
50 COG1451 Predicted metal-depend 37.6 1.2E+02 0.0027 32.1 7.9 93 137-256 119-211 (223)
51 PRK05457 heat shock protein Ht 36.7 42 0.00091 37.1 4.4 69 143-220 79-150 (284)
52 PRK03982 heat shock protein Ht 36.6 49 0.0011 36.7 5.0 67 143-220 70-141 (288)
53 cd04269 ZnMc_adamalysin_II_lik 34.7 1.1E+02 0.0025 31.4 7.1 15 202-216 129-143 (194)
54 PF01435 Peptidase_M48: Peptid 34.6 38 0.00081 35.8 3.6 24 200-223 85-108 (226)
55 COG3227 LasB Zinc metalloprote 32.3 89 0.0019 36.3 6.0 111 130-247 265-381 (507)
56 PF10023 DUF2265: Predicted am 31.7 21 0.00045 39.9 1.0 36 667-709 163-199 (337)
57 PRK04897 heat shock protein Ht 30.8 62 0.0013 36.1 4.5 69 143-220 82-153 (298)
58 PRK03072 heat shock protein Ht 30.1 55 0.0012 36.3 4.0 70 142-220 71-143 (288)
59 COG4324 Predicted aminopeptida 29.7 23 0.00051 37.3 0.9 37 666-709 194-231 (376)
60 PRK01345 heat shock protein Ht 29.3 69 0.0015 36.1 4.6 69 143-220 69-140 (317)
61 PRK03001 M48 family peptidase; 28.7 74 0.0016 35.2 4.7 66 143-219 69-139 (283)
62 PF09768 Peptidase_M76: Peptid 27.7 1.7E+02 0.0036 29.7 6.5 61 145-217 20-84 (173)
63 PRK02391 heat shock protein Ht 26.6 75 0.0016 35.3 4.3 69 143-220 78-149 (296)
64 PHA02456 zinc metallopeptidase 26.4 35 0.00077 30.8 1.3 14 204-217 79-92 (141)
65 COG0501 HtpX Zn-dependent prot 25.8 80 0.0017 35.1 4.4 68 147-222 105-175 (302)
66 PF12174 RST: RCD1-SRO-TAF4 (R 25.6 1.8E+02 0.0039 24.6 5.3 47 299-346 11-57 (70)
67 cd04272 ZnMc_salivary_gland_MP 25.4 1.6E+02 0.0035 31.1 6.4 14 203-216 144-157 (220)
68 cd04279 ZnMc_MMP_like_1 Zinc-d 24.4 2.8E+02 0.0061 27.3 7.6 37 122-158 2-41 (156)
69 COG2856 Predicted Zn peptidase 24.3 2.2E+02 0.0047 30.0 6.8 38 206-243 74-116 (213)
70 PF08014 DUF1704: Domain of un 23.9 3E+02 0.0065 31.4 8.5 85 144-243 116-213 (349)
71 KOG3314|consensus 23.6 2.7E+02 0.0058 27.5 6.6 57 152-218 48-105 (194)
72 PF13574 Reprolysin_2: Metallo 22.4 46 0.001 33.7 1.5 13 204-216 111-123 (173)
73 KOG2661|consensus 22.4 1.8E+02 0.0038 32.3 5.7 22 199-220 270-291 (424)
74 smart00731 SprT SprT homologue 22.2 18 0.00039 35.6 -1.5 39 644-682 34-72 (146)
75 PRK02870 heat shock protein Ht 21.9 1.4E+02 0.003 33.9 5.2 16 200-215 169-184 (336)
76 PRK01265 heat shock protein Ht 21.7 1.2E+02 0.0025 34.3 4.6 67 143-219 85-155 (324)
77 PF08325 WLM: WLM domain; Int 21.3 3.3E+02 0.0072 27.9 7.4 25 196-220 74-98 (186)
78 PF01431 Peptidase_M13: Peptid 21.0 87 0.0019 32.6 3.3 33 190-222 22-54 (206)
79 PF01421 Reprolysin: Reprolysi 21.0 1.2E+02 0.0025 31.5 4.2 15 201-215 128-142 (199)
No 1
>KOG1046|consensus
Probab=100.00 E-value=6e-103 Score=971.10 Aligned_cols=714 Identities=36% Similarity=0.636 Sum_probs=637.0
Q ss_pred ceEEEEeeccceeEEEEeeceeecceeeeeeeeccCCCccceeeEEEEEecCCCcEEeecCCccccccCCCCCCeEEEEE
Q psy13037 13 KLVTLLVCTSAVLFVACVLSVTLLLLTRYISYHSSQPVRTHETWVRRSFDGGGGASGASEGPTKKSTDDQPGVNQTTVEF 92 (1094)
Q Consensus 13 ~~~t~~~p~~ar~~fPC~D~~~~~~~f~~~~~~~~~p~~~~~~~~~i~i~~p~~~~a~Sng~~~~~~~~~~~~~~~~~~F 92 (1094)
-..|.++|+.||..|||+|+|..|++| .|++.+|++++|+|||++++.. +.++++++++|
T Consensus 154 ~~~Tqfept~AR~~FPCfDeP~~KAtF------------------~Itl~hp~~~~aLSNm~v~~~~--~~~~~~~~~~F 213 (882)
T KOG1046|consen 154 IAATQFEPTDARRAFPCFDEPAFKATF------------------TITLVHPKGYTALSNMPVIKEE--PVDDGWKTTTF 213 (882)
T ss_pred EEEeccCccchhhcCCCCCcccccCce------------------EEEEEecCCceEeecCcccccc--cccCCeeEEEE
Confidence 567899999999999999999999999 9999999999999999999888 56677999999
Q ss_pred cCCCCCccceeeeeeecceeeccccCCCCeeEEEEEcCCchhhHHHHHHHHHHHHHHHHHHhCCCCCCCcccEEEcCCCC
Q psy13037 93 ATTVPMSTYLVCFIVCDFDHLPSQDAKQGFPIKVYAREGQLEHMEFAQKTAIAAINFYVEYFNISYPLPKLDLIAIPDFV 172 (1094)
Q Consensus 93 ~~t~pms~y~va~~vg~f~~~~~~~~~~~~~i~v~~~~~~~~~~~~~l~~~~~~l~~~e~~fg~~yP~~k~d~V~vp~~~ 172 (1094)
+.||+||+|++||+||+|+..+...+ .|+++++|++|+...+.+++++.+.++|++|+++||++||++|+|+|++|+|.
T Consensus 214 ~~Tp~MstYLvAf~V~~f~~~e~~~~-~~v~vrv~a~p~~~~~~~~al~~~~~~L~~~e~~f~i~yPLpK~D~iavPdf~ 292 (882)
T KOG1046|consen 214 EKTPKMSTYLVAFAVGDFVYVETITK-SGVPVRVYARPEKINQGQFALEVATKVLEFYEDYFGIPYPLPKLDLVAVPDFS 292 (882)
T ss_pred EecCCCchhhheeeeeccccceeecC-CCceEEEEeChHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCccccEEecCCcc
Confidence 99999999999999999999998876 78999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccceeeecceeeecCCCCchhhhhhhhhhHhHHHHHHhhcCccccCCCchhhHhHHHHHHHHHHHHhhcCcchh
Q psy13037 173 SGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMGWWNDLWLNEGFASYMQYKALAKVEPTWE 252 (1094)
Q Consensus 173 ~g~me~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~~~~~~ 252 (1094)
.|||||||||+|++..+|++|..++..++++++.+||||+|||||||+|||+||+|+|||||||+|++++.++..+|+|.
T Consensus 293 ~GAMENwGLvtyre~~lL~~~~~ss~~~k~~va~vIaHElAHQWFGNLVTm~wW~dLWLnEGfAt~~~~~~v~~~~p~~~ 372 (882)
T KOG1046|consen 293 AGAMENWGLVTYRETALLYDPQTSSSSNKQRVAEVIAHELAHQWFGNLVTMKWWNDLWLNEGFATYVEYLAVDHLFPEWD 372 (882)
T ss_pred ccchhcCcceeeeehhhccCCCcCcHHHHHHHHHHHHHHHHHHHhcCcccHhhhhhhhhcccHHHHHHHHhhccCCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccccCCCCCeeeccCCccccccccccchhchHHHHHHHHHHHhCHHHHHHHHHHHHHHhcCCCCC
Q psy13037 253 VDTMFLTDMLHSTLQLDQTLSSHPIVQTVSNPDQITEIFDVISYQKGSSVIRMLENMMGEESFAHGVTSYLNEFQFKNAE 332 (1094)
Q Consensus 253 ~~~~~~~~~~~~~~~~d~~~~~~pl~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~e~F~~~l~~yl~~~~~~~~~ 332 (1094)
+.++++...+..++..|+..++||+..++.++.++.+.|+.++|.||++|||||+..+|++.|++||+.||++|+|+|++
T Consensus 373 ~~~~~~~~~l~~~l~~D~l~~shpi~~~v~~~~ei~e~fd~i~Y~KGasvlRML~~~lGe~~F~~gi~~yL~~~~y~na~ 452 (882)
T KOG1046|consen 373 IWEQFLLENLERVLSLDALASSHPISVPVESPSEIDEIFDEISYQKGASVLRMLESLLGEEVFRKGLRSYLKKHQYSNAK 452 (882)
T ss_pred hHHHHHHHHHHHHhhhhcccccCCeeeecCCcchhhhhhhhhhhhHHHHHHHHHHHHHCHHHHHHHHHHHHHHhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHhhcCCCcceEEEEEeCCeEEEEEEeeccCCCCCCCCCCCCCCceeEEEEEEEECCCC
Q psy13037 333 TNDLWSHLQKFANNMSVTSVMDTYTRQMGFPIITVKKSGDQVTFTQQRYLSNPNASYNPDDSPFKYLWDVYITMFTSSDP 412 (1094)
Q Consensus 333 ~~df~~~l~~~~~~~~l~~~~~~W~~~~G~P~l~v~~~~~~~~i~Q~rf~~~~~~~~~~~~~~~~~~w~iPi~~~~~~~~ 412 (1094)
++|||++|+...+ .+++++|+.|+.|+|||+++|.+++++++++|+||...+. ..+.+++|+||++|.+.+.+
T Consensus 453 ~~DLw~~l~~~~~-~~v~~~M~~Wt~Q~G~Pvv~V~~~~~~~~l~Q~rf~~~~~------~~~~~~~w~iPl~~~~~~~~ 525 (882)
T KOG1046|consen 453 TEDLWDALEEGSG-LDVSELMDTWTKQMGYPVVTVERNGDSLTLTQERFLSDPD------PSEDNYLWWIPLTYTTSGSG 525 (882)
T ss_pred chhHHHHHhccCC-CCHHHHHhhhhcCCCCceEEEEecCCEEEEehhhhccCCC------ccccCcccceeEEEEcCCCC
Confidence 9999999997677 9999999999999999999999999999999999998764 12347899999999987665
Q ss_pred CcceeeeeecccccccccceeeeeeeccccCCCCCCCccccCCCCCCCCCCCcCCCCCCCccccceeEEEEeecCCCcce
Q psy13037 413 SHTLHTWLYRNMSEDCRTYQTILFEDCVRESGSTAPKSFKNDSTVSNPTQPWELNSRLETTVIPKMYDLYLNPYLGKKLF 492 (1094)
Q Consensus 413 ~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~RLP~~v~P~~Y~l~l~p~~~~~~f 492 (1094)
.. +..|++.+ +.. +.+ +.+.
T Consensus 526 ~~-~~~~~~~~-------------------~~~-----~~l----~~~~------------------------------- 545 (882)
T KOG1046|consen 526 SV-PKFWLSSK-------------------STT-----IKL----PESD------------------------------- 545 (882)
T ss_pred cc-ceeeecCC-------------------Ccc-----eec----CCCC-------------------------------
Confidence 44 56787654 222 222 1100
Q ss_pred eEEEEEEEEEeCcccEEEEEeccceeeeeecccCCCCCccccccceecccCceEEEEeccccCCceEEEEEEEEEeeCCC
Q psy13037 493 TGTVKINIEVTNATGYIYLHKSSLTIEETTVFKGEDITPIDLLSTFDYAKNEYWVITFKETIDPGSYVLKFKFKGNFSKK 572 (1094)
Q Consensus 493 ~G~v~I~~~v~~~t~~i~lh~~~l~I~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~l~~g~y~L~i~f~g~l~~~ 572 (1094)
-|+.+|. +.+
T Consensus 546 -~wi~~N~---~~~------------------------------------------------------------------ 555 (882)
T KOG1046|consen 546 -QWIKVNL---EQT------------------------------------------------------------------ 555 (882)
T ss_pred -eEEEEeC---Ccc------------------------------------------------------------------
Confidence 2566666 444
Q ss_pred CeeEEEEEEecCCceEEEEEecCCCCccceeeEEeeeeccCCccchhhhhhcCCCCceEecCCCCccccccccccceeec
Q psy13037 573 NEGFYESMYMNYKNHKRLIATSKFEPTYLWDVYITMFTSSDPSHTLHTWLYRNMSEDLIAIPDFVSGAMEHWGLVTFREA 652 (1094)
Q Consensus 573 ~~GfYrs~Y~~~~~~~~~~~~t~~~pt~~~~~~~~~f~~~~r~~~l~~~~~~~~k~D~ialpdf~~gaMEnwGLityre~ 652 (1094)
||||..|.. ++|..++..+.- + ..+++.+|.++++ |++++. +.|.+.|..+
T Consensus 556 --g~yRV~Yd~-~~w~~l~~~l~~-~--------~~~~~~~Ra~li~---------D~~~la--------~~~~~~~~~~ 606 (882)
T KOG1046|consen 556 --GYYRVNYDD-ENWALLIEQLKN-H--------ESLSVIDRAQLIN---------DAFALA--------RAGRLPYSIA 606 (882)
T ss_pred --eEEEEEeCH-HHHHHHHHHHhh-c--------CccCHhHHHHHHH---------HHHHHH--------hcCCCchHHH
Confidence 888866633 367666544433 3 5788899999999 999999 9999999999
Q ss_pred cccccCCCCchhhhhHHHHhhhhcccc-cccccccchhhHHHHHhcccchhhhhhhhhcccCchhHHHHHHHHHHHHhhh
Q psy13037 653 AVLFKKGSSSIVNKKRVAMTTSHELAH-MWFGDLVTMGWWNDLWLNEGFASYMQYKALAKVEPTWEVLYIRCLLKDKLSE 731 (1094)
Q Consensus 653 ~lL~d~~~ss~~~k~~va~viahElah-qWfGnlvt~~ww~~lwlnEGfa~y~~~~~~~~~~Pe~~~~f~~~~l~~~~~~ 731 (1094)
+.|..+ +.||..+ +|...+..+.++.. .+.-..+..+ ..|+..++.+.++.
T Consensus 607 l~l~~~--------------l~~e~~~~p~~~~~~~l~~~~~---~~~~~~~~~~-----------~~~~~~l~~~~~~~ 658 (882)
T KOG1046|consen 607 LNLISY--------------LKNETDYVPWSAAIRSLYKLHS---LEDTEIYSKF-----------KEFVKKLILPIFEK 658 (882)
T ss_pred HHHHHH--------------HhcccccchHHHHHHHHHHHhh---cccchHHHHH-----------HHHHHHHHHHHHHH
Confidence 999988 9999999 99999999998888 4443445555 68899999999999
Q ss_pred ccccccccchhhHhHHhhhhcccccCCChhhHHHHHHHHHHHhcCCCCCcchHhHHHhhhcccccchhHHHHHHHHHhhc
Q psy13037 732 ETWKVENKSYLEVNLKLVLNDLGCNFGAPSCLKKAADLLKNWFDSGVKPEADLRGLVYRYGMENVGEEEWKKMWAKFREE 811 (1094)
Q Consensus 732 ~~~~~~~~s~~~~~lr~~~~~~a~~~g~~~~~~~a~~~f~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~~~~~ 811 (1094)
++|.....+....+++..+...+|..+++.|++.|..+|.+|......+|+++|..+||.+++.|+++.|+.+|+.|..+
T Consensus 659 ~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~~a~~~f~~~~~~~~~ip~~lr~~vy~~~~~~g~~~~w~~~~~~y~~~ 738 (882)
T KOG1046|consen 659 LGWSDGADSSLDNMLRVSVLSFACRFGHEECLKKAVELFRQWLAGTNPIPPDLREVVYCTAVQFGTEEDWEQLLELYKKE 738 (882)
T ss_pred hcCCccccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhcCCCCChhhhhhhhhHHHHhcCHhHHHHHHHHHhcc
Confidence 99987433337788999999999999999999999999999988777899999999999999999999999999999999
Q ss_pred CCcccceeeeccccccccCceeeeeeecccCCccccceeeEEEEEeeccCCCCccEEEEeccccHHHHHHhhcCCccccc
Q psy13037 812 SNPQEQIKMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQDYFTVIVMVAGNPKGLPVAWDYVKKNWDYLVKRFGLNHRVFG 891 (1094)
Q Consensus 812 ~~~~~~~~~l~~l~~~~~~~~l~~~L~~~~~~~~~~~qd~~~~~~~~~~n~~g~~~~~~y~~~nw~~l~~~l~~~~~~~~ 891 (1094)
....++..++.+|+|+++++.+++++....+...++.||....+..+..|+.|...+|+|..+||..+.+++. +...++
T Consensus 739 ~~~~e~~~~l~al~~~~~~~~l~~~l~~~~~~~~v~~qd~~~~~~~~~~~~~g~~~a~~~~~~n~~~l~~~~~-~~~~~~ 817 (882)
T KOG1046|consen 739 TTAAEKRKLLNALSCSKDPWLLQRLLDLAFDAENVRDQDVLTLLQGISGNPRGVELAWKFLQDNWKELLNRYG-NNFELS 817 (882)
T ss_pred ccHHHHHHHHHHhccCccHHHHHHHHHHhcccccccchhHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcC-CcHHHH
Confidence 9889999999999999999999999876666455889998888777888888999999999999999999988 777889
Q ss_pred ccccccccccchhhhhhhccCccchhhhHHHHHHHHHcCCccHHHHHHHHHHHhh
Q psy13037 892 RIIPSVCGKFTTQERLDEVLDARDRSNLLDDAFNLAESQMIEYSTTFNLMKYMSK 946 (1094)
Q Consensus 892 ~ii~~~~~~~~t~~~~~~l~~f~~R~~lidDa~~la~~g~l~y~~~~~~~~yl~~ 946 (1094)
+++..+...+.+..+++++..|+....-... ..+....++ .+..++.|+++
T Consensus 818 ~li~~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~~~~~~le--~~~~ni~W~~~ 868 (882)
T KOG1046|consen 818 RLISFITEPFATEEKLDEVEKFFADIPKTGA--ERALQQALE--TVKANIQWVER 868 (882)
T ss_pred HHHHHHHhccCCHHHHHHHHHHHhcCCcchh--hHHHHHHHH--HHHhhhhHHHh
Confidence 9999999999999999999998876544322 556677777 88889999874
No 2
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=100.00 E-value=1e-83 Score=802.24 Aligned_cols=688 Identities=19% Similarity=0.243 Sum_probs=523.5
Q ss_pred CcceEEEEeeccceeEEEEeeceeecceeeeeeeeccCCCccceeeEEEEEecCCCcEEeecCCccccccCCCCCCeEEE
Q psy13037 11 TPKLVTLLVCTSAVLFVACVLSVTLLLLTRYISYHSSQPVRTHETWVRRSFDGGGGASGASEGPTKKSTDDQPGVNQTTV 90 (1094)
Q Consensus 11 ~~~~~t~~~p~~ar~~fPC~D~~~~~~~f~~~~~~~~~p~~~~~~~~~i~i~~p~~~~a~Sng~~~~~~~~~~~~~~~~~ 90 (1094)
.++++|.++|.+||.||||+|+|+.|++| +++|++|++|+|+|||++.+.. ..++.+++
T Consensus 117 ~~~~~Tq~ep~~Ar~~fPcfDeP~~KAtf------------------~ltit~p~~~~v~sNg~~~~~~---~~~~~~~~ 175 (831)
T TIGR02412 117 EVYLYTQFEPADARRVFAVFDQPDLKANF------------------KFSVKAPEDWTVISNSRETDVT---PEPADRRW 175 (831)
T ss_pred eEEEEECCCCcCceeeEecCCCCCCceeE------------------EEEEEECCCceEECCCcccccc---ccCCCeEE
Confidence 47889999999999999999999999999 9999999999999999987665 24567889
Q ss_pred EEcCCCCCccceeeeeeecceeeccccCCCCeeEEEEEcCCchhh--HHHHHHHHHHHHHHHHHHhCCCCCCCcccEEEc
Q psy13037 91 EFATTVPMSTYLVCFIVCDFDHLPSQDAKQGFPIKVYAREGQLEH--MEFAQKTAIAAINFYVEYFNISYPLPKLDLIAI 168 (1094)
Q Consensus 91 ~F~~t~pms~y~va~~vg~f~~~~~~~~~~~~~i~v~~~~~~~~~--~~~~l~~~~~~l~~~e~~fg~~yP~~k~d~V~v 168 (1094)
+|+.+||||+|++||+||+|+..+... +|+++++|++|+..+. .+++++.+.++|++|+++||+|||++|+|+|++
T Consensus 176 ~F~~t~pmstYL~a~~vG~f~~~~~~~--~gvpi~v~~~~~~~~~~~~~~al~~~~~~l~~~e~~fg~pYP~~k~d~V~v 253 (831)
T TIGR02412 176 EFPETPKLSTYLTAVAAGPYHSVQDES--RSYPLGIYARRSLAQYLDADAIFTITRQGLAFFHRKFGYPYPFKKYDQIFV 253 (831)
T ss_pred EecCCCCcccceEEEEEeceEEEeecC--CCEEEEEEECcchhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCEEEc
Confidence 999999999999999999999988654 7899999999987654 578999999999999999999999999999999
Q ss_pred CCCCCcccccccceeeecceeeecCCCCchhhhhhhhhhHhHHHHHHhhcCccccCCCchhhHhHHHHHHHHHHHHhhcC
Q psy13037 169 PDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMGWWNDLWLNEGFASYMQYKALAKVE 248 (1094)
Q Consensus 169 p~~~~g~me~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~~ 248 (1094)
|+|..|||||||+|+|++.. ++.+. .+...++.+..+||||+|||||||+|||+||+|+|||||||+|++++++++.+
T Consensus 254 P~f~~GaMEn~Glit~~e~~-l~~~~-~~~~~~~~~~~viaHElAHqWFGnlVT~~wW~dlWLnEGFAty~e~~~~~~~~ 331 (831)
T TIGR02412 254 PEFNAGAMENAGCVTFAENF-LHRAE-ATRAEKENRAGVILHEMAHMWFGDLVTMRWWNDLWLNESFAEYMGTLASAEAT 331 (831)
T ss_pred CCCCCCcccccceeeechhh-ccCCc-CCHHHHHHHHHHHHHHHHHHHhCCEeccccccchhHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999984 45443 33456677889999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhhhccccCCCCCeeeccCCccccccccccchhchHHHHHHHHHHHhCHHHHHHHHHHHHHHhcC
Q psy13037 249 PTWEVDTMFLTDMLHSTLQLDQTLSSHPIVQTVSNPDQITEIFDVISYQKGSSVIRMLENMMGEESFAHGVTSYLNEFQF 328 (1094)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~e~F~~~l~~yl~~~~~ 328 (1094)
|.+..+..|.......++..|+..++||+..++.++.++...|+.++|.||++||+||+..||++.|+++|+.|+++|++
T Consensus 332 ~~~~~~~~f~~~~~~~a~~~D~~~~t~Pi~~~~~~~~~~~~~fd~isY~KGa~vL~mL~~~lGee~F~~glr~Yl~~~~~ 411 (831)
T TIGR02412 332 EYTDAWTTFAAQGKQWAYEADQLPTTHPIVADVADLADALSNFDGITYAKGASVLKQLVAWVGEEAFFAGVNAYFKRHAF 411 (831)
T ss_pred CcchHHHHHHHHHHHHHHHHhcccCCCCCccCCCCHHHHHHhccCccchhHHHHHHHHHHHHCHHHHHHHHHHHHHHcCC
Confidence 98888888877777788889999999999998888888889999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCHHHHHHHhhcCCCcceEEEEEeC--CeEE-EEEEeeccCCCCCCCCCCCCCCceeEEEEE
Q psy13037 329 KNAETNDLWSHLQKFANNMSVTSVMDTYTRQMGFPIITVKKSG--DQVT-FTQQRYLSNPNASYNPDDSPFKYLWDVYIT 405 (1094)
Q Consensus 329 ~~~~~~df~~~l~~~~~~~~l~~~~~~W~~~~G~P~l~v~~~~--~~~~-i~Q~rf~~~~~~~~~~~~~~~~~~w~iPi~ 405 (1094)
++++++|||+++++++| .++++||++|++++|+|+|+|+++. +.+. +.|.+ .. . ...|+|||.
T Consensus 412 ~nat~~Dl~~~l~~~sg-~dl~~~~~~W~~~~G~P~l~v~~~~~~~~~~~~~~~~-----~~----~----~~~~~ip~~ 477 (831)
T TIGR02412 412 GNATLDDLIDSLAKASG-RDLSAWSDAWLETAGVNTLTPEITTDGGVVSALYPES-----SG----P----PRPHRIAIG 477 (831)
T ss_pred CCCCHHHHHHHHHHHhC-CCHHHHHHHHHcCCCCceEEEEEEECCCeEEEEEEec-----CC----C----CCCeeEEEe
Confidence 99999999999999999 9999999999999999999998753 4443 12221 10 0 134999999
Q ss_pred EEECCCCCccee----eeeecccccccccceeeeeeeccccCCCCCCCccccCCCCCCCCCCCcCCCCCCCccccceeEE
Q psy13037 406 MFTSSDPSHTLH----TWLYRNMSEDCRTYQTILFEDCVRESGSTAPKSFKNDSTVSNPTQPWELNSRLETTVIPKMYDL 481 (1094)
Q Consensus 406 ~~~~~~~~~~~~----~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~RLP~~v~P~~Y~l 481 (1094)
+.+..+...... .++... ... +.. ..+...|
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~-------------------~~~-----~~~---~~~~~~~------------------ 512 (831)
T TIGR02412 478 LYDLDRDDLRRTTLVPLTISGE-------------------RTA-----VPQ---LVGKRAP------------------ 512 (831)
T ss_pred eeecCCCcceeeeEEEEEEecC-------------------cee-----ehh---hcCCCCC------------------
Confidence 865433221111 111100 000 000 0000000
Q ss_pred EEeecCCCcceeEEEEEEEEEeCcccEEEEEeccceeeeeecccCCCCCccccccceecccCceEEEEeccccCCceEEE
Q psy13037 482 YLNPYLGKKLFTGTVKINIEVTNATGYIYLHKSSLTIEETTVFKGEDITPIDLLSTFDYAKNEYWVITFKETIDPGSYVL 561 (1094)
Q Consensus 482 ~l~p~~~~~~f~G~v~I~~~v~~~t~~i~lh~~~l~I~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~l~~g~y~L 561 (1094)
.||.+|.
T Consensus 513 ------------~~v~~N~------------------------------------------------------------- 519 (831)
T TIGR02412 513 ------------ALVLLND------------------------------------------------------------- 519 (831)
T ss_pred ------------CEEEEeC-------------------------------------------------------------
Confidence 2233332
Q ss_pred EEEEEEeeCCCCeeEEEEEEecCCceEEEEEecCCCCccceeeEEeeeeccCCccchhhhhhcCCCCceEecCCCCcccc
Q psy13037 562 KFKFKGNFSKKNEGFYESMYMNYKNHKRLIATSKFEPTYLWDVYITMFTSSDPSHTLHTWLYRNMSEDLIAIPDFVSGAM 641 (1094)
Q Consensus 562 ~i~f~g~l~~~~~GfYrs~Y~~~~~~~~~~~~t~~~pt~~~~~~~~~f~~~~r~~~l~~~~~~~~k~D~ialpdf~~gaM 641 (1094)
+..||||..|.. .+|..+...+. ...+..+|.++++ |+.++.
T Consensus 520 ----------~~~gyyrv~yd~-~~~~~l~~~l~-----------~~~~~~~R~~l~~---------d~~~~~------- 561 (831)
T TIGR02412 520 ----------DDLTYAKVRLDP-TSFDTVLAALS-----------KLPDPLSRAVVWA---------SLWDSV------- 561 (831)
T ss_pred ----------CCcEEEEEECCH-HHHHHHHHHhh-----------hCCChhhHHHHHH---------HHHHHH-------
Confidence 333999955522 24555443321 1124678899999 999999
Q ss_pred ccccccceeeccccc-cCCCCchhhhhHHHHhhhhcccc-cccccccchh-hHHHHHhcccchhhhhhhhhcccCchhHH
Q psy13037 642 EHWGLVTFREAAVLF-KKGSSSIVNKKRVAMTTSHELAH-MWFGDLVTMG-WWNDLWLNEGFASYMQYKALAKVEPTWEV 718 (1094)
Q Consensus 642 EnwGLityre~~lL~-d~~~ss~~~k~~va~viahElah-qWfGnlvt~~-ww~~lwlnEGfa~y~~~~~~~~~~Pe~~~ 718 (1094)
+.|.+.+++.+.|+ .+ +.+|..+ +|-..+..+. +....+..+ +.+..+ .
T Consensus 562 -~~g~~~~~~~l~l~~~~--------------l~~E~~~~v~~~~~~~l~~~~~~~~~~~--~~~~~~-----------~ 613 (831)
T TIGR02412 562 -RDGELSPDDYLSTVFAH--------------VPSETDYAVVQQVLSQLLRAVAAQYAPI--ADRPAL-----------L 613 (831)
T ss_pred -HcCCCCHHHHHHHHHHh--------------ccCCCchHHHHHHHHHHHHHHHHHhCCH--HHHHHH-----------H
Confidence 99999999988755 55 8999999 9998888887 666666554 344444 4
Q ss_pred HHHHHHHHHHhhhccccccccchhhHhHHhhhhcccccCCChhhHHHHHHHHHHHhcCCCCCcchHhHHHhhhcccccch
Q psy13037 719 LYIRCLLKDKLSEETWKVENKSYLEVNLKLVLNDLGCNFGAPSCLKKAADLLKNWFDSGVKPEADLRGLVYRYGMENVGE 798 (1094)
Q Consensus 719 ~f~~~~l~~~~~~~~~~~~~~s~~~~~lr~~~~~~a~~~g~~~~~~~a~~~f~~~~~~~~~~~~~l~~~v~~~~~~~~~~ 798 (1094)
.++..++.+... . .+++...+++ .+...+|..|+..+++.+.++|+.|+.+ ..+++++|..++|.+.+ ++.
T Consensus 614 ~~~~~~~~~~~~----~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~dlr~~v~~~~~~-~~~ 684 (831)
T TIGR02412 614 AVAALACRSLRR----A--MESGPDFQLR-WLRALALTATDPDSLRRLLSLLDGKIKG-LALDPDLRWRIIARLAA-LGF 684 (831)
T ss_pred HHHHHHHHHHHh----c--cCCCccHHHH-HHHHHHHhcCCHHHHHHHHHHHhCCCCC-cccCHhHHHHHHHHHHh-cCC
Confidence 455555544321 1 1222222332 2445789999999999999999876553 46899999999997766 567
Q ss_pred hHHHHHHHHHhhcCCcccceeeeccccccccCceeee-eeecccCCccccceeeEEEEEeeccCCCCccEEEEeccccHH
Q psy13037 799 EEWKKMWAKFREESNPQEQIKMLGGLSSVKEPKLLEK-FLEMAKDEKNIRSQDYFTVIVMVAGNPKGLPVAWDYVKKNWD 877 (1094)
Q Consensus 799 ~~~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~l~~-~L~~~~~~~~~~~qd~~~~~~~~~~n~~g~~~~~~y~~~nw~ 877 (1094)
.+|+.+++.|....+..++..++.+++|..+++++++ ++... .++.++.|+...++..+. ++.+....|.|.++||+
T Consensus 685 ~~~~~l~~~~~~~~~~~~~~~~l~al~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 762 (831)
T TIGR02412 685 IDADDIAAELERDNTASGEEHAAAARAARPDAAAKREAWQKLV-TTDALPNSKQRAIIEGFW-QPEQALLLAAYAERYFA 762 (831)
T ss_pred CCHHHHHHHHhcCCCHHHHHHHHHHhccCCCHHHHHHHHHHHh-CCCCCCHHHHHHHHhhcC-CCCcHHHHHHHHHHHHH
Confidence 8888899999888888888889999999999887763 43333 333367777665555554 45778888999999999
Q ss_pred HHHHhhcCCccccccccc-ccc-cccchhhhhhhccCccch-hhhHHHHHHHHHcCCcc
Q psy13037 878 YLVKRFGLNHRVFGRIIP-SVC-GKFTTQERLDEVLDARDR-SNLLDDAFNLAESQMIE 933 (1094)
Q Consensus 878 ~l~~~l~~~~~~~~~ii~-~~~-~~~~t~~~~~~l~~f~~R-~~lidDa~~la~~g~l~ 933 (1094)
.|.+.+......+.+.+. .+. ..+++.+.++++.+|++. .... .++..+..+.++
T Consensus 763 ~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~l~~~~d 820 (831)
T TIGR02412 763 NLADIWKRRGPAIAQAISRGLFPATAVNYDTLATADKWLRSQADAS-PGLRRTLLERRD 820 (831)
T ss_pred HHHHHHHhCCHHHHHHHHHhcCCcccCCHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHh
Confidence 999988652233333333 222 366777777777777742 1111 244444444444
No 3
>KOG1046|consensus
Probab=100.00 E-value=2.5e-76 Score=733.36 Aligned_cols=570 Identities=32% Similarity=0.546 Sum_probs=414.6
Q ss_pred CCCCCCCccccceeEEEEeecCCCcceeEEEEEEEEEeCcccEEEEEeccceeeeeecccCCCCCccccccc-eecccCc
Q psy13037 466 LNSRLETTVIPKMYDLYLNPYLGKKLFTGTVKINIEVTNATGYIYLHKSSLTIEETTVFKGEDITPIDLLST-FDYAKNE 544 (1094)
Q Consensus 466 ~~~RLP~~v~P~~Y~l~l~p~~~~~~f~G~v~I~~~v~~~t~~i~lh~~~l~I~~~~~~~~~~~~~~~~~~~-~~~~~~~ 544 (1094)
+.+|||++|+|+||+|+|+|+|....|.|.|.|.++|.++|+.|+||+.++.|.+..+.............. ......+
T Consensus 27 ~~~rLP~~v~P~~Y~l~l~~~l~~~~f~G~v~I~l~v~~~t~~i~Lh~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (882)
T KOG1046|consen 27 NEYRLPTNVVPLHYDLTLKPDLEEFTFTGSVKISLEVSEATRFIVLHAKDLKITSASLVSRPSSGSVQLEVSVEEKEQEE 106 (882)
T ss_pred ccccCCCCCCCceeEEEEecCCcCCcceeEEEEEEEEecccCEEEEEhhhccceeEEEEecCCCCcccccccccccccce
Confidence 579999999999999999999999999999999999999999999999999999887654211111110010 1111118
Q ss_pred eEEEEeccccCCc-eEEEEEEEEEeeCCCCeeEEEEEEecCCceEEEEEecCCCCccce---------------------
Q psy13037 545 YWVITFKETIDPG-SYVLKFKFKGNFSKKNEGFYESMYMNYKNHKRLIATSKFEPTYLW--------------------- 602 (1094)
Q Consensus 545 ~l~i~~~~~l~~g-~y~L~i~f~g~l~~~~~GfYrs~Y~~~~~~~~~~~~t~~~pt~~~--------------------- 602 (1094)
.+.+.++++|..| +|+|+|.|.|.|++++.|||||+|++.++.++++++|||||++++
T Consensus 107 ~l~~~~~~~l~~~~~y~L~i~f~g~l~~~~~G~y~s~y~~~~~~~~~~~~Tqfept~AR~~FPCfDeP~~KAtF~Itl~h 186 (882)
T KOG1046|consen 107 TLVFPLNETLLAGSSYTLTIEFTGKLNDSSEGFYRSSYTDSEGSEKSIAATQFEPTDARRAFPCFDEPAFKATFTITLVH 186 (882)
T ss_pred EEEEEcccccccCCeEEEEEEEeEeecCCcceeeeecccCCCCceEEEEEeccCccchhhcCCCCCcccccCceEEEEEe
Confidence 8999999999999 699999999999999999999999998777799999999997641
Q ss_pred ---------------------------------eeEEeeeeccCCc---------cchhhhh------------------
Q psy13037 603 ---------------------------------DVYITMFTSSDPS---------HTLHTWL------------------ 622 (1094)
Q Consensus 603 ---------------------------------~~~~~~f~~~~r~---------~~l~~~~------------------ 622 (1094)
.+|+.+|.+.+.. ..+++|+
T Consensus 187 p~~~~aLSNm~v~~~~~~~~~~~~~~F~~Tp~MstYLvAf~V~~f~~~e~~~~~~v~vrv~a~p~~~~~~~~al~~~~~~ 266 (882)
T KOG1046|consen 187 PKGYTALSNMPVIKEEPVDDGWKTTTFEKTPKMSTYLVAFAVGDFVYVETITKSGVPVRVYARPEKINQGQFALEVATKV 266 (882)
T ss_pred cCCceEeecCcccccccccCCeeEEEEEecCCCchhhheeeeeccccceeecCCCceEEEEeChHHhhHHHHHHHHHHHH
Confidence 1245556554421 1233332
Q ss_pred -----------hcCCCCceEecCCCCccccccccccceeeccccccCCCCchhhhhHHHHhhhhcccccccccccchhhH
Q psy13037 623 -----------YRNMSEDLIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMGWW 691 (1094)
Q Consensus 623 -----------~~~~k~D~ialpdf~~gaMEnwGLityre~~lL~d~~~ss~~~k~~va~viahElahqWfGnlvt~~ww 691 (1094)
||.+|+|+||||||++|||||||||||||+.+|+|+..++..+||+||.+||||+|||||||||||+||
T Consensus 267 L~~~e~~f~i~yPLpK~D~iavPdf~~GAMENwGLvtyre~~lL~~~~~ss~~~k~~va~vIaHElAHQWFGNLVTm~wW 346 (882)
T KOG1046|consen 267 LEFYEDYFGIPYPLPKLDLVAVPDFSAGAMENWGLVTYRETALLYDPQTSSSSNKQRVAEVIAHELAHQWFGNLVTMKWW 346 (882)
T ss_pred HHHHHHHhCCCCCCccccEEecCCccccchhcCcceeeeehhhccCCCcCcHHHHHHHHHHHHHHHHHHHhcCcccHhhh
Confidence 677899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccchhhhhhhhhcccCchhHH--HHHHHHHHHHhhhccccccccchhhHhHHhhhhcccccCCChhhHHHH--H
Q psy13037 692 NDLWLNEGFASYMQYKALAKVEPTWEV--LYIRCLLKDKLSEETWKVENKSYLEVNLKLVLNDLGCNFGAPSCLKKA--A 767 (1094)
Q Consensus 692 ~~lwlnEGfa~y~~~~~~~~~~Pe~~~--~f~~~~l~~~~~~~~~~~~~~s~~~~~lr~~~~~~a~~~g~~~~~~~a--~ 767 (1094)
++||||||||+|++|+++++++|+|.. +|+...+..++..++.. .+|....--.......-.+....|.++| .
T Consensus 347 ~dLWLnEGfAt~~~~~~v~~~~p~~~~~~~~~~~~l~~~l~~D~l~---~shpi~~~v~~~~ei~e~fd~i~Y~KGasvl 423 (882)
T KOG1046|consen 347 NDLWLNEGFATYVEYLAVDHLFPEWDIWEQFLLENLERVLSLDALA---SSHPISVPVESPSEIDEIFDEISYQKGASVL 423 (882)
T ss_pred hhhhhcccHHHHHHHHhhccCCcchhhHHHHHHHHHHHHhhhhccc---ccCCeeeecCCcchhhhhhhhhhhhHHHHHH
Confidence 999999999999999999999999974 68888888888766553 2331110000000001123333444443 3
Q ss_pred HHHHHHhcCCCCCcchHhHHHhhhcccccchhHHHHHHHHHhhcCCcccceeeeccccc---------------------
Q psy13037 768 DLLKNWFDSGVKPEADLRGLVYRYGMENVGEEEWKKMWAKFREESNPQEQIKMLGGLSS--------------------- 826 (1094)
Q Consensus 768 ~~f~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~--------------------- 826 (1094)
+|++.++++.. ....++..+..... +++.-+++|+.+..+. ......+|..++.
T Consensus 424 RML~~~lGe~~-F~~gi~~yL~~~~y---~na~~~DLw~~l~~~~-~~~v~~~M~~Wt~Q~G~Pvv~V~~~~~~~~l~Q~ 498 (882)
T KOG1046|consen 424 RMLESLLGEEV-FRKGLRSYLKKHQY---SNAKTEDLWDALEEGS-GLDVSELMDTWTKQMGYPVVTVERNGDSLTLTQE 498 (882)
T ss_pred HHHHHHHCHHH-HHHHHHHHHHHhcc---CCCCchhHHHHHhccC-CCCHHHHHhhhhcCCCCceEEEEecCCEEEEehh
Confidence 66666666410 01112211111111 1122223333333111 1111111211100
Q ss_pred ----------cccCceeeeeeecccCCc-------------cccceeeEEEEEeeccCCCCccEEEEeccccHHHHHHhh
Q psy13037 827 ----------VKEPKLLEKFLEMAKDEK-------------NIRSQDYFTVIVMVAGNPKGLPVAWDYVKKNWDYLVKRF 883 (1094)
Q Consensus 827 ----------~~~~~~l~~~L~~~~~~~-------------~~~~qd~~~~~~~~~~n~~g~~~~~~y~~~nw~~l~~~l 883 (1094)
....|.++ +.+...+. .+...... -+..++.+..| +++++|+.++|..|.+++
T Consensus 499 rf~~~~~~~~~~~~w~iP--l~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~wi~~N~~~~g-~yRV~Yd~~~w~~l~~~l 574 (882)
T KOG1046|consen 499 RFLSDPDPSEDNYLWWIP--LTYTTSGSGSVPKFWLSSKSTTIKLPESD-QWIKVNLEQTG-YYRVNYDDENWALLIEQL 574 (882)
T ss_pred hhccCCCccccCccccee--EEEEcCCCCccceeeecCCCcceecCCCC-eEEEEeCCcce-EEEEEeCHHHHHHHHHHH
Confidence 00011111 00000000 00000000 01122333344 456799999999999998
Q ss_pred cCCcccccccccccccccchhhhhhhccCccchhhhHHHHHHHHHcCCccHHHHHHHHHHHhhCCCcccHHHHHHhHHHH
Q psy13037 884 GLNHRVFGRIIPSVCGKFTTQERLDEVLDARDRSNLLDDAFNLAESQMIEYSTTFNLMKYMSKEDHFVPWTVVYNKLSRL 963 (1094)
Q Consensus 884 ~~~~~~~~~ii~~~~~~~~t~~~~~~l~~f~~R~~lidDa~~la~~g~l~y~~~~~~~~yl~~E~~y~pW~~a~~~l~~l 963 (1094)
.. +..+ +..||++|++|+|.+|.+|.++++.+++++.|+.+|++|.||.+++.+|..+
T Consensus 575 ~~-~~~~---------------------~~~~Ra~li~D~~~la~~~~~~~~~~l~l~~~l~~e~~~~p~~~~~~~l~~~ 632 (882)
T KOG1046|consen 575 KN-HESL---------------------SVIDRAQLINDAFALARAGRLPYSIALNLISYLKNETDYVPWSAAIRSLYKL 632 (882)
T ss_pred hh-cCcc---------------------CHhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 65 3322 2359999999999999999999999999999999999999999999998888
Q ss_pred HHHhccccCcccccccccccccccccchhhHHHHHHHHHHHhhhccccccCCccHHHHHHHHHHHHHhhhcCChhHHHHH
Q psy13037 964 DDKLYSTEGHEDFKLSRLDDKLYSTEGHEDFKLYIRCLLKDKLSEETWKVENKSYLEVNLKLVLNDLGCNFGAPSCLKKA 1043 (1094)
Q Consensus 964 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~lr~~i~~~aC~~g~~~c~~~A 1043 (1094)
.. +. .++.+..++.|+++++.|++++++|.....+.....+|..++.+||..|+++|+++|
T Consensus 633 ~~-~~------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~~a 693 (882)
T KOG1046|consen 633 HS-LE------------------DTEIYSKFKEFVKKLILPIFEKLGWSDGADSSLDNMLRVSVLSFACRFGHEECLKKA 693 (882)
T ss_pred hh-cc------------------cchHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 66 22 256789999999999999999999986333337888999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCChhHHhhHhhhcccccchh--HHHHHHHhhcccc
Q psy13037 1044 ADLLKNWFDSGVKPEADLRGLVYRYVQALPRRGNE--LQKKENRLRKENT 1091 (1094)
Q Consensus 1044 ~~~F~~~~~~~~~i~~dlr~~Vyc~~~~~~~~~~~--~~~~~~~~~~~~~ 1091 (1094)
..+|.+|+.+...+|+|+|.+|||++++. |++ |++++++|++++.
T Consensus 694 ~~~f~~~~~~~~~ip~~lr~~vy~~~~~~---g~~~~w~~~~~~y~~~~~ 740 (882)
T KOG1046|consen 694 VELFRQWLAGTNPIPPDLREVVYCTAVQF---GTEEDWEQLLELYKKETT 740 (882)
T ss_pred HHHHHHHHhcCCCCChhhhhhhhhHHHHh---cCHhHHHHHHHHHhcccc
Confidence 99999999887789999999999999998 444 9999999999875
No 4
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-65 Score=638.36 Aligned_cols=377 Identities=32% Similarity=0.568 Sum_probs=349.5
Q ss_pred cccccCCcceEEEEeeccceeEEEEeeceeecceeeeeeeeccCCCccceeeEEEEEecCCCcEEeecCCccccccCCCC
Q psy13037 5 SLKSQRTPKLVTLLVCTSAVLFVACVLSVTLLLLTRYISYHSSQPVRTHETWVRRSFDGGGGASGASEGPTKKSTDDQPG 84 (1094)
Q Consensus 5 ~~~~~~~~~~~t~~~p~~ar~~fPC~D~~~~~~~f~~~~~~~~~p~~~~~~~~~i~i~~p~~~~a~Sng~~~~~~~~~~~ 84 (1094)
.++++..|.+.|.+|+.+||.||||+|.|+.|++| +++|+.+++++++|||+.+... ...
T Consensus 127 ~~~~~~~~~~~TQ~Ea~~aR~~fpc~D~P~~katf------------------~~~i~~~k~~~~iSN~~~~~~~--~~~ 186 (859)
T COG0308 127 RSGYGGKPYLITQCEAEGARRIFPCIDEPDVKATF------------------TLTIRADKGPKLISNGNLIDGG--TLV 186 (859)
T ss_pred ecCCCCCeeEEeecccCCCceeeecCCCCCCccee------------------EEEEEecCcceeeecCCccccc--ccc
Confidence 45566688999999999999999999999999999 9999999999999999999887 566
Q ss_pred CCeEEEEEcCCCCCccceeeeeeecceeeccccCC--CCeeEEEEEcCCchhhHHHHHHHHHHHHHHHHHHhCCCCCCCc
Q psy13037 85 VNQTTVEFATTVPMSTYLVCFIVCDFDHLPSQDAK--QGFPIKVYAREGQLEHMEFAQKTAIAAINFYVEYFNISYPLPK 162 (1094)
Q Consensus 85 ~~~~~~~F~~t~pms~y~va~~vg~f~~~~~~~~~--~~~~i~v~~~~~~~~~~~~~l~~~~~~l~~~e~~fg~~yP~~k 162 (1094)
+++++++|..++|||+|++|+++|+|+..+..... .++++++|++++....++++++.+.+++++|+++||++||+++
T Consensus 187 ~g~~~~~f~~~~~mptYL~al~~G~~~~~~~~~~~~~~~v~l~iy~~~g~~~~a~~~~~~~~~~~~~~e~~fg~~y~l~~ 266 (859)
T COG0308 187 DGRKIVKFEDTPPMPTYLFALVAGDLEVFRDKFDTRSRDVPLEIYVPPGVLDRAKYALDETKRSIEFYEEYFGLPYALPI 266 (859)
T ss_pred CCcEEEEEcCCCCcchHhhheeeecceeeeeeeccCCCCeeEEEEecCcchhhhhhhHHHHHHHhhhHHHhcCCCCCCcc
Confidence 77999999999999999999999999888876521 2799999999998899999999999999999999999999999
Q ss_pred ccEEEcCCCCCcccccccceeeecceeeecCCCCchhhhhhhhhhHhHHHHHHhhcCccccCCCchhhHhHHHHHHHHHH
Q psy13037 163 LDLIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMGWWNDLWLNEGFASYMQYK 242 (1094)
Q Consensus 163 ~d~V~vp~~~~g~me~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfA~y~~~~ 242 (1094)
++|++|+|+.|||||||+++|++..++.+++..+....++++.+||||+|||||||+||++||+++|||||||+|+++.
T Consensus 267 -~~V~v~~f~~GaMEN~Gl~tf~~~~ll~~~~~at~~~~~~~~~viaHElaHqWfGnlVT~~~W~~lWLnEgfat~~e~~ 345 (859)
T COG0308 267 -DIVAVPDFSAGAMENWGLVTFREKYLLADPETATDSDYENVEEVIAHELAHQWFGNLVTMKWWDDLWLNEGFATFREVL 345 (859)
T ss_pred -cEEeccCCCCccccccceeEEeeeEEeeCcccchhHHHHHHHHHHHHHHhhhcccceeeccCHHHHHHhhhhHHHHHHH
Confidence 9999999999999999999999999999988888888899999999999999999999999999999999999999999
Q ss_pred HHhhcCc-chhHHHHHHHHHHHHhhhccccCCCCCeeeccCCccccccccccchhchHHHHHHHHHHHhCHHHHHHHHHH
Q psy13037 243 ALAKVEP-TWEVDTMFLTDMLHSTLQLDQTLSSHPIVQTVSNPDQITEIFDVISYQKGSSVIRMLENMMGEESFAHGVTS 321 (1094)
Q Consensus 243 ~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~pl~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~e~F~~~l~~ 321 (1094)
+.+.++| .|..+..+.......++..|+...+||+.....++.++++.||.++|.||++|+|||+..+|++.|+++|+.
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~hPi~~~~~~~~ei~~~fD~i~Y~KGs~vlrml~~~lG~e~F~kgl~~ 425 (859)
T COG0308 346 WSEDLGGRAWKRWEDFRTLRTSIALAEDSLPSSHPIRVDVYDPKEINDFFDAIVYEKGASVLRMLETLLGEEAFRKGLSL 425 (859)
T ss_pred HHHHhcchHHHHHHHHHHHhhhHHHhhccccccCCcccCCCCccchhhhcchhhcchhHHHHHHHHHHHCHHHHHHHHHH
Confidence 9999999 888777776655555899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHhhcCCCcceEEEEEeCC-eEEEEEEeeccCCCCCCCCCCCCCCcee
Q psy13037 322 YLNEFQFKNAETNDLWSHLQKFANNMSVTSVMDTYTRQMGFPIITVKKSGD-QVTFTQQRYLSNPNASYNPDDSPFKYLW 400 (1094)
Q Consensus 322 yl~~~~~~~~~~~df~~~l~~~~~~~~l~~~~~~W~~~~G~P~l~v~~~~~-~~~i~Q~rf~~~~~~~~~~~~~~~~~~w 400 (1094)
|+++|++++++++|||+++++++| .|+..+|++|+.|+|+|++.|+..++ .++++|.||...+ . +.+..|
T Consensus 426 yf~~h~~~~~~~~Dl~~a~~~~sg-~dl~~~~~~w~~q~G~P~l~v~~~~~~~~~l~~~q~~~~~-~-------~~~~~~ 496 (859)
T COG0308 426 YFKRHAGGNATTMDLWKALEDASG-KDLSAFFESWLSQAGYPVLTVSVRYDDFFKLTQKQFTPPG-Q-------EEKRPW 496 (859)
T ss_pred HHHhcCCCCCCHHHHHHHHHHHhC-CcHHHHHHHHHhCCCCCceeeeeeccccEEEEEEEeccCC-C-------ccCcee
Confidence 999999999999999999999999 99999999999999999999998887 7899999998654 1 124689
Q ss_pred EEEEEEEECCC
Q psy13037 401 DVYITMFTSSD 411 (1094)
Q Consensus 401 ~iPi~~~~~~~ 411 (1094)
+||+.+.....
T Consensus 497 ~iPl~~~~~~~ 507 (859)
T COG0308 497 PIPLAIKLLDG 507 (859)
T ss_pred eeccEEEecCC
Confidence 99999887644
No 5
>PRK14015 pepN aminopeptidase N; Provisional
Probab=100.00 E-value=8.4e-64 Score=614.61 Aligned_cols=362 Identities=20% Similarity=0.311 Sum_probs=308.9
Q ss_pred ceEEEEeeccceeEEEEeeceeecceeeeeeeeccCCCccceeeEEEEEecCC-Cc-EEeecCCccccccCCCCCCeEEE
Q psy13037 13 KLVTLLVCTSAVLFVACVLSVTLLLLTRYISYHSSQPVRTHETWVRRSFDGGG-GA-SGASEGPTKKSTDDQPGVNQTTV 90 (1094)
Q Consensus 13 ~~~t~~~p~~ar~~fPC~D~~~~~~~f~~~~~~~~~p~~~~~~~~~i~i~~p~-~~-~a~Sng~~~~~~~~~~~~~~~~~ 90 (1094)
.++|.+||++||+||||+|.|+.|++| +++|++|+ .| +++|||+++++. ...+|++++
T Consensus 120 ~~~TQ~Ep~gAR~~fPc~D~P~~KAtf------------------~itI~~p~~~~~~~lSNG~l~~~~--~~~~g~~~~ 179 (875)
T PRK14015 120 MFCTQCEAEGFRRITYFLDRPDVLARY------------------TVRIEADKAKYPVLLSNGNLVESG--ELPDGRHWA 179 (875)
T ss_pred EEEEeccccCcCCcccCCCCCCCCeeE------------------EEEEEEccccCeEEecCCccccce--eccCCeEEE
Confidence 679999999999999999999999999 99999999 48 689999998876 456889999
Q ss_pred EEcCCCCCccceeeeeeecceeeccc---cCCCCeeEEEEEcCCchhhHHHHHHHHHHHHHHHHHHhCCCCCCCcccEEE
Q psy13037 91 EFATTVPMSTYLVCFIVCDFDHLPSQ---DAKQGFPIKVYAREGQLEHMEFAQKTAIAAINFYVEYFNISYPLPKLDLIA 167 (1094)
Q Consensus 91 ~F~~t~pms~y~va~~vg~f~~~~~~---~~~~~~~i~v~~~~~~~~~~~~~l~~~~~~l~~~e~~fg~~yP~~k~d~V~ 167 (1094)
+|+.++|||+|++||+||+|+.++.. ..++++++++|++|+..+.++++++.++++|++||++||.|||++|+++|+
T Consensus 180 ~w~~~~PmpsYL~Al~aGdf~~~~d~~~~~~g~~vpl~iy~~p~~~~~~~~al~~~~~~L~~~E~~FG~pYP~~k~diVa 259 (875)
T PRK14015 180 TWEDPFPKPSYLFALVAGDLDVLEDTFTTRSGREVALEIYVEPGNLDKCDHAMDSLKKSMKWDEERFGLEYDLDIFMIVA 259 (875)
T ss_pred EEEeCCCcccceEEEEEeCCEEEEEEeeccCCCeEEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhCCCCChhhhCEEe
Confidence 99999999999999999999998743 222469999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccccccceeeecceeeecCCCCchhhhhhhhhhHhHHHHHHhhcCccccCCCchhhHhHHHHHHHHHHHHhhc
Q psy13037 168 IPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMGWWNDLWLNEGFASYMQYKALAKV 247 (1094)
Q Consensus 168 vp~~~~g~me~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~ 247 (1094)
+|+|..|||||||+++|++..++.+++..+..++..+..+||||+|||||||+||++||+|+|||||||+|++..+....
T Consensus 260 vp~f~~GaMEN~Gl~~f~~~~lL~~~~~~t~~~~~~i~~vIaHElaHqWFGNlVT~~~W~dLWLnEGFAty~e~~~~~~~ 339 (875)
T PRK14015 260 VDDFNMGAMENKGLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSADL 339 (875)
T ss_pred CCCCCCcccccccccccccceEecCcccCCHHHHHHHHHHHHHHHHHHHHhCcceecchhhhhhhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999998876777777889999999999999999999999999999999999998887665
Q ss_pred Ccc-h-hHHHHHHHHHHHHhhhccccCCCCCeeeccCCccccccccccchhchHHHHHHHHHHHhCHHHHHHHHHHHHHH
Q psy13037 248 EPT-W-EVDTMFLTDMLHSTLQLDQTLSSHPIVQTVSNPDQITEIFDVISYQKGSSVIRMLENMMGEESFAHGVTSYLNE 325 (1094)
Q Consensus 248 ~~~-~-~~~~~~~~~~~~~~~~~d~~~~~~pl~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~e~F~~~l~~yl~~ 325 (1094)
.+. . .+...... ....+..|.....+|+.. .++.++...|+.++|.||++|||||+..||++.|+++|+.|+++
T Consensus 340 ~~~~~~~~~~~~~l--~~~~~~~D~~~~a~pi~p--~~~~~i~~~f~~~~Y~KGA~vLrMLr~~lGde~F~~gLr~Yl~~ 415 (875)
T PRK14015 340 GSRAVKRIEDVRVL--RAAQFAEDAGPMAHPVRP--DSYIEINNFYTATVYEKGAEVIRMLHTLLGEEGFRKGMDLYFER 415 (875)
T ss_pred hhHHHHHHHHHHHH--hhhcccccccccCCCCCC--cchhhHHhcccchhhhHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 532 1 11111111 122455666666777753 24456778899999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHhcCCCCHHHHHHHhhcCCCcceEEEEEeC----Ce--EEEEEEeeccCCCCCCCCCCCCCCce
Q psy13037 326 FQFKNAETNDLWSHLQKFANNMSVTSVMDTYTRQMGFPIITVKKSG----DQ--VTFTQQRYLSNPNASYNPDDSPFKYL 399 (1094)
Q Consensus 326 ~~~~~~~~~df~~~l~~~~~~~~l~~~~~~W~~~~G~P~l~v~~~~----~~--~~i~Q~rf~~~~~~~~~~~~~~~~~~ 399 (1094)
|++++++++||++++++++| .|+.+|+ +|++|+|+|+++|++++ +. ++++|... .. . ..+....
T Consensus 416 ~~~~~at~~Df~~ale~asg-~DL~~f~-~W~~q~G~P~l~v~~~~d~~~~~~~ltl~Q~~~--~~-~-----~~~~~~~ 485 (875)
T PRK14015 416 HDGQAVTCEDFVAAMEDASG-RDLSQFR-RWYSQAGTPRVTVSDEYDAAAGTYTLTLSQSTP--PT-P-----GQPEKQP 485 (875)
T ss_pred hCCCCCCHHHHHHHHHHHhC-CCHHHHH-HHHcCCCCCeEEEEEEEcCCCCEEEEEEEEeCC--CC-C-----CCCCCce
Confidence 99999999999999999999 9999986 89999999999999864 23 55556532 11 1 1122467
Q ss_pred eEEEEEEEE
Q psy13037 400 WDVYITMFT 408 (1094)
Q Consensus 400 w~iPi~~~~ 408 (1094)
|+|||.+..
T Consensus 486 ~~iPl~i~l 494 (875)
T PRK14015 486 LHIPVAIGL 494 (875)
T ss_pred EEEEEEEEE
Confidence 999999964
No 6
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=100.00 E-value=5.1e-64 Score=614.38 Aligned_cols=364 Identities=21% Similarity=0.299 Sum_probs=311.1
Q ss_pred cceEEEEeeccceeEEEEeeceeecceeeeeeeeccCCCccceeeEEEEEecCCC-c-EEeecCCccccccCCCCCCeEE
Q psy13037 12 PKLVTLLVCTSAVLFVACVLSVTLLLLTRYISYHSSQPVRTHETWVRRSFDGGGG-A-SGASEGPTKKSTDDQPGVNQTT 89 (1094)
Q Consensus 12 ~~~~t~~~p~~ar~~fPC~D~~~~~~~f~~~~~~~~~p~~~~~~~~~i~i~~p~~-~-~a~Sng~~~~~~~~~~~~~~~~ 89 (1094)
..+.|.+||++||++|||+|.|+.|++| +++|++|++ | +++|||+++... ...+|+++
T Consensus 106 ~~~~TQ~Ep~gaR~ifpc~DeP~~kAtf------------------~vtI~~p~~~y~v~lSNg~~~~~~--~~~~g~~~ 165 (863)
T TIGR02414 106 GNFCTQCEAEGFRRITYFPDRPDVMSRY------------------TVTITADKKKYPVLLSNGNKIASG--ELPDGRHW 165 (863)
T ss_pred CeEEEEecCCCCCcCCCCCCCCCCceEE------------------EEEEEECCCcceEEEeCCccccce--ecCCCeEE
Confidence 3578999999999999999999999999 999999986 6 568999988765 35688999
Q ss_pred EEEcCCCCCccceeeeeeecceeecccc---CCCCeeEEEEEcCCchhhHHHHHHHHHHHHHHHHHHhCCCCCCCcccEE
Q psy13037 90 VEFATTVPMSTYLVCFIVCDFDHLPSQD---AKQGFPIKVYAREGQLEHMEFAQKTAIAAINFYVEYFNISYPLPKLDLI 166 (1094)
Q Consensus 90 ~~F~~t~pms~y~va~~vg~f~~~~~~~---~~~~~~i~v~~~~~~~~~~~~~l~~~~~~l~~~e~~fg~~yP~~k~d~V 166 (1094)
++|+.++|||+|++||+||+|++++... .+.++++++|++|+..++++++++.++++|++||++||++||++|+++|
T Consensus 166 ~~f~~t~pmptYLfA~vaGdf~~~~~~~~t~sg~~v~l~iy~~p~~~~~~~~al~~~~~~L~~~E~~fG~pYPl~k~diV 245 (863)
T TIGR02414 166 AEWEDPFPKPSYLFALVAGDLDVLEDTFTTKSGREVALRVYVEEGNKDKCDHAMESLKKAMKWDEEVFGLEYDLDIFMIV 245 (863)
T ss_pred EEEeCCCCcChhHheEEEeCCEEEEEEeeccCCCceEEEEEEccCcHHHHHHHHHHHHHHHHHHHHHhCCCCChhhccEE
Confidence 9999999999999999999999987532 2357899999999999999999999999999999999999999999999
Q ss_pred EcCCCCCcccccccceeeecceeeecCCCCchhhhhhhhhhHhHHHHHHhhcCccccCCCchhhHhHHHHHHHHHHHHhh
Q psy13037 167 AIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMGWWNDLWLNEGFASYMQYKALAK 246 (1094)
Q Consensus 167 ~vp~~~~g~me~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~ 246 (1094)
++|+|..|||||||+++|++..++.++...+..++..+..+||||+|||||||+||++||+++||+||||+|++..+...
T Consensus 246 avpdf~~GaMEN~GLi~f~e~~lL~~~~~~td~~~~~i~~VIaHElaHqWfGNlVT~~~W~~LWLnEGfAty~e~~~~~~ 325 (863)
T TIGR02414 246 AVDDFNMGAMENKGLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSAD 325 (863)
T ss_pred ecCCCCCccccccceeccccceEEeCCCCCCHHHHHHHHHHHHHHHHHHHhcceeeecchhhhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999987777777888999999999999999999999999999999999999877776
Q ss_pred cCcch--hHHHHHHHHHHHHhhhccccCCCCCeeeccCCccccccccccchhchHHHHHHHHHHHhCHHHHHHHHHHHHH
Q psy13037 247 VEPTW--EVDTMFLTDMLHSTLQLDQTLSSHPIVQTVSNPDQITEIFDVISYQKGSSVIRMLENMMGEESFAHGVTSYLN 324 (1094)
Q Consensus 247 ~~~~~--~~~~~~~~~~~~~~~~~d~~~~~~pl~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~e~F~~~l~~yl~ 324 (1094)
..+.. .+...... ....+..|+....||+.. ..+.+++..|+.++|.||++|+|||+..||++.|+++|+.|++
T Consensus 326 ~~~~~~~~~~~~~~l--r~~~f~~D~~p~~~Pi~~--~~~~~i~~~y~~i~Y~KGA~vLrML~~~LGee~F~~gLr~Yl~ 401 (863)
T TIGR02414 326 MTSRAVKRIEDVRLL--RAHQFPEDAGPMAHPVRP--ESYVEINNFYTATVYEKGAEVIRMLHTLLGEEGFRKGMDLYFS 401 (863)
T ss_pred hhhHHHHHHHHHHHH--HhhhhcccccccCCCCCC--cchhhHHhccchHHhHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 55432 11111111 123456677777888864 3456777889999999999999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHhhcCCCcceEEEEEeC----C--eEEEEEEeeccCCCCCCCCCCCCCCc
Q psy13037 325 EFQFKNAETNDLWSHLQKFANNMSVTSVMDTYTRQMGFPIITVKKSG----D--QVTFTQQRYLSNPNASYNPDDSPFKY 398 (1094)
Q Consensus 325 ~~~~~~~~~~df~~~l~~~~~~~~l~~~~~~W~~~~G~P~l~v~~~~----~--~~~i~Q~rf~~~~~~~~~~~~~~~~~ 398 (1094)
+|++++++++||++++++++| .|+.+|+ +|++|+|+|+|+|++++ + +++++|.+. .... .+...
T Consensus 402 r~~~~~at~~Df~~ale~asg-~dL~~f~-~W~~q~G~P~v~v~~~yd~~~~~~~lt~~Q~~~--~~~~------~~~~~ 471 (863)
T TIGR02414 402 RHDGQAVTCEDFVAAMEDASG-RDLNQFR-RWYSQAGTPVLEVKENYDAAKKTYTLTVRQSTP--PTPG------QTEKK 471 (863)
T ss_pred HhCCCCCCHHHHHHHHHHHhC-CCHHHHH-HHHcCCCCceeEEEEEEcCCCCEEEEEEEEeCC--CCCC------CCcCC
Confidence 999999999999999999999 9999985 89999999999999864 2 355556542 1111 11235
Q ss_pred eeEEEEEEEEC
Q psy13037 399 LWDVYITMFTS 409 (1094)
Q Consensus 399 ~w~iPi~~~~~ 409 (1094)
.|+|||.+..-
T Consensus 472 ~~~iPl~i~l~ 482 (863)
T TIGR02414 472 PLHIPIAVGLL 482 (863)
T ss_pred ceEEEEEEEEE
Confidence 69999998653
No 7
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=100.00 E-value=2.8e-58 Score=550.79 Aligned_cols=327 Identities=21% Similarity=0.357 Sum_probs=269.5
Q ss_pred CccccccCCcceEEEEeeccceeEEEEeeceeecceeeeeeeeccCCCccceeeEEEEEecCCCcEEeecCCccccccCC
Q psy13037 3 HDSLKSQRTPKLVTLLVCTSAVLFVACVLSVTLLLLTRYISYHSSQPVRTHETWVRRSFDGGGGASGASEGPTKKSTDDQ 82 (1094)
Q Consensus 3 ~~~~~~~~~~~~~t~~~p~~ar~~fPC~D~~~~~~~f~~~~~~~~~p~~~~~~~~~i~i~~p~~~~a~Sng~~~~~~~~~ 82 (1094)
++++.++++|+++|.++|+.||.||||+|+|+.|++| +++|++| ++|++||..+...
T Consensus 115 ~~~t~g~~~py~~Tq~qp~~AR~~fPC~D~P~~Katf------------------~~~I~~P--~~av~sg~~~~~~--- 171 (601)
T TIGR02411 115 PEQTSGKKHPYLFSQCQAIHARSVIPCQDTPSVKSTY------------------TAEVESP--LPVLMSGIPDGET--- 171 (601)
T ss_pred ccccCCCCCCEEEECCcccchheeeeecCCcccceEE------------------EEEEeeC--cceeccCCccccc---
Confidence 4556677889999999999999999999999999999 9999999 8999777665443
Q ss_pred CCCCeEEEEEcCCCCCccceeeeeeecceeeccccCCCCeeEEEEEcCCchhhHHHHHH-HHHHHHHHHHHHhCCCCCCC
Q psy13037 83 PGVNQTTVEFATTVPMSTYLVCFIVCDFDHLPSQDAKQGFPIKVYAREGQLEHMEFAQK-TAIAAINFYVEYFNISYPLP 161 (1094)
Q Consensus 83 ~~~~~~~~~F~~t~pms~y~va~~vg~f~~~~~~~~~~~~~i~v~~~~~~~~~~~~~l~-~~~~~l~~~e~~fg~~yP~~ 161 (1094)
.++..+++|+.++|||+|++||+||+|+..+ .|..+++|++|+..+.+++.+. .+.++++++|+++| |||++
T Consensus 172 -~~~~~~~~F~~t~pmptYLia~avG~~~~~~-----~g~~~~v~~~p~~~~~~~~~~~~~~~~~l~~~e~~~~-pYp~~ 244 (601)
T TIGR02411 172 -SNDPGKYLFKQKVPIPAYLIALASGDLASAP-----IGPRSSVYSEPEQLEKCQYEFEHDTENFIKTAEDLIF-PYEWG 244 (601)
T ss_pred -cCCCceEEEEeCCCcchhhheeeeccceecc-----cCCceEEEccchhHHHHHHHHHHhHHHHHHHHHHhCC-CCcCc
Confidence 1345678999999999999999999998754 3667999999999888888888 89999999999877 99999
Q ss_pred cccEEEc-CCCCCcccccccceeeecceeeecCCCCchhhhhhhhhhHhHHHHHHhhcCccccCCCchhhHhHHHHHHHH
Q psy13037 162 KLDLIAI-PDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMGWWNDLWLNEGFASYMQ 240 (1094)
Q Consensus 162 k~d~V~v-p~~~~g~me~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfA~y~~ 240 (1094)
|+|+|++ |+|++|||||||+ +|.+..++... + ....+||||+|||||||+||++||+|+|||||||+|++
T Consensus 245 k~d~vvlpp~f~~GgMEN~~l-tf~~~~ll~~d-------~-s~~~viaHElAHqWfGNlVT~~~W~d~WLnEGfaty~e 315 (601)
T TIGR02411 245 QYDLLVLPPSFPYGGMENPNL-TFATPTLIAGD-------R-SNVDVIAHELAHSWSGNLVTNCSWEHFWLNEGWTVYLE 315 (601)
T ss_pred cceEEEecCcccccccccccc-eeeccccccCC-------h-hhhhhHHHHHHhhccCceeecCCchHHHHHhhHHHHHH
Confidence 9999987 6899999999994 67776666532 1 23469999999999999999999999999999999999
Q ss_pred HHHHhhcCcchhH--HHHHHHHHHHHhhhccccCCCCCeeeccCCcc--ccccccccchhchHHHHHHHHHHHhC-HHHH
Q psy13037 241 YKALAKVEPTWEV--DTMFLTDMLHSTLQLDQTLSSHPIVQTVSNPD--QITEIFDVISYQKGSSVIRMLENMMG-EESF 315 (1094)
Q Consensus 241 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~~~~~pl~~~~~~~~--~~~~~f~~i~Y~Kg~~vl~mL~~~lG-~e~F 315 (1094)
.+++++++|++.. ........++..+.. ....+|+...+.+.. ++...|+.+.|.||+++|+||+..|| ++.|
T Consensus 316 ~~~~~~~~~e~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~dp~~~f~~i~Y~KGa~~L~mL~~~lG~~~~F 393 (601)
T TIGR02411 316 RRIVGRLYGEKTRHFSALIGWGELQESVKT--LGEDPEYTKLVVDLKDNDPDDAFSSVPYEKGFNFLFYLEQLLGGPAVF 393 (601)
T ss_pred HHHHHHhcCcHHHHHHHHHhHHHHHHHHHh--hcCCCCCCcccccCCCCChhhhccccchhhHHHHHHHHHHHhCCHHHH
Confidence 9999999998642 111112223333321 223345544333322 56788999999999999999999999 9999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhcCC----CCHHHH-HHHhhcCCCcceEEEEEe
Q psy13037 316 AHGVTSYLNEFQFKNAETNDLWSHLQKFANN----MSVTSV-MDTYTRQMGFPIITVKKS 370 (1094)
Q Consensus 316 ~~~l~~yl~~~~~~~~~~~df~~~l~~~~~~----~~l~~~-~~~W~~~~G~P~l~v~~~ 370 (1094)
+++|+.|+++|++++++++||++++.+...+ .+++.+ |++|++++|+|.++++.+
T Consensus 394 ~~~lr~Yl~~~~~~s~~t~df~~~l~~~~~~~~~~~~l~~~~~~~Wl~~~G~P~~~~~~~ 453 (601)
T TIGR02411 394 DPFLKHYFKKFAYKSLDTYQFKDALYEYFKDTGKVDKLNAVDWDTWLYSPGLPPVKPNFD 453 (601)
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhccccchhhhhhHHHHhcCCCCCCcCCCCC
Confidence 9999999999999999999999999876421 356666 899999999999887643
No 8
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=100.00 E-value=4e-52 Score=485.66 Aligned_cols=273 Identities=38% Similarity=0.702 Sum_probs=248.7
Q ss_pred ccccCCcceEEEEeeccceeEEEEeeceeecceeeeeeeeccCCCccceeeEEEEEecCCCcEEeecCCccccccCCCCC
Q psy13037 6 LKSQRTPKLVTLLVCTSAVLFVACVLSVTLLLLTRYISYHSSQPVRTHETWVRRSFDGGGGASGASEGPTKKSTDDQPGV 85 (1094)
Q Consensus 6 ~~~~~~~~~~t~~~p~~ar~~fPC~D~~~~~~~f~~~~~~~~~p~~~~~~~~~i~i~~p~~~~a~Sng~~~~~~~~~~~~ 85 (1094)
++....++++|.++|++||+||||+|+|+.|++| +++|++|++++|+|||++.++. ..++
T Consensus 118 ~~~~~~~~~~t~~~p~~ar~~fPc~D~p~~ka~f------------------~~~i~~p~~~~~~sng~~~~~~--~~~~ 177 (390)
T PF01433_consen 118 TNGNTRWYIYTQFEPNGARRWFPCFDEPSFKATF------------------DLTITHPKDYTALSNGPLEEEE--SNDD 177 (390)
T ss_dssp TSSSETCEEEEE-TTTTGGGTSSB--STTSEEEE------------------EEEEEEETTTEEEESSEEEEEE--EETT
T ss_pred cccccCCceeecccccccceeeeeeccCCccceE------------------EEeeeccccceeeccccccccc--cccc
Confidence 4556688999999999999999999999999999 9999999999999999999988 4568
Q ss_pred CeEEEEEcCCCCCccceeeeeeecceeeccccCCCCeeEEEEEcCCchhhHHHHHHHHHHHHHHHHHHhCCCCCCCcccE
Q psy13037 86 NQTTVEFATTVPMSTYLVCFIVCDFDHLPSQDAKQGFPIKVYAREGQLEHMEFAQKTAIAAINFYVEYFNISYPLPKLDL 165 (1094)
Q Consensus 86 ~~~~~~F~~t~pms~y~va~~vg~f~~~~~~~~~~~~~i~v~~~~~~~~~~~~~l~~~~~~l~~~e~~fg~~yP~~k~d~ 165 (1094)
++++++|..++|||+|++||+||+|...+.... +++++++|++|+..+.++++++.+.+++++|+++||++||++|+++
T Consensus 178 ~~~~~~f~~t~p~~~yl~a~~vg~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~yp~~k~~~ 256 (390)
T PF01433_consen 178 GWKTTTFETTPPMPTYLFAFAVGDFESVEVTTK-SGVPVRVYARPGDEEQLQFALDIAPKALEYYEEYFGIPYPFKKLDI 256 (390)
T ss_dssp TEEEEEEEEEEEEEGGG--EEEESEEEEEEETT-TEEEEEEEEECTCGGGHHHHHHHHHHHHHHHHHHHTS--SSSEEEE
T ss_pred cceeEeeecccccCchhhhhhcCcccccccccc-cccchheeehhhhHHHHHHHHHhhHHHHHHHHhhccccceecceeE
Confidence 899999999999999999999999999987764 4699999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCcccccccceeeecceeeecCCCCchhhhhhhhhhHhHHHHHHhhcCccccCCCchhhHhHHHHHHHHHHHHh
Q psy13037 166 IAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMGWWNDLWLNEGFASYMQYKALA 245 (1094)
Q Consensus 166 V~vp~~~~g~me~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~ 245 (1094)
|++|+|..|||||||+|++++..++++++.++...+..+..+||||+|||||||+||++||+|+||+||||+|+++++++
T Consensus 257 v~~p~~~~~~me~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~iahElahqWfGn~vt~~~w~d~WL~Eg~a~y~~~~~~~ 336 (390)
T PF01433_consen 257 VAVPDFPFGGMENWGLITYRESYLLYDPDISTIGDKQEIASLIAHELAHQWFGNLVTPKWWSDLWLNEGFATYLEYLILE 336 (390)
T ss_dssp EEEST-SSSEE--TTEEEEEGGGTS-STTTS-HHHHHHHHHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHH
T ss_pred EEEeccccccccccccccccccccccCcccccchhhhhhHHHHHHHHHHHHhccCCccccchhhhHHHHHHHHHHHHhHh
Confidence 99999999999999999999999999999888888999999999999999999999999999999999999999999999
Q ss_pred hcCcchhHHHHHHHHHHHHhhhccccCCCCCeeeccCCccccccccccchhchH
Q psy13037 246 KVEPTWEVDTMFLTDMLHSTLQLDQTLSSHPIVQTVSNPDQITEIFDVISYQKG 299 (1094)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~~~~~~~~~~~~~f~~i~Y~Kg 299 (1094)
+.+|++.+...+..+.++.++..|.....+|+...+.++.++...|+.+.|.||
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~~~~~~~~~~~~~f~~~~Y~KG 390 (390)
T PF01433_consen 337 KLFGEWQMMELFLVQEMQRALREDALPNSHPLSSEVEDPSDIDDMFDDISYNKG 390 (390)
T ss_dssp HHHGHHHHHHHHHHHHHHHHHHHHTSTTCCCSSSSSSSESCGGGGSSHHHHHHH
T ss_pred hccCcccchhhhhhhhHHHHHHHhhcCCCcceEeCCCCCCChHHhcCccccCCC
Confidence 999999999999999999999999999999999888899999999999999998
No 9
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=100.00 E-value=2.7e-48 Score=484.44 Aligned_cols=541 Identities=20% Similarity=0.230 Sum_probs=338.1
Q ss_pred cccceeEEEEeecCCC--cceeEEEEEEEEEeCcccEEEEEeccceeeeeecccCCCCCccccccceecccCceEEEEec
Q psy13037 474 VIPKMYDLYLNPYLGK--KLFTGTVKINIEVTNATGYIYLHKSSLTIEETTVFKGEDITPIDLLSTFDYAKNEYWVITFK 551 (1094)
Q Consensus 474 v~P~~Y~l~l~p~~~~--~~f~G~v~I~~~v~~~t~~i~lh~~~l~I~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 551 (1094)
|.|.||+|.|...-.. +.+.|.+.|.+++.++++.+.||..++.|.++.+. +. .... ...+-..|.++
T Consensus 14 ~~~~~Y~l~l~l~~~~~~~~~~~~~~i~~~~~~~~~~l~LD~~~l~I~~v~vn-g~-~~~~--------~~~~~~~i~l~ 83 (831)
T TIGR02412 14 ITVEHYEIALDLTGADEFFATRCVSTNTVRLSEPGADTFLDLLAAQIESVTLN-GI-LDVA--------PVYDGSRIPLP 83 (831)
T ss_pred ccceeEEEEEEccCCccccccceEEEEEEEEcCCCCcEEEEccCCEEEEEEEC-Cc-ccCc--------cccCCCEEEcc
Confidence 5689999999876443 45689999999999999999999999999888752 21 0000 11122346776
Q ss_pred cccCCceEEEEEEEEEeeCCCCeeEEEEEEecCCceEEEEEecCCCCccce-----------------------------
Q psy13037 552 ETIDPGSYVLKFKFKGNFSKKNEGFYESMYMNYKNHKRLIATSKFEPTYLW----------------------------- 602 (1094)
Q Consensus 552 ~~l~~g~y~L~i~f~g~l~~~~~GfYrs~Y~~~~~~~~~~~~t~~~pt~~~----------------------------- 602 (1094)
+ |.+|.|+|+|.|+|.+++++.|+||..+.. +| +....|||||+++.
T Consensus 84 ~-l~~g~~~l~i~~~~~~~~~~~Gl~~~~~~~-~g--~~~~~Tq~ep~~Ar~~fPcfDeP~~KAtf~ltit~p~~~~v~s 159 (831)
T TIGR02412 84 G-LLTGENTLRVEATRAYTNTGEGLHRFVDPV-DG--EVYLYTQFEPADARRVFAVFDQPDLKANFKFSVKAPEDWTVIS 159 (831)
T ss_pred C-CCCCceEEEEEEEEEecCCCceEEEEEeCC-CC--eEEEEECCCCcCceeeEecCCCCCCceeEEEEEEECCCceEEC
Confidence 6 888899999999999999999999944322 33 24567888885431
Q ss_pred ------------------------eeEEeeeeccCC--------ccchhhh-----------------------------
Q psy13037 603 ------------------------DVYITMFTSSDP--------SHTLHTW----------------------------- 621 (1094)
Q Consensus 603 ------------------------~~~~~~f~~~~r--------~~~l~~~----------------------------- 621 (1094)
.+|+.+|.+.+. ...+++|
T Consensus 160 Ng~~~~~~~~~~~~~~~F~~t~pmstYL~a~~vG~f~~~~~~~~gvpi~v~~~~~~~~~~~~~~al~~~~~~l~~~e~~f 239 (831)
T TIGR02412 160 NSRETDVTPEPADRRWEFPETPKLSTYLTAVAAGPYHSVQDESRSYPLGIYARRSLAQYLDADAIFTITRQGLAFFHRKF 239 (831)
T ss_pred CCccccccccCCCeEEEecCCCCcccceEEEEEeceEEEeecCCCEEEEEEECcchhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 123344433221 0000100
Q ss_pred --hhcCCCCceEecCCCCccccccccccceeeccccccCCCCchhhhhHHHHhhhhcccccccccccchhhHHHHHhccc
Q psy13037 622 --LYRNMSEDLIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMGWWNDLWLNEG 699 (1094)
Q Consensus 622 --~~~~~k~D~ialpdf~~gaMEnwGLityre~~lL~d~~~ss~~~k~~va~viahElahqWfGnlvt~~ww~~lwlnEG 699 (1094)
-||.+|+|+|++|+|.+|||||||+|+|+|.++ ++ ...+...|++++.+|+||+|||||||||||+||+++|||||
T Consensus 240 g~pYP~~k~d~V~vP~f~~GaMEn~Glit~~e~~l-~~-~~~~~~~~~~~~~viaHElAHqWFGnlVT~~wW~dlWLnEG 317 (831)
T TIGR02412 240 GYPYPFKKYDQIFVPEFNAGAMENAGCVTFAENFL-HR-AEATRAEKENRAGVILHEMAHMWFGDLVTMRWWNDLWLNES 317 (831)
T ss_pred CCCCCcccCCEEEcCCCCCCcccccceeeechhhc-cC-CcCCHHHHHHHHHHHHHHHHHHHhCCEeccccccchhHHHH
Confidence 156679999999999999999999999999954 44 33456788999999999999999999999999999999999
Q ss_pred chhhhhhhhhcccCchhHH--HHHHHHHHHHhhhccccccccchhhH-hHHhhhhcccccCCChhhHHHH--HHHHHHHh
Q psy13037 700 FASYMQYKALAKVEPTWEV--LYIRCLLKDKLSEETWKVENKSYLEV-NLKLVLNDLGCNFGAPSCLKKA--ADLLKNWF 774 (1094)
Q Consensus 700 fa~y~~~~~~~~~~Pe~~~--~f~~~~l~~~~~~~~~~~~~~s~~~~-~lr~~~~~~a~~~g~~~~~~~a--~~~f~~~~ 774 (1094)
||+|++++++++++|+|.. +|.......++..+.. ..+|... ... ........++...|-|++ .+|+..++
T Consensus 318 FAty~e~~~~~~~~~~~~~~~~f~~~~~~~a~~~D~~---~~t~Pi~~~~~-~~~~~~~~fd~isY~KGa~vL~mL~~~l 393 (831)
T TIGR02412 318 FAEYMGTLASAEATEYTDAWTTFAAQGKQWAYEADQL---PTTHPIVADVA-DLADALSNFDGITYAKGASVLKQLVAWV 393 (831)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhcc---cCCCCCccCCC-CHHHHHHhccCccchhHHHHHHHHHHHH
Confidence 9999999999999998763 5655444444443322 1112110 000 000000112222333332 24444444
Q ss_pred cCCCCCcchHhHHHhhhcccccchhHHHHHHHHHhhcCC----------------cccc-------eeee-ccccc--cc
Q psy13037 775 DSGVKPEADLRGLVYRYGMENVGEEEWKKMWAKFREESN----------------PQEQ-------IKML-GGLSS--VK 828 (1094)
Q Consensus 775 ~~~~~~~~~l~~~v~~~~~~~~~~~~~~~l~~~~~~~~~----------------~~~~-------~~~l-~~l~~--~~ 828 (1094)
+.. ..-..++..+-.+. ++....+++|+.+.+.+. +.-. ..+. ..... ..
T Consensus 394 Gee-~F~~glr~Yl~~~~---~~nat~~Dl~~~l~~~sg~dl~~~~~~W~~~~G~P~l~v~~~~~~~~~~~~~~~~~~~~ 469 (831)
T TIGR02412 394 GEE-AFFAGVNAYFKRHA---FGNATLDDLIDSLAKASGRDLSAWSDAWLETAGVNTLTPEITTDGGVVSALYPESSGPP 469 (831)
T ss_pred CHH-HHHHHHHHHHHHcC---CCCCCHHHHHHHHHHHhCCCHHHHHHHHHcCCCCceEEEEEEECCCeEEEEEEecCCCC
Confidence 420 00011111111111 111222222322222111 0000 0000 00000 00
Q ss_pred cCceeeeeeecccCCccccc-e--------eeEEE--------EEeeccCCC-CccEEEEeccccHHHHHHhhcCCcccc
Q psy13037 829 EPKLLEKFLEMAKDEKNIRS-Q--------DYFTV--------IVMVAGNPK-GLPVAWDYVKKNWDYLVKRFGLNHRVF 890 (1094)
Q Consensus 829 ~~~~l~~~L~~~~~~~~~~~-q--------d~~~~--------~~~~~~n~~-g~~~~~~y~~~nw~~l~~~l~~~~~~~ 890 (1094)
.+|.++--+ ....+..... . ....+ ..++..|.. ..+++++|+.++|+.|.+.+....
T Consensus 470 ~~~~ip~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~N~~~~gyyrv~yd~~~~~~l~~~l~~~~--- 545 (831)
T TIGR02412 470 RPHRIAIGL-YDLDRDDLRRTTLVPLTISGERTAVPQLVGKRAPALVLLNDDDLTYAKVRLDPTSFDTVLAALSKLP--- 545 (831)
T ss_pred CCeeEEEee-eecCCCcceeeeEEEEEEecCceeehhhcCCCCCCEEEEeCCCcEEEEEECCHHHHHHHHHHhhhCC---
Confidence 112111000 0000000000 0 00000 012222322 234678999999999988874221
Q ss_pred cccccccccccchhhhhhhccCccchhhhHHHHHHHHHcCCccHHHHHHHH-HHHhhCCCcccHHHHHHhHH-HHHHHhc
Q psy13037 891 GRIIPSVCGKFTTQERLDEVLDARDRSNLLDDAFNLAESQMIEYSTTFNLM-KYMSKEDHFVPWTVVYNKLS-RLDDKLY 968 (1094)
Q Consensus 891 ~~ii~~~~~~~~t~~~~~~l~~f~~R~~lidDa~~la~~g~l~y~~~~~~~-~yl~~E~~y~pW~~a~~~l~-~l~~~l~ 968 (1094)
+.++|+++++|+++++++|.++++.+++++ .||.+|++|.||.+++..+. .+..++.
T Consensus 546 ---------------------~~~~R~~l~~d~~~~~~~g~~~~~~~l~l~~~~l~~E~~~~v~~~~~~~l~~~~~~~~~ 604 (831)
T TIGR02412 546 ---------------------DPLSRAVVWASLWDSVRDGELSPDDYLSTVFAHVPSETDYAVVQQVLSQLLRAVAAQYA 604 (831)
T ss_pred ---------------------ChhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHhC
Confidence 125899999999999999999999999955 89999999999999999999 7876652
Q ss_pred cccCcccccccccccccccccchhhHHHHHHHHHHHhhhccccccCCccHHHHHHHHHHHHHhhhcCChhHHHHHHHHHH
Q psy13037 969 STEGHEDFKLSRLDDKLYSTEGHEDFKLYIRCLLKDKLSEETWKVENKSYLEVNLKLVLNDLGCNFGAPSCLKKAADLLK 1048 (1094)
Q Consensus 969 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~lr~~i~~~aC~~g~~~c~~~A~~~F~ 1048 (1094)
. .+.+..|++|+..++.+.... ++++.+.+++ .+..+||..|+++|+++++++|+
T Consensus 605 ~------------------~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 659 (831)
T TIGR02412 605 P------------------IADRPALLAVAALACRSLRRA------MESGPDFQLR-WLRALALTATDPDSLRRLLSLLD 659 (831)
T ss_pred C------------------HHHHHHHHHHHHHHHHHHHhc------cCCCccHHHH-HHHHHHHhcCCHHHHHHHHHHHh
Confidence 2 245778999998888754321 2222333343 35568999999999999999999
Q ss_pred HHHcCCCCCCCChhHHhhHhhhcccccchhHHHHHHHhhcccc
Q psy13037 1049 NWFDSGVKPEADLRGLVYRYVQALPRRGNELQKKENRLRKENT 1091 (1094)
Q Consensus 1049 ~~~~~~~~i~~dlr~~Vyc~~~~~~~~~~~~~~~~~~~~~~~~ 1091 (1094)
.|+++ ..||||+|..|||.+++. +..+|+.++++|+++++
T Consensus 660 ~~~~~-~~i~~dlr~~v~~~~~~~--~~~~~~~l~~~~~~~~~ 699 (831)
T TIGR02412 660 GKIKG-LALDPDLRWRIIARLAAL--GFIDADDIAAELERDNT 699 (831)
T ss_pred CCCCC-cccCHhHHHHHHHHHHhc--CCCCHHHHHHHHhcCCC
Confidence 98765 478999999999965543 34449999999988765
No 10
>KOG1047|consensus
Probab=100.00 E-value=1.2e-46 Score=412.15 Aligned_cols=329 Identities=19% Similarity=0.332 Sum_probs=273.9
Q ss_pred CCCccccccCCcceEEEEeeccceeEEEEeeceeecceeeeeeeeccCCCccceeeEEEEEecCCCcEEeecCCcccccc
Q psy13037 1 MKHDSLKSQRTPKLVTLLVCTSAVLFVACVLSVTLLLLTRYISYHSSQPVRTHETWVRRSFDGGGGASGASEGPTKKSTD 80 (1094)
Q Consensus 1 ~~~~~~~~~~~~~~~t~~~p~~ar~~fPC~D~~~~~~~f~~~~~~~~~p~~~~~~~~~i~i~~p~~~~a~Sng~~~~~~~ 80 (1094)
+.+.+|.+.++|+|||.++-.-||.+|||+|.|+.|.|+ +..+.+|.++++++++......
T Consensus 118 L~peQT~gk~~PylfsQCQAIhaRsi~PC~DTPavK~ty------------------~a~v~vp~~l~a~mSai~~~~~- 178 (613)
T KOG1047|consen 118 LNPEQTSGKKHPYLFSQCQAIHARSIFPCQDTPAVKSTY------------------TAEVEVPMGLTALMSAIPAGEK- 178 (613)
T ss_pred eccccccCCCCCchHHHHHHhHHheeccccCCCcceeEE------------------EEEEEcCCcceeeeeccccccC-
Confidence 457889999999999999999999999999999999999 9999999999999999776666
Q ss_pred CCCCCCeEEEEEcCCCCCccceeeeeeecceeeccccCCCCeeEEEEEcCCchhhHHHHHH-HHHHHHHHHHHHhCCCCC
Q psy13037 81 DQPGVNQTTVEFATTVPMSTYLVCFIVCDFDHLPSQDAKQGFPIKVYAREGQLEHMEFAQK-TAIAAINFYVEYFNISYP 159 (1094)
Q Consensus 81 ~~~~~~~~~~~F~~t~pms~y~va~~vg~f~~~~~~~~~~~~~i~v~~~~~~~~~~~~~l~-~~~~~l~~~e~~fg~~yP 159 (1094)
+...+...+.|.+..|+|+|++||++|+.+..+. |..-+||+.|...+..++-+. .+.++|..-|+.+| ||+
T Consensus 179 -~~~~~~~~f~f~q~~pIP~YLiai~~G~L~s~eI-----gpRs~VwaEp~~~~a~~~ef~~~~e~~L~~Ae~l~G-pY~ 251 (613)
T KOG1047|consen 179 -PGSNGRAIFRFKQEVPIPSYLIAIAVGDLESREI-----GPRSRVWAEPCLLDACQEEFAGETEDFLKAAEKLFG-PYV 251 (613)
T ss_pred -CCCCCcceEEEEeccCchhhhHHHhhcccccccc-----CCccceecchhhhHHHHHHHHhhhHHHHHHHHHHcC-Ccc
Confidence 5667789999999999999999999999887664 566899999999988877777 89999999999999 999
Q ss_pred CCcccEEEcC-CCCCcccccccceeeecceeeecCCCCchhhhhhhhhhHhHHHHHHhhcCccccCCCchhhHhHHHHHH
Q psy13037 160 LPKLDLIAIP-DFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMGWWNDLWLNEGFASY 238 (1094)
Q Consensus 160 ~~k~d~V~vp-~~~~g~me~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfA~y 238 (1094)
+.+||++++| +|++|||||+.+.+...+.| -. ......+|||||||.||||+||...|.+.||||||+.|
T Consensus 252 WgryDllvlPpSFP~gGMENPcltF~TpTll-aG--------Drsl~~vIaHEIAHSWtGNlVTN~sWehfWLNEGfTvy 322 (613)
T KOG1047|consen 252 WGRYDLLVLPPSFPFGGMENPCLTFVTPTLL-AG--------DRSLVDVIAHEIAHSWTGNLVTNASWEHFWLNEGFTVY 322 (613)
T ss_pred cccceEEEecCCCCcccccCcceeeecchhh-cC--------CcchhhHHHHHhhhhhcccccccCccchhhhcccchhh
Confidence 9999999985 99999999999888776543 22 22346799999999999999999999999999999999
Q ss_pred HHHHHHhhcCcchhH--HHHHHHHHHHHhhhccccCCCCCeee---ccCCccccccccccchhchHHHHHHHHHHHhC-H
Q psy13037 239 MQYKALAKVEPTWEV--DTMFLTDMLHSTLQLDQTLSSHPIVQ---TVSNPDQITEIFDVISYQKGSSVIRMLENMMG-E 312 (1094)
Q Consensus 239 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~~~~~pl~~---~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG-~ 312 (1094)
++..+...++|+... +...-...++..+ |.....++... ...+ -+.+..|+.+.|.||..+++.|++.+| +
T Consensus 323 lErrI~g~~~g~~~~~f~a~~gw~~L~~~~--d~~g~~~~~tkLv~kl~~-~dPDdafs~VpYeKG~~ll~~Le~~lG~~ 399 (613)
T KOG1047|consen 323 LERRIVGRLYGEAYRQFEALIGWRELRPSM--DLFGETSEFTKLVVKLEN-VDPDDAFSQVPYEKGFALLFYLEQLLGDP 399 (613)
T ss_pred hhhhhhhhhcchhHHHHHHhcChhhhhhHH--HhcCCCcccchhhhhccC-CChHHhhhcCchhhhhHHHHHHHHHhCCh
Confidence 999999999986431 1111112222222 33444555543 2333 345678999999999999999999998 6
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCC---CC-HHH-HHHHhhcCCCcceEEE
Q psy13037 313 ESFAHGVTSYLNEFQFKNAETNDLWSHLQKFANN---MS-VTS-VMDTYTRQMGFPIITV 367 (1094)
Q Consensus 313 e~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~~~---~~-l~~-~~~~W~~~~G~P~l~v 367 (1094)
+.|...||.|+++|+++++.++||.+.+-+...+ ++ +.+ -++.|++.+|.|...-
T Consensus 400 ~~Fd~FLr~Yv~kfa~ksI~t~dfld~Lye~fpe~kk~dil~~vd~~~Wl~~~G~Pp~~p 459 (613)
T KOG1047|consen 400 TRFDPFLRAYVHKFAFKSILTQDFLDFLYEYFPELKKKDILDEVDWDLWLNSPGMPPPKP 459 (613)
T ss_pred hhHHHHHHHHHHHhccceecHHHHHHHHHHhCcchhhhhhhccccHHHHhcCCCCCCCCC
Confidence 7799999999999999999999999999888764 22 222 3899999999998553
No 11
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=100.00 E-value=3.3e-39 Score=376.78 Aligned_cols=266 Identities=36% Similarity=0.674 Sum_probs=207.5
Q ss_pred CCCCccccceeEEEEeecCCCcceeEEEEEEEEEeCcccEEEEEeccceeeeeecccCCCCCccccccceecccCceEEE
Q psy13037 469 RLETTVIPKMYDLYLNPYLGKKLFTGTVKINIEVTNATGYIYLHKSSLTIEETTVFKGEDITPIDLLSTFDYAKNEYWVI 548 (1094)
Q Consensus 469 RLP~~v~P~~Y~l~l~p~~~~~~f~G~v~I~~~v~~~t~~i~lh~~~l~I~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 548 (1094)
|||++|+|+||+|.|.|+++...|+|.|.|++++.++++.|+||++++.|.++.+..................+.+.+.|
T Consensus 1 RLp~~v~p~~Y~L~L~~~~~~~~f~G~v~I~~~~~~~~~~I~L~~~~l~I~~v~~~~~~~~~~~~~~~~~~~~~~~~l~I 80 (390)
T PF01433_consen 1 RLPDDVDPLHYDLDLTPDFEKRTFSGTVTITFEVTEPTNSIVLHAKDLSISSVSLNGNDSSSEYKSSPFEYDDENEKLTI 80 (390)
T ss_dssp S--TTEEEEEEEEEEEEETTTTEEEEEEEEEEEESSTECEEEEEESSEEEEEEEETTEECSCTECCEEEEEECCBTEEEE
T ss_pred CCCCCeEEEEEEEEEEEeCCCCEEEEEEEEEEEEecCCCEEEEEeeccEEEEEeecCccccccccccceeeccccceeeh
Confidence 99999999999999999999999999999999999999999999999999987664322111111111233456778999
Q ss_pred EeccccCCc-eEEEEEEEEEeeCCCCeeEEEEEEec-CCceEEEEEecCCCCccc------ee-----------------
Q psy13037 549 TFKETIDPG-SYVLKFKFKGNFSKKNEGFYESMYMN-YKNHKRLIATSKFEPTYL------WD----------------- 603 (1094)
Q Consensus 549 ~~~~~l~~g-~y~L~i~f~g~l~~~~~GfYrs~Y~~-~~~~~~~~~~t~~~pt~~------~~----------------- 603 (1094)
.++++|.+| .|+|+|.|+|.+++++.|+|+++|.+ .++....+..|+++|.++ +|
T Consensus 81 ~l~~~l~~g~~~~L~I~y~g~~~~~~~G~~~~~y~~~~~~~~~~~~~t~~~p~~ar~~fPc~D~p~~ka~f~~~i~~p~~ 160 (390)
T PF01433_consen 81 TLPKPLPPGSNYTLRIEYSGKISDDSSGLYRSSYTDQTNGNTRWYIYTQFEPNGARRWFPCFDEPSFKATFDLTITHPKD 160 (390)
T ss_dssp EEEEECSTTEEEEEEEEEEEECBSSSSEEEEEEEE-GTSSSETCEEEEE-TTTTGGGTSSB--STTSEEEEEEEEEEETT
T ss_pred hhhhhcccCcEEEEEEEEeecccccccccccceeecccccccCCceeecccccccceeeeeeccCCccceEEEeeecccc
Confidence 999999999 59999999999999999999999997 556667777888888543 11
Q ss_pred -------------------------------eEEeeeeccCC--------c-cchhhhh---------------------
Q psy13037 604 -------------------------------VYITMFTSSDP--------S-HTLHTWL--------------------- 622 (1094)
Q Consensus 604 -------------------------------~~~~~f~~~~r--------~-~~l~~~~--------------------- 622 (1094)
.|+.+|.+.+. . ..+.+|.
T Consensus 161 ~~~~sng~~~~~~~~~~~~~~~~f~~t~p~~~yl~a~~vg~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~ 240 (390)
T PF01433_consen 161 YTALSNGPLEEEESNDDGWKTTTFETTPPMPTYLFAFAVGDFESVEVTTKSGVPVRVYARPGDEEQLQFALDIAPKALEY 240 (390)
T ss_dssp TEEEESSEEEEEEEETTTEEEEEEEEEEEEEGGG--EEEESEEEEEEETTTEEEEEEEEECTCGGGHHHHHHHHHHHHHH
T ss_pred ceeeccccccccccccccceeEeeecccccCchhhhhhcCcccccccccccccchheeehhhhHHHHHHHHHhhHHHHHH
Confidence 01112222211 0 0111121
Q ss_pred --------hcCCCCceEecCCCCccccccccccceeeccccccCCCCchhhhhHHHHhhhhcccccccccccchhhHHHH
Q psy13037 623 --------YRNMSEDLIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMGWWNDL 694 (1094)
Q Consensus 623 --------~~~~k~D~ialpdf~~gaMEnwGLityre~~lL~d~~~ss~~~k~~va~viahElahqWfGnlvt~~ww~~l 694 (1094)
||..|+|+|++|+|..|||||||+|+|+|..++++++.++..+++.++.+||||+|||||||+||++||+++
T Consensus 241 ~~~~~g~~yp~~k~~~v~~p~~~~~~me~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~iahElahqWfGn~vt~~~w~d~ 320 (390)
T PF01433_consen 241 YEEYFGIPYPFKKLDIVAVPDFPFGGMENWGLITYRESYLLYDPDISTIGDKQEIASLIAHELAHQWFGNLVTPKWWSDL 320 (390)
T ss_dssp HHHHHTS--SSSEEEEEEEST-SSSEE--TTEEEEEGGGTS-STTTS-HHHHHHHHHHHHHHHHTTTBTTTEEESSGGGH
T ss_pred HHhhccccceecceeEEEEeccccccccccccccccccccccCcccccchhhhhhHHHHHHHHHHHHhccCCccccchhh
Confidence 556689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccchhhhhhhhhcccCchhHH--HHHHHHHHHHhhhccc
Q psy13037 695 WLNEGFASYMQYKALAKVEPTWEV--LYIRCLLKDKLSEETW 734 (1094)
Q Consensus 695 wlnEGfa~y~~~~~~~~~~Pe~~~--~f~~~~l~~~~~~~~~ 734 (1094)
||+||||+|+++.++++++|+|+. .|....++.++..++.
T Consensus 321 WL~Eg~a~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 362 (390)
T PF01433_consen 321 WLNEGFATYLEYLILEKLFGEWQMMELFLVQEMQRALREDAL 362 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHGHHHHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHhHhhccCcccchhhhhhhhHHHHHHHhhc
Confidence 999999999999999999998874 5777777777776655
No 12
>KOG1932|consensus
Probab=100.00 E-value=3.4e-33 Score=327.64 Aligned_cols=320 Identities=20% Similarity=0.248 Sum_probs=256.9
Q ss_pred ccCCcceEEEEee--ccceeEEEEeeceeecceeeeeeeeccCCCccceeeEEEEEecCCCcEEeecCCccccccCCCCC
Q psy13037 8 SQRTPKLVTLLVC--TSAVLFVACVLSVTLLLLTRYISYHSSQPVRTHETWVRRSFDGGGGASGASEGPTKKSTDDQPGV 85 (1094)
Q Consensus 8 ~~~~~~~~t~~~p--~~ar~~fPC~D~~~~~~~f~~~~~~~~~p~~~~~~~~~i~i~~p~~~~a~Sng~~~~~~~~~~~~ 85 (1094)
+-+.+|+||...+ .+||+||||+|+++.+|+| +++|++|+.++++++|.+.++...+ +-
T Consensus 168 ~~~~~hvft~~~~~~s~ar~WfPCvD~~~e~~tW------------------eLeftvp~~~~av~~geLl~~v~~~-D~ 228 (1180)
T KOG1932|consen 168 SPRDKHVFTNNTQISSSARSWFPCVDSSYERCTW------------------ELEFTVPKNLVAVSCGELLEQVETP-DL 228 (1180)
T ss_pred CcccCceEeecCccccccceEEeecCCccccceE------------------EEEEEecccceeccchhhhheeecc-cc
Confidence 3677899996665 5679999999999999999 9999999999999999999988533 56
Q ss_pred CeEEEEEcCCCCCccceeeeeeecceeeccccCCCCeeEEEEEcCCchhhHHHHHHHHHHHHHHHHHHhCCCCCCCcccE
Q psy13037 86 NQTTVEFATTVPMSTYLVCFIVCDFDHLPSQDAKQGFPIKVYAREGQLEHMEFAQKTAIAAINFYVEYFNISYPLPKLDL 165 (1094)
Q Consensus 86 ~~~~~~F~~t~pms~y~va~~vg~f~~~~~~~~~~~~~i~v~~~~~~~~~~~~~l~~~~~~l~~~e~~fg~~yP~~k~d~ 165 (1094)
+.++++|..+.|+++..||||||+|+....+ .+++|..||.|+..+..+...-.+.++++|||+.+|..|||+.|.+
T Consensus 229 ~Kkt~~ys~tvPvA~~~I~~AiG~F~~~~~P---~~~~i~~f~LP~~~~~v~nt~~~l~k~iefye~~ls~rYPF~~~k~ 305 (1180)
T KOG1932|consen 229 RKKTYHYSLTVPVAPSNIGFAIGPFKSYVEP---SMIDITHFCLPGLEPLVKNTTVYLHKAIEFYEEELSSRYPFSCYKT 305 (1180)
T ss_pred cccEEEEEEeccCCccccceeeccccccCCC---ccCcceeEecCcchHHhhhHHHHHHHHHHHHHHHhccCCCcceeeE
Confidence 7899999999999999999999999999554 5799999999999999999999999999999999998899999999
Q ss_pred EEcCCCCCcccccccceeeecceeeecCCCCchhhhhhhhhhHhHHHHHHhhcCccccCCCchhhHhHHHHHHHHHHHHh
Q psy13037 166 IAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMGWWNDLWLNEGFASYMQYKALA 245 (1094)
Q Consensus 166 V~vp~~~~g~me~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~ 245 (1094)
|++|....--|....|.++.. .+||+.+. +++.......+|-.+|.||||.+++|..|+|.||.+|+|.|+..++++
T Consensus 306 VFvd~~~~~i~~~asl~I~st-~lLy~~~i--IDq~~~tr~~La~aLA~Q~fg~yIsp~~wsD~Wl~~GiagYl~~l~~k 382 (1180)
T KOG1932|consen 306 VFVDEAAVEISSYASLSIFST-SLLYSKNI--IDQTFLTRRKLAWALASQWFGVYISPVDWSDFWLLKGIAGYLTGLFVK 382 (1180)
T ss_pred EEecCCcceeeecceeeeeec-cccchHhh--hhHHHHHHHHHHHHHHHhhhEEEeeccchhhhHHHHhHHHHHHHHHHH
Confidence 999987777777777777665 58888754 456667778999999999999999999999999999999999999999
Q ss_pred hcCcchhHHHHHHHHHHHHhhhccccCC----CCCeeeccC----Ccc--c--------cccccccchhchHHHHHHHHH
Q psy13037 246 KVEPTWEVDTMFLTDMLHSTLQLDQTLS----SHPIVQTVS----NPD--Q--------ITEIFDVISYQKGSSVIRMLE 307 (1094)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~pl~~~~~----~~~--~--------~~~~f~~i~Y~Kg~~vl~mL~ 307 (1094)
+++|+.+++.+ +.+.+..+..+|.... +.|+..... .+- + .+..|..-.-.|+..+.+|++
T Consensus 383 k~lGNNEyry~-lKk~~d~V~~~d~~~g~i~l~~Pi~~s~k~~~~~~~~lh~~~r~~~~~s~~~~~a~~~k~~~~~~m~~ 461 (1180)
T KOG1932|consen 383 KFLGNNEYRYQ-LKKALDAVVDYDVQKGAIYLTRPISPSMKFKLKGPFHLHISIRHLHTLSGSYGMAFVIKKLLLQRMSG 461 (1180)
T ss_pred HHhCchHHHHH-HHHHHHHHHHhhhccCceeeccCCCcchhhcccCcceeeecccceeecChhHHHHHHHHHHHHHHHhh
Confidence 99998876544 4667777777776332 113322111 000 0 111222222458888889999
Q ss_pred HHhCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCHHHHHHHhhcCCCcceEEEEEeC
Q psy13037 308 NMMGEESFAHGVTSYLNEFQFKNAETNDLWSHLQKFANNMSVTSVMDTYTRQMGFPIITVKKSG 371 (1094)
Q Consensus 308 ~~lG~e~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~~~~~l~~~~~~W~~~~G~P~l~v~~~~ 371 (1094)
+.+|.+.|.+.+++.+.. +.. ..++.||+.|++..|+|.+.+....
T Consensus 462 ~~i~~e~~~q~f~kv~~~-----------------~~~-~~~k~~~~~Wv~~~g~~~~r~~~~~ 507 (1180)
T KOG1932|consen 462 NRINEELSFQVFNKVLEL-----------------ASK-MLLKSFFQTWVYGLGVPILRLGQRF 507 (1180)
T ss_pred ccccccHHHHHHHHHHHh-----------------hhh-hHHHHHHHHHHhccCCeeEEEEEEE
Confidence 999888877666555432 222 2358899999999999999887544
No 13
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=99.98 E-value=5.7e-32 Score=324.39 Aligned_cols=234 Identities=21% Similarity=0.291 Sum_probs=170.8
Q ss_pred CCccccceeEEEEeecCCCcceeEEEEEEEEEeCc-ccEEEEEeccceeeeeecccCCCCCccccccceecccCceEEEE
Q psy13037 471 ETTVIPKMYDLYLNPYLGKKLFTGTVKINIEVTNA-TGYIYLHKSSLTIEETTVFKGEDITPIDLLSTFDYAKNEYWVIT 549 (1094)
Q Consensus 471 P~~v~P~~Y~l~l~p~~~~~~f~G~v~I~~~v~~~-t~~i~lh~~~l~I~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 549 (1094)
|..++|.||+|.|.+++++.+|+|.|.|++++.++ ++.|+||+.+|.|.++.+. +...... ... -.....+.|+|.
T Consensus 8 ~~~~~~~hy~L~L~vd~~~~~~~G~v~i~l~~~~~~~~~i~Ld~~~L~I~~V~v~-g~~~~~~-~~~-~~~~~g~~L~I~ 84 (601)
T TIGR02411 8 YKDFRTSHTDLNLSVDFTKRKLSGSVTFTLQSLTDNLNSLVLDTSYLDIQKVTIN-GLPADFA-IGE-RKEPLGSPLTIS 84 (601)
T ss_pred CCCcEEEEEEEEEEEeecCCEEEEEEEEEEEECCCCCcEEEEECCCCEEEEEEEC-CcccceE-ecc-ccCCCCCeEEEE
Confidence 56799999999999999999999999999999765 4889999999999988653 2111100 000 011245789999
Q ss_pred eccccCCc-eEEEEEEEEEeeCCCCeeEEEEEEecCCceEEEEEecCCCCccce------e-------------------
Q psy13037 550 FKETIDPG-SYVLKFKFKGNFSKKNEGFYESMYMNYKNHKRLIATSKFEPTYLW------D------------------- 603 (1094)
Q Consensus 550 ~~~~l~~g-~y~L~i~f~g~l~~~~~GfYrs~Y~~~~~~~~~~~~t~~~pt~~~------~------------------- 603 (1094)
+++++.+| .|+|+|.|+|.. +..|++...+...+|.+.....||+||+++. |
T Consensus 85 l~~~l~~g~~~~l~I~Y~~~~--~~~gl~~~~~~~t~g~~~py~~Tq~qp~~AR~~fPC~D~P~~Katf~~~I~~P~~av 162 (601)
T TIGR02411 85 LPIATSKNKELVLNISFSTTP--KCTALQWLTPEQTSGKKHPYLFSQCQAIHARSVIPCQDTPSVKSTYTAEVESPLPVL 162 (601)
T ss_pred eCCccCCCceEEEEEEEeecC--CCceeEEecccccCCCCCCEEEECCcccchheeeeecCCcccceEEEEEEeeCccee
Confidence 99999999 799999999964 4568765333222233333445688775431 1
Q ss_pred -------------------------eEEeeeeccCCc-----cchhhh-----------------------------hhc
Q psy13037 604 -------------------------VYITMFTSSDPS-----HTLHTW-----------------------------LYR 624 (1094)
Q Consensus 604 -------------------------~~~~~f~~~~r~-----~~l~~~-----------------------------~~~ 624 (1094)
.|+.+|.+.+.. ..+++| -||
T Consensus 163 ~sg~~~~~~~~~~~~~~F~~t~pmptYLia~avG~~~~~~~g~~~~v~~~p~~~~~~~~~~~~~~~~~l~~~e~~~~pYp 242 (601)
T TIGR02411 163 MSGIPDGETSNDPGKYLFKQKVPIPAYLIALASGDLASAPIGPRSSVYSEPEQLEKCQYEFEHDTENFIKTAEDLIFPYE 242 (601)
T ss_pred ccCCccccccCCCceEEEEeCCCcchhhheeeeccceecccCCceEEEccchhHHHHHHHHHHhHHHHHHHHHHhCCCCc
Confidence 122223322110 001111 155
Q ss_pred CCCCceEec-CCCCccccccccccceeeccccccCCCCchhhhhHHHHhhhhcccccccccccchhhHHHHHhcccchhh
Q psy13037 625 NMSEDLIAI-PDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMGWWNDLWLNEGFASY 703 (1094)
Q Consensus 625 ~~k~D~ial-pdf~~gaMEnwGLityre~~lL~d~~~ss~~~k~~va~viahElahqWfGnlvt~~ww~~lwlnEGfa~y 703 (1094)
-.|+|++++ |+|.+||||||| ++|++..+|.+. |. .+.+||||+||||||||||++||+++|||||||+|
T Consensus 243 ~~k~d~vvlpp~f~~GgMEN~~-ltf~~~~ll~~d-------~s-~~~viaHElAHqWfGNlVT~~~W~d~WLnEGfaty 313 (601)
T TIGR02411 243 WGQYDLLVLPPSFPYGGMENPN-LTFATPTLIAGD-------RS-NVDVIAHELAHSWSGNLVTNCSWEHFWLNEGWTVY 313 (601)
T ss_pred CccceEEEecCccccccccccc-ceeeccccccCC-------hh-hhhhHHHHHHhhccCceeecCCchHHHHHhhHHHH
Confidence 569999987 799999999999 689988887653 32 35799999999999999999999999999999999
Q ss_pred hhhhhhcccCchhHH
Q psy13037 704 MQYKALAKVEPTWEV 718 (1094)
Q Consensus 704 ~~~~~~~~~~Pe~~~ 718 (1094)
+++.+++.++|++..
T Consensus 314 ~e~~~~~~~~~e~~~ 328 (601)
T TIGR02411 314 LERRIVGRLYGEKTR 328 (601)
T ss_pred HHHHHHHHhcCcHHH
Confidence 999999999999753
No 14
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=99.97 E-value=2e-30 Score=323.61 Aligned_cols=250 Identities=30% Similarity=0.526 Sum_probs=175.9
Q ss_pred CCCcccc-ce--eEEEEeecCCC--cceeEEEEEEEEE--eCcccEEEEEeccceeeeeecccCCCCCccccccceeccc
Q psy13037 470 LETTVIP-KM--YDLYLNPYLGK--KLFTGTVKINIEV--TNATGYIYLHKSSLTIEETTVFKGEDITPIDLLSTFDYAK 542 (1094)
Q Consensus 470 LP~~v~P-~~--Y~l~l~p~~~~--~~f~G~v~I~~~v--~~~t~~i~lh~~~l~I~~~~~~~~~~~~~~~~~~~~~~~~ 542 (1094)
++..+.| .+ |++.|..++.. .+|+|.+.|.++. ..+...|+||+.++.|..+.+....... .....
T Consensus 13 ~~~~~~~~~~~i~~~~Ld~~~~~~~~~~~g~~~i~~~~~~~~~~~~lvld~~~l~i~~v~idg~~~~~-------~~~~~ 85 (859)
T COG0308 13 LSLDYRPPEYAIYDIDLDLDLDPEKTTFEGSVTIRLDAGWRSGADPLVLDAVGLEIRSVKIDGKALTA-------WYRLD 85 (859)
T ss_pred ccccCCCccccccceEEEeeecCCccEEEEEEEEEEeccccCCCCeEEEeccccEEEEEEEcCccccc-------ccccc
Confidence 4444444 88 88888877764 7999999999987 3333449999999999887764321000 01122
Q ss_pred CceEEEEecccc-----CCceEEEEEEEEEeeC-CCCeeEEEEEEecCCceEEEEEecCCCCccc------e--------
Q psy13037 543 NEYWVITFKETI-----DPGSYVLKFKFKGNFS-KKNEGFYESMYMNYKNHKRLIATSKFEPTYL------W-------- 602 (1094)
Q Consensus 543 ~~~l~i~~~~~l-----~~g~y~L~i~f~g~l~-~~~~GfYrs~Y~~~~~~~~~~~~t~~~pt~~------~-------- 602 (1094)
.+.+.|....+. .++.+.+.+.|.|..+ +.+.|+|++.|.. ..+..||+|+..+ +
T Consensus 86 ~~~~~i~~~~~~~~~~~~~~~l~i~~~~~~~~s~~~~~Gly~~~~~~-----~~~~~TQ~Ea~~aR~~fpc~D~P~~kat 160 (859)
T COG0308 86 GDALTITVAPPIPERSERPFTLAITYEFTGPVSNDTLEGLYRSGYGG-----KPYLITQCEAEGARRIFPCIDEPDVKAT 160 (859)
T ss_pred CccceeeeccccccccCCCccEEEEEEecccccCccccceeecCCCC-----CeeEEeecccCCCceeeecCCCCCCcce
Confidence 333344333332 3346999999999998 7899999987753 3334566665321 1
Q ss_pred ----------------------------------------eeEEeeeeccC------------Cccchhhhh--------
Q psy13037 603 ----------------------------------------DVYITMFTSSD------------PSHTLHTWL-------- 622 (1094)
Q Consensus 603 ----------------------------------------~~~~~~f~~~~------------r~~~l~~~~-------- 622 (1094)
.+|+.++.+.+ +...+.+|.
T Consensus 161 f~~~i~~~k~~~~iSN~~~~~~~~~~~g~~~~~f~~~~~mptYL~al~~G~~~~~~~~~~~~~~~v~l~iy~~~g~~~~a 240 (859)
T COG0308 161 FTLTIRADKGPKLISNGNLIDGGTLVDGRKIVKFEDTPPMPTYLFALVAGDLEVFRDKFDTRSRDVPLEIYVPPGVLDRA 240 (859)
T ss_pred eEEEEEecCcceeeecCCccccccccCCcEEEEEcCCCCcchHhhheeeecceeeeeeeccCCCCeeEEEEecCcchhhh
Confidence 11222221111 111112121
Q ss_pred ---------------------hcCCCCceEecCCCCccccccccccceeeccccccCCCCchhhhhHHHHhhhhcccccc
Q psy13037 623 ---------------------YRNMSEDLIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMW 681 (1094)
Q Consensus 623 ---------------------~~~~k~D~ialpdf~~gaMEnwGLityre~~lL~d~~~ss~~~k~~va~viahElahqW 681 (1094)
|+.+| |+|++|+|++|||||||+++|++..+|.++..++....++++.||+||+||||
T Consensus 241 ~~~~~~~~~~~~~~e~~fg~~y~l~~-~~V~v~~f~~GaMEN~Gl~tf~~~~ll~~~~~at~~~~~~~~~viaHElaHqW 319 (859)
T COG0308 241 KYALDETKRSIEFYEEYFGLPYALPI-DIVAVPDFSAGAMENWGLVTFREKYLLADPETATDSDYENVEEVIAHELAHQW 319 (859)
T ss_pred hhhHHHHHHHhhhHHHhcCCCCCCcc-cEEeccCCCCccccccceeEEeeeEEeeCcccchhHHHHHHHHHHHHHHhhhc
Confidence 33345 89999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhHHHHHhcccchhhhhhhhhcccCc-hhHH--HHHHHHHHHHhhhc
Q psy13037 682 FGDLVTMGWWNDLWLNEGFASYMQYKALAKVEP-TWEV--LYIRCLLKDKLSEE 732 (1094)
Q Consensus 682 fGnlvt~~ww~~lwlnEGfa~y~~~~~~~~~~P-e~~~--~f~~~~l~~~~~~~ 732 (1094)
|||+|||+||+++|||||||+|+++...+.+.| +|.. .|.......++..+
T Consensus 320 fGnlVT~~~W~~lWLnEgfat~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 373 (859)
T COG0308 320 FGNLVTMKWWDDLWLNEGFATFREVLWSEDLGGRAWKRWEDFRTLRTSIALAED 373 (859)
T ss_pred ccceeeccCHHHHHHhhhhHHHHHHHHHHHhcchHHHHHHHHHHHhhhHHHhhc
Confidence 999999999999999999999999999999999 7763 33332222255443
No 15
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=99.97 E-value=8.8e-30 Score=313.16 Aligned_cols=217 Identities=20% Similarity=0.296 Sum_probs=163.2
Q ss_pred CCccccceeEEEEeecCCCcceeEEEEEEEEEeCcccEEEEEeccceeeeeecccCCCCCccccccceecccCceEEEEe
Q psy13037 471 ETTVIPKMYDLYLNPYLGKKLFTGTVKINIEVTNATGYIYLHKSSLTIEETTVFKGEDITPIDLLSTFDYAKNEYWVITF 550 (1094)
Q Consensus 471 P~~v~P~~Y~l~l~p~~~~~~f~G~v~I~~~v~~~t~~i~lh~~~l~I~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 550 (1094)
|....-.||+|.|..+.+...++|.+.|.+++.++...|+||..+|+|.++.+. +.... ...+ ....+.|+|..
T Consensus 4 ~~~~~v~~~~L~l~l~~~~~~v~g~~~i~~~~~~~~~~l~Ld~~~L~I~sV~v~-g~~~~----~~~~-~~~~~~L~I~~ 77 (863)
T TIGR02414 4 PPPFLIEKTHLDFDLHEEETVVRARLTVRRNPDGNGAPLVLDGEELKLLSIAID-GKPLA----AGDY-QLDDETLTIAS 77 (863)
T ss_pred CCCceEEEEEEEEEEeCCCeEEEEEEEEEEecCCCCCcEEEEecCCEEEEEEEC-CEecC----cceE-EEcCCEEEEee
Confidence 344567899999999998889999999999887777889999999999877652 21111 0112 23356777763
Q ss_pred ccccCCceEEEEEEEE--EeeCCCCeeEEEEEEecCCceEEEEEecCCCC------------------------------
Q psy13037 551 KETIDPGSYVLKFKFK--GNFSKKNEGFYESMYMNYKNHKRLIATSKFEP------------------------------ 598 (1094)
Q Consensus 551 ~~~l~~g~y~L~i~f~--g~l~~~~~GfYrs~Y~~~~~~~~~~~~t~~~p------------------------------ 598 (1094)
+ ++.|+|.|.|. +..++++.|+|+|+|. ..|||||
T Consensus 78 ---~-~~~~~l~i~~~~~p~~n~~l~GlY~s~~~---------~~TQ~Ep~gaR~ifpc~DeP~~kAtf~vtI~~p~~~y 144 (863)
T TIGR02414 78 ---V-PESFTLEIETEIHPEENTSLEGLYKSGGN---------FCTQCEAEGFRRITYFPDRPDVMSRYTVTITADKKKY 144 (863)
T ss_pred ---C-CccEEEEEEEEeecccCCCCeEEEEeCCe---------EEEEecCCCCCcCCCCCCCCCCceEEEEEEEECCCcc
Confidence 2 35799999885 5778889999998763 1233333
Q ss_pred -------------------------------ccceeeEEeeeeccC--------Cccchhhhh-----------------
Q psy13037 599 -------------------------------TYLWDVYITMFTSSD--------PSHTLHTWL----------------- 622 (1094)
Q Consensus 599 -------------------------------t~~~~~~~~~f~~~~--------r~~~l~~~~----------------- 622 (1094)
+|++++.+..|...+ +...+++|.
T Consensus 145 ~v~lSNg~~~~~~~~~~g~~~~~f~~t~pmptYLfA~vaGdf~~~~~~~~t~sg~~v~l~iy~~p~~~~~~~~al~~~~~ 224 (863)
T TIGR02414 145 PVLLSNGNKIASGELPDGRHWAEWEDPFPKPSYLFALVAGDLDVLEDTFTTKSGREVALRVYVEEGNKDKCDHAMESLKK 224 (863)
T ss_pred eEEEeCCccccceecCCCeEEEEEeCCCCcChhHheEEEeCCEEEEEEeeccCCCceEEEEEEccCcHHHHHHHHHHHHH
Confidence 333333332222111 111112221
Q ss_pred ------------hcCCCCceEecCCCCccccccccccceeeccccccCCCCchhhhhHHHHhhhhcccccccccccchhh
Q psy13037 623 ------------YRNMSEDLIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMGW 690 (1094)
Q Consensus 623 ------------~~~~k~D~ialpdf~~gaMEnwGLityre~~lL~d~~~ss~~~k~~va~viahElahqWfGnlvt~~w 690 (1094)
||..|+|+|++|||..||||||||++|+|..+|.++..++..++++++.||+||++||||||+|||+|
T Consensus 225 ~L~~~E~~fG~pYPl~k~diVavpdf~~GaMEN~GLi~f~e~~lL~~~~~~td~~~~~i~~VIaHElaHqWfGNlVT~~~ 304 (863)
T TIGR02414 225 AMKWDEEVFGLEYDLDIFMIVAVDDFNMGAMENKGLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTCRD 304 (863)
T ss_pred HHHHHHHHhCCCCChhhccEEecCCCCCccccccceeccccceEEeCCCCCCHHHHHHHHHHHHHHHHHHHhcceeeecc
Confidence 55568999999999999999999999999999999988888889999999999999999999999999
Q ss_pred HHHHHhcccchhhhhh
Q psy13037 691 WNDLWLNEGFASYMQY 706 (1094)
Q Consensus 691 w~~lwlnEGfa~y~~~ 706 (1094)
|+++|||||||+|++.
T Consensus 305 W~~LWLnEGfAty~e~ 320 (863)
T TIGR02414 305 WFQLSLKEGLTVFRDQ 320 (863)
T ss_pred hhhhhhhhhHHHHHHH
Confidence 9999999999999985
No 16
>PRK14015 pepN aminopeptidase N; Provisional
Probab=99.96 E-value=9.1e-29 Score=305.24 Aligned_cols=226 Identities=21% Similarity=0.302 Sum_probs=164.2
Q ss_pred CccccceeEEEEeecCCCcceeEEEEEEEEE-eCcccEEEEEeccceeeeeecccCCCCCccccccceecccCceEEEEe
Q psy13037 472 TTVIPKMYDLYLNPYLGKKLFTGTVKINIEV-TNATGYIYLHKSSLTIEETTVFKGEDITPIDLLSTFDYAKNEYWVITF 550 (1094)
Q Consensus 472 ~~v~P~~Y~l~l~p~~~~~~f~G~v~I~~~v-~~~t~~i~lh~~~l~I~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 550 (1094)
..+.-.||+|.|..+.+....+|.++|.... .++.+.|+||..+|+|.++.+. +..... ..+. ...+.|+|.
T Consensus 17 ~~~~V~h~dL~l~ld~~~~~v~g~~~i~~~~~~~~~~~l~LD~~~L~I~sV~v~-G~~~~~----~~~~-~~~~~L~I~- 89 (875)
T PRK14015 17 PDYLIDTVDLDFDLDPDKTRVTARLQVRRNPDAAHSAPLVLDGEDLELLSLALD-GQPLAP----SAYE-LDEEGLTIE- 89 (875)
T ss_pred CCeEEEEEEEEEEEcCCCcEEEEEEEEEEccCCCCCceEEEEcCCCEEEEEEEC-CEEcCc----cceE-EcCCEEEEe-
Confidence 3466789999999999999999999998866 4566899999999999988652 211110 1122 234678877
Q ss_pred ccccCCceEEEEEEEEE--eeCCCCeeEEEEEEecCCceEEEEEecCCCC------------------------------
Q psy13037 551 KETIDPGSYVLKFKFKG--NFSKKNEGFYESMYMNYKNHKRLIATSKFEP------------------------------ 598 (1094)
Q Consensus 551 ~~~l~~g~y~L~i~f~g--~l~~~~~GfYrs~Y~~~~~~~~~~~~t~~~p------------------------------ 598 (1094)
.+ ++.++|.|.|.| ..++.+.|+|++.+. ..||+||
T Consensus 90 --~l-~~~~~l~I~y~~~P~~n~~l~Gly~s~~~---------~~TQ~Ep~gAR~~fPc~D~P~~KAtf~itI~~p~~~~ 157 (875)
T PRK14015 90 --NL-PDRFTLEIETEIDPEANTALEGLYRSGGM---------FCTQCEAEGFRRITYFLDRPDVLARYTVRIEADKAKY 157 (875)
T ss_pred --cC-CccEEEEEEEEEecCCCCCceeeEEECCE---------EEEeccccCcCCcccCCCCCCCCeeEEEEEEEccccC
Confidence 22 346899998886 567778999997541 2233333
Q ss_pred -------------------------------ccceeeEEeeeeccC--------Cccchhhhh-----------------
Q psy13037 599 -------------------------------TYLWDVYITMFTSSD--------PSHTLHTWL----------------- 622 (1094)
Q Consensus 599 -------------------------------t~~~~~~~~~f~~~~--------r~~~l~~~~----------------- 622 (1094)
+|++++.+..|...+ +...+++|.
T Consensus 158 ~~~lSNG~l~~~~~~~~g~~~~~w~~~~PmpsYL~Al~aGdf~~~~d~~~~~~g~~vpl~iy~~p~~~~~~~~al~~~~~ 237 (875)
T PRK14015 158 PVLLSNGNLVESGELPDGRHWATWEDPFPKPSYLFALVAGDLDVLEDTFTTRSGREVALEIYVEPGNLDKCDHAMDSLKK 237 (875)
T ss_pred eEEecCCccccceeccCCeEEEEEEeCCCcccceEEEEEeCCEEEEEEeeccCCCeEEEEEEEeCCcHHHHHHHHHHHHH
Confidence 333333332222211 111122221
Q ss_pred ------------hcCCCCceEecCCCCccccccccccceeeccccccCCCCchhhhhHHHHhhhhcccccccccccchhh
Q psy13037 623 ------------YRNMSEDLIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMGW 690 (1094)
Q Consensus 623 ------------~~~~k~D~ialpdf~~gaMEnwGLityre~~lL~d~~~ss~~~k~~va~viahElahqWfGnlvt~~w 690 (1094)
|+..|.|+|++|||..||||||||++|++..+|.++..++..++++++.+|+||++||||||+|||+|
T Consensus 238 ~L~~~E~~FG~pYP~~k~diVavp~f~~GaMEN~Gl~~f~~~~lL~~~~~~t~~~~~~i~~vIaHElaHqWFGNlVT~~~ 317 (875)
T PRK14015 238 SMKWDEERFGLEYDLDIFMIVAVDDFNMGAMENKGLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTCRD 317 (875)
T ss_pred HHHHHHHHhCCCCChhhhCEEeCCCCCCcccccccccccccceEecCcccCCHHHHHHHHHHHHHHHHHHHHhCcceecc
Confidence 45568999999999999999999999999999999988888889999999999999999999999999
Q ss_pred HHHHHhcccchhhhhh-hhhcccCchh
Q psy13037 691 WNDLWLNEGFASYMQY-KALAKVEPTW 716 (1094)
Q Consensus 691 w~~lwlnEGfa~y~~~-~~~~~~~Pe~ 716 (1094)
|+++|||||||+|++. +..+...+.+
T Consensus 318 W~dLWLnEGFAty~e~~~~~~~~~~~~ 344 (875)
T PRK14015 318 WFQLSLKEGLTVFRDQEFSADLGSRAV 344 (875)
T ss_pred hhhhhhhhHHHHHHHHHHHHHhhhHHH
Confidence 9999999999999963 3444444444
No 17
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=99.86 E-value=4.4e-21 Score=218.33 Aligned_cols=189 Identities=29% Similarity=0.534 Sum_probs=152.5
Q ss_pred ccCCCCccEEEEeccccHHHHHHhhcCCcccccccccccccccchhhhhhhccCccchhhhHHHHHHHHHcCCccHHHHH
Q psy13037 859 AGNPKGLPVAWDYVKKNWDYLVKRFGLNHRVFGRIIPSVCGKFTTQERLDEVLDARDRSNLLDDAFNLAESQMIEYSTTF 938 (1094)
Q Consensus 859 ~~n~~g~~~~~~y~~~nw~~l~~~l~~~~~~~~~ii~~~~~~~~t~~~~~~l~~f~~R~~lidDa~~la~~g~l~y~~~~ 938 (1094)
+.+..|+ ++++|+.++|..|.+++..++ + +..+|+++++|+++++++|.++++.++
T Consensus 5 N~~~~Gy-yRV~Yd~~~~~~l~~~L~~~~--l---------------------~~~~R~~ll~D~~al~~~g~~~~~~~l 60 (324)
T PF11838_consen 5 NAGQTGY-YRVNYDEENWDALIKQLQSNH--L---------------------SPLDRAQLLDDLFALARAGRLSYSDFL 60 (324)
T ss_dssp SGGGSSS-SEEEECTTHHHHHHHHHHHHG--S----------------------HHHHHHHHHHHHHHHHTTSS-HHHHH
T ss_pred eCCceEE-EEEeCCHHHHHHHHHHHhcCC--C---------------------CHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 3444555 467999999999999886432 1 124899999999999999999999999
Q ss_pred HHHHHH-hhCCCcccHHHHHHhHHHHHHHhccccCcccccccccccccccccchh-hHHHHHHHHHHHhhhcccccc-CC
Q psy13037 939 NLMKYM-SKEDHFVPWTVVYNKLSRLDDKLYSTEGHEDFKLSRLDDKLYSTEGHE-DFKLYIRCLLKDKLSEETWKV-EN 1015 (1094)
Q Consensus 939 ~~~~yl-~~E~~y~pW~~a~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~y~~~l~~~~~~~~~~~~-~~ 1015 (1094)
+++.++ ++|++|.||.+++..|..+.+++... .+... .|++|+++++.|+++++||+. ++
T Consensus 61 ~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~-----------------~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 123 (324)
T PF11838_consen 61 DLLEYLLPNETDYVVWSTALSNLSSLRNRLYAE-----------------DEELQEAFRKFVRRLLEPLYERLGWDPRPG 123 (324)
T ss_dssp HHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC------------------HHHHHHHHHHHHHHHHHHHHH--SSSS--
T ss_pred HHHHHhccCCCchHHHHHHHHHHHHHHHHHHhc-----------------cHHHHHHHHHHHHHHHHHHHHHcCCCCccc
Confidence 999999 99999999999999999999777521 13334 499999999999999999986 45
Q ss_pred ccHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHcCC-C---CCCCChhHHhhHhhhcccccchhHHHHHHHhhcccc
Q psy13037 1016 KSYLEVNLKLVLNDLGCNFGAPSCLKKAADLLKNWFDSG-V---KPEADLRGLVYRYVQALPRRGNELQKKENRLRKENT 1091 (1094)
Q Consensus 1016 ~~~~~~~lr~~i~~~aC~~g~~~c~~~A~~~F~~~~~~~-~---~i~~dlr~~Vyc~~~~~~~~~~~~~~~~~~~~~~~~ 1091 (1094)
+++....+|..|+.+|| |+++|++.|+++|++|+.++ . .||||+|.+|||++++. .+..+|++++++|+++++
T Consensus 124 ~~~~~~~lr~~~~~~a~--~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~-g~~~~~~~l~~~~~~~~~ 200 (324)
T PF11838_consen 124 EDHNDRLLRALLLSLAC--GDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRN-GDEEEWDFLWELYKNSTS 200 (324)
T ss_dssp SCHHHHHHHHHHHHHHH--T-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS---HHHHHHHHHHHHTTST
T ss_pred ccHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHH-hhHhhHHHHHHHHhccCC
Confidence 88999999999999999 99999999999999999873 3 68999999999999998 333339999999998764
No 18
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=99.82 E-value=6e-24 Score=241.82 Aligned_cols=295 Identities=28% Similarity=0.557 Sum_probs=235.0
Q ss_pred eeCCCCeeEEEEEEecCCceEEEEEecCCCCccceeeEEeeeeccCCccchhhhhhcCCCCceEecCCCCcccccccccc
Q psy13037 568 NFSKKNEGFYESMYMNYKNHKRLIATSKFEPTYLWDVYITMFTSSDPSHTLHTWLYRNMSEDLIAIPDFVSGAMEHWGLV 647 (1094)
Q Consensus 568 ~l~~~~~GfYrs~Y~~~~~~~~~~~~t~~~pt~~~~~~~~~f~~~~r~~~l~~~~~~~~k~D~ialpdf~~gaMEnwGLi 647 (1094)
.+|.+..||||..| +.++|.+++..++- ..++..+|.++++ |++++. +.|.+
T Consensus 3 ~~N~~~~GyyRV~Y-d~~~~~~l~~~L~~----------~~l~~~~R~~ll~---------D~~al~--------~~g~~ 54 (324)
T PF11838_consen 3 KLNAGQTGYYRVNY-DEENWDALIKQLQS----------NHLSPLDRAQLLD---------DLFALA--------RAGRL 54 (324)
T ss_dssp EESGGGSSSSEEEE-CTTHHHHHHHHHHH----------HGS-HHHHHHHHH---------HHHHHH--------HTTSS
T ss_pred EEeCCceEEEEEeC-CHHHHHHHHHHHhc----------CCCCHHHHHHHHH---------HHHHHH--------HcCCC
Confidence 36778899999888 44577777654322 1256778999999 999999 99999
Q ss_pred ceeeccccccCCCCchhhhhHHHHhh-hhcccc-cccccccchhhHHHHHhcccchhhhh-hhhhcccCchhHHHHHHHH
Q psy13037 648 TFREAAVLFKKGSSSIVNKKRVAMTT-SHELAH-MWFGDLVTMGWWNDLWLNEGFASYMQ-YKALAKVEPTWEVLYIRCL 724 (1094)
Q Consensus 648 tyre~~lL~d~~~ss~~~k~~va~vi-ahElah-qWfGnlvt~~ww~~lwlnEGfa~y~~-~~~~~~~~Pe~~~~f~~~~ 724 (1094)
.|.+.+.|..+ + ..|..+ +|...+-.+..+...+..++ +.+.. + ..|+..+
T Consensus 55 ~~~~~l~l~~~--------------~~~~E~~~~vw~~~~~~l~~l~~~l~~~~-~~~~~~~-----------~~~~~~l 108 (324)
T PF11838_consen 55 SYSDFLDLLEY--------------LLPNETDYVVWSTALSNLSSLRNRLYAED-EELQEAF-----------RKFVRRL 108 (324)
T ss_dssp -HHHHHHHHGG--------------G-GT--SHHHHHHHHHHHHHHHHHHCSC--HHHHHHH-----------HHHHHHH
T ss_pred CHHHHHHHHHH--------------hccCCCchHHHHHHHHHHHHHHHHHHhcc-HHHHHHH-----------HHHHHHH
Confidence 99999999998 7 899999 99999999999986655222 23333 5 6789999
Q ss_pred HHHHhhhcccccc-ccchhhHhHHhhhhcccccCCChhhHHHHHHHHHHHhcC-CC---CCcchHhHHHhhhcccccchh
Q psy13037 725 LKDKLSEETWKVE-NKSYLEVNLKLVLNDLGCNFGAPSCLKKAADLLKNWFDS-GV---KPEADLRGLVYRYGMENVGEE 799 (1094)
Q Consensus 725 l~~~~~~~~~~~~-~~s~~~~~lr~~~~~~a~~~g~~~~~~~a~~~f~~~~~~-~~---~~~~~l~~~v~~~~~~~~~~~ 799 (1094)
+.+.++.++++.. ++++....+|..+...+| |++.|++.+.++|+.|+.+ .. .+++++|..+||.++++|+.+
T Consensus 109 ~~~~~~~l~~~~~~~~~~~~~~lr~~~~~~a~--~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~ 186 (324)
T PF11838_consen 109 LEPLYERLGWDPRPGEDHNDRLLRALLLSLAC--GDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEE 186 (324)
T ss_dssp HHHHHHH--SSSS--SCHHHHHHHHHHHHHHH--T-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HH
T ss_pred HHHHHHHcCCCCcccccHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHh
Confidence 9999999999874 477889999999999999 9999999999999999986 33 789999999999999999999
Q ss_pred HHHHHHHHHhhcCCcccceeeeccccccccCceeeeeeecccCCccccceeeEEEEEeec-cCCCCccEEEEeccccHHH
Q psy13037 800 EWKKMWAKFREESNPQEQIKMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQDYFTVIVMVA-GNPKGLPVAWDYVKKNWDY 878 (1094)
Q Consensus 800 ~~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~l~~~L~~~~~~~~~~~qd~~~~~~~~~-~n~~g~~~~~~y~~~nw~~ 878 (1094)
.|+.+++.|.++....++..++.+|+|+++++.++++|...++++.++.||...++..+. .++.|+..+|+|..+||+.
T Consensus 187 ~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~n~~~ 266 (324)
T PF11838_consen 187 EWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKENWDA 266 (324)
T ss_dssp HHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHHCHHH
T ss_pred hHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH
Confidence 999999999998888899999999999999999999998888765588898777766666 8889999999999999999
Q ss_pred HHHhhcCCcccccccccccccccchhhhhhhccCccchhh
Q psy13037 879 LVKRFGLNHRVFGRIIPSVCGKFTTQERLDEVLDARDRSN 918 (1094)
Q Consensus 879 l~~~l~~~~~~~~~ii~~~~~~~~t~~~~~~l~~f~~R~~ 918 (1094)
|.++++.+...+..++..+.+.+++.++++++++|++..+
T Consensus 267 i~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~f~~~~~ 306 (324)
T PF11838_consen 267 IIKKFGTNSSALSRVIKSFAGNFSTEEQLDELEEFFEDKP 306 (324)
T ss_dssp HHCHC-TTSHCCHHHHHCCCTT--SHHHHHHHHHHHHHHC
T ss_pred HHHHhcCCChHHHHHHHHHhccCCCHHHHHHHHHHHhhCc
Confidence 9999987655677888888899999999999999986554
No 19
>KOG1047|consensus
Probab=99.56 E-value=7.9e-14 Score=154.94 Aligned_cols=165 Identities=23% Similarity=0.339 Sum_probs=99.8
Q ss_pred CCceEecC-CCCccccccccccceeeccccccCCCCchhhhhHHHHhhhhcccccccccccchhhHHHHHhcccchhhhh
Q psy13037 627 SEDLIAIP-DFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMGWWNDLWLNEGFASYMQ 705 (1094)
Q Consensus 627 k~D~ialp-df~~gaMEnwGLityre~~lL~d~~~ss~~~k~~va~viahElahqWfGnlvt~~ww~~lwlnEGfa~y~~ 705 (1094)
..|++.+| .|..|||||--|....-+. |-.. ...+.|||||+||-|||||||-.-|.+.||||||+.|.|
T Consensus 254 ryDllvlPpSFP~gGMENPcltF~TpTl-laGD--------rsl~~vIaHEIAHSWtGNlVTN~sWehfWLNEGfTvylE 324 (613)
T KOG1047|consen 254 RYDLLVLPPSFPFGGMENPCLTFVTPTL-LAGD--------RSLVDVIAHEIAHSWTGNLVTNASWEHFWLNEGFTVYLE 324 (613)
T ss_pred cceEEEecCCCCcccccCcceeeecchh-hcCC--------cchhhHHHHHhhhhhcccccccCccchhhhcccchhhhh
Confidence 36988875 5999999999776555443 3332 234778999999999999999999999999999999999
Q ss_pred hhhhcccCchhHHHHHH----HHHHHHhhhccccccccchhhHhHHhhhhcccccCCChhhHHHH--HHHHHHHhcCCCC
Q psy13037 706 YKALAKVEPTWEVLYIR----CLLKDKLSEETWKVENKSYLEVNLKLVLNDLGCNFGAPSCLKKA--ADLLKNWFDSGVK 779 (1094)
Q Consensus 706 ~~~~~~~~Pe~~~~f~~----~~l~~~~~~~~~~~~~~s~~~~~lr~~~~~~a~~~g~~~~~~~a--~~~f~~~~~~~~~ 779 (1094)
-.++..++-+-..+|.. ..+++.++.+|-+.. -+-+..-+.. .+.--.+..-.|.++. ...+.+-++++..
T Consensus 325 rrI~g~~~g~~~~~f~a~~gw~~L~~~~d~~g~~~~-~tkLv~kl~~--~dPDdafs~VpYeKG~~ll~~Le~~lG~~~~ 401 (613)
T KOG1047|consen 325 RRIVGRLYGEAYRQFEALIGWRELRPSMDLFGETSE-FTKLVVKLEN--VDPDDAFSQVPYEKGFALLFYLEQLLGDPTR 401 (613)
T ss_pred hhhhhhhcchhHHHHHHhcChhhhhhHHHhcCCCcc-cchhhhhccC--CChHHhhhcCchhhhhHHHHHHHHHhCChhh
Confidence 98887777653322221 125555555544321 0011111100 0000011112233332 2334445555445
Q ss_pred CcchHhHHHhhhcccccchhHHHH
Q psy13037 780 PEADLRGLVYRYGMENVGEEEWKK 803 (1094)
Q Consensus 780 ~~~~l~~~v~~~~~~~~~~~~~~~ 803 (1094)
..+.||..+-....+.....+|..
T Consensus 402 Fd~FLr~Yv~kfa~ksI~t~dfld 425 (613)
T KOG1047|consen 402 FDPFLRAYVHKFAFKSILTQDFLD 425 (613)
T ss_pred HHHHHHHHHHHhccceecHHHHHH
Confidence 566788877777776655555543
No 20
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=99.47 E-value=2.2e-12 Score=143.47 Aligned_cols=312 Identities=17% Similarity=0.173 Sum_probs=196.4
Q ss_pred CCccceeeEEEEEecCCCcEEeecCCccccccCCCCCCeEEEEEcCCCCCccceeeeeeecceeeccccCCCCeeEEEEE
Q psy13037 49 PVRTHETWVRRSFDGGGGASGASEGPTKKSTDDQPGVNQTTVEFATTVPMSTYLVCFIVCDFDHLPSQDAKQGFPIKVYA 128 (1094)
Q Consensus 49 p~~~~~~~~~i~i~~p~~~~a~Sng~~~~~~~~~~~~~~~~~~F~~t~pms~y~va~~vg~f~~~~~~~~~~~~~i~v~~ 128 (1094)
|...+...+.+++.-|+ |.+.+..+.+... .....-..|+.-.+-|. -+|.|........ |.+.++-.
T Consensus 107 ~~G~e~~~~~~~~~~p~-wriAT~L~~~~~~----~~~F~aa~~~~lvDSPv-----e~g~~~~~~~e~~--g~ph~~~~ 174 (558)
T COG3975 107 PEGYETRPLELTVIPPE-WRIATALPPVATG----RFVFYAASYEELVDSPV-----EAGLFELLDFEVT--GAPHTIAL 174 (558)
T ss_pred cCcceeeeeEEEecCcc-ceeeecCCccccC----CceeecccHHHhcCChh-----hccccceeeeecc--CCceeEEE
Confidence 33444444456665555 8877776654442 11122334555444442 2455555555553 44444444
Q ss_pred cCCc-hhhHHHHHHHHHHHHHHHHHHhCCCCCCCcccEEEc-CCCCCcccccccceeeecceeeecCCCCchhh-hhhhh
Q psy13037 129 REGQ-LEHMEFAQKTAIAAINFYVEYFNISYPLPKLDLIAI-PDFVSGAMEHWGLVTFREAAVLFKKGSSSIVN-KKRVA 205 (1094)
Q Consensus 129 ~~~~-~~~~~~~l~~~~~~l~~~e~~fg~~yP~~k~d~V~v-p~~~~g~me~~gli~~~e~~ll~~~~~~~~~~-~~~~~ 205 (1094)
+... ..+.+...+.++++++.-.+.|| +-||.+|.+++. -+-.+||||+-- ++.+.++...-+..+ .+...
T Consensus 175 ~g~~p~~d~~~~~~~~k~ii~~~~~vFg-~~~~~~Y~Fl~~~s~q~~GGlEH~~-----St~l~~~r~~~~~~~ky~~~l 248 (558)
T COG3975 175 RGELPNFDKERLASDTKKIIEAEIKVFG-SAPFDKYVFLLHLSDQIYGGLEHRR-----STALIYDRFGFTDQDKYQDLL 248 (558)
T ss_pred eeccccccHHHHHHHHHHHHHHHHHHhc-CCCccceEEEEEecCCCCCCceecc-----ccccccccccccchhHHHHHH
Confidence 3332 23567777889999999999999 899999988765 455678999763 333333332111222 36667
Q ss_pred hhHhHHHHHHhhcCccccCCC-----------chhhHhHHHHHHHHHHHHhhcCc--chhHHHHHHHHHHHHhhhccccC
Q psy13037 206 MTTSHELAHMWFGDLVTMGWW-----------NDLWLNEGFASYMQYKALAKVEP--TWEVDTMFLTDMLHSTLQLDQTL 272 (1094)
Q Consensus 206 ~~iaHElaHqWfGnlVt~~~w-----------~d~WL~EGfA~y~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~~ 272 (1094)
.+++||++|-|.+..+.|..- .-+|+.|||++|+..++.-+..- ...+.+ .+.+.+......-. .
T Consensus 249 ~llsHEyfH~WNvKrIrpa~l~p~~~d~en~t~~lW~~EG~T~Yy~~ll~lRsgl~~~~~~l~-~la~tl~~~~~~~g-R 326 (558)
T COG3975 249 GLLSHEYFHAWNVKRIRPAALEPFNLDKENYTPLLWFSEGFTSYYDRLLALRSGLISLETYLN-YLAKTLARYLNTPG-R 326 (558)
T ss_pred HHHHHHHHHhccceeccccccCCccccccCCCcceeeecCchHHHHHHHHHHhccCcHHHHHH-HHHHHHHHHhcCCc-e
Confidence 899999999999999888653 35999999999999888766531 111111 11222222221111 1
Q ss_pred CCCCeee-----ccCCccccccccccch--hchHHHHHHHHHHHh-----CHHHHHHHHHHHHHHhcC--CCCCHHHHHH
Q psy13037 273 SSHPIVQ-----TVSNPDQITEIFDVIS--YQKGSSVIRMLENMM-----GEESFAHGVTSYLNEFQF--KNAETNDLWS 338 (1094)
Q Consensus 273 ~~~pl~~-----~~~~~~~~~~~f~~i~--Y~Kg~~vl~mL~~~l-----G~e~F~~~l~~yl~~~~~--~~~~~~df~~ 338 (1094)
..+|+.. .+.....-...-+.+. |.||++|--+|+..| |+..+...|+.+.+.+.. +..+++++..
T Consensus 327 l~~~laEsS~~awik~yr~d~ns~n~~~sYY~kG~lv~L~lDl~iR~r~~~~~SLDdvmram~~~~~~~~~~~t~e~v~a 406 (558)
T COG3975 327 LRQSLAESSFDAWIKYYRPDENSPNRLVSYYQKGALVALLLDLLIRERGGGQKSLDDVMRALWKEFGRAERGYTPEDVQA 406 (558)
T ss_pred ecccccccccchhHHhhcccccccccchhhhhchhHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCcCccCCCHHHHHH
Confidence 1222221 1111111111222333 999999999999999 455688888888877665 7789999999
Q ss_pred HHHHhcCCCCHHHHHHHhhcCCCcceEEEEEeCCeEEEEEEee
Q psy13037 339 HLQKFANNMSVTSVMDTYTRQMGFPIITVKKSGDQVTFTQQRY 381 (1094)
Q Consensus 339 ~l~~~~~~~~l~~~~~~W~~~~G~P~l~v~~~~~~~~i~Q~rf 381 (1094)
.+++++| .++.+||++.+.+..-|.+.---..-.++++++++
T Consensus 407 v~~~~tg-~dl~~f~~~~i~~~~~~~l~~~l~~~gL~~~~~~~ 448 (558)
T COG3975 407 VLENVTG-LDLATFFDEYIEGTEPPPLNPLLERFGLTFTPKPR 448 (558)
T ss_pred HHHhhcc-ccHHHHHHHHhhcCCCCChhhhhhhcceEEEecCC
Confidence 9999999 99999999999999887775433335677877753
No 21
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=99.07 E-value=2.8e-10 Score=110.15 Aligned_cols=107 Identities=25% Similarity=0.445 Sum_probs=74.4
Q ss_pred hhhhhhhHhHHHHHHhhcCccccCCCchhhHhHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHhhhccccCCCCCeeec
Q psy13037 201 KKRVAMTTSHELAHMWFGDLVTMGWWNDLWLNEGFASYMQYKALAKVEPTWEVDTMFLTDMLHSTLQLDQTLSSHPIVQT 280 (1094)
Q Consensus 201 ~~~~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~~~ 280 (1094)
...+..+++||++|+|+++.++.......|++||+|+|++.. ... .....+...+..+...+..++...
T Consensus 22 ~~~~~~~l~HE~~H~~~~~~~~~~~~~~~W~~EG~A~y~~~~----~~~-------~~~~~~~~~~~~~~~~~~~~l~~~ 90 (128)
T PF13485_consen 22 EDWLDRVLAHELAHQWFGNYFGGDDNAPRWFNEGLAEYVEGR----IED-------EFDEDLKQAIESGSLPPLEPLNSS 90 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccCchHHHHHHHHHHhcC----ccc-------hhHHHHHHHHHcCCCCChHHHhcc
Confidence 344568999999999999999877778899999999999932 111 112223333333333333333221
Q ss_pred cCCccccccccccchhchHHHHHHHHHHHhCHHHHHHHHHHH
Q psy13037 281 VSNPDQITEIFDVISYQKGSSVIRMLENMMGEESFAHGVTSY 322 (1094)
Q Consensus 281 ~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~e~F~~~l~~y 322 (1094)
.. ....+....|.+|.+++++|....|++.|++.|++|
T Consensus 91 ~~----~~~~~~~~~Y~~~~~~~~~L~~~~G~~~~~~~l~~~ 128 (128)
T PF13485_consen 91 FD----FSWEDDSLAYYQGYLFVRFLEEKYGREKFKAFLREY 128 (128)
T ss_pred cc----ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 11 134455678999999999999999999999999875
No 22
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=97.58 E-value=0.0027 Score=70.78 Aligned_cols=144 Identities=17% Similarity=0.161 Sum_probs=89.4
Q ss_pred hhhhhhhHhHHHHHHhhc--CccccC--CCchhhHhHHHHHHHHHHHHhhcCcchh-HHHHHHHHHHHHhhhccccCCCC
Q psy13037 201 KKRVAMTTSHELAHMWFG--DLVTMG--WWNDLWLNEGFASYMQYKALAKVEPTWE-VDTMFLTDMLHSTLQLDQTLSSH 275 (1094)
Q Consensus 201 ~~~~~~~iaHElaHqWfG--nlVt~~--~w~d~WL~EGfA~y~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~ 275 (1094)
...+..++|||+-|+=-- +.|... .-.|+||+||+|.-+|.++..+..+... ..+....... .........
T Consensus 136 ~~~~~sTlAHEfQHmInfy~~~v~~g~~~~~dtWLnE~lS~~aEdl~s~~~~~~~n~i~d~R~~~y~----~~~~~~~~~ 211 (366)
T PF10460_consen 136 PDTVYSTLAHEFQHMINFYQRGVLHGKQYAMDTWLNEMLSMSAEDLYSSKIDPGYNNIRDSRIPYYN----NYTSGNYNC 211 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHhcCCCcccCccccccHHHHh----hccccCCCc
Confidence 345678999999997532 334433 2359999999999999999888753211 1111111111 110111122
Q ss_pred CeeeccCCccccccccccchhchHHHHHHHHHHHhCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC-CCCHHHHHH
Q psy13037 276 PIVQTVSNPDQITEIFDVISYQKGSSVIRMLENMMGEESFAHGVTSYLNEFQFKNAETNDLWSHLQKFAN-NMSVTSVMD 354 (1094)
Q Consensus 276 pl~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~e~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~~-~~~l~~~~~ 354 (1094)
.+... .... -....|..+.+++.-|.+..|.+.+++.|.. ....+.++..+.+.+..+ ..++.++|.
T Consensus 212 ~l~~w-~~~g-----~~l~sYs~s~~Fg~~L~rQ~G~~~~~~~l~~------~~~tds~avl~aa~~~~~~~~sf~~~l~ 279 (366)
T PF10460_consen 212 SLTAW-SSFG-----DSLASYSSSYSFGAYLYRQYGGDFYKKLLTN------SSSTDSEAVLDAAIKQAGPGNSFGELLR 279 (366)
T ss_pred ceeec-CCCc-----cccccchhHHHHHHHHHHHcChHHHHHHHhc------CCCCcHHHHHHHHHHhhcCCCCHHHHHH
Confidence 23221 1111 1234699999999999999999987776651 234677887777655443 278999999
Q ss_pred HhhcCC
Q psy13037 355 TYTRQM 360 (1094)
Q Consensus 355 ~W~~~~ 360 (1094)
+|...-
T Consensus 280 ~w~~A~ 285 (366)
T PF10460_consen 280 RWGVAL 285 (366)
T ss_pred HHHHHH
Confidence 998876
No 23
>PF05299 Peptidase_M61: M61 glycyl aminopeptidase; InterPro: IPR007963 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M61 (glycyl aminopeptidase family, clan MA(E)).The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example is glycyl aminopeptidase from Sphingomonas capsulata.
Probab=97.12 E-value=0.00029 Score=65.84 Aligned_cols=45 Identities=29% Similarity=0.395 Sum_probs=38.2
Q ss_pred hhhhHhHHHHHHhhcCccccCCC-----------chhhHhHHHHHHHHHHHHhhcC
Q psy13037 204 VAMTTSHELAHMWFGDLVTMGWW-----------NDLWLNEGFASYMQYKALAKVE 248 (1094)
Q Consensus 204 ~~~~iaHElaHqWfGnlVt~~~w-----------~d~WL~EGfA~y~~~~~~~~~~ 248 (1094)
...++|||+.|.|.+..+.|+.- +.+|+.|||++|++.+++.+..
T Consensus 4 ~l~l~sHEffH~WnvkrirP~~l~p~dy~~~~~t~~LWv~EG~T~Y~~~l~l~RaG 59 (122)
T PF05299_consen 4 FLGLLSHEFFHSWNVKRIRPAELGPFDYEKPNYTELLWVYEGFTSYYGDLLLVRAG 59 (122)
T ss_pred hhhhhhhhccccccceEeccccccCCCCCCCCCCCCEeeeeCcHHHHHHHHHHHcC
Confidence 45689999999999888887653 4689999999999999988764
No 24
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=96.99 E-value=0.00013 Score=70.14 Aligned_cols=43 Identities=33% Similarity=0.601 Sum_probs=37.5
Q ss_pred hhhhHHHHhhhhcccccccccccchhhHHHHHhcccchhhhhh
Q psy13037 664 VNKKRVAMTTSHELAHMWFGDLVTMGWWNDLWLNEGFASYMQY 706 (1094)
Q Consensus 664 ~~k~~va~viahElahqWfGnlvt~~ww~~lwlnEGfa~y~~~ 706 (1094)
.....+..+++||++|+|+++.+........|++||+|.|++.
T Consensus 20 ~~~~~~~~~l~HE~~H~~~~~~~~~~~~~~~W~~EG~A~y~~~ 62 (128)
T PF13485_consen 20 SDEDWLDRVLAHELAHQWFGNYFGGDDNAPRWFNEGLAEYVEG 62 (128)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCccCchHHHHHHHHHHhc
Confidence 4556677999999999999999986677789999999999994
No 25
>KOG1932|consensus
Probab=95.51 E-value=0.13 Score=63.79 Aligned_cols=105 Identities=21% Similarity=0.241 Sum_probs=70.1
Q ss_pred ceeEEEEe-ecCCCcceeEEEEEEEEE-eCcccEEEEEeccceeeeeecccC-CCC-----Ccccc--------ccc---
Q psy13037 477 KMYDLYLN-PYLGKKLFTGTVKINIEV-TNATGYIYLHKSSLTIEETTVFKG-EDI-----TPIDL--------LST--- 537 (1094)
Q Consensus 477 ~~Y~l~l~-p~~~~~~f~G~v~I~~~v-~~~t~~i~lh~~~l~I~~~~~~~~-~~~-----~~~~~--------~~~--- 537 (1094)
.|=.+.|. .|+....+.|.+.|.|.- ..+-+.|+||++++.|.++.+.+. ... ..... .+.
T Consensus 28 ~hQkv~l~~Idf~~rsi~G~tEitI~P~~~nL~~i~l~~kql~I~sV~V~~~~~~f~y~d~~q~~~~~~~~~~~l~~~s~ 107 (1180)
T KOG1932|consen 28 LHQKVSLSNIDFSKRSIIGFTEITIQPLVPNLSVIVLHSKQLRILSVLVNGSPTKFIYNDPTQNDCTDEIWQRVLDPASQ 107 (1180)
T ss_pred eEEEEEeecccceeeEEEeEEEEEEecCCCCcceEEEeccccEEEEEEecCcccceeecchhhhhhhhhhhhhhhhhhhh
Confidence 57778888 788899999999999965 455589999999999998876432 110 00000 000
Q ss_pred -------ee--cccCceEEEEeccccCC-c----eEEEEEEEEEeeCCCCeeEEEEEE
Q psy13037 538 -------FD--YAKNEYWVITFKETIDP-G----SYVLKFKFKGNFSKKNEGFYESMY 581 (1094)
Q Consensus 538 -------~~--~~~~~~l~i~~~~~l~~-g----~y~L~i~f~g~l~~~~~GfYrs~Y 581 (1094)
+. ...++.|.|.+++++++ | .-+|.|.|+-.=....--|++-.|
T Consensus 108 ~~~~~~~y~~l~~~~g~L~I~ipk~~~~~~ee~~~lr~~I~~s~~~pk~gi~Fv~~~~ 165 (1180)
T KOG1932|consen 108 SHFLAVQYEDLDEDNGELLIKIPKESKKVGEELKALRLRIDFSVREPKDGIKFVRPNY 165 (1180)
T ss_pred hhhHHHhhhccccCCCeEEEEcCchhhhhhhhccceEEEEEEEccCCCCCeEEeccCc
Confidence 11 12358899999988553 2 266778887665555556777544
No 26
>PF07607 DUF1570: Protein of unknown function (DUF1570); InterPro: IPR011464 This entry represents hypothetical proteins confined to bacteria.
Probab=94.39 E-value=0.024 Score=53.77 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=28.9
Q ss_pred hhHhHHHHHHhhcCc-c-ccCCCchhhHhHHHHHHHHHHHH
Q psy13037 206 MTTSHELAHMWFGDL-V-TMGWWNDLWLNEGFASYMQYKAL 244 (1094)
Q Consensus 206 ~~iaHElaHqWfGnl-V-t~~~w~d~WL~EGfA~y~~~~~~ 244 (1094)
.+++||-+||=.-|. | ..-.-.-.|+.||||+|++-.-.
T Consensus 3 ~T~~HEa~HQl~~N~Gl~~r~~~~P~Wv~EGlA~yFE~~~~ 43 (128)
T PF07607_consen 3 ATIAHEATHQLAFNTGLHPRLADWPRWVSEGLATYFETPGM 43 (128)
T ss_pred hHHHHHHHHHHHHHccccccCCCCchHHHHhHHHHcCCCcc
Confidence 579999999998764 1 11112248999999999997665
No 27
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=92.87 E-value=2 Score=44.70 Aligned_cols=169 Identities=18% Similarity=0.256 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHhCCC-CCCCcccEEE--cCCCCCcccccc------cceeeecceeeecCCCCchhhhhhhhhhH
Q psy13037 138 FAQKTAIAAINFYVEYFNIS-YPLPKLDLIA--IPDFVSGAMEHW------GLVTFREAAVLFKKGSSSIVNKKRVAMTT 208 (1094)
Q Consensus 138 ~~l~~~~~~l~~~e~~fg~~-yP~~k~d~V~--vp~~~~g~me~~------gli~~~e~~ll~~~~~~~~~~~~~~~~~i 208 (1094)
.+...+.++..+..+.|-.+ .+-+..+.|. +.++ +|.... .-|.++...+--.+. ....+.++..+|
T Consensus 25 ~a~~~L~~a~~~V~~~ly~~~~~~~~v~~Vt~~~~~~--~gVA~t~gd~~~~~I~~S~~~i~~~~~--~~~~~~Ei~Gvl 100 (205)
T PF04450_consen 25 DAEQVLRDASRFVWRLLYQSPADRKPVRSVTLILDDM--DGVAYTSGDDDHKEIHFSARYIAKYPA--DGDVRDEIIGVL 100 (205)
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCcccEEEEEEECC--CeeEEEecCCCccEEEEeHHHHhhccc--ccchHHHHHHHH
Confidence 34455666677777776533 2223333332 2332 222211 244554443321111 123456788999
Q ss_pred hHHHHHHhhcCccccCCCchhhHhHHHHHHHHHHHHhhcCc-chhHHHHHHHHHHHHhhhccccCCCCCeeeccCCcccc
Q psy13037 209 SHELAHMWFGDLVTMGWWNDLWLNEGFASYMQYKALAKVEP-TWEVDTMFLTDMLHSTLQLDQTLSSHPIVQTVSNPDQI 287 (1094)
Q Consensus 209 aHElaHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~pl~~~~~~~~~~ 287 (1094)
.||++|-|=.+--.. .--||.||+|.|+...+- ..| .| ..|...
T Consensus 101 ~HE~~H~~Q~~~~~~---~P~~liEGIADyVRl~aG--~~~~~w----------------------~~p~~~-------- 145 (205)
T PF04450_consen 101 YHEMVHCWQWDGRGT---APGGLIEGIADYVRLKAG--YAPPHW----------------------KRPGGG-------- 145 (205)
T ss_pred HHHHHHHhhcCCCCC---CChhheecHHHHHHHHcC--CCCccc----------------------cCCCCC--------
Confidence 999999665443222 245999999999975431 111 10 011110
Q ss_pred ccccccchhchHHHHHHHHHH-HhCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCHHHHHHH
Q psy13037 288 TEIFDVISYQKGSSVIRMLEN-MMGEESFAHGVTSYLNEFQFKNAETNDLWSHLQKFANNMSVTSVMDT 355 (1094)
Q Consensus 288 ~~~f~~i~Y~Kg~~vl~mL~~-~lG~e~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~~~~~l~~~~~~ 355 (1094)
..++ -.|.-.|.+|.-|+. ..|+. |.+-|+.=+++..+ +.+++|+.+ .| .+++++.+.
T Consensus 146 -~~wd-~gY~~TA~FL~wle~~~~~~g-fV~~LN~~m~~~~y---~~~~~~~~l---~G-~~v~~LW~e 204 (205)
T PF04450_consen 146 -DSWD-DGYRTTARFLDWLEDNRYGKG-FVRRLNEAMRRDKY---SSDDFWKEL---LG-KPVDELWAE 204 (205)
T ss_pred -CCcc-cccHHHHHHHHHHHhcccCcc-HHHHHHHHHhhCCC---CcHhHHHHH---HC-cCHHHHHhh
Confidence 1122 358889999999999 66654 55556555555444 567777655 57 888888654
No 28
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=91.18 E-value=0.65 Score=48.26 Aligned_cols=100 Identities=16% Similarity=0.130 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCcccEEEcCCCCCc-----ccccccceeeecceeee-cCCCCchhhhhhhhhhHhHHHHHH
Q psy13037 142 TAIAAINFYVEYFNISYPLPKLDLIAIPDFVSG-----AMEHWGLVTFREAAVLF-KKGSSSIVNKKRVAMTTSHELAHM 215 (1094)
Q Consensus 142 ~~~~~l~~~e~~fg~~yP~~k~d~V~vp~~~~g-----~me~~gli~~~e~~ll~-~~~~~~~~~~~~~~~~iaHElaHq 215 (1094)
.+.+++....+.+ |-+.+++.++|.-+.+ .+...|...+....+++ -+. .....++..++|||+.|.
T Consensus 4 ~i~~~~~~~~~~~----~~~~i~v~i~p~~~~~~~~~~~~g~~g~~~~~~~i~l~~~~~---~~~~~~l~~~iaHE~hH~ 76 (195)
T PF10026_consen 4 IIEEALEKSIELL----PGPDIPVFIFPADPENPFLIPELGGKGGGAIPGYIFLFLLPN---DYSLEELPALIAHEYHHN 76 (195)
T ss_pred HHHHHHHHHHHHc----CCCCCCEEEEeccCCCcccccccCcccccCCCCEEEEEecCC---cccHHHHHHHHHHHHHHH
Confidence 3455555555555 3457777655533222 12233444444444444 232 223447888999999998
Q ss_pred hhcCccc----cCCCchhhHhHHHHHHHHHHHHhhcC
Q psy13037 216 WFGDLVT----MGWWNDLWLNEGFASYMQYKALAKVE 248 (1094)
Q Consensus 216 WfGnlVt----~~~w~d~WL~EGfA~y~~~~~~~~~~ 248 (1094)
+--..+. ...--|.-+.||+|.+++.....+..
T Consensus 77 ~r~~~~~~~~~~~TLld~~I~EGlAe~f~~~~~g~~~ 113 (195)
T PF10026_consen 77 CRYEQIGWDPEDTTLLDSLIMEGLAEYFAEELYGEEY 113 (195)
T ss_pred HHHhccCCCCCCCCHHHHHHHhhHHHHHHHHHcCCCC
Confidence 6433322 11233677899999999987776655
No 29
>PF07607 DUF1570: Protein of unknown function (DUF1570); InterPro: IPR011464 This entry represents hypothetical proteins confined to bacteria.
Probab=89.10 E-value=0.061 Score=51.05 Aligned_cols=39 Identities=26% Similarity=0.366 Sum_probs=29.7
Q ss_pred HHhhhhcccccccccccchhhHHH--HHhcccchhhhhhhh
Q psy13037 670 AMTTSHELAHMWFGDLVTMGWWND--LWLNEGFASYMQYKA 708 (1094)
Q Consensus 670 a~viahElahqWfGnlvt~~ww~~--lwlnEGfa~y~~~~~ 708 (1094)
+.+|+||-+||-.-|.--..-..+ +|+.||+|+|+|--+
T Consensus 2 ~~T~~HEa~HQl~~N~Gl~~r~~~~P~Wv~EGlA~yFE~~~ 42 (128)
T PF07607_consen 2 IATIAHEATHQLAFNTGLHPRLADWPRWVSEGLATYFETPG 42 (128)
T ss_pred chHHHHHHHHHHHHHccccccCCCCchHHHHhHHHHcCCCc
Confidence 357999999998888654444433 699999999999733
No 30
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=81.69 E-value=0.49 Score=53.19 Aligned_cols=70 Identities=23% Similarity=0.298 Sum_probs=50.5
Q ss_pred cccccceeeccccccCCCCchhhhhHHHHhhhhcccc--cccccccchhh--HHHHHhcccchhhhhhhhhcccCch
Q psy13037 643 HWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAH--MWFGDLVTMGW--WNDLWLNEGFASYMQYKALAKVEPT 715 (1094)
Q Consensus 643 nwGLityre~~lL~d~~~ss~~~k~~va~viahElah--qWfGnlvt~~w--w~~lwlnEGfa~y~~~~~~~~~~Pe 715 (1094)
|.|++.|=.+..++-.+. ...+.+..+||||+-| -+.-+.|.+.- =.++|||||++.-.|.+....+.|.
T Consensus 116 Ne~e~~YiD~~~~~~~~~---~~~~~~~sTlAHEfQHmInfy~~~v~~g~~~~~dtWLnE~lS~~aEdl~s~~~~~~ 189 (366)
T PF10460_consen 116 NESEYFYIDSETLYLGGN---SGPDTVYSTLAHEFQHMINFYQRGVLHGKQYAMDTWLNEMLSMSAEDLYSSKIDPG 189 (366)
T ss_pred cceeEEEEecHHhhccCC---ccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHhcCCCcc
Confidence 888888866655543322 2256688899999999 35555665543 3599999999999999887777654
No 31
>PRK04860 hypothetical protein; Provisional
Probab=78.87 E-value=2.5 Score=42.03 Aligned_cols=72 Identities=15% Similarity=0.167 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCcccEEEcCCCCCcccccccceeeecceeeecCCCCchhhhhhhhhhHhHHHHHHhh
Q psy13037 139 AQKTAIAAINFYVEYFNISYPLPKLDLIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWF 217 (1094)
Q Consensus 139 ~l~~~~~~l~~~e~~fg~~yP~~k~d~V~vp~~~~g~me~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWf 217 (1094)
+...+...+..-+++||.+||.|+..+-.= ...||+. .++...+=++|..-.......+..+|+||+||.|-
T Consensus 5 ~~~~~~~~~~~a~~~f~~~f~~p~~~f~~R--~rtaG~~-----~l~~~~I~~Np~ll~~~~~~~l~~~v~HEl~H~~~ 76 (160)
T PRK04860 5 VMRRLRECLAQANLYFKRTFPEPKVSYTQR--GTSAGTA-----WLQSNEIRLNPVLLLENQQAFIDEVVPHELAHLLV 76 (160)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCEEEEeec--chhhcch-----hHhcCCeeeCHHHHhhCcHHHHHhHHHHHHHHHHH
Confidence 445567778888899998888776544321 1223332 12222233333222223456677899999999874
No 32
>COG4324 Predicted aminopeptidase [General function prediction only]
Probab=76.18 E-value=2.6 Score=44.04 Aligned_cols=41 Identities=32% Similarity=0.257 Sum_probs=32.8
Q ss_pred hhhhhhhHhHHHHHHhhcCccccCCCchhhHhHHHHHHHHHHHHhhc
Q psy13037 201 KKRVAMTTSHELAHMWFGDLVTMGWWNDLWLNEGFASYMQYKALAKV 247 (1094)
Q Consensus 201 ~~~~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~ 247 (1094)
...++.+|-||+|||=|.-. +|.=+||+||++.+...+++.
T Consensus 194 d~~lA~LIFHELAHQk~Y~~------~DtAFNEsFAtaVEt~Gvr~W 234 (376)
T COG4324 194 DTYLASLIFHELAHQKIYVN------NDTAFNESFATAVETSGVRKW 234 (376)
T ss_pred hHHHHHHHHHHHhhheEeec------CcchHhHHHHHHHHHHhHHHH
Confidence 45678899999999976432 367789999999998877664
No 33
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=70.40 E-value=2.1 Score=44.48 Aligned_cols=39 Identities=31% Similarity=0.457 Sum_probs=31.8
Q ss_pred hhhhHHHHhhhhcccc--cccccccchhhHHHHHhcccchhhhhhh
Q psy13037 664 VNKKRVAMTTSHELAH--MWFGDLVTMGWWNDLWLNEGFASYMQYK 707 (1094)
Q Consensus 664 ~~k~~va~viahElah--qWfGnlvt~~ww~~lwlnEGfa~y~~~~ 707 (1094)
..+..|.-||.||++| ||.|.-..+. ||-||.|-|..+.
T Consensus 91 ~~~~Ei~Gvl~HE~~H~~Q~~~~~~~P~-----~liEGIADyVRl~ 131 (205)
T PF04450_consen 91 DVRDEIIGVLYHEMVHCWQWDGRGTAPG-----GLIEGIADYVRLK 131 (205)
T ss_pred chHHHHHHHHHHHHHHHhhcCCCCCCCh-----hheecHHHHHHHH
Confidence 4568899999999999 8888655554 5789999999884
No 34
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=68.75 E-value=4.5 Score=44.97 Aligned_cols=42 Identities=26% Similarity=0.251 Sum_probs=32.4
Q ss_pred hhhhhhhHhHHHHHHhhcCccccCCCchhhHhHHHHHHHHHHHHhhcC
Q psy13037 201 KKRVAMTTSHELAHMWFGDLVTMGWWNDLWLNEGFASYMQYKALAKVE 248 (1094)
Q Consensus 201 ~~~~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~~ 248 (1094)
..+++.+|-||+|||=+.- -+|.=+||+||++.+...+.+..
T Consensus 162 ~~~LA~LIfHELaHq~~Yv------~~dt~FNEsfAtfVe~~G~~~wl 203 (337)
T PF10023_consen 162 DGELARLIFHELAHQTLYV------KGDTAFNESFATFVEREGARRWL 203 (337)
T ss_pred chHHHHHHHHHHhhceeec------CCCchhhHHHHHHHHHHHHHHHH
Confidence 3477899999999995422 13778899999999988776653
No 35
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=67.71 E-value=5.8 Score=41.17 Aligned_cols=73 Identities=16% Similarity=0.151 Sum_probs=43.8
Q ss_pred cccccceeeccccccCCCCchhhhhHHHHhhhhcccc-ccccccc---chhhHHHHHhcccchhhhhhhhhcccC-chhH
Q psy13037 643 HWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAH-MWFGDLV---TMGWWNDLWLNEGFASYMQYKALAKVE-PTWE 717 (1094)
Q Consensus 643 nwGLityre~~lL~d~~~ss~~~k~~va~viahElah-qWfGnlv---t~~ww~~lwlnEGfa~y~~~~~~~~~~-Pe~~ 717 (1094)
..|-..+.....|+= ........++..+||||+.| +++.... .-.-.-+..+-||.|.++.-....... +.|.
T Consensus 41 ~~g~~~~~~~i~l~~--~~~~~~~~~l~~~iaHE~hH~~r~~~~~~~~~~~TLld~~I~EGlAe~f~~~~~g~~~~~~w~ 118 (195)
T PF10026_consen 41 GKGGGAIPGYIFLFL--LPNDYSLEELPALIAHEYHHNCRYEQIGWDPEDTTLLDSLIMEGLAEYFAEELYGEEYLGPWV 118 (195)
T ss_pred cccccCCCCEEEEEe--cCCcccHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHhhHHHHHHHHHcCCCCCchhh
Confidence 334444444444441 22334556999999999999 6666553 111233556789999988865554444 4454
No 36
>PF01447 Peptidase_M4: Thermolysin metallopeptidase, catalytic domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR013856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1BQB_A 1U4G_A 1EZM_A 3DBK_A 1ESP_A 1NPC_A 1LND_E ....
Probab=66.29 E-value=14 Score=36.49 Aligned_cols=74 Identities=16% Similarity=0.216 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCCCCc--ccEEEcCCCC---CcccccccceeeecceeeecCCCCch-hhhhhhhhh
Q psy13037 134 EHMEFAQKTAIAAINFYVEYFNISYPLPK--LDLIAIPDFV---SGAMEHWGLVTFREAAVLFKKGSSSI-VNKKRVAMT 207 (1094)
Q Consensus 134 ~~~~~~l~~~~~~l~~~e~~fg~~yP~~k--~d~V~vp~~~---~g~me~~gli~~~e~~ll~~~~~~~~-~~~~~~~~~ 207 (1094)
..+..|...+.++.+||.+.|| .-++.- ..++..-.++ ..|.=+ -+.+.|....... ..-..-..+
T Consensus 67 ~~~vdA~~~~~~v~d~y~~~~g-r~siD~~G~~~~~~Vhyg~~~~NAfW~-------g~~m~yGdG~~~~f~~~~~~lDV 138 (150)
T PF01447_consen 67 SAAVDAHYNAGKVYDYYKNVFG-RNSIDGNGMPIISRVHYGKNYNNAFWN-------GSQMVYGDGDGQIFKPFASSLDV 138 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS-S-STTSS-S-EEEEESESSSTT-EEE--------SSSEEEE---SSSBS-GGG-HHH
T ss_pred cHHHHHHHhHHHHHHHHHHHHC-CCCcCCCCcEEEEEEeCCCCccCcccc-------CCEEEEECCCCcccccCccccce
Confidence 3456677788999999999999 666652 3333221111 123222 2334444432211 111122469
Q ss_pred HhHHHHHH
Q psy13037 208 TSHELAHM 215 (1094)
Q Consensus 208 iaHElaHq 215 (1094)
+|||++|-
T Consensus 139 vaHEltHG 146 (150)
T PF01447_consen 139 VAHELTHG 146 (150)
T ss_dssp HHHHHHHH
T ss_pred eeeccccc
Confidence 99999995
No 37
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=64.16 E-value=4.1 Score=47.32 Aligned_cols=72 Identities=28% Similarity=0.450 Sum_probs=52.6
Q ss_pred eEecCCCCccccccccccceeeccccccCCCCchhhh-hHHHHhhhhcccccccccccchhh-----------HHHHHhc
Q psy13037 630 LIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNK-KRVAMTTSHELAHMWFGDLVTMGW-----------WNDLWLN 697 (1094)
Q Consensus 630 ~ialpdf~~gaMEnwGLityre~~lL~d~~~ss~~~k-~~va~viahElahqWfGnlvt~~w-----------w~~lwln 697 (1094)
++.+.|-..|+||+ +|-+.+.++...-+..+| |.....++||..|-|-+--+-+.- =.-+|+.
T Consensus 212 l~~~s~q~~GGlEH-----~~St~l~~~r~~~~~~~ky~~~l~llsHEyfH~WNvKrIrpa~l~p~~~d~en~t~~lW~~ 286 (558)
T COG3975 212 LLHLSDQIYGGLEH-----RRSTALIYDRFGFTDQDKYQDLLGLLSHEYFHAWNVKRIRPAALEPFNLDKENYTPLLWFS 286 (558)
T ss_pred EEEecCCCCCCcee-----ccccccccccccccchhHHHHHHHHHHHHHHHhccceeccccccCCccccccCCCcceeee
Confidence 56778888888884 466666666644455566 777889999999999876443322 2468999
Q ss_pred ccchhhhhh
Q psy13037 698 EGFASYMQY 706 (1094)
Q Consensus 698 EGfa~y~~~ 706 (1094)
|||.+|..-
T Consensus 287 EG~T~Yy~~ 295 (558)
T COG3975 287 EGFTSYYDR 295 (558)
T ss_pred cCchHHHHH
Confidence 999998875
No 38
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=63.03 E-value=18 Score=37.77 Aligned_cols=93 Identities=16% Similarity=0.261 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCcccEEEcCCCCCcccccccceeeecceeeecCCCCchhhhhhhhhhHhHHHHHHh
Q psy13037 137 EFAQKTAIAAINFYVEYFNISYPLPKLDLIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMW 216 (1094)
Q Consensus 137 ~~~l~~~~~~l~~~e~~fg~~yP~~k~d~V~vp~~~~g~me~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 216 (1094)
+.+...+...++.+++.+|.++ +++.+=-. ....|....-|.|.++-..+.+++ .-+..+|+||+||--
T Consensus 108 ~~~~~~l~~~~~~~~~~~~~~~--~~i~ir~~-ksrWGsc~~~~~I~ln~~L~~~P~--------~~idYVvvHEL~Hl~ 176 (205)
T PF01863_consen 108 KQAKEYLPERLKKYAKKLGLPP--PKIKIRDM-KSRWGSCSSKGNITLNWRLVMAPP--------EVIDYVVVHELCHLR 176 (205)
T ss_pred HHHHHHHHHHHHHHHHHcCCCc--ceEEEeeh-hhccccCCCCCcEEeecccccCCc--------cHHHHHHHHHHHHhc
Confidence 3445667788888899999643 34333222 223566666678888766554443 245679999999987
Q ss_pred hcCccccCCCchhhHhHHHHHHHHHHHHhhcCcchhHHHH
Q psy13037 217 FGDLVTMGWWNDLWLNEGFASYMQYKALAKVEPTWEVDTM 256 (1094)
Q Consensus 217 fGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~~~ 256 (1094)
.-| .-...| ..+++..|+|.....
T Consensus 177 ~~n-----Hs~~Fw-----------~~v~~~~Pd~k~~~~ 200 (205)
T PF01863_consen 177 HPN-----HSKRFW-----------ALVEKYMPDYKERRK 200 (205)
T ss_pred cCC-----CCHHHH-----------HHHHHHCcCHHHHHH
Confidence 644 333444 356677788764443
No 39
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=62.06 E-value=9.2 Score=37.61 Aligned_cols=68 Identities=18% Similarity=0.177 Sum_probs=34.7
Q ss_pred HHHHHHH-HHhCCCCCCCcccEEEcCCCCCcccccccceeeecceeeecCCCCchhhhhhhhhhHhHHHHHHhhc
Q psy13037 145 AAINFYV-EYFNISYPLPKLDLIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFG 218 (1094)
Q Consensus 145 ~~l~~~e-~~fg~~yP~~k~d~V~vp~~~~g~me~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG 218 (1094)
+.++.+. .+|+-++|-+++ ..-.... ..||.-..+...+-+++..........+..+|.||+||.+..
T Consensus 5 ~~~~~~n~~~F~~~l~~~~i--~w~~r~~----~~~G~~~~~~~~I~ln~~l~~~~~~~~l~~~l~HEm~H~~~~ 73 (146)
T smart00731 5 QRLEDASLRVFGRKLPHPKV--VWNKRLR----KTGGRCLLKSAEIRLNPKLLTENGRDRLRETLLHELCHAALY 73 (146)
T ss_pred HHHHHHHHHHHCCCCCCCEE--EEehhhh----hhhHHhhcCCCEEEeCHHHHhhccHHHHHhhHHHHHHHHHHH
Confidence 3444455 889877776532 2221111 112322222333444433222223346778999999999974
No 40
>PF05299 Peptidase_M61: M61 glycyl aminopeptidase; InterPro: IPR007963 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M61 (glycyl aminopeptidase family, clan MA(E)).The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example is glycyl aminopeptidase from Sphingomonas capsulata.
Probab=61.84 E-value=2.3 Score=40.11 Aligned_cols=38 Identities=34% Similarity=0.505 Sum_probs=30.6
Q ss_pred HHHhhhhcccccccc-----------cccchhhHHHHHhcccchhhhhh
Q psy13037 669 VAMTTSHELAHMWFG-----------DLVTMGWWNDLWLNEGFASYMQY 706 (1094)
Q Consensus 669 va~viahElahqWfG-----------nlvt~~ww~~lwlnEGfa~y~~~ 706 (1094)
...++|||.-|.|-+ |+..+.-=+.||+-|||.+|++.
T Consensus 4 ~l~l~sHEffH~WnvkrirP~~l~p~dy~~~~~t~~LWv~EG~T~Y~~~ 52 (122)
T PF05299_consen 4 FLGLLSHEFFHSWNVKRIRPAELGPFDYEKPNYTELLWVYEGFTSYYGD 52 (122)
T ss_pred hhhhhhhhccccccceEeccccccCCCCCCCCCCCCEeeeeCcHHHHHH
Confidence 345699999999995 45556666788999999999886
No 41
>COG2719 SpoVR Uncharacterized conserved protein [Function unknown]
Probab=59.68 E-value=58 Score=37.22 Aligned_cols=82 Identities=18% Similarity=0.282 Sum_probs=49.5
Q ss_pred HhHHHHHHhhcCccccCCCchhhHhHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHhhhccccCCCCCeeeccCCcccc
Q psy13037 208 TSHELAHMWFGDLVTMGWWNDLWLNEGFASYMQYKALAKVEPTWEVDTMFLTDMLHSTLQLDQTLSSHPIVQTVSNPDQI 287 (1094)
Q Consensus 208 iaHElaHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~~~~~~~~~~ 287 (1094)
|..+.| |+|.--...+ =+|||.|+|..+.++.+++-+..+.+.+..+.++.. +......|+..+
T Consensus 253 ivR~ea-~YF~PQ~qTk-----VMNEGWAtfWHytiln~lydE~~~~~~~~lEfL~~h---~~Vv~qp~~~~p------- 316 (495)
T COG2719 253 IVRKEA-QYFYPQRQTK-----VMNEGWATFWHYTILNHLYDEGKLTERAMLEFLKSH---TNVVFQPPYNSP------- 316 (495)
T ss_pred HHHHHH-HHhcchHHHH-----HhhhhHHHHHHHHHHHhhhhhcccChHHHHHHHHhc---CCeeecCCCCCc-------
Confidence 344443 5665444333 589999999999999999887777666655555422 222222333221
Q ss_pred ccccccc-hhchHHHHHHHHH
Q psy13037 288 TEIFDVI-SYQKGSSVIRMLE 307 (1094)
Q Consensus 288 ~~~f~~i-~Y~Kg~~vl~mL~ 307 (1094)
.|+.| -|..|..++.-++
T Consensus 317 --~ys~iNPYyLGf~m~~DI~ 335 (495)
T COG2719 317 --SYSGINPYYLGFAMFQDIE 335 (495)
T ss_pred --cccCCChHHHhHHHHHHHH
Confidence 12211 3778888888883
No 42
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=50.17 E-value=42 Score=29.11 Aligned_cols=67 Identities=18% Similarity=0.192 Sum_probs=31.9
Q ss_pred HHHHHHHHHhCCCCCCCcccEEEcCCCCC--cccccccceeeecceeeecCCCCchhhhhhhhhhHhHHHHHHh
Q psy13037 145 AAINFYVEYFNISYPLPKLDLIAIPDFVS--GAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMW 216 (1094)
Q Consensus 145 ~~l~~~e~~fg~~yP~~k~d~V~vp~~~~--g~me~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 216 (1094)
.+...+|..||.+ +++..+-.-|.-.. ..+.. -.++.+. .+.+.+..-.. ....-..+++||++|-+
T Consensus 5 ~~r~~~e~~~G~d--l~~Vrvh~~~~a~~~~~~~~A-~A~T~G~-~I~f~~g~~~~-~s~~~~~llaHEl~Hv~ 73 (79)
T PF13699_consen 5 SIRSRLERAFGAD--LSDVRVHTGPAASRAAAALGA-RAFTVGN-DIYFAPGKYNP-DSPEGRALLAHELAHVV 73 (79)
T ss_pred HHHHHHHHHhCCC--ccceEEEeCCchhhhhhccCC-eEEEECC-EEEEcCCCcCC-CCCCcchhHhHHHHHHH
Confidence 3556789999955 56655544332111 11111 1233333 34443321000 01112368999999954
No 43
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=49.58 E-value=20 Score=40.25 Aligned_cols=33 Identities=30% Similarity=0.410 Sum_probs=25.7
Q ss_pred hhhhHhHHHHHHhhcCccccCCCchhhHhHHHHHHHHHHHHhhcC
Q psy13037 204 VAMTTSHELAHMWFGDLVTMGWWNDLWLNEGFASYMQYKALAKVE 248 (1094)
Q Consensus 204 ~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~~ 248 (1094)
.-.++|||+|||= -...|+=|+|+++++..+..
T Consensus 196 ~P~T~~HElAHq~------------G~a~E~EANFiayLac~~s~ 228 (318)
T PF12725_consen 196 LPFTICHELAHQL------------GFASEDEANFIAYLACINSP 228 (318)
T ss_pred ccHHHHHHHHHHh------------CCCCHHHHHHHHHHHHhcCC
Confidence 3458999999995 23479999999998876653
No 44
>PF03272 Enhancin: Viral enhancin protein; InterPro: IPR004954 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M60 (enhancin family, clan MA(E)). The active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The viral enhancin protein, or enhancing factor, is involved in disruption of the peritrophic membrane and fusion of nucleocapsids with mid-gut cells.; GO: 0016032 viral reproduction
Probab=47.50 E-value=7.2e+02 Score=31.80 Aligned_cols=128 Identities=15% Similarity=0.274 Sum_probs=74.4
Q ss_pred hHhHHHHHHhhcCcc-ccCCCchhhHhHHHHHHHHHHHHhhcC---cchhH---HHHHHHHHHHHhhhccccCCCCCeee
Q psy13037 207 TTSHELAHMWFGDLV-TMGWWNDLWLNEGFASYMQYKALAKVE---PTWEV---DTMFLTDMLHSTLQLDQTLSSHPIVQ 279 (1094)
Q Consensus 207 ~iaHElaHqWfGnlV-t~~~w~d~WL~EGfA~y~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~d~~~~~~pl~~ 279 (1094)
.+-|||+|.+=|..+ .-..+.+.| +.=||.++++..+.... ..|-+ ....+...+...+..+ .|
T Consensus 239 ~~LHEIgHgYd~~F~~n~~~~~EVW-nNI~~d~yQ~~~~~~~e~~~~~wly~~G~r~~~e~~i~~~i~~~-----~~--- 309 (775)
T PF03272_consen 239 GALHEIGHGYDFGFTRNGTYLNEVW-NNILADRYQYTYMTQDERQTDGWLYDYGQRERVEREIIALIDNN-----KP--- 309 (775)
T ss_pred hhhhhhhhhcceeEeeCCcchhhhh-hhhhhhhhhhhhcChhhhhhccceecCCchHHHHHHHHHHHhcC-----CC---
Confidence 678999999988887 334466777 66778888876665211 11111 0111111221111111 01
Q ss_pred ccCCccccccccccch-hchHHHHHHHHHHHhCHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHh-cCCCCHHHHHHH
Q psy13037 280 TVSNPDQITEIFDVIS-YQKGSSVIRMLENMMGEESFAHGVTSYLNEFQFKNA--ETNDLWSHLQKF-ANNMSVTSVMDT 355 (1094)
Q Consensus 280 ~~~~~~~~~~~f~~i~-Y~Kg~~vl~mL~~~lG~e~F~~~l~~yl~~~~~~~~--~~~df~~~l~~~-~~~~~l~~~~~~ 355 (1094)
|+... -.|=..+..|+...-|++.|+..-+.|-+. ...+. ..-.+++.+... ++ .|+..+++-
T Consensus 310 -----------~~~w~~r~rL~~l~~~m~~~~G~~~f~~~n~~~R~~-~~~~~~~~~~~i~d~l~~~~~~-~D~~p~~~l 376 (775)
T PF03272_consen 310 -----------FDSWDLRERLIFLTWLMNTKAGKDAFTEMNQEYRQL-NTNGFNPNDHQIFDWLASLYSG-YDFTPYFQL 376 (775)
T ss_pred -----------cccccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-ccCCCCcccccHHHHHHHhhcC-CchHhHHHH
Confidence 22222 235555555788889999998888877765 22222 223344555555 77 999999999
Q ss_pred h
Q psy13037 356 Y 356 (1094)
Q Consensus 356 W 356 (1094)
|
T Consensus 377 ~ 377 (775)
T PF03272_consen 377 V 377 (775)
T ss_pred h
Confidence 8
No 45
>PF12315 DUF3633: Protein of unknown function (DUF3633); InterPro: IPR022087 This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length. The family is found in association with PF00412 from PFAM.
Probab=47.33 E-value=27 Score=35.92 Aligned_cols=41 Identities=22% Similarity=0.182 Sum_probs=30.7
Q ss_pred hhhHhHHHHHHhhcCccccCCCchhhHhHHHHHHHHHHHHhhc
Q psy13037 205 AMTTSHELAHMWFGDLVTMGWWNDLWLNEGFASYMQYKALAKV 247 (1094)
Q Consensus 205 ~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~ 247 (1094)
..++|||+.|-|.-- ..-.--+..+-||+..-+++++++..
T Consensus 94 gsiLAHE~mHa~Lrl--~g~~~L~~~vEEGiCqvla~~wL~~~ 134 (212)
T PF12315_consen 94 GSILAHELMHAWLRL--NGFPNLSPEVEEGICQVLAYLWLESE 134 (212)
T ss_pred hhHHHHHHHHHHhcc--cCCCCCChHHHHHHHHHHHHHHHhhh
Confidence 468999999999721 11112268999999999999998754
No 46
>PRK04351 hypothetical protein; Provisional
Probab=44.88 E-value=27 Score=34.38 Aligned_cols=60 Identities=15% Similarity=0.177 Sum_probs=31.9
Q ss_pred HHHHHHhCCCCCCCcccEEEcC-CCCCcccccccceeeecceeeecCCCCchhhhhhhhhhHhHHHHHH
Q psy13037 148 NFYVEYFNISYPLPKLDLIAIP-DFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHM 215 (1094)
Q Consensus 148 ~~~e~~fg~~yP~~k~d~V~vp-~~~~g~me~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHq 215 (1094)
++-+++|+.++|. .+.+-. .-..||.- .++...+=++|..-.......+..+|+||++|-
T Consensus 12 ~~s~~~F~~~f~~---~v~~n~RlrttgG~~-----~l~~~~I~lnp~ll~~~~~~~l~~vv~HElcH~ 72 (149)
T PRK04351 12 EISLEYFGKPFRH---QAYFNKRLRTTGGRY-----LLKDHHIEFNPKMLEEYGLEELIGIIKHELCHY 72 (149)
T ss_pred HHHHHHhCCCCCc---EEEEeccchhhhhee-----ecCCCeEEeCHHHHhhccHHHHHhhHHHHHHHH
Confidence 3446788877762 333322 11222221 233333444443333334567889999999995
No 47
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=42.46 E-value=18 Score=41.84 Aligned_cols=57 Identities=16% Similarity=0.148 Sum_probs=36.0
Q ss_pred CCCCcccEEEcCCCCCcccccccceeeecceeeecCCCCchhhhhhhhhhHhHHHHHHhhcC
Q psy13037 158 YPLPKLDLIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGD 219 (1094)
Q Consensus 158 yP~~k~d~V~vp~~~~g~me~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 219 (1094)
-|-.-++++.|.+-...+...+|.-++-.+-++.. .+...+++.|||||++|-==++
T Consensus 89 ~~~~~f~f~lV~d~~iNAFA~~Gg~v~vntGLll~-----ae~esElagViAHEigHv~qrH 145 (484)
T COG4783 89 LVKTPFTFFLVNDDSINAFATPGGYVVVNTGLLLT-----AENESELAGVIAHEIGHVAQRH 145 (484)
T ss_pred CCCCCeEEEEecCCccchhhcCCceEEEehHHHHh-----cCCHHHHHHHHHHHHHHHhhhh
Confidence 44456788988776667777765444433333322 2245578899999999954333
No 48
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=40.75 E-value=41 Score=33.35 Aligned_cols=19 Identities=26% Similarity=0.163 Sum_probs=15.8
Q ss_pred hhhhhhhhHhHHHHHHhhc
Q psy13037 200 NKKRVAMTTSHELAHMWFG 218 (1094)
Q Consensus 200 ~~~~~~~~iaHElaHqWfG 218 (1094)
....+..+|.||++|.|..
T Consensus 56 ~~~~~~~tL~HEm~H~~~~ 74 (157)
T PF10263_consen 56 PEEELIDTLLHEMAHAAAY 74 (157)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3557888999999999973
No 49
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=38.92 E-value=27 Score=32.41 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=19.5
Q ss_pred cceeeecCCCCchhhhhhhhhhHhHHHHHHhhcCcc
Q psy13037 186 EAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLV 221 (1094)
Q Consensus 186 e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlV 221 (1094)
...++.++..+.. +-..++|||++|.+++..-
T Consensus 28 ~~~I~in~~~~~~----~~~f~laHELgH~~~~~~~ 59 (122)
T PF06114_consen 28 NPIIFINSNLSPE----RQRFTLAHELGHILLHHGD 59 (122)
T ss_dssp TTEEEEESSS-HH----HHHHHHHHHHHHHHHHH-H
T ss_pred CCEEEECCCCCHH----HHHHHHHHHHHHHHhhhcc
Confidence 3445555553322 2245899999999997765
No 50
>COG1451 Predicted metal-dependent hydrolase [General function prediction only]
Probab=37.61 E-value=1.2e+02 Score=32.06 Aligned_cols=93 Identities=17% Similarity=0.260 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCcccEEEcCCCCCcccccccceeeecceeeecCCCCchhhhhhhhhhHhHHHHHHh
Q psy13037 137 EFAQKTAIAAINFYVEYFNISYPLPKLDLIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMW 216 (1094)
Q Consensus 137 ~~~l~~~~~~l~~~e~~fg~~yP~~k~d~V~vp~~~~g~me~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 216 (1094)
+.+.+.....++.|.+.+|.+++--++. .. .-..|+-...|.|.+.-... ......+..+++||+||-=
T Consensus 119 ~~~~~~l~~~~~~~~~~l~~~~~~~~ik--~~-k~~WGScs~~~~i~~~~~l~--------~~p~~~i~YVvvHELaHLk 187 (223)
T COG1451 119 EILREILEIRLKEYAKKLGVPPRAIKLK--NM-KRRWGSCSKAGEIRFNWRLV--------MAPEEVIDYVVVHELAHLK 187 (223)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccceeee--ec-cceeeeecCCCcEEeehhhh--------cCCHHHHHHHHHHHHHHHh
Confidence 4566778888888999999765432222 11 11234444444444443221 1223456789999999998
Q ss_pred hcCccccCCCchhhHhHHHHHHHHHHHHhhcCcchhHHHH
Q psy13037 217 FGDLVTMGWWNDLWLNEGFASYMQYKALAKVEPTWEVDTM 256 (1094)
Q Consensus 217 fGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~~~ 256 (1094)
..|- ++ ..| ..++.++|++.....
T Consensus 188 e~nH-s~----~Fw-----------~lv~~~~P~~~~~~~ 211 (223)
T COG1451 188 EKNH-SK----RFW-----------RLVEKYMPDYRAAKR 211 (223)
T ss_pred hhhc-cH----HHH-----------HHHHHHCCChHHHHH
Confidence 8872 22 344 355677788765444
No 51
>PRK05457 heat shock protein HtpX; Provisional
Probab=36.66 E-value=42 Score=37.11 Aligned_cols=69 Identities=22% Similarity=0.424 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhCCCCCCCcccEEEcCC---CCCcccccccceeeecceeeecCCCCchhhhhhhhhhHhHHHHHHhhcC
Q psy13037 143 AIAAINFYVEYFNISYPLPKLDLIAIPD---FVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGD 219 (1094)
Q Consensus 143 ~~~~l~~~e~~fg~~yP~~k~d~V~vp~---~~~g~me~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 219 (1094)
..+.++-+.+..|+ |.|++.++-.+. |..|.-.+.+.|.+... ++ ..-+..++..++|||++|.--|+
T Consensus 79 L~~~v~~la~~~g~--p~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~g-Ll------~~L~~~El~aVlAHElgHi~~~d 149 (284)
T PRK05457 79 LVETVARQARQAGI--GMPEVAIYHSPEINAFATGASKNNSLVAVSTG-LL------QNMSRDEVEAVLAHEISHIANGD 149 (284)
T ss_pred HHHHHHHHHHhCCC--CCCCEEEEeCCCceEEEecCCCCCeEEEeehH-Hh------hhCCHHHHHHHHHHHHHHHHcCC
Confidence 44566666777885 567766554322 12222222233444432 11 12245678899999999987665
Q ss_pred c
Q psy13037 220 L 220 (1094)
Q Consensus 220 l 220 (1094)
.
T Consensus 150 ~ 150 (284)
T PRK05457 150 M 150 (284)
T ss_pred H
Confidence 3
No 52
>PRK03982 heat shock protein HtpX; Provisional
Probab=36.64 E-value=49 Score=36.67 Aligned_cols=67 Identities=24% Similarity=0.361 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhCCCCCCCcccEEEcCCCCCccccc-----ccceeeecceeeecCCCCchhhhhhhhhhHhHHHHHHhh
Q psy13037 143 AIAAINFYVEYFNISYPLPKLDLIAIPDFVSGAMEH-----WGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWF 217 (1094)
Q Consensus 143 ~~~~l~~~e~~fg~~yP~~k~d~V~vp~~~~g~me~-----~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWf 217 (1094)
..+.++-+.+..|++ .+++-++ |+-...|+-. -|.|.+.+.. + ..-+..++..++|||++|-=-
T Consensus 70 L~~~v~~la~~~g~~--~p~v~v~--~~~~~NAfa~G~~~~~~~V~vt~gL-l------~~l~~~El~AVlAHElgHi~~ 138 (288)
T PRK03982 70 LYRIVERLAERANIP--KPKVAIV--PTQTPNAFATGRDPKHAVVAVTEGI-L------NLLNEDELEGVIAHELTHIKN 138 (288)
T ss_pred HHHHHHHHHHHcCCC--CCeEEEE--eCCCcceEEeccCCCCeEEEeehHH-H------hhCCHHHHHHHHHHHHHHHHc
Confidence 456666667777854 4555443 3322223221 2344343332 1 112456788999999999866
Q ss_pred cCc
Q psy13037 218 GDL 220 (1094)
Q Consensus 218 Gnl 220 (1094)
++.
T Consensus 139 ~h~ 141 (288)
T PRK03982 139 RDT 141 (288)
T ss_pred CCH
Confidence 553
No 53
>cd04269 ZnMc_adamalysin_II_like Zinc-dependent metalloprotease; adamalysin_II_like subfamily. Adamalysin II is a snake venom zinc endopeptidase. This subfamily contains other snake venom metalloproteinases, as well as membrane-anchored metalloproteases belonging to the ADAM family. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=34.66 E-value=1.1e+02 Score=31.39 Aligned_cols=15 Identities=40% Similarity=0.446 Sum_probs=12.2
Q ss_pred hhhhhhHhHHHHHHh
Q psy13037 202 KRVAMTTSHELAHMW 216 (1094)
Q Consensus 202 ~~~~~~iaHElaHqW 216 (1094)
...+.++|||++|+.
T Consensus 129 ~~~a~~~AHElGH~l 143 (194)
T cd04269 129 LLFAVTMAHELGHNL 143 (194)
T ss_pred HHHHHHHHHHHHhhc
Confidence 345679999999986
No 54
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification. ; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.
Probab=34.59 E-value=38 Score=35.80 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=18.8
Q ss_pred hhhhhhhhHhHHHHHHhhcCcccc
Q psy13037 200 NKKRVAMTTSHELAHMWFGDLVTM 223 (1094)
Q Consensus 200 ~~~~~~~~iaHElaHqWfGnlVt~ 223 (1094)
+..++..++|||++|---++....
T Consensus 85 ~~~el~aVlaHElgH~~~~h~~~~ 108 (226)
T PF01435_consen 85 SEDELAAVLAHELGHIKHRHILKS 108 (226)
T ss_dssp SHHHHHHHHHHHHHHHHTTHCCCC
T ss_pred cHHHHHHHHHHHHHHHHcCCcchH
Confidence 455778899999999998776544
No 55
>COG3227 LasB Zinc metalloprotease (elastase) [Amino acid transport and metabolism]
Probab=32.25 E-value=89 Score=36.34 Aligned_cols=111 Identities=17% Similarity=0.170 Sum_probs=60.2
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHhCCCCCCCc--ccEEEcCCCCCcccccccceeeecceeeecCCCCchhh-hhhhhh
Q psy13037 130 EGQLEHMEFAQKTAIAAINFYVEYFNISYPLPK--LDLIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVN-KKRVAM 206 (1094)
Q Consensus 130 ~~~~~~~~~~l~~~~~~l~~~e~~fg~~yP~~k--~d~V~vp~~~~g~me~~gli~~~e~~ll~~~~~~~~~~-~~~~~~ 206 (1094)
++..+.+..|-..+..+.+||.+.|| +-.++- +.++-.--|+ -++.-.+..-..++|.......-. -.....
T Consensus 265 ~~~~~a~~dAh~~~g~vyD~yk~~fg-r~S~Dn~g~~l~s~vHyG----~~ynNAfWdG~qMvyGDGDG~~f~~~S~sLD 339 (507)
T COG3227 265 PSSDEAAVDAHYNAGKVYDYYKNTFG-RNSYDNNGMPLVSTVHYG----KNYNNAFWDGDQMVYGDGDGSFFTPFSGSLD 339 (507)
T ss_pred ccchhhhHHHHhhcchHHHHHHHHhc-ccCcCCCCCceEEEEeec----cccccccccCceeEeecCCcceecccccccc
Confidence 33444556666778999999999999 334432 3333222221 111111222234444443221111 111245
Q ss_pred hHhHHHHHH---hhcCccccCCCchhhHhHHHHHHHHHHHHhhc
Q psy13037 207 TTSHELAHM---WFGDLVTMGWWNDLWLNEGFASYMQYKALAKV 247 (1094)
Q Consensus 207 ~iaHElaHq---WfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~ 247 (1094)
++|||+.|. .--+|+--..- -=|||+|+.-+.-++....
T Consensus 340 VvAHElTHGvtq~tA~L~Y~~qs--GALNEsfSDvfG~~i~~~~ 381 (507)
T COG3227 340 VVAHELTHGVTQQTAGLIYRGQS--GALNESFSDVFGTLIEQYV 381 (507)
T ss_pred eehhhhcchhhhhccCceecCCC--CchhhHHHHHHHHHHHHHh
Confidence 899999994 44556554433 2489999998886554444
No 56
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=31.72 E-value=21 Score=39.86 Aligned_cols=36 Identities=31% Similarity=0.443 Sum_probs=27.4
Q ss_pred hHHHHhhhhccccc-ccccccchhhHHHHHhcccchhhhhhhhh
Q psy13037 667 KRVAMTTSHELAHM-WFGDLVTMGWWNDLWLNEGFASYMQYKAL 709 (1094)
Q Consensus 667 ~~va~viahElahq-WfGnlvt~~ww~~lwlnEGfa~y~~~~~~ 709 (1094)
..+|.+|=||++|| -+-. +|.=.||+||++.+-.|+
T Consensus 163 ~~LA~LIfHELaHq~~Yv~-------~dt~FNEsfAtfVe~~G~ 199 (337)
T PF10023_consen 163 GELARLIFHELAHQTLYVK-------GDTAFNESFATFVEREGA 199 (337)
T ss_pred hHHHHHHHHHHhhceeecC-------CCchhhHHHHHHHHHHHH
Confidence 47888899999994 2222 255589999999998665
No 57
>PRK04897 heat shock protein HtpX; Provisional
Probab=30.80 E-value=62 Score=36.09 Aligned_cols=69 Identities=20% Similarity=0.331 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhCCCCCCCcccEEEcCC---CCCcccccccceeeecceeeecCCCCchhhhhhhhhhHhHHHHHHhhcC
Q psy13037 143 AIAAINFYVEYFNISYPLPKLDLIAIPD---FVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGD 219 (1094)
Q Consensus 143 ~~~~l~~~e~~fg~~yP~~k~d~V~vp~---~~~g~me~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 219 (1094)
..+.++-+.+..|+ |.|++-++--+. |..|.-..-+.|.+.... -..-+..++..++|||++|-=-|+
T Consensus 82 L~~~v~~la~~~gi--p~p~v~v~~~~~~NAfa~G~~~~~~~v~vt~gL-------l~~l~~~El~aVlAHElgHi~~~d 152 (298)
T PRK04897 82 LWHIVEDMAMVAQI--PMPRVFIIDDPSPNAFATGSSPKNAAVAVTTGL-------LAIMNREELEGVIGHEISHIRNYD 152 (298)
T ss_pred HHHHHHHHHHHcCC--CCCcEEEecCCCCceEEeccCCCCcEEEeehHH-------HhhCCHHHHHHHHHHHHHHHhcCC
Confidence 45667777777885 456665543321 111111122334333321 111234678899999999965554
Q ss_pred c
Q psy13037 220 L 220 (1094)
Q Consensus 220 l 220 (1094)
.
T Consensus 153 ~ 153 (298)
T PRK04897 153 I 153 (298)
T ss_pred H
Confidence 3
No 58
>PRK03072 heat shock protein HtpX; Provisional
Probab=30.12 E-value=55 Score=36.28 Aligned_cols=70 Identities=21% Similarity=0.357 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCcccEEEcCC---CCCcccccccceeeecceeeecCCCCchhhhhhhhhhHhHHHHHHhhc
Q psy13037 142 TAIAAINFYVEYFNISYPLPKLDLIAIPD---FVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFG 218 (1094)
Q Consensus 142 ~~~~~l~~~e~~fg~~yP~~k~d~V~vp~---~~~g~me~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG 218 (1094)
...+.++-+.+..|+ |.|++-++-.+. |..|....-+.+..... ++ ..-+..++..++|||++|-=-|
T Consensus 71 ~L~~~v~~la~~~g~--p~p~vyv~~~~~~NAFa~G~~~~~~~v~vt~g-Ll------~~l~~~El~aVlAHElgHi~~~ 141 (288)
T PRK03072 71 AMYRIVRELSTAARQ--PMPRLYISPTAAPNAFATGRNPRNAAVCCTEG-IL------QILNERELRGVLGHELSHVYNR 141 (288)
T ss_pred HHHHHHHHHHHHcCC--CCCCEEEecCCCCceEEecCCCCCcEEEecHH-HH------HhCCHHHHHHHHHHHHHHHhcC
Confidence 355777777788885 456655443322 11221111112332222 22 1224567889999999996655
Q ss_pred Cc
Q psy13037 219 DL 220 (1094)
Q Consensus 219 nl 220 (1094)
+.
T Consensus 142 d~ 143 (288)
T PRK03072 142 DI 143 (288)
T ss_pred CH
Confidence 43
No 59
>COG4324 Predicted aminopeptidase [General function prediction only]
Probab=29.65 E-value=23 Score=37.27 Aligned_cols=37 Identities=32% Similarity=0.364 Sum_probs=28.7
Q ss_pred hhHHHHhhhhccccccc-ccccchhhHHHHHhcccchhhhhhhhh
Q psy13037 666 KKRVAMTTSHELAHMWF-GDLVTMGWWNDLWLNEGFASYMQYKAL 709 (1094)
Q Consensus 666 k~~va~viahElahqWf-Gnlvt~~ww~~lwlnEGfa~y~~~~~~ 709 (1094)
..++|..|=||+|||=| -| +|.=.||.||+..|-.|+
T Consensus 194 d~~lA~LIFHELAHQk~Y~~-------~DtAFNEsFAtaVEt~Gv 231 (376)
T COG4324 194 DTYLASLIFHELAHQKIYVN-------NDTAFNESFATAVETSGV 231 (376)
T ss_pred hHHHHHHHHHHHhhheEeec-------CcchHhHHHHHHHHHHhH
Confidence 46899999999999643 33 345579999999998666
No 60
>PRK01345 heat shock protein HtpX; Provisional
Probab=29.35 E-value=69 Score=36.06 Aligned_cols=69 Identities=22% Similarity=0.176 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhCCCCCCCcccEEEcCCCCCcccc---cccceeeecceeeecCCCCchhhhhhhhhhHhHHHHHHhhcC
Q psy13037 143 AIAAINFYVEYFNISYPLPKLDLIAIPDFVSGAME---HWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGD 219 (1094)
Q Consensus 143 ~~~~l~~~e~~fg~~yP~~k~d~V~vp~~~~g~me---~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 219 (1094)
..++++-+.+..|++ .+++-++-.+.....+.. .-+.|.+.+. |+- ..+..++..++|||++|.=-++
T Consensus 69 L~~~v~~La~~agi~--~p~v~vid~~~~NAFa~G~~~~~~~V~vt~g-LL~------~L~~dEL~aVlAHElgHi~~~d 139 (317)
T PRK01345 69 LYRMVRDLARRAGLP--MPKVYIIDNPQPNAFATGRNPENAAVAATTG-LLQ------RLSPEEVAGVMAHELAHVKNRD 139 (317)
T ss_pred HHHHHHHHHHHcCCC--CCcEEEEcCCCcceEEecCCCCCeEEEechH-HHh------hCCHHHHHHHHHHHHHHHHcCC
Confidence 456777777888865 456544332211111111 1123444433 221 1234578899999999987655
Q ss_pred c
Q psy13037 220 L 220 (1094)
Q Consensus 220 l 220 (1094)
.
T Consensus 140 ~ 140 (317)
T PRK01345 140 T 140 (317)
T ss_pred H
Confidence 3
No 61
>PRK03001 M48 family peptidase; Provisional
Probab=28.67 E-value=74 Score=35.20 Aligned_cols=66 Identities=18% Similarity=0.252 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhCCCCCCCcccEEEcCCCCCcccc-----cccceeeecceeeecCCCCchhhhhhhhhhHhHHHHHHhh
Q psy13037 143 AIAAINFYVEYFNISYPLPKLDLIAIPDFVSGAME-----HWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWF 217 (1094)
Q Consensus 143 ~~~~l~~~e~~fg~~yP~~k~d~V~vp~~~~g~me-----~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWf 217 (1094)
..+.++-+.+..|+|. |++-++ ++-...|+- ..+.|.+.+..+ ..-+..++..++|||++|-=-
T Consensus 69 L~~~v~~la~~~g~~~--p~v~v~--~~~~~NAfa~G~~~~~~~Ivvt~gLl-------~~l~~~El~aVlAHElgHi~~ 137 (283)
T PRK03001 69 FYRMVRELAQRAGLPM--PKVYLI--NEDQPNAFATGRNPEHAAVAATTGIL-------RVLSEREIRGVMAHELAHVKH 137 (283)
T ss_pred HHHHHHHHHHHcCCCC--CeEEEe--cCCCcceEEecCCCCCeEEEecHHHH-------hhCCHHHHHHHHHHHHHHHhC
Confidence 4566667777888654 454433 321112211 123344443321 112356788999999999765
Q ss_pred cC
Q psy13037 218 GD 219 (1094)
Q Consensus 218 Gn 219 (1094)
++
T Consensus 138 ~h 139 (283)
T PRK03001 138 RD 139 (283)
T ss_pred CC
Confidence 54
No 62
>PF09768 Peptidase_M76: Peptidase M76 family; InterPro: IPR019165 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. Mitochondrial inner membrane protease ATP23 has two roles in the assembly of mitochondrial ATPase. Firstly, it acts as a protease that removes the N-terminal 10 residues of mitochondrial ATPase CF(0) subunit 6 (ATP6) at the intermembrane space side. Secondly, it is involved in the correct assembly of the membrane-embedded ATPase CF(0) particle, probably mediating association of ATP6 with the subunit 9 ring [, ].; GO: 0004222 metalloendopeptidase activity
Probab=27.67 E-value=1.7e+02 Score=29.70 Aligned_cols=61 Identities=20% Similarity=0.302 Sum_probs=32.7
Q ss_pred HHHHHHHHHhCCCCCCCcccEE--EcCCCCCccccc--ccceeeecceeeecCCCCchhhhhhhhhhHhHHHHHHhh
Q psy13037 145 AAINFYVEYFNISYPLPKLDLI--AIPDFVSGAMEH--WGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWF 217 (1094)
Q Consensus 145 ~~l~~~e~~fg~~yP~~k~d~V--~vp~~~~g~me~--~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWf 217 (1094)
-+++-+++ .|.+ |.+.-.++ ..++...||... .|+++ -.+.+ ..+..+..+|+|||.|.|=
T Consensus 20 fl~~~~~~-~gc~-~~~~~~i~c~~C~~~~~Ggf~p~~~~I~l-C~N~~---------~~~~~l~~~l~HELIHayD 84 (173)
T PF09768_consen 20 FLMEALKK-LGCP-PVPPRHIKCEPCDSSVSGGFDPSKKGIVL-CQNRI---------RSQGHLEDTLTHELIHAYD 84 (173)
T ss_pred HHHHHHHH-cCCC-CCCCCCeEEEECcCCCcCCccCCCCCEEE-eeCCC---------CCHHHHHHHHHHHHHHHHH
Confidence 33444444 4535 34443443 345555555443 34433 33322 3455677899999999883
No 63
>PRK02391 heat shock protein HtpX; Provisional
Probab=26.59 E-value=75 Score=35.35 Aligned_cols=69 Identities=14% Similarity=0.247 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhCCCCCCCcccEEEcCC---CCCcccccccceeeecceeeecCCCCchhhhhhhhhhHhHHHHHHhhcC
Q psy13037 143 AIAAINFYVEYFNISYPLPKLDLIAIPD---FVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGD 219 (1094)
Q Consensus 143 ~~~~l~~~e~~fg~~yP~~k~d~V~vp~---~~~g~me~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 219 (1094)
..+.++-+.+..|+| .|++-++-.+. |..|.-..-+.|.+.+. ++ ..-+..++..++|||++|---++
T Consensus 78 L~~~v~~la~~~~~~--~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~g-Ll------~~L~~~El~aVlaHElgHi~~~d 148 (296)
T PRK02391 78 LHAMVERLCALADLP--KPRVAVADSDVPNAFATGRSPKNAVVCVTTG-LM------RRLDPDELEAVLAHELSHVKNRD 148 (296)
T ss_pred HHHHHHHHHHHcCCC--CCcEEEEeCCCCceEEecCCCCCcEEEecHH-HH------hhCCHHHHHHHHHHHHHHHHcCC
Confidence 446666667788865 45655544322 11121112223333332 11 11234578889999999976655
Q ss_pred c
Q psy13037 220 L 220 (1094)
Q Consensus 220 l 220 (1094)
.
T Consensus 149 i 149 (296)
T PRK02391 149 V 149 (296)
T ss_pred H
Confidence 3
No 64
>PHA02456 zinc metallopeptidase motif-containing protein
Probab=26.45 E-value=35 Score=30.84 Aligned_cols=14 Identities=43% Similarity=0.688 Sum_probs=11.5
Q ss_pred hhhhHhHHHHHHhh
Q psy13037 204 VAMTTSHELAHMWF 217 (1094)
Q Consensus 204 ~~~~iaHElaHqWf 217 (1094)
...+++||++|-|=
T Consensus 79 C~~TL~HEL~H~WQ 92 (141)
T PHA02456 79 CRDTLAHELNHAWQ 92 (141)
T ss_pred hHHHHHHHHHHHHh
Confidence 45689999999993
No 65
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]
Probab=25.77 E-value=80 Score=35.11 Aligned_cols=68 Identities=18% Similarity=0.249 Sum_probs=39.4
Q ss_pred HHHHHHHhCCCCCCCcccEEEcCCCCCccccc---ccceeeecceeeecCCCCchhhhhhhhhhHhHHHHHHhhcCccc
Q psy13037 147 INFYVEYFNISYPLPKLDLIAIPDFVSGAMEH---WGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVT 222 (1094)
Q Consensus 147 l~~~e~~fg~~yP~~k~d~V~vp~~~~g~me~---~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt 222 (1094)
+.-....-|.+ +.+++.++-.|.....++.. .|.|.+.+.. + + .-+..++..++|||++|.=-++.+.
T Consensus 105 v~~~a~~~~~~-~~~~v~i~~~~~~NAFa~g~~~~~~~V~vt~gL-l-~-----~l~~dEl~aVlaHElgHi~~rd~~~ 175 (302)
T COG0501 105 VAELARQAGIP-HMPEVYILETPQPNAFALGGGPKNGRVVVTTGL-L-D-----LLNDDELEAVLAHELGHIKNRHTLV 175 (302)
T ss_pred HHHHHHHCCCC-CCCeeEEecCCCccceecCCCCCCeeEEecHHH-H-h-----hCCHHHHHHHHHHHHHHHhcccHHH
Confidence 33344455533 34566666555333334444 3666665542 2 1 2345578899999999988777654
No 66
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=25.61 E-value=1.8e+02 Score=24.60 Aligned_cols=47 Identities=11% Similarity=0.177 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCC
Q psy13037 299 GSSVIRMLENMMGEESFAHGVTSYLNEFQFKNAETNDLWSHLQKFANN 346 (1094)
Q Consensus 299 g~~vl~mL~~~lG~e~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~~~ 346 (1094)
=+.++.+|...++.+.+ ..|..++.+++-+-++-++|.+.+....|+
T Consensus 11 F~~L~~~l~~~l~~~~~-~~l~~~Y~~~k~~kIsR~~fvr~lR~IVGD 57 (70)
T PF12174_consen 11 FPMLFSALSKHLPPSKM-DLLQKHYEEFKKKKISREEFVRKLRQIVGD 57 (70)
T ss_pred HHHHHHHHHHHCCHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 36889999999999886 456666677788889999999999999884
No 67
>cd04272 ZnMc_salivary_gland_MPs Zinc-dependent metalloprotease, salivary_gland_MPs. Metalloproteases secreted by the salivary glands of arthropods.
Probab=25.37 E-value=1.6e+02 Score=31.11 Aligned_cols=14 Identities=43% Similarity=0.532 Sum_probs=11.5
Q ss_pred hhhhhHhHHHHHHh
Q psy13037 203 RVAMTTSHELAHMW 216 (1094)
Q Consensus 203 ~~~~~iaHElaHqW 216 (1094)
..+.++|||++|..
T Consensus 144 ~~~~~~AHElGH~l 157 (220)
T cd04272 144 YGVYTMTHELAHLL 157 (220)
T ss_pred ccHHHHHHHHHHHh
Confidence 34679999999986
No 68
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1. A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=24.43 E-value=2.8e+02 Score=27.30 Aligned_cols=37 Identities=14% Similarity=0.125 Sum_probs=25.1
Q ss_pred eeEEEEEcCCch---hhHHHHHHHHHHHHHHHHHHhCCCC
Q psy13037 122 FPIKVYAREGQL---EHMEFAQKTAIAAINFYVEYFNISY 158 (1094)
Q Consensus 122 ~~i~v~~~~~~~---~~~~~~l~~~~~~l~~~e~~fg~~y 158 (1094)
.++++|..+... .......+.+.+++...++..++.+
T Consensus 2 ~~i~~~i~~~~~~~~~~~~~~~~~v~~A~~~W~~~~~l~F 41 (156)
T cd04279 2 SPIRVYIDPTPAPPDSRAQSWLQAVKQAAAEWENVGPLKF 41 (156)
T ss_pred CCeEEEEcCCCCccccchHHHHHHHHHHHHHHHHhCCeEE
Confidence 467888877543 1344566788888999888765443
No 69
>COG2856 Predicted Zn peptidase [Amino acid transport and metabolism]
Probab=24.27 E-value=2.2e+02 Score=30.00 Aligned_cols=38 Identities=18% Similarity=0.050 Sum_probs=25.1
Q ss_pred hhHhHHHHHHhhcCcc-----ccCCCchhhHhHHHHHHHHHHH
Q psy13037 206 MTTSHELAHMWFGDLV-----TMGWWNDLWLNEGFASYMQYKA 243 (1094)
Q Consensus 206 ~~iaHElaHqWfGnlV-----t~~~w~d~WL~EGfA~y~~~~~ 243 (1094)
-++|||++|-|+.-.. ....+...=..|..|++++..+
T Consensus 74 FtlAHELGH~llH~~~~~~~~~~~~~~~~~~~E~~AN~FAa~l 116 (213)
T COG2856 74 FTLAHELGHALLHTDLNTRFDAEPTLQQDRKIEAEANAFAAEL 116 (213)
T ss_pred HHHHHHHhHHHhccccchhhhcccccchhHHHHHHHHHHHHHH
Confidence 4899999999997653 2222344455677777776544
No 70
>PF08014 DUF1704: Domain of unknown function (DUF1704); InterPro: IPR012548 This family contains many hypothetical proteins.
Probab=23.95 E-value=3e+02 Score=31.39 Aligned_cols=85 Identities=15% Similarity=0.132 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhCCCCCCCcccEEEcCCCCCcccccccceeeecceeeecCCCCchhhhhhhhhhHhHHHH-H--------
Q psy13037 144 IAAINFYVEYFNISYPLPKLDLIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELA-H-------- 214 (1094)
Q Consensus 144 ~~~l~~~e~~fg~~yP~~k~d~V~vp~~~~g~me~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHEla-H-------- 214 (1094)
..+-++..++++ .. --++.+.+-++...++|-..+-|.++.+. .-...++..++.||+. |
T Consensus 116 ~~~~~~~~~y~~-~~-~~~~~V~~sddl~a~A~v~~~~l~I~~~~---------~fs~~~l~~L~~HEigvH~lt~~Ng~ 184 (349)
T PF08014_consen 116 SRLQERLKKYFG-KE-GFEVKVELSDDLLARAMVSGDRLKINKNA---------MFSERDLEALLHHEIGVHLLTTLNGR 184 (349)
T ss_pred HHHHHHHHHHhc-cc-CceEEEEEcCCcchhhcccCCeeEEcCCC---------CcCHHHHHHHHHHhhhhhhccccccc
Confidence 334445556666 22 22455555578878887766555544432 2245577889999994 4
Q ss_pred ----HhhcCccccCCCchhhHhHHHHHHHHHHH
Q psy13037 215 ----MWFGDLVTMGWWNDLWLNEGFASYMQYKA 243 (1094)
Q Consensus 215 ----qWfGnlVt~~~w~d~WL~EGfA~y~~~~~ 243 (1094)
.|++...-+ ..=.-||+|.+.+++.
T Consensus 185 ~QPl~~l~~Glp~----~~~TQEGLAvl~E~l~ 213 (349)
T PF08014_consen 185 AQPLKILSLGLPG----YTPTQEGLAVLSEYLS 213 (349)
T ss_pred cCCcHHhCCCCCC----CCCCchHHHHHHHHHh
Confidence 233322211 1223699999999764
No 71
>KOG3314|consensus
Probab=23.57 E-value=2.7e+02 Score=27.52 Aligned_cols=57 Identities=16% Similarity=0.148 Sum_probs=34.5
Q ss_pred HHhCCCCCCCcccEEEcCCCCCcccc-cccceeeecceeeecCCCCchhhhhhhhhhHhHHHHHHhhc
Q psy13037 152 EYFNISYPLPKLDLIAIPDFVSGAME-HWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFG 218 (1094)
Q Consensus 152 ~~fg~~yP~~k~d~V~vp~~~~g~me-~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG 218 (1094)
+..|....-.++.-+..|+-..||.- .-| |++.++.| ..+..+..+|+||+.|.+=.
T Consensus 48 ~k~~c~~~d~~isc~~C~~~~~GGy~~~~g-IvlCqN~l---------~~q~h~n~vv~HElIH~fDd 105 (194)
T KOG3314|consen 48 EKSGCRVGDNFISCVVCTGPVAGGYTPGRG-IVLCQNRL---------TIQDHVNQVVIHELIHAFDD 105 (194)
T ss_pred HHcCCCccCCceEEeeCCCCccCCccCCCc-eEEecccc---------chHHHHHHHHHHHHHHHHHh
Confidence 45565544444444555666666654 334 56666554 23456778999999998643
No 72
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A ....
Probab=22.43 E-value=46 Score=33.73 Aligned_cols=13 Identities=38% Similarity=0.327 Sum_probs=11.0
Q ss_pred hhhhHhHHHHHHh
Q psy13037 204 VAMTTSHELAHMW 216 (1094)
Q Consensus 204 ~~~~iaHElaHqW 216 (1094)
-..++|||++||+
T Consensus 111 ~~~~~aHElGH~l 123 (173)
T PF13574_consen 111 GIDTFAHELGHQL 123 (173)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eeeeehhhhHhhc
Confidence 3467999999998
No 73
>KOG2661|consensus
Probab=22.37 E-value=1.8e+02 Score=32.27 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=17.3
Q ss_pred hhhhhhhhhHhHHHHHHhhcCc
Q psy13037 199 VNKKRVAMTTSHELAHMWFGDL 220 (1094)
Q Consensus 199 ~~~~~~~~~iaHElaHqWfGnl 220 (1094)
.+...++.+++||+|||=-++.
T Consensus 270 k~ddglAtvLgHE~aHaVarH~ 291 (424)
T KOG2661|consen 270 KDDDGLATVLGHEIAHAVARHA 291 (424)
T ss_pred cChHHHHHHHHHHHHHHHHHHH
Confidence 3455788899999999987654
No 74
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=22.22 E-value=18 Score=35.57 Aligned_cols=39 Identities=21% Similarity=0.217 Sum_probs=22.3
Q ss_pred ccccceeeccccccCCCCchhhhhHHHHhhhhccccccc
Q psy13037 644 WGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWF 682 (1094)
Q Consensus 644 wGLityre~~lL~d~~~ss~~~k~~va~viahElahqWf 682 (1094)
||.-.++...+.+++..-.......+..||.||++|.+.
T Consensus 34 ~G~~~~~~~~I~ln~~l~~~~~~~~l~~~l~HEm~H~~~ 72 (146)
T smart00731 34 GGRCLLKSAEIRLNPKLLTENGRDRLRETLLHELCHAAL 72 (146)
T ss_pred hHHhhcCCCEEEeCHHHHhhccHHHHHhhHHHHHHHHHH
Confidence 454444344344443222223346777899999999754
No 75
>PRK02870 heat shock protein HtpX; Provisional
Probab=21.92 E-value=1.4e+02 Score=33.93 Aligned_cols=16 Identities=25% Similarity=0.634 Sum_probs=13.6
Q ss_pred hhhhhhhhHhHHHHHH
Q psy13037 200 NKKRVAMTTSHELAHM 215 (1094)
Q Consensus 200 ~~~~~~~~iaHElaHq 215 (1094)
+..++..++|||++|-
T Consensus 169 ~~dEL~aVlAHELgHi 184 (336)
T PRK02870 169 DRDELQAVMAHELSHI 184 (336)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4567889999999996
No 76
>PRK01265 heat shock protein HtpX; Provisional
Probab=21.73 E-value=1.2e+02 Score=34.25 Aligned_cols=67 Identities=22% Similarity=0.414 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhCCCCCCCcccEEEcCC---CCCcc-cccccceeeecceeeecCCCCchhhhhhhhhhHhHHHHHHhhc
Q psy13037 143 AIAAINFYVEYFNISYPLPKLDLIAIPD---FVSGA-MEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFG 218 (1094)
Q Consensus 143 ~~~~l~~~e~~fg~~yP~~k~d~V~vp~---~~~g~-me~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG 218 (1094)
..+.++-+.+..|+ |.|++-++-.+. |..|. ..+ +-|.+.+. ++ ..-+..++..++|||++|-=-+
T Consensus 85 L~~~v~~la~~~g~--~~p~vyv~~~~~~NAfa~G~~~~~-~~Ivvt~g-Ll------~~l~~~El~aVlAHElgHik~~ 154 (324)
T PRK01265 85 LYSIVAEVAKYNGI--RVPKVYIADVPFPNAFAYGSPIAG-KRIAITLP-LL------KILNRDEIKAVAGHELGHLKHR 154 (324)
T ss_pred HHHHHHHHHHHcCC--CCCeEEEecCCCCCeEEeccCCCC-CEEEEehH-HH------hhCCHHHHHHHHHHHHHHHHcc
Confidence 34666666777775 456655443321 11111 111 23333332 11 1224567889999999996444
Q ss_pred C
Q psy13037 219 D 219 (1094)
Q Consensus 219 n 219 (1094)
+
T Consensus 155 d 155 (324)
T PRK01265 155 D 155 (324)
T ss_pred c
Confidence 3
No 77
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase. Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.
Probab=21.28 E-value=3.3e+02 Score=27.94 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=19.7
Q ss_pred CchhhhhhhhhhHhHHHHHHhhcCc
Q psy13037 196 SSIVNKKRVAMTTSHELAHMWFGDL 220 (1094)
Q Consensus 196 ~~~~~~~~~~~~iaHElaHqWfGnl 220 (1094)
...-....+..++.||+||.++|+-
T Consensus 74 ~~fl~~~~i~~t~lHELaH~~~~~H 98 (186)
T PF08325_consen 74 GGFLPYETILGTMLHELAHNVHGPH 98 (186)
T ss_pred CCEeeHHHHHHHHHHHHHhcccCCc
Confidence 3444556788999999999998873
No 78
>PF01431 Peptidase_M13: Peptidase family M13 This is family M13 in the peptidase classification. ; InterPro: IPR018497 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M13 (neprilysin family, clan MA(E)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. M13 peptidases are well-studied proteases found in a wide range of organisms including mammals and bacteria. In mammals they participate in processes such as cardiovascular development, blood-pressure regulation, nervous control of respiration, and regulation of the function of neuropeptides in the central nervous system. In bacteria they may be used for digestion of milk [, ]. The family includes eukaryotic and prokaryotic oligopeptidases, as well as some of the proteins responsible for the molecular basis of the blood group antigens e.g. Kell []. Neprilysin (3.4.24.11 from EC), is another member of this group, it is variously known as common acute lymphoblastic leukemia antigen (CALLA), enkephalinase (gp100) and neutral endopeptidase metalloendopeptidase (NEP). It is a plasma membrane-bound mammalian enzyme that is able to digest biologically-active peptides, including enkephalins []. The zinc ligands of neprilysin are known and are analogous to those in thermolysin, a related peptidase [, ]. Neprilysins, like thermolysin, are inhibited by phosphoramidon, which appears to selectively inhibit this family in mammals. The enzymes are all oligopeptidases, digesting oligo- and polypeptides, but not proteins []. Neprilysin consists of a short cytoplasmic domain, a membrane-spanning region and a large extracellular domain. The cytoplasmic domain contains a conformationally-restrained octapeptide, which is thought to act as a stop transfer sequence that prevents proteolysis and secretion [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QPJ_A 1R1I_A 1R1J_A 1Y8J_A 1R1H_A 1DMT_A 2YB9_A 3DWB_A 3ZUK_A.
Probab=21.04 E-value=87 Score=32.62 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=20.5
Q ss_pred eecCCCCchhhhhhhhhhHhHHHHHHhhcCccc
Q psy13037 190 LFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVT 222 (1094)
Q Consensus 190 l~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt 222 (1094)
+|+++.......-.+..+|||||.|-.-...+.
T Consensus 22 ~f~~~~p~~~~yg~lG~ilahel~hafd~~g~~ 54 (206)
T PF01431_consen 22 FFDPNYPPALNYGGLGFILAHELMHAFDPEGIN 54 (206)
T ss_dssp T--TTS-HHHHHHTHHHHHHHHHHHCTSTTGGG
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 445554555556677789999999987544433
No 79
>PF01421 Reprolysin: Reprolysin (M12B) family zinc metalloprotease This Prosite motif covers only the active site.; InterPro: IPR001590 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12B (adamalysin family, clan (MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The adamalysins are zinc dependent endopeptidases found in snake venom. There are some mammalian proteins such as P78325 from SWISSPROT, and fertilin Q28472 from SWISSPROT. Fertilin and closely related proteins appear to not have some active site residues and may not be active enzymes. CD156 (also called ADAM8 (3.4.24 from EC) or MS2 human) has been implicated in extravasation of leukocytes. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2E3X_A 2W15_A 2W14_A 2W13_A 2W12_A 1ND1_A 3K7L_A 2DW2_A 2DW0_B 2DW1_A ....
Probab=21.01 E-value=1.2e+02 Score=31.50 Aligned_cols=15 Identities=33% Similarity=0.412 Sum_probs=11.8
Q ss_pred hhhhhhhHhHHHHHH
Q psy13037 201 KKRVAMTTSHELAHM 215 (1094)
Q Consensus 201 ~~~~~~~iaHElaHq 215 (1094)
....+.++|||++|.
T Consensus 128 ~~~~a~~~AHelGH~ 142 (199)
T PF01421_consen 128 GLSFAVIIAHELGHN 142 (199)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh
Confidence 445678899999995
Done!