RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13037
(1094 letters)
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase,
gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma
acidophilum} PDB: 1z1w_A 3q7j_A*
Length = 780
Score = 474 bits (1221), Expect = e-153
Identities = 119/343 (34%), Positives = 186/343 (54%), Gaps = 19/343 (5%)
Query: 74 PTKKSTDDQPGVNQTTVEFATTVPMSTYLVCFIVCDFDHLPSQDAKQGFPIKVYAREGQL 133
P K+ + VEF T MSTYL+ + F + + I + +
Sbjct: 138 PPKRIEVS----ERKVVEFQDTPRMSTYLLYVGIGKFRYEYEKY----RDIDLILASLKD 189
Query: 134 EHMEFAQKTAIAAINFYVEYFNISYPLPKLDLIAIPDFVSGAMEHWGLVTFREAAVLFKK 193
++ A ++ FY YF I Y LPK+ LI++P+F +GAME+WG +TFRE + +
Sbjct: 190 IRSKYPLDMARKSVEFYENYFGIPYALPKMHLISVPEFGAGAMENWGAITFREIYMDIAE 249
Query: 194 GSSSIVNKKRVAMTTSHELAHMWFGDLVTMGWWNDLWLNEGFASYMQYKALAKVEPTWEV 253
+S++ K+ A +HE+AH WFGDLVTM WWNDLWLNE FA++M YK + + P W
Sbjct: 250 -NSAVTVKRNSANVIAHEIAHQWFGDLVTMKWWNDLWLNESFATFMSYKTMDTLFPEWSF 308
Query: 254 DTMFLTDMLHSTLQLDQTLSSHPIVQTVSNPDQITEIFDVISYQKGSSVIRMLENMMGEE 313
F L+ D ++HPI V +PD+I++IFD ISY KG+S++RM+E+ G E
Sbjct: 309 WGDFFVSRTSGALRSDSLKNTHPIEVDVRDPDEISQIFDEISYGKGASILRMIEDYAGYE 368
Query: 314 SFAHGVTSYLNEFQFKNAETNDLWSHLQKFANNMSVTSVMDTYTRQMGFPIITVKKSGDQ 373
F G++ YLN+ +F NAE +DLW+ ++ + V VM+ + + G+P+I +K++G +
Sbjct: 369 EFRKGISKYLNDHKFGNAEGSDLWTAIED-VSGKPVKRVMEYWIKNPGYPVIKLKRNGRK 427
Query: 374 VTFTQQRYLSNPNASYNPDDSPFKYLWDVYITMFTSSDPSHTL 416
+T Q R+L + + W V + + L
Sbjct: 428 ITMYQTRFLL---------NGEEEGRWPVPVNIKKKDGVERIL 461
Score = 179 bits (457), Expect = 9e-47
Identities = 45/90 (50%), Positives = 63/90 (70%), Gaps = 1/90 (1%)
Query: 629 DLIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTM 688
LI++P+F +GAME+WG +TFRE + + +S++ K+ A +HE+AH WFGDLVTM
Sbjct: 220 HLISVPEFGAGAMENWGAITFREIYMDIAE-NSAVTVKRNSANVIAHEIAHQWFGDLVTM 278
Query: 689 GWWNDLWLNEGFASYMQYKALAKVEPTWEV 718
WWNDLWLNE FA++M YK + + P W
Sbjct: 279 KWWNDLWLNESFATFMSYKTMDTLFPEWSF 308
Score = 139 bits (353), Expect = 5e-34
Identities = 23/187 (12%), Positives = 63/187 (33%), Gaps = 12/187 (6%)
Query: 720 YIRCLLKDKLSEETWKVENKSYLEVNLKLVLNDLGCNFGAPSCLKKAADLLKNWFDSGVK 779
R + ++ T K ++++ ++ S ++ + L K++
Sbjct: 565 DARAFCRSRMQFLTGK-QDENLKIALGRVSRL---YVMVDESYAEEMSKLFKDF----DS 616
Query: 780 PEADLRGLVYRYGMENVGEEEWKKMWAKFREESNPQEQIKMLGGLSSVKEPKLLEKFLEM 839
E ++R + G+ K + KFR +++++++ +K L M
Sbjct: 617 AEPEMRSSIATAYALVTGD--LKGLLEKFRSVDRDEDRVRIISAFGKLKSNTDLSTVYGM 674
Query: 840 AKDEKNIRSQDYFTVIVMVAGNPKGLPVAWDYVKKNWDYLVKRFGLNHRVFGRIIPSVCG 899
+ + I+ QD + G + + + +++ F +R R + +
Sbjct: 675 VEKTE-IKKQDMISFFSSALETLPGREFIFANLDRIIRLVIRYFT-GNRTASRTVEMMIP 732
Query: 900 KFTTQER 906
Sbjct: 733 VIGLDHP 739
Score = 88.2 bits (219), Expect = 7e-18
Identities = 22/183 (12%), Positives = 57/183 (31%), Gaps = 35/183 (19%)
Query: 909 EVLDARDRSNLLDDAFNLAESQMIEYSTTFNLMKYMSKEDHFVPWTVVYNKLSRLDDKLY 968
L DR L+DD F S I+ T ++ ++ T + ++ L +
Sbjct: 501 RDLSPLDRIGLVDDLFAFLLSGHIDPETYRQRIRNFFDDEDHNVITAIVGQMEYLRMLTH 560
Query: 969 STEGHEDFKLSRLDDKLYSTEGHEDFKLYIRCLLKDKLSEETWKVENKSYLEVNLKLVLN 1028
+ + +D + + R ++ ++ ++ ++
Sbjct: 561 AFD--------------------DDARAFCRSRMQFLTGKQDENLKIA-------LGRVS 593
Query: 1029 DLGCNFGAPSCLKKAADLLKNWFDSGVKPEADLRGLVYRYVQALPRRGNELQKKENRLRK 1088
L S ++ + L K++ E ++R + +L+ + R
Sbjct: 594 RLYV-MVDESYAEEMSKLFKDF----DSAEPEMRSSIATAYA---LVTGDLKGLLEKFRS 645
Query: 1089 ENT 1091
+
Sbjct: 646 VDR 648
Score = 83.2 bits (206), Expect = 2e-16
Identities = 28/125 (22%), Positives = 41/125 (32%), Gaps = 23/125 (18%)
Query: 476 PKMYDLYLNPYLGKKLFTGTVKINIEVTNATGYIYLHKSSLTIEETTVFKGEDITPIDLL 535
+ YDL L+ + K+ F GT I + + I L L I V G D
Sbjct: 3 VEKYDLTLDFDIQKRTFNGTETITADAGD----IVLDAVGLQINWMKV-NGRDTA----- 52
Query: 536 STFDYAKNEYWVITFKETIDPGSYVLKFKFKGNFSKKNEGFYESMYMNYKNHKRLIATSK 595
Y T + D ++ F G S G Y + + + T+
Sbjct: 53 -------FTYDGQTVRAPGDSQPQKIEISFAGKVSDSLSGIYYAGR------ENGMITTH 99
Query: 596 FEPTY 600
FE T
Sbjct: 100 FEATD 104
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein,
metal-binding, metalloprotease, protease, hydrolase,
adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB:
2yd0_A* 3qnf_A* 3mdj_A*
Length = 897
Score = 475 bits (1225), Expect = e-152
Identities = 140/376 (37%), Positives = 198/376 (52%), Gaps = 37/376 (9%)
Query: 71 SEGPTKKSTDDQPGVNQTTVEFATTVPMSTYLVCFIVCDFDHLPSQDAKQGFPIKVYARE 130
S P KS G F TV MSTYLV FI+ DF+ + K G + VYA
Sbjct: 172 SNMPLVKSVTVAEG--LIEDHFDVTVKMSTYLVAFIISDFESVSKIT-KSGVKVSVYAVP 228
Query: 131 GQLEHMEFAQKTAIAAINFYVEYFNISYPLPKLDLIAIPDFVSGAMEHWGLVTFREAAVL 190
++ ++A A+ + FY +YF+I YPLPK DL AIPDF SGAME+WGL T+RE+A+L
Sbjct: 229 DKINQADYALDAAVTLLEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENWGLTTYRESALL 288
Query: 191 FKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMGWWNDLWLNEGFASYMQYKALAKVEPT 250
F SS +K + MT +HELAH WFG+LVTM WWNDLWLNEGFA +M++ +++ P
Sbjct: 289 FDAEKSSASSKLGITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPE 348
Query: 251 WEVDTMFLTDMLHSTLQLDQTLSSHPIVQTVSNPDQITEIFDVISYQKGSSVIRMLENMM 310
+V F +++D SSHP+ V NP QI E+FD +SY KG+ ++ ML +
Sbjct: 349 LKVGDYFFGKC-FDAMEVDALNSSHPVSTPVENPAQIREMFDDVSYDKGACILNMLREYL 407
Query: 311 GEESFAHGVTSYLNEFQFKNAETNDLWSHLQKFAN------------------------- 345
++F G+ YL + +KN + DLW +
Sbjct: 408 SADAFKSGIVQYLQKHSYKNTKNEDLWDSMASICPTDGVKGMDGFCSRSQHSSSSSHWHQ 467
Query: 346 -NMSVTSVMDTYTRQMGFPIITVKKSGDQVTFTQQRYLSNPNASYNPDDSPFKYLWDVYI 404
+ V ++M+T+T Q GFP+IT+ G V Q+ Y+ + + YLW V +
Sbjct: 468 EGVDVKTMMNTWTLQKGFPLITITVRGRNVHMKQEHYMKGSDGA-----PDTGYLWHVPL 522
Query: 405 TMFTSSDPSHTLHTWL 420
T TS +H +L
Sbjct: 523 TFITSKSD--MVHRFL 536
Score = 182 bits (463), Expect = 4e-47
Identities = 53/90 (58%), Positives = 68/90 (75%)
Query: 629 DLIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTM 688
DL AIPDF SGAME+WGL T+RE+A+LF SS +K + MT +HELAH WFG+LVTM
Sbjct: 262 DLAAIPDFQSGAMENWGLTTYRESALLFDAEKSSASSKLGITMTVAHELAHQWFGNLVTM 321
Query: 689 GWWNDLWLNEGFASYMQYKALAKVEPTWEV 718
WWNDLWLNEGFA +M++ +++ P +V
Sbjct: 322 EWWNDLWLNEGFAKFMEFVSVSVTHPELKV 351
Score = 174 bits (443), Expect = 9e-45
Identities = 46/193 (23%), Positives = 99/193 (51%), Gaps = 5/193 (2%)
Query: 720 YIRCLLKDKLSEETWKVENKSYLEVNLKLVLNDLGCNFGAPSCLKKAADLLKNWFDSG-- 777
++ LL+D + ++TW + S E L+ L L C C+++A + W +S
Sbjct: 657 FLIRLLRDLIDKQTWT-DEGSVSERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGN 715
Query: 778 VKPEADLRGLVYRYGMENVGEEEWKKMWAKFREESNPQEQIKMLGGLSSVKEPKLLEKFL 837
+ D+ V+ G ++ E W +++K++ + E+ ++ L + + L+ L
Sbjct: 716 LSLPVDVTLAVFAVGAQS--TEGWDFLYSKYQFSLSSTEKSQIEFALCRTQNKEKLQWLL 773
Query: 838 EMAKDEKNIRSQDYFTVIVMVAGNPKGLPVAWDYVKKNWDYLVKRFGLNHRVFGRIIPSV 897
+ + I++Q++ ++ ++ NP G P+AW +++KNW+ LV++F L ++
Sbjct: 774 DESFKGDKIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGT 833
Query: 898 CGKFTTQERLDEV 910
+F+T+ RL+EV
Sbjct: 834 TNQFSTRTRLEEV 846
Score = 125 bits (315), Expect = 3e-29
Identities = 42/140 (30%), Positives = 64/140 (45%), Gaps = 3/140 (2%)
Query: 463 PWELNSRLETTVIPKMYDLYLNPYLGKKLFTGTVKINIEVTNATGYIYLHKSSLTIEETT 522
PW RL VIP YDL ++ L F GT K+ I + T I LH L I T
Sbjct: 3 PWN-KIRLPEYVIPVHYDLLIHANLTTLTFWGTTKVEITASQPTSTIILHSHHLQISRAT 61
Query: 523 VF-KGEDITPIDLLSTFDYAKNEYWVITFKETIDPGS-YVLKFKFKGNFSKKNEGFYESM 580
+ + + L ++ + E + E + G Y + + GN S+ GFY+S
Sbjct: 62 LRKGAGERLSEEPLQVLEHPRQEQIALLAPEPLLVGLPYTVVIHYAGNLSETFHGFYKST 121
Query: 581 YMNYKNHKRLIATSKFEPTY 600
Y + R++A+++FEPT
Sbjct: 122 YRTKEGELRILASTQFEPTA 141
Score = 112 bits (282), Expect = 2e-25
Identities = 32/162 (19%), Positives = 64/162 (39%), Gaps = 18/162 (11%)
Query: 909 EVLDARDRSNLLDDAFNLAESQMIEYSTTFNLMKYMSKEDHFVPWTVVYNKLSRLDDKLY 968
+ + DR++L+++AF L + +L Y+ E +P N+L + +
Sbjct: 584 TAVSSNDRASLINNAFQLVSIGKLSIEKALDLSLYLKHETEIMPVFQGLNELIPMYKLME 643
Query: 969 STEGHEDFKLSRLDDKLYSTEGHEDFKLYIRCLLKDKLSEETWKVENKSYLEVNLKLVLN 1028
+ +E FK ++ LL+D + ++TW + S E L+ L
Sbjct: 644 KRDMNEVET---------------QFKAFLIRLLRDLIDKQTWT-DEGSVSERMLRSQLL 687
Query: 1029 DLGCNFGAPSCLKKAADLLKNWFDSG--VKPEADLRGLVYRY 1068
L C C+++A + W +S + D+ V+
Sbjct: 688 LLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAV 729
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic
domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG
MES MAN; 3.08A {Homo sapiens}
Length = 967
Score = 474 bits (1221), Expect = e-151
Identities = 143/377 (37%), Positives = 198/377 (52%), Gaps = 32/377 (8%)
Query: 71 SEGPTKKSTDDQPGVNQTTVEFATTVPMSTYLVCFIVCDFDHLPSQDAKQGFPIKVYARE 130
S P K+ + + G F TTV MSTYLV +IVCDF L G + +YA
Sbjct: 234 SNMPKVKTIELEGG--LLEDHFETTVKMSTYLVAYIVCDFHSLSGFT-SSGVKVSIYASP 290
Query: 131 GQLEHMEFAQKTAIAAINFYVEYFNISYPLPKLDLIAIPDFVSGAMEHWGLVTFREAAVL 190
+ +A + ++ ++FY +YF+I YPL KLDLIAIPDF GAME+WGL+T+RE ++L
Sbjct: 291 DKRNQTHYALQASLKLLDFYEKYFDIYYPLSKLDLIAIPDFAPGAMENWGLITYRETSLL 350
Query: 191 FKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMGWWNDLWLNEGFASYMQYKALAKVEPT 250
F +SS +K V +HELAH WFG+LVTM WWND+WLNEGFA YM+ A+ P
Sbjct: 351 FDPKTSSASDKLWVTRVIAHELAHQWFGNLVTMEWWNDIWLNEGFAKYMELIAVNATYPE 410
Query: 251 WEVDTMFLTDMLHSTLQLDQTLSSHPIVQTVSNPDQITEIFDVISYQKGSSVIRMLENMM 310
+ D FL + D SS PI + P QI E+FD +SY KG+ ++ ML++ +
Sbjct: 411 LQFDDYFLNVC-FEVITKDSLNSSRPISKPAETPTQIQEMFDEVSYNKGACILNMLKDFL 469
Query: 311 GEESFAHGVTSYLNEFQFKNAETNDLWSHLQKFAN------------------------- 345
GEE F G+ YL +F ++NA+ +DLWS L
Sbjct: 470 GEEKFQKGIIQYLKKFSYRNAKNDDLWSSLSNSCLESDFTSGGVCHSDPKMTSNMLAFLG 529
Query: 346 -NMSVTSVMDTYTRQMGFPIITVKKSGDQVTFTQQRYLSNPNA-SYNPDDSPFKYLWDVY 403
N V +M T+T Q G P++ VK+ G + Q+R+L +YLW +
Sbjct: 530 ENAEVKEMMTTWTLQKGIPLLVVKQDGCSLRLQQERFLQGVFQEDPEWRALQERYLWHIP 589
Query: 404 ITMFTSSDPSHTLHTWL 420
+T TSS H L
Sbjct: 590 LTYSTSSSNVIHRH-IL 605
Score = 182 bits (463), Expect = 4e-47
Identities = 51/90 (56%), Positives = 64/90 (71%)
Query: 629 DLIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTM 688
DLIAIPDF GAME+WGL+T+RE ++LF +SS +K V +HELAH WFG+LVTM
Sbjct: 324 DLIAIPDFAPGAMENWGLITYRETSLLFDPKTSSASDKLWVTRVIAHELAHQWFGNLVTM 383
Query: 689 GWWNDLWLNEGFASYMQYKALAKVEPTWEV 718
WWND+WLNEGFA YM+ A+ P +
Sbjct: 384 EWWNDIWLNEGFAKYMELIAVNATYPELQF 413
Score = 181 bits (461), Expect = 7e-47
Identities = 54/193 (27%), Positives = 97/193 (50%), Gaps = 5/193 (2%)
Query: 720 YIRCLLKDKLSEETWKVENKSYLEVNLKLVLNDLGCNFGAPSCLKKAADLLKNWFDSGVK 779
Y+ K + ++W + S + L+ L L C+ C++KAA+L W +S K
Sbjct: 725 YLLQYFKPVIDRQSWS-DKGSVWDRMLRSALLKLACDLNHAPCIQKAAELFSQWMESSGK 783
Query: 780 PE--ADLRGLVYRYGMENVGEEEWKKMWAKFREESNPQEQIKMLGGLSSVKEPKLLEKFL 837
D+ +VY G + W + ++ + EQ K+L LS+ K + L K +
Sbjct: 784 LNIPTDVLKIVYSVGAQT--TAGWNYLLEQYELSMSSAEQNKILYALSTSKHQEKLLKLI 841
Query: 838 EMAKDEKNIRSQDYFTVIVMVAGNPKGLPVAWDYVKKNWDYLVKRFGLNHRVFGRIIPSV 897
E+ + K I++Q+ ++ +A PKG +AWD+V++NW +L+K+F L II
Sbjct: 842 ELGMEGKVIKTQNLAALLHAIARRPKGQQLAWDFVRENWTHLLKKFDLGSYDIRMIISGT 901
Query: 898 CGKFTTQERLDEV 910
F+++++L EV
Sbjct: 902 TAHFSSKDKLQEV 914
Score = 123 bits (311), Expect = 1e-28
Identities = 47/149 (31%), Positives = 68/149 (45%), Gaps = 5/149 (3%)
Query: 456 TVSNPTQPWELNSRLETTVIPKMYDLYLNPYLGKKLFTGTVKINIEVTNATGYIYLHKSS 515
+ PW+ RL + VIP YDL+++P L F + KI + V+NAT +I LH
Sbjct: 56 ATNGERFPWQ-ELRLPSVVIPLHYDLFVHPNLTSLDFVASEKIEVLVSNATQFIILHSKD 114
Query: 516 LTIEETTVFKGED---ITPIDLLSTFDYAKNEYWVITFKETIDPGS-YVLKFKFKGNFSK 571
L I T+ ED + P L Y +E + E + P Y + F+
Sbjct: 115 LEITNATLQSEEDSRYMKPGKELKVLSYPAHEQIALLVPEKLTPHLKYYVAMDFQAKLGD 174
Query: 572 KNEGFYESMYMNYKNHKRLIATSKFEPTY 600
EGFY+S Y R++A + FEPT
Sbjct: 175 GFEGFYKSTYRTLGGETRILAVTDFEPTQ 203
Score = 117 bits (294), Expect = 1e-26
Identities = 31/185 (16%), Positives = 60/185 (32%), Gaps = 21/185 (11%)
Query: 909 EVLDARDRSNLLDDAFNLAESQMIEYSTTFNLMKYMSKEDHFVPWTVVYNKLSRLDDKLY 968
+L +DR L+ D F L + + ++ Y+ E + L +
Sbjct: 652 TLLRPKDRVGLIHDVFQLVGAGRLTLDKALDMTYYLQHETSSPALLEGLSYLESFYHMMD 711
Query: 969 STEGHEDFKLSRLDDKLYSTEGHEDFKLYIRCLLKDKLSEETWKVENKSYLEVNLKLVLN 1028
+ E+ K Y+ K + ++W + S + L+ L
Sbjct: 712 RRNISDIS---------------ENLKRYLLQYFKPVIDRQSWS-DKGSVWDRMLRSALL 755
Query: 1029 DLGCNFGAPSCLKKAADLLKNWFDSGVKPE--ADLRGLVYRYVQALPRRGNELQKKENRL 1086
L C+ C++KAA+L W +S K D+ +VY + +
Sbjct: 756 KLACDLNHAPCIQKAAELFSQWMESSGKLNIPTDVLKIVYSVGA---QTTAGWNYLLEQY 812
Query: 1087 RKENT 1091
+
Sbjct: 813 ELSMS 817
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A
{Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A*
Length = 632
Score = 351 bits (903), Expect = e-108
Identities = 60/320 (18%), Positives = 114/320 (35%), Gaps = 24/320 (7%)
Query: 86 NQTTVEFATTVPMSTYLVCFIVCDFDHLPSQDAKQGFPIKVYAREGQLEHMEFAQKTAIA 145
+ F VP+ YL+ D A G VY +L+ ++ + +
Sbjct: 190 DTNIYRFEQKVPIPAYLIGIASGDLSS-----APIGPRSTVYTEPFRLKDCQWEFENDVE 244
Query: 146 AINFYVEYFNISYPLPKLD-LIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRV 204
E Y D L+ + + G ME + + + + ++
Sbjct: 245 KFIQTAEKIIFEYEWGTYDILVNVDSYPYGGMESPNMTFATPTLLAHDRSNIDVI----- 299
Query: 205 AMTTSHELAHMWFGDLVTMGWWNDLWLNEGFASYMQYKALAKVEPTWEVDTMFLTDMLHS 264
+HELAH W G+LVT WN WLNEG+ Y++ + + + L
Sbjct: 300 ----AHELAHSWSGNLVTNCSWNHFWLNEGWTVYLERRIIGAIHGEPTRHFSALIGWSDL 355
Query: 265 TLQLDQTLSSHPI---VQTVSNPDQITEIFDVISYQKGSSVIRMLENMMG-EESFAHGVT 320
+D VQ +++ + F + Y+KG +++ LE ++G + F +
Sbjct: 356 QNSIDSMKDPERFSTLVQNLNDNTDPDDAFSTVPYEKGFNLLFHLETILGGKAEFDPFIR 415
Query: 321 SYLNEFQFKNAETNDLWSHLQKFAN---NMSVTSVMDTYTRQMGFPIITVKKS--GDQVT 375
Y +F K+ +T L +F + + +T+ + G P + D V
Sbjct: 416 HYFKKFAKKSLDTFQFLDTLYEFYPEKKEILDSVDWETWLYKPGMPPRPHFITALADNVY 475
Query: 376 FTQQRYLSNPNASYNPDDSP 395
+++ +D
Sbjct: 476 QLADKWVEMAQHLKTTEDFR 495
Score = 134 bits (338), Expect = 1e-32
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 9/89 (10%)
Query: 630 LIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMG 689
L+ + + G ME + + + + ++ +HELAH W G+LVT
Sbjct: 265 LVNVDSYPYGGMESPNMTFATPTLLAHDRSNIDVI---------AHELAHSWSGNLVTNC 315
Query: 690 WWNDLWLNEGFASYMQYKALAKVEPTWEV 718
WN WLNEG+ Y++ + + +
Sbjct: 316 SWNHFWLNEGWTVYLERRIIGAIHGEPTR 344
Score = 73.3 bits (180), Expect = 2e-13
Identities = 22/153 (14%), Positives = 45/153 (29%), Gaps = 29/153 (18%)
Query: 455 STVSNPTQPWELNSRLETTVIPKMYDLYLNPYLGKKLFTGTVKINIEVT----NATGYIY 510
ST+SN DL L+ K +G+V ++ N + ++
Sbjct: 20 STLSNYKD-----------FAVLHTDLNLSVSFEKSAISGSVTFQLKKLHEGKNKSDELH 68
Query: 511 LHKSSLTIEETTVFKGEDITPIDLLSTFDYAKNEYWV---ITFKETIDPGSYVLKFKFKG 567
L S L ++E + G F + + + + ++ L +F+
Sbjct: 69 LDTSYLDVQEVHI-DGSKA-------DFQIEQRKEPLGSRLVINNASCNDNFTLNIQFRT 120
Query: 568 NFSKKNEGFYESMYMNYKNHKRLIATSKFEPTY 600
K + S+ E +
Sbjct: 121 T--DKCTALQWLNS-KQTKGGKPYVFSQLEAIH 150
>3b7s_A Leukotriene A-4 hydrolase; transition state, analogue peptide,
hydrolysis, hydrolase, leukotriene biosynthesis,
metal-binding, metalloprotease; 1.47A {Homo sapiens}
SCOP: a.118.1.7 b.98.1.1 d.92.1.13 PDB: 3b7t_A 3b7r_L*
2r59_A* 3b7u_X* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A*
3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A*
3ftz_A* 3fu0_A* 3fu3_A* 3fu5_A* ...
Length = 616
Score = 349 bits (897), Expect = e-108
Identities = 61/338 (18%), Positives = 125/338 (36%), Gaps = 26/338 (7%)
Query: 71 SEGPTKKSTDDQPGVNQTTVEFATTVPMSTYLVCFIVCDFDHLPSQDAKQGFPIKVYARE 130
T D ++ +F VP+ YL+ +V + + G V++ +
Sbjct: 176 MSAIRDGETPDPEDPSRKIYKFIQKVPIPCYLIALVVGALES-----RQIGPRTLVWSEK 230
Query: 131 GQLEHMEFAQKTAIAAINFYVEYFNISYPLPKLDLIAIP-DFVSGAMEHWGLVTFREAAV 189
Q+E + + + E Y + DL+ +P F G ME+ L +
Sbjct: 231 EQVEKSAYEFSETESMLKIA-EDLGGPYVWGQYDLLVLPPSFPYGGMENPCLTFVTPTLL 289
Query: 190 LFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMGWWNDLWLNEGFASYMQYKALAKVEP 249
K ++ +H+++H W G+LVT W+ WLNEG Y++ ++
Sbjct: 290 AGDK---------SLSNVIAHQISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFG 340
Query: 250 TWEVDTMFLTDMLHSTLQLDQTLSSHPIVQTVSNPDQI--TEIFDVISYQKGSSVIRMLE 307
L + +HP + V + I + + Y+KG +++ LE
Sbjct: 341 EKFRHFNALGGWGELQNSVKTFGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLE 400
Query: 308 NMM-GEESFAHGVTSYLNEFQFKNAETNDLWSHLQKFAN---NMSVTSVMDTYTRQMGFP 363
++ G E F + +Y+ +F +K+ T+D L + ++ + + G P
Sbjct: 401 QLLGGPEIFLGFLKAYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLP 460
Query: 364 IITVKKSGD----QVTFTQQRYLSNPNASYNPDDSPFK 397
I + +Q+ + + + + + K
Sbjct: 461 PIKPNYDMTLTNACIALSQRWITAKEDDLNSFNATDLK 498
Score = 131 bits (331), Expect = 1e-31
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 10/93 (10%)
Query: 629 DLIAIP-DFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVT 687
DL+ +P F G ME+ L + K ++ +H+++H W G+LVT
Sbjct: 263 DLLVLPPSFPYGGMENPCLTFVTPTLLAGDK---------SLSNVIAHQISHSWTGNLVT 313
Query: 688 MGWWNDLWLNEGFASYMQYKALAKVEPTWEVLY 720
W+ WLNEG Y++ ++ +
Sbjct: 314 NKTWDHFWLNEGHTVYLERHICGRLFGEKFRHF 346
Score = 77.9 bits (192), Expect = 8e-15
Identities = 18/135 (13%), Positives = 43/135 (31%), Gaps = 7/135 (5%)
Query: 468 SRLETTVIPKMYDLYLNPYLGKKLFTGTVKINIEVTNATG-YIYLHKSSLTIEETTVFKG 526
+ + K L + ++ TGT + ++ + L LTIE+ + G
Sbjct: 16 ASPASVCRTKHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKVVI-NG 74
Query: 527 EDITPIDLLSTFDYAKNEYWVITFKETIDPGS-YVLKFKFKGNFSKKNEGFYESMYMNYK 585
+++ L K I+ + V++ F+ + K+
Sbjct: 75 QEVKYA--LGERQSYKGSPMEISLPIALSKNQEIVIEISFETS--PKSSALQWLTPEQTS 130
Query: 586 NHKRLIATSKFEPTY 600
+ S+ + +
Sbjct: 131 GKEHPYLFSQCQAIH 145
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A
{Colwellia psychrerythraea}
Length = 605
Score = 336 bits (864), Expect = e-103
Identities = 74/359 (20%), Positives = 129/359 (35%), Gaps = 33/359 (9%)
Query: 71 SEGPTKKSTDDQPGVNQTTVEFATTVPMSTYLVCFIVCDFDHLPSQDAKQGFPIKVYARE 130
+ T+ F+ + YL+ V D + +YA
Sbjct: 180 MSANNEPGTE-----RDGDYFFSMPQAIPPYLIAIGVGDLEF-----KAMSHQTGIYAES 229
Query: 131 GQLEHMEFAQKTAIAAINFYVEYFNISYPLPKLDLIAIP-DFVSGAMEHWGLVTFREAAV 189
L+ A I+ + + Y + DL+ +P F G ME+ L V
Sbjct: 230 YILDAAVAEFDDTQAMIDKAEQMY-GKYRWGRYDLLMLPPSFPFGGMENPRLSFITPTVV 288
Query: 190 LFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMGWWNDLWLNEGFASYMQYKALAKVEP 249
K + +HELAH W G+LVT W DLWLNEGF SY++ + + V
Sbjct: 289 AGDK---------SLVNLIAHELAHSWSGNLVTNESWRDLWLNEGFTSYVENRIMEAVFG 339
Query: 250 TWEVDTMFL---TDMLHSTLQLDQTLSSHPIVQTVSNPDQITEIFDVISYQKGSSVIRML 306
T D+ L+LD + + I +PD + F + Y KG + L
Sbjct: 340 TDRAVMEQALGAQDLNAEILELDASDTQLYIDLKGRDPD---DAFSGVPYVKGQLFLMYL 396
Query: 307 ENMMGEESFAHGVTSYLNEFQFKNAETNDLWSHLQKF----ANNMSVTSVMDTYTRQMGF 362
E G E F V Y + F++ T++ +L+ N+ + ++ + + G
Sbjct: 397 EEKFGRERFDAFVLEYFDSHAFQSLGTDNFVKYLKANLTDKYPNIVSDNEINEWIFKAGL 456
Query: 363 PIITVKKSGDQVTFTQQRYLSNPNASYNPDDSPFKYLWDVYITM-FTSSDPSHTLHTWL 420
P + + + ++ + P W ++ + F ++ P H +
Sbjct: 457 PSYAPQPTSNAFKVIDKQINQLVTDELTLEQLPTAQ-WTLHEWLHFINNLPVDLDHQRM 514
Score = 130 bits (329), Expect = 2e-31
Identities = 33/93 (35%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
Query: 629 DLIAIP-DFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVT 687
DL+ +P F G ME+ L V K + +HELAH W G+LVT
Sbjct: 262 DLLMLPPSFPFGGMENPRLSFITPTVVAGDK---------SLVNLIAHELAHSWSGNLVT 312
Query: 688 MGWWNDLWLNEGFASYMQYKALAKVEPTWEVLY 720
W DLWLNEGF SY++ + + V T +
Sbjct: 313 NESWRDLWLNEGFTSYVENRIMEAVFGTDRAVM 345
Score = 80.2 bits (198), Expect = 1e-15
Identities = 21/153 (13%), Positives = 47/153 (30%), Gaps = 9/153 (5%)
Query: 450 SFKNDSTVSNPTQPWELNSRLETTVIPKMYDLYLNPYLGKKLFTGTVKINIE-VTNATGY 508
+ + VS T + V L LN KK +G +++++ T+
Sbjct: 4 ATHQHANVSKLTDAYTY--ANYDQVKATHVYLDLNVDFDKKSLSGFAELSLDWFTDNKAP 61
Query: 509 IYLHKSSLTIEETTVFKGEDITPIDLLSTFDYAK-NEYWVITFKETIDPGSYVLKFKFKG 567
+ L L I K + + +D AK ++ + ++ +
Sbjct: 62 LILDTRDLVIHRVMA-KNSQGQWVKV--NYDLAKRDDVLGSKLTINTPLNAKKVRVYYNS 118
Query: 568 NFSKKNEGFYESMYMNYKNHKRLIATSKFEPTY 600
+K G ++ S+ + +
Sbjct: 119 T--EKATGLQWLSAEQTAGKEKPFLFSQNQAIH 149
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding,
metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A
{Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A*
3q44_A* 3t8v_A*
Length = 889
Score = 295 bits (757), Expect = 2e-85
Identities = 76/381 (19%), Positives = 140/381 (36%), Gaps = 25/381 (6%)
Query: 71 SEGPTKKSTDDQPGVNQTTVEFATTVPMSTYLVCFIVCDFDHLPSQ----DAKQGFPIKV 126
S G + G + F YL + D HL + K+ + V
Sbjct: 160 SNGDKVNEFEIPGG--RHGARFNDPPLKPCYLFAVVAGDLKHLSATYITKYTKKKVELYV 217
Query: 127 YAREGQLEHMEFAQKTAIAAINFYVEYFNISYPLPKLDLIAIPDFVSGAMEHWGLVTFRE 186
++ E + +++A + ++ F +YF + Y L +L+L+A+ DF GAME+ GL F
Sbjct: 218 FSEEKYVSKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNVGAMENKGLNIFNA 277
Query: 187 AAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMGWWNDLWLNEGFASYMQYKALAK 246
++L K +S + R+ HE H + G+ VT+ W L L EG + + +
Sbjct: 278 NSLLASKKNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVHRENLFSEE 337
Query: 247 VEPTWEVDTMFLTDMLHSTLQLDQTLSSHPIVQTVSNPDQITEIFDVISYQKGSSVIRML 306
+ T + + D + SHPI + + + Y KGS V+RM
Sbjct: 338 MTKTVTTRLSHVDLLRSVQFLEDSSPLSHPI--RPESYVSMENFYTTTVYDKGSEVMRMY 395
Query: 307 ENMMGEESFAHGVTSYLNEFQFKNAETNDLWSHLQKFANNMSVTS-----VMDTYTRQMG 361
++GEE + G Y+ + A D +++ + + Q G
Sbjct: 396 LTILGEEYYKKGFDIYIKKNDGNTATCEDFNYAMEQAYKMKKADNSANLNQYLLWFSQSG 455
Query: 362 FPIITVKKSGD----QVTFTQQRYLSNPNASYNPDDSPFKYLWDVYITMFTSSDPSHTLH 417
P ++ K + D Q + +Y + P + + + + +
Sbjct: 456 TPHVSFKYNYDAEKKQYSIHVNQYT--KPDENQKEKKPL--FIPISVGLINPENGKEMIS 511
Query: 418 TWLYRNMSEDCRTYQTILFED 438
E T +F +
Sbjct: 512 QTTLELTKES----DTFVFNN 528
Score = 113 bits (283), Expect = 2e-25
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 629 DLIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTM 688
+L+A+ DF GAME+ GL F ++L K +S + R+ HE H + G+ VT+
Sbjct: 255 NLVAVSDFNVGAMENKGLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQYTGNRVTL 314
Query: 689 GWWNDLWLNEGFASYMQYKALAKVEPTW 716
W L L EG + + ++ T
Sbjct: 315 RDWFQLTLKEGLTVHRENLFSEEMTKTV 342
Score = 55.3 bits (133), Expect = 1e-07
Identities = 16/138 (11%), Positives = 41/138 (29%), Gaps = 19/138 (13%)
Query: 472 TTVIPKMYDLYLNPYLGKKLFTGTVKINIEVTNATGYIYLHKSSLTIEETTVFKGEDITP 531
+ I L +N + + + + ++I N + L I E ++ + +
Sbjct: 12 SGFIINQVTLNINIHDQETIVRSVLDMDISKHNVGEDLVFDGVGLKINEISI-NNKKLVE 70
Query: 532 IDLLSTFDYAKNEYWVITFKETIDPGSYVLKFKFKGNFSKKNEGFYESMYMNYKNHKRLI 591
+ + Y + + ++ + + G Y+S +
Sbjct: 71 GE---EYTYDNEFLTIFSKFVPKSKFAFSSEVIIHPETNYALTGLYKSKNI--------- 118
Query: 592 ATSKFEP------TYLWD 603
S+ E T+ D
Sbjct: 119 IVSQCEATGFRRITFFID 136
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2,
structural genomics, protein structure initiative; 2.05A
{Neisseria meningitidis}
Length = 867
Score = 267 bits (683), Expect = 1e-75
Identities = 73/404 (18%), Positives = 145/404 (35%), Gaps = 18/404 (4%)
Query: 71 SEGPTKKSTDDQPGVNQTTVEFATTVPMSTYLVCFIVCDFDHLPSQ---DAKQGFPIKVY 127
S G + G + V++ +YL + D + + I+ Y
Sbjct: 153 SNGNKIDGGEFSDG--RHWVKWEDPFSKPSYLFALVAGDLAVTEDYFTTMSGRNVKIEFY 210
Query: 128 AREGQLEHMEFAQKTAIAAINFYVEYFNISYPLPKLDLIAIPDFVSGAMEHWGLVTFREA 187
E + FA ++ A+ + F + Y L ++A+ DF GAME+ GL F
Sbjct: 211 TTEADKPKVGFAVESLKNAMKWDETRFGLEYDLDIFMVVAVGDFNMGAMENKGLNIFNTK 270
Query: 188 AVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMGWWNDLWLNEGFASYMQYKALAKV 247
VL +++ + + + HE H W G+ VT W L L EG + +
Sbjct: 271 FVLADSRTATDTDFEGIESVVGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSGDR 330
Query: 248 EPTWEVDTMFLTDMLHSTLQLDQTLSSHPIVQTVSNPDQITEIFDVISYQKGSSVIRMLE 307
+ + D ++HP+ ++ +++ + + Y+KG+ V+RM
Sbjct: 331 ASRAVRRIENIRLLRQHQFPEDAGPTAHPVR--PASYEEMNNFYTMTVYEKGAEVVRMYH 388
Query: 308 NMMGEESFAHGVTSYLNEFQFKNAETNDLWSHLQKFANNMSVTSVMDTYTRQMGFPIITV 367
++GEE F G+ Y + +D + + AN +++ + Q G P++
Sbjct: 389 TLLGEEGFQKGMKLYFQRHDGQAVTCDDFRAAMAD-ANGINL-DQFALWYSQAGTPVLEA 446
Query: 368 KKS--GDQVTFTQQRYLSNPNASYNPDDSPFKYLWDVYITMFTSSDPSHTLHT---WLYR 422
+ + T ++ + P D P + V + + + +
Sbjct: 447 EGRLKNNIFELTVKQTV--PPTPDMTDKQPM--MIPVKVGLLNRNGEAVAFDYQGKRATE 502
Query: 423 NMSEDCRTYQTILFEDCVRESGSTAPKSFKNDSTVSNPTQPWEL 466
+ QT L E + + F ++ P +L
Sbjct: 503 AVLLLTEAEQTFLLEGVTEAVVPSLLRGFSAPVHLNYPYSDDDL 546
Score = 95.3 bits (237), Expect = 4e-20
Identities = 24/90 (26%), Positives = 37/90 (41%)
Query: 629 DLIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTM 688
++A+ DF GAME+ GL F VL +++ + + + HE H W G+ VT
Sbjct: 247 MVVAVGDFNMGAMENKGLNIFNTKFVLADSRTATDTDFEGIESVVGHEYFHNWTGNRVTC 306
Query: 689 GWWNDLWLNEGFASYMQYKALAKVEPTWEV 718
W L L EG + +
Sbjct: 307 RDWFQLSLKEGLTVFRDQEFSGDRASRAVR 336
Score = 33.3 bits (76), Expect = 0.54
Identities = 15/130 (11%), Positives = 34/130 (26%), Gaps = 26/130 (20%)
Query: 480 DLYLNPYLGKKLFTGTVKINIEVTNATGYIYLHKSSLTIEETTVFKGEDITPIDLLSTFD 539
L+ + + ++ +E + L S + + G D
Sbjct: 20 KTDLHFDINEPQTVVKSRLTVEPQRVGEPLVLD-GSAKLLSVKI-NGAAA---------D 68
Query: 540 YAKNEYWVITFKETIDPGSYVLKFKFKGNFSKKNEGFYESMYMNYKNHKRLIATSKFEP- 598
Y + + + ++ + +K G Y S ++ EP
Sbjct: 69 YVLEGETLTIAGVPSERFTVEVETEILPAENKSLMGLYASGGN---------LFTQCEPE 119
Query: 599 -----TYLWD 603
T+ D
Sbjct: 120 GFRKITFYID 129
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal
membrane, metal-binding, metalloprotease; HET: PHE;
1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A*
2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A
2dq6_A 2dqm_A* 2zxg_A*
Length = 891
Score = 261 bits (667), Expect = 2e-73
Identities = 77/357 (21%), Positives = 140/357 (39%), Gaps = 21/357 (5%)
Query: 71 SEGPTKKSTDDQPGVNQTTVEFATTVPMSTYLVCFIVCDFDHLPSQ---DAKQGFPIKVY 127
S G + + G + V++ P YL + DFD L + + +++Y
Sbjct: 178 SNGNRVAQGELENG--RHWVQWQDPFPKPCYLFALVAGDFDVLRDTFTTRSGREVALELY 235
Query: 128 AREGQLEHMEFAQKTAIAAINFYVEYFNISYPLPKLDLIAIPDFVSGAMEHWGLVTFREA 187
G L+ +A + ++ + E F + Y L ++A+ F GAME+ GL F
Sbjct: 236 VDRGNLDRAPWAMTSLKNSMKWDEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSK 295
Query: 188 AVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMGWWNDLWLNEGFASYMQYKALAKV 247
VL + +++ + + HE H W G+ VT W L L EG + + + +
Sbjct: 296 YVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDL 355
Query: 248 EPTWEVDTMFLTDMLHSTLQLDQTLSSHPIVQTVSNPDQITEIFDVISYQKGSSVIRMLE 307
+ M D + +HPI ++ + + Y+KG+ VIRM+
Sbjct: 356 GSRAVNRINNVRTMRGLQFAEDASPMAHPIR--PDMVIEMNNFYTLTVYEKGAEVIRMIH 413
Query: 308 NMMGEESFAHGVTSYLNEFQFKNAETNDLWSHLQKFANNMSVTSVMDTYTRQMGFPIITV 367
++GEE+F G+ Y A +D ++ A+N+ ++ + Q G PI+TV
Sbjct: 414 TLLGEENFQKGMQLYFERHDGSAATCDDFVQAMED-ASNVDLSH-FRRWYSQSGTPIVTV 471
Query: 368 KKSGD------QVTFTQQRYLSNPNASYNPDDSPFKYLWDVYITMFTSSDPSHTLHT 418
K + +T +Q P + P I ++ + L
Sbjct: 472 KDDYNPETEQYTLTISQ----RTPATPDQAEKQPL--HIPFAIELYDNEGKVIPLQK 522
Score = 96.9 bits (241), Expect = 1e-20
Identities = 23/89 (25%), Positives = 38/89 (42%)
Query: 629 DLIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTM 688
++A+ F GAME+ GL F VL + +++ + + HE H W G+ VT
Sbjct: 272 MIVAVDFFNMGAMENKGLNIFNSKYVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTC 331
Query: 689 GWWNDLWLNEGFASYMQYKALAKVEPTWE 717
W L L EG + + + +
Sbjct: 332 RDWFQLSLKEGLTVFRDQEFSSDLGSRAV 360
Score = 30.3 bits (68), Expect = 4.0
Identities = 16/131 (12%), Positives = 36/131 (27%), Gaps = 26/131 (19%)
Query: 479 YDLYLNPYLGKKLFTGTVKINIEVTNATGYIYLHKSSLTIEETTVFKGEDITPIDLLSTF 538
DL + K + T + + + + L+ L + + E T +
Sbjct: 44 IDLTFDLDAQKTVVTAVSQA-VRHGASDAPLRLNGEDLKLVSVHI-NDEPWTA------W 95
Query: 539 DYAKNEYWVITFKETIDPGSYVLKFKFKGNFSKKNEGFYESMYMNYKNHKRLIATSKFEP 598
+ + + + + + + EG Y+S ++ E
Sbjct: 96 KEEEGA---LVISNLPERFTLKIINEISPAANTALEGLYQSGDA---------LCTQCEA 143
Query: 599 ------TYLWD 603
TY D
Sbjct: 144 EGFRHITYYLD 154
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A
{Homo sapiens}
Length = 419
Score = 179 bits (455), Expect = 5e-49
Identities = 46/193 (23%), Positives = 98/193 (50%), Gaps = 5/193 (2%)
Query: 720 YIRCLLKDKLSEETWKVENKSYLEVNLKLVLNDLGCNFGAPSCLKKAADLLKNWFDSG-- 777
++ LL+D + ++TW + S E L+ L L C C+++A + W +S
Sbjct: 174 FLIRLLRDLIDKQTWT-DEGSVSERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGN 232
Query: 778 VKPEADLRGLVYRYGMENVGEEEWKKMWAKFREESNPQEQIKMLGGLSSVKEPKLLEKFL 837
+ D+ V+ G + E W +++K++ + E+ ++ L + + L+ L
Sbjct: 233 LSLPVDVTLAVFAVGAQ--STEGWDFLYSKYQFSLSSTEKSQIEFALCRTQNKEKLQWLL 290
Query: 838 EMAKDEKNIRSQDYFTVIVMVAGNPKGLPVAWDYVKKNWDYLVKRFGLNHRVFGRIIPSV 897
+ + I++Q++ ++ ++ NP G P+AW +++KNW+ LV++F L ++
Sbjct: 291 DESFKGDKIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGT 350
Query: 898 CGKFTTQERLDEV 910
+F+T+ RL+EV
Sbjct: 351 TNQFSTRTRLEEV 363
Score = 114 bits (288), Expect = 4e-27
Identities = 32/162 (19%), Positives = 64/162 (39%), Gaps = 18/162 (11%)
Query: 909 EVLDARDRSNLLDDAFNLAESQMIEYSTTFNLMKYMSKEDHFVPWTVVYNKLSRLDDKLY 968
+ + DR++L+++AF L + +L Y+ E +P N+L + +
Sbjct: 101 TAVSSNDRASLINNAFQLVSIGKLSIEKALDLSLYLKHETEIMPVFQGLNELIPMYKLME 160
Query: 969 STEGHEDFKLSRLDDKLYSTEGHEDFKLYIRCLLKDKLSEETWKVENKSYLEVNLKLVLN 1028
+ +E FK ++ LL+D + ++TW + S E L+ L
Sbjct: 161 KRDMNEVET---------------QFKAFLIRLLRDLIDKQTWT-DEGSVSERMLRSQLL 204
Query: 1029 DLGCNFGAPSCLKKAADLLKNWFDSG--VKPEADLRGLVYRY 1068
L C C+++A + W +S + D+ V+
Sbjct: 205 LLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAV 246
Score = 58.3 bits (141), Expect = 7e-09
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
Query: 361 GFPIITVKKSGDQVTFTQQRYLSNPNASYNPDDSPFKYLWDVYITMFTSSDPSHTLHTWL 420
GFP+IT+ G V Q+ Y+ + + YLW V +T TS +H +L
Sbjct: 1 GFPLITITVRGRNVHMKQEHYMKGSDGA-----PDTGYLWHVPLTFITSKSD--MVHRFL 53
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 64.1 bits (155), Expect = 2e-10
Identities = 89/546 (16%), Positives = 175/546 (32%), Gaps = 152/546 (27%)
Query: 577 YESMYMNYKNHKRLIATSKFEPTYLWDVYITMFTSSDPSHTLHTWLYRNMSEDLIAIPDF 636
+E+ Y+ L S FE ++ + F D + L + + +I D
Sbjct: 9 FETGEHQYQYKDIL---SVFEDAFVDN-----FDCKDVQDMPKSILSKEEIDHIIMSKDA 60
Query: 637 VSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGD----------LV 686
VSG T R L K + + + + + + ++
Sbjct: 61 VSG--------TLRLFWTLLSKQEEMV----QKFVEEVLRINYKFLMSPIKTEQRQPSMM 108
Query: 687 TMGW-------WNDLWLNEGFASYMQYKALAKVEPTWEVLYIRCLLKDKLSEETWKVENK 739
T + +ND N+ FA Y +++++P + L+ L E
Sbjct: 109 TRMYIEQRDRLYND---NQVFAKY----NVSRLQPYLK-------LRQALLE-------- 146
Query: 740 SYLEVNLKLVLN-DLGCNFGAPSCLKKAADLLKNWFDSGVKPEADLRGLVYRYGMENVGE 798
L ++++ LG G + + A D+ V+ + D + ++
Sbjct: 147 --LRPAKNVLIDGVLGS--GK-TWV--ALDVCL---SYKVQCKMDFK--IF--------- 185
Query: 799 EEWKKMWAKFREESNPQEQIKMLGGLSSVKEPKLLEKFLEMAKDEKNIRS-QDYFTVIVM 857
W + ++P+ ++ML L +P + + + I S Q ++
Sbjct: 186 ------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 858 VAGNPKGLPV---AWDYVKKNWDYLVKRFGLNHRV-----FGRIIPSVCGKFTTQERLDE 909
L V + K W+ F L+ ++ F ++ + TT LD
Sbjct: 240 SKPYENCLLVLLNVQN--AKAWNA----FNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 910 V---LDARDRSNLLDDAFNLAESQM-IEYSTTFNLMKYM---SKEDHFVPW----TVVYN 958
L + +LL + + E TT + S D W V +
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353
Query: 959 KLSRLD----DKLYSTEGHEDFK---------------LSRL-DDKLYSTEGHEDFKLYI 998
KL+ + + L E + F LS + D + S KL+
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 999 RCLLKDKLSEETW-----------KVENKSYLEVNLKLVLNDLGCNFGAPSCLKKAADLL 1047
L++ + E T K+EN+ L + +++ ++ P DL+
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALH---RSIVD----HYNIPKTFDS-DDLI 465
Query: 1048 KNWFDS 1053
+ D
Sbjct: 466 PPYLDQ 471
Score = 49.1 bits (116), Expect = 8e-06
Identities = 87/634 (13%), Positives = 166/634 (26%), Gaps = 223/634 (35%)
Query: 240 QYKALAKV-EPTW--EVDTMFLTDMLHSTL---QLDQTLSSHPIVQTVSNPDQITEIFDV 293
QYK + V E + D + DM S L ++D I+ + +F
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH------IIMSKDAVSGTLRLFWT 70
Query: 294 ISYQKGSSVIRMLENMMGEESFAHGVTSYLNEFQFKNAET-------NDLWSHLQKFANN 346
+ ++ V + +E ++ ++ ++ E + + T + L++ Q FA
Sbjct: 71 LLSKQEEMVQKFVEEVL-RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA-K 128
Query: 347 MSVT-------------------------------SVM-------DTYTRQMGFPI--IT 366
+V+ + + +M F I +
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 367 VKK--SGDQVTFTQQR--------YLSNPNASYNP------------------------- 391
+K S + V Q+ + S + S N
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 392 --DDSPFKYLWDVYI---------TMFTSSDPS--------HTLHTWL---YRNMSED-- 427
+ + + + T+ T H L ++ D
Sbjct: 249 VLLN-----VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 428 ---CRTYQTILFEDCVRESGSTAP-------KSFKNDSTVSNPTQPWE-LNSRLETTVIP 476
Y +D RE +T P +S ++ W+ +N TT+I
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG---LATWDNWKHVNCDKLTTIIE 360
Query: 477 KMYDLYLNPYLGKKLFTGTVKINIEVTNATGYIYLHKSSLTIEETTVF-KGEDITPIDLL 535
+ L P +K+F + +VF I P LL
Sbjct: 361 SSLN-VLEPAEYRKMF--------------------------DRLSVFPPSAHI-PTILL 392
Query: 536 STFDYAKNEYWVITFKETIDPGSYVLKFKFKGNFSKKNEGF---YESMYMNYKN------ 586
S W D V K K+ + S+Y+ K
Sbjct: 393 SL-------IW--FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443
Query: 587 --HKRLI----ATSKFEPTYL----WDVYITMFTS---SDPSHTLHTWLYRNMSEDLIAI 633
H+ ++ F+ L D Y + H L+R + D
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF--- 500
Query: 634 PDFVSGAMEHWGLVTFREAAVL-----FKKGSSSIVNKKRV-----------AMTTSHEL 677
F+ + H ++L K I + L
Sbjct: 501 -RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL 559
Query: 678 AHMWFGDLVTMGWWNDLWLNEGFASYMQYKALAK 711
+ DL+ + + +E +K + +
Sbjct: 560 ICSKYTDLLRIALMAE---DEAIF-EEAHKQVQR 589
Score = 49.1 bits (116), Expect = 1e-05
Identities = 67/498 (13%), Positives = 137/498 (27%), Gaps = 163/498 (32%)
Query: 226 WNDLWLNEGFASYMQY---------KALAKVEPTWEVDTMFLTDMLH-------STLQLD 269
+ND N+ FA Y +AL ++ P V ++ + + LD
Sbjct: 120 YND---NQVFAKYNVSRLQPYLKLRQALLELRPAKNV-------LIDGVLGSGKTWVALD 169
Query: 270 QTLSSHPIVQ---------TVSN---PDQITEIFDVISYQKGSSVIRMLENMMGEESFAH 317
S+ + + N P+ + E+ + YQ + ++ + H
Sbjct: 170 -VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 318 GVTSYLNEFQFKNAETN------DLWS--HLQKFAN---------NMSVTSVMDTYTRQM 360
+ + L N ++ + F VT + T
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT- 287
Query: 361 GFPIITVKKSGDQVTFTQQRYLSNPNASYNPDD--------SPFKYLWDVYITMFTSS-- 410
I++ +T + + L P D +P + +++ S
Sbjct: 288 ---HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR------LSIIAESIR 338
Query: 411 DPSHTLHTWLYRNMSEDCRTYQTIL-----------FEDCVRESGSTAPKSFKNDSTVSN 459
D T W + N + ++ L F+ F + +
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS---------VFPPSAHI-- 387
Query: 460 PTQP----WELNSRLETTVI-------------PK-----MYDLYL-------------- 483
PT W + + V+ PK + +YL
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447
Query: 484 ---NPYLGKKLFTGTVKINIEVTNATGYIYLH-----KSSLTIEETTVFKGEDITPIDLL 535
+ Y K F ++ Y Y H K+ E T+F+ +
Sbjct: 448 SIVDHYNIPKTFDSD---DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR-------MVF 497
Query: 536 STFDY--AKNEYWVITFKETIDPGSYVLKFKFKGNFSKKNEGFYESMYMNYKNHKRLIAT 593
F + K + + + + + + KF + N+ YE + +
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD------- 550
Query: 594 SKFEPTYLWDVYITMFTS 611
F P ++ + +T
Sbjct: 551 --FLPKIEENLICSKYTD 566
Score = 39.5 bits (91), Expect = 0.007
Identities = 61/441 (13%), Positives = 120/441 (27%), Gaps = 156/441 (35%)
Query: 6 LKSQRTPKLVTLL----VCTSAVL--F-VACVLSVTLLLLTRYISYHSSQPVRTHETWVR 58
LKS+ LL V + F ++C +LL TR+ V
Sbjct: 238 LKSKPYEN--CLLVLLNVQNAKAWNAFNLSC----KILLTTRFKQ-------------VT 278
Query: 59 RSFDGGGGASGASEGPTKKSTDDQPGVNQTTVE-FATTVPMSTYLVCFIVCDFDHLPSQD 117
+ + + T D+ ++ C LP +
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDE------VKSLLLK----------YLDCRPQDLPRE- 321
Query: 118 AKQGFP--IKVYA---REG-----QLEHMEFAQKTAI--AAINF--------YVEYFNIS 157
P + + A R+G +H+ + T I +++N + ++
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV- 380
Query: 158 YPLPKLDLIAIPDFVSGAMEHWGLVTFREAAVLFKK-GSSSIVNKKRVAMTTS-HELAHM 215
P IP + + W V + V+ K S+V K+ T S +
Sbjct: 381 --FPP-S-AHIPTILLSLI--WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI--- 431
Query: 216 WFGDLVTMGWWNDLWLNEGFASYMQYKALAKVEPTWEVDTMFLTDMLHSTLQLDQTLSSH 275
Y++ K + E LH ++ + +
Sbjct: 432 ----------------------YLELKVKLENEYA-----------LHRSI-----VDHY 453
Query: 276 PIVQTVSNPDQITE-----IFDVISYQKGSSVIRMLENMMGEESFAHGVTSYLNEFQF-- 328
I +T + D I + I + L+N+ E +L+ F+F
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHH--------LKNIEHPERMTLFRMVFLD-FRFLE 504
Query: 329 -----------KNAETNDLWSHLQKFANNMSVTSVMDTYTRQMG----F-----PIITVK 368
+ + L+ + + Y R + F +
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDND--PKYERLVNAILDFLPKIEENLICS 562
Query: 369 KSGDQVTFTQQRYLSNPNASY 389
K D + + L + +
Sbjct: 563 KYTDLL----RIALMAEDEAI 579
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.1 bits (140), Expect = 2e-08
Identities = 100/595 (16%), Positives = 175/595 (29%), Gaps = 214/595 (35%)
Query: 445 STAPKSFKNDS---TVSNPTQPWELNSRLE---TTVIPKMYDLYLN---P-----YLGKK 490
ST P + + S + PT + + S+L+ ++P+ + + P +GK
Sbjct: 5 STRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK- 63
Query: 491 LFTGTVKINIEVTNATGYIYLHKSSLTIEETTVFKGEDI----------TPIDLLSTFDY 540
F G V +E + + + LT E +G DI L+ T +
Sbjct: 64 -FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL 122
Query: 541 AKNEYW--VITFKETIDPGS---------------YVLKFKF--KGNFSKKNEGFYE--- 578
KN Y I K D S + F +GN + ++E
Sbjct: 123 IKN-YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI---FGGQGN----TDDYFEELR 174
Query: 579 SMYMNYKNH-KRLIATSKFEPTYLWDVYITMFTSSDPSHT----LHTWLYRNMS-----E 628
+Y Y LI S L ++ I ++ T + WL N S +
Sbjct: 175 DLYQTYHVLVGDLIKFSA---ETLSEL-IRTTLDAEKVFTQGLNILEWL-ENPSNTPDKD 229
Query: 629 DLIAIPDFVSG------AMEHWGLVTFREAAV----LFKKGSSSIVNKKRV------AMT 672
L++IP +S + H+ +VT + L + + + + A T
Sbjct: 230 YLLSIP--ISCPLIGVIQLAHY-VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET 286
Query: 673 TS----HELAHM------WFG------------------DLVTMGWWNDLWLNEGFASYM 704
S + G D + EG S M
Sbjct: 287 DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN--------EGVPSPM 338
Query: 705 QYKALAKVEPTWEVLYIRCLLKDKLSEETWKVENKSYLEVNLKLVLNDLGCNFGAPSCLK 764
L I L ++++ ++ N +L ++ ++
Sbjct: 339 --------------LSISNLTQEQV-QDYVNKTNS-HLPAGKQVEIS------------- 369
Query: 765 KAADLLKNWFD----SGVKPEADLRGLVYRYGMENVGEEEWKKMWAKFREESNP----QE 816
L N SG P L GL R+ P Q
Sbjct: 370 -----LVNGAKNLVVSG--PPQSLYGLN-----------------LTLRKAKAPSGLDQS 405
Query: 817 QIKMLGGLSSVKEPKLLEKFLEMA--------KDEKNIRSQDYFTVIVMVAGNPKGLPVA 868
+I S ++ K +FL +A ++ ++D V +PV
Sbjct: 406 RIPF-----SERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV- 459
Query: 869 WDYVKKNWDYLVKRFGLNHRVF-GRIIPSVCGKFTTQERLD-EVLDARDRSNLLD 921
+D +D G + RV G I + + E +++LD
Sbjct: 460 YD----TFD------GSDLRVLSGSISERIVDCIIR-LPVKWETTTQFKATHILD 503
Score = 47.4 bits (112), Expect = 3e-05
Identities = 98/659 (14%), Positives = 195/659 (29%), Gaps = 240/659 (36%)
Query: 85 VNQTTVEFATTVPMSTYLVCFIVCD-F-DHLPS------QDAKQGFPIKVYAR-----EG 131
++ ++E VP +++ + + + F LP D + P ++ +
Sbjct: 11 LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSS 70
Query: 132 QLEHMEFAQKTAIAAINFYVEYFNISYPLPKLD-------LIAIPDFVSGAMEHWGLVTF 184
+E + Q + +N + F Y L D L+ D + + +
Sbjct: 71 LVEPSKVGQFDQV--LNLCLTEFENCY-LEGNDIHALAAKLLQENDTTLVKTKEL-IKNY 126
Query: 185 REAAVL----FKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMGWWN-DLWLNEGFASYM 239
A ++ F K S+S + R + +L + FG G N D + E
Sbjct: 127 ITARIMAKRPFDKKSNSALF--RAVGEGNAQLVAI-FG-----GQGNTDDYFEE------ 172
Query: 240 QYKALAKVEPTWEVDTMFLTDMLHSTLQLDQTLSSHPIVQTVSNPDQITEIFDVISYQKG 299
L + ++ + + D++ + + L + +++ + +G
Sbjct: 173 ----LRDL---YQTYHVLVGDLIKFSAETLSELIRTT-----LDAEKV--------FTQG 212
Query: 300 SSVIRMLENMMGEESFAHGVTSYLNEFQFKNAETNDLWSHLQKFANNMSVT-SVMDTYTR 358
+++ LEN S YL S+ S
Sbjct: 213 LNILEWLEN----PSNTPD-KDYLL-----------------------SIPIS------- 237
Query: 359 QMGFPIITVKKSGDQVTFTQ-QRYLSNPNAS-YNPDDSPFKYL-------WDVYITMFTS 409
P+I V Q Y+ + P + YL + + +
Sbjct: 238 ---CPLIGV---------IQLAHYVVTAKLLGFTPGEL-RSYLKGATGHSQGLVTAVAIA 284
Query: 410 -SDPSHTLHTW--LYRNMSED--------CRTYQTI--------LFEDCVRESGSTAPKS 450
+D +W + ++ + R Y+ + ED + E+ P
Sbjct: 285 ETD------SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL-ENNEGVP-- 335
Query: 451 FKNDS---TVSNPTQPWELNSRLETTVIPKMYDLYLNPYLGKKLFTGTVKINIEVTNA-- 505
S ++SN TQ ++ + T N +L ++ I + N
Sbjct: 336 ----SPMLSISNLTQE-QVQDYVNKT----------NSHLP-----AGKQVEISLVNGAK 375
Query: 506 ----TGY-IYLHKSSLTIEETTVFKGEDITPIDLLSTFDYAKNEYWVITFKETIDPGSYV 560
+G L+ +LT+ + G D + I P S
Sbjct: 376 NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI-----------------------PFS-- 410
Query: 561 LKFKFKGNFSKKNEGF------YESMYMNYKNHKRLIATSKFEPTYLWD-------VYIT 607
+ K FS + F + S + LI + ++ VY T
Sbjct: 411 ---ERKLKFSNR---FLPVASPFHSHLL--VPASDLINKDLVKNNVSFNAKDIQIPVYDT 462
Query: 608 MFTSSDPSHTLHTWLYRNMSEDLIA--IPDFVSGAMEHWGLVTFREA--AVLFKKGSSS 662
F SD R +S + + + + W T +A + F G +S
Sbjct: 463 -FDGSDL---------RVLSGSISERIVDCIIRLPV-KWETTTQFKATHILDFGPGGAS 510
Score = 39.3 bits (91), Expect = 0.009
Identities = 39/184 (21%), Positives = 59/184 (32%), Gaps = 46/184 (25%)
Query: 931 MIEYST-TFNLMKYMSKEDHF-VPWTVVYNKLSRLDDKLYS-----TEGHEDFKLSRLDD 983
M YST L + S E VP T + S+L ++ TEG DD
Sbjct: 1 MDAYSTRPLTL-SHGSLEHVLLVP-TASFFIASQLQEQFNKILPEPTEGFAA------DD 52
Query: 984 KLYST-EGHEDFKLYIRCLLKDKLSEETWKVENKSYLEVNLKLVLNDLGCNFGAPSCLKK 1042
+ + E F Y+ L E + + + +V L L L + + L+
Sbjct: 53 EPTTPAELVGKFLGYV-----SSLVEPS---KVGQFDQV-LNLCLTEFENCY-----LEG 98
Query: 1043 ------AADLLKNWFDSGVKPEADLRGLVYRYVQALPRRGNELQKKEN-RL-----RKEN 1090
AA LL+ + L+ Y+ A KK N L
Sbjct: 99 NDIHALAAKLLQ----ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA 154
Query: 1091 TIYA 1094
+ A
Sbjct: 155 QLVA 158
Score = 36.2 bits (83), Expect = 0.086
Identities = 78/502 (15%), Positives = 138/502 (27%), Gaps = 219/502 (43%)
Query: 12 PKLVTLLVCTSAVLFVACVLSVTLLLLTRYISYHSSQPVRTH----ETWVRRSFDGGGGA 67
LV L+ SA TL L R + ++ V T W+
Sbjct: 181 HVLVGDLIKFSAE---------TLSELIR--TTLDAEKVFTQGLNILEWL---------- 219
Query: 68 SGASEGPTKKSTDDQPGVNQTTVEFATTVPMS------TYLVCFIVCDFDHLPSQDAKQG 121
E P + P ++ ++P+S L ++V
Sbjct: 220 ----ENP-----SNTPDK-----DYLLSIPISCPLIGVIQLAHYVV-------------- 251
Query: 122 FPIKVYAREGQLEHMEFAQKTAIAAINFYVEYFNISYPLPKLDLI-AIPDFVSGAMEHWG 180
A+ E + + + L+ A+ ++ W
Sbjct: 252 -----TAKLLGFTPGELRSY--LKGATGHSQ-----------GLVTAV--AIAETDS-WE 290
Query: 181 LVTFREAA-----VLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMGWWNDLWLNEGF 235
+F + VLF G TS + + D + EG
Sbjct: 291 --SFFVSVRKAITVLFFIGVRC----YEAYPNTSLPPSIL--EDSLENN--------EGV 334
Query: 236 ASYMQYKALAKVEPTWEVDTMFLTDMLHSTLQ--LDQTLSSHPIVQTVSNPDQITEIFDV 293
S M L+ ++++ +Q +++T S P + V
Sbjct: 335 PSPM----LS------------ISNLTQEQVQDYVNKTNSHLPAGKQVE----------- 367
Query: 294 ISYQKGSSVIRMLENMMGEESFAHGVTSYLNEFQFKNAETNDLWS---HLQKFANNMSVT 350
IS L N G ++ V+ L+ L+K
Sbjct: 368 IS----------LVN--GAKNLV--VSGP----------PQSLYGLNLTLRK-------- 395
Query: 351 SVMDTYTRQMGFPIITVKKSGDQ--VTFTQQ------RYLSNPNASYNPDDSPF--KYLW 400
DQ + F+++ R+L P SPF L
Sbjct: 396 --------------AKAPSGLDQSRIPFSERKLKFSNRFL--------PVASPFHSHLL- 432
Query: 401 DVYITMFTSSDPSHTLHTWLYRN----MSEDCRT--YQTILFEDCVRE-SGSTAPKSFKN 453
S ++ L +N ++D + Y T D +R SGS + +
Sbjct: 433 ---------VPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD-LRVLSGSISERIV-- 480
Query: 454 DSTVSNPTQPWELNSRLETTVI 475
D + P + WE ++ + T I
Sbjct: 481 DCIIRLPVK-WETTTQFKATHI 501
Score = 32.3 bits (73), Expect = 1.2
Identities = 38/195 (19%), Positives = 62/195 (31%), Gaps = 73/195 (37%)
Query: 130 EGQLEHMEFAQKTAIAAINFYVEY--FNISYPLPKLDLIAIPDFVSG-------AMEHWG 180
+G L +F Q A+ +E F L LI +G A+
Sbjct: 1723 KGLLSATQFTQ----PAL-TLMEKAAFED---LKSKGLIPADATFAGHSLGEYAALASLA 1774
Query: 181 ----------LVTFR-----EAAVLFKKGSSSI----VNKKRVAMTTSHELAHMWFGDLV 221
+V +R A + G S+ +N RVA + S E A + + V
Sbjct: 1775 DVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQE-ALQYVVERV 1833
Query: 222 --TMGWW----NDLWLNEGFASYMQY------KALAKVEPTWEVDTMFLTDMLHS----- 264
GW N N QY +AL +T++L+
Sbjct: 1834 GKRTGWLVEIVNY---N---VENQQYVAAGDLRALDT-----------VTNVLNFIKLQK 1876
Query: 265 --TLQLDQTLSSHPI 277
++L ++LS +
Sbjct: 1877 IDIIELQKSLSLEEV 1891
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology,
northeast structural genom consortium, NESG,
peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Length = 597
Score = 41.5 bits (96), Expect = 0.001
Identities = 24/132 (18%), Positives = 40/132 (30%), Gaps = 18/132 (13%)
Query: 202 KRVAMTTSHELAHMWFG-----------DLVTMGWWNDLWLNEGFASYMQYKALAK---- 246
+ HE H W L + LW EG SY L
Sbjct: 265 QTFLSLCCHEYFHSWNIKTLKPKAFLPYQLEKESYTEQLWFYEGMTSYFDDYLLHTSGII 324
Query: 247 -VEPTWEVDTMFLTDMLHSTLQLDQTL--SSHPIVQTVSNPDQITEIFDVISYQKGSSVI 303
+ ++ L+ + Q Q++ SS ++ V Y KG+ +
Sbjct: 325 DEKRYLKLLGDTLSRVERGAGQYQQSVTESSFLAWTKFYQQNENAPNSIVSYYAKGALIA 384
Query: 304 RMLENMMGEESF 315
L+ M+ +S
Sbjct: 385 LSLDLMLRLQSD 396
Score = 33.4 bits (75), Expect = 0.49
Identities = 12/56 (21%), Positives = 14/56 (25%), Gaps = 11/56 (19%)
Query: 667 KRVAMTTSHELAHMWFG-----------DLVTMGWWNDLWLNEGFASYMQYKALAK 711
+ HE H W L + LW EG SY L
Sbjct: 265 QTFLSLCCHEYFHSWNIKTLKPKAFLPYQLEKESYTEQLWFYEGMTSYFDDYLLHT 320
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 33.3 bits (76), Expect = 0.46
Identities = 18/146 (12%), Positives = 45/146 (30%), Gaps = 21/146 (14%)
Query: 877 DYLVKRFGLNHRVFGRIIPSVCGKFTTQERLDEVL--DARDRSNLLDDAFNLAESQMIEY 934
+ + G++ +F I + Q + + L ++ + + E+
Sbjct: 113 KAVNEILGVDRNMFLNSI------YIKQGEIAKFLSLKPSEKLETVAKLLGID-----EF 161
Query: 935 STTFNLMKYMSKEDHFVPWTVVYNKLSRLDDKLYSTEGHEDFKLSRLDDKLYSTEGHEDF 994
+ M + KE +L R++ +L E +L + + E F
Sbjct: 162 EKCYQKMGEIVKE--------YEKRLERIEGELNYKEESLKARLKEMSNLEKEKEKLTKF 213
Query: 995 KLYIRCLLKDKLSEETWKVENKSYLE 1020
Y+ + + + Y+
Sbjct: 214 VEYLDKVRRIFGRNGFQAYLREKYVP 239
>2y72_A Collagenase, collagenase G; polycystic kidney disease domain, beta
barrel, collagen RECO domain, hydrolase; 1.18A
{Clostridium histolyticum} PDB: 3jqu_A 3js7_A
Length = 85
Score = 29.6 bits (67), Expect = 1.3
Identities = 9/56 (16%), Positives = 14/56 (25%), Gaps = 18/56 (32%)
Query: 366 TVKKSGDQVTFTQQRYLSNPNASYNPDDSPFKYLWDVYITMF------TSSDPSHT 415
+ G + F+ S + D Y WD F + H
Sbjct: 11 STGAVGRNIEFS-------GKDSKDEDGKIVSYDWD-----FGDGATSRGKNSVHA 54
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 1.6
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 7/33 (21%)
Query: 737 ENKSY--LEVNLKLVLNDLGCNFGAPSCLKKAA 767
E ++ L+ +LKL +D AP+ KA
Sbjct: 18 EKQALKKLQASLKLYADD-----SAPALAIKAT 45
Score = 30.3 bits (67), Expect = 1.6
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 7/33 (21%)
Query: 1014 ENKSY--LEVNLKLVLNDLGCNFGAPSCLKKAA 1044
E ++ L+ +LKL +D AP+ KA
Sbjct: 18 EKQALKKLQASLKLYADD-----SAPALAIKAT 45
Score = 29.5 bits (65), Expect = 3.0
Identities = 5/18 (27%), Positives = 9/18 (50%), Gaps = 4/18 (22%)
Query: 1077 NELQKKENRLRKENTIYA 1094
L+K + L+ +YA
Sbjct: 20 QALKKLQASLK----LYA 33
>1z7h_A Tetanus toxin light chain; TENT, metalloprotease, snare,
neurotransmission, hydrolase; 2.30A {Clostridium tetani}
PDB: 1yvg_A
Length = 447
Score = 30.9 bits (69), Expect = 2.3
Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 12/91 (13%)
Query: 499 NIEVTNATGYIYLHKSSLTIEETTVFKGED---ITPIDLLSTFDYAKNEYWVITFK---- 551
+ + + H ++ EE F G+D I+ ++ N+Y I K
Sbjct: 254 HEIIPSKQEIYMQHTYPISAEELFTFGGQDANLISIDIKNDLYEKTLNDYKAIANKLSQV 313
Query: 552 -----ETIDPGSYVLKFKFKGNFSKKNEGFY 577
ID SY ++ K F K + G Y
Sbjct: 314 TSCNDPNIDIDSYKQIYQQKYQFDKDSNGQY 344
>2fpq_A Botulinum neurotoxin D light chain; hexxh metalloprotease; 1.65A
{Clostridium botulinum}
Length = 444
Score = 29.7 bits (66), Expect = 6.1
Identities = 24/117 (20%), Positives = 39/117 (33%), Gaps = 22/117 (18%)
Query: 475 IPKMYDLYLNPYLGKKLFTGTVKINIEVTNATGYIYLHKSSLTIEETTVFKGED---ITP 531
++ LY G + + +I +V+ G+ ++ EE F G D I
Sbjct: 240 THSLHQLY-----GINIPSDK-RIRPQVSE--GFFSQDGPNVQFEELYTFGGLDVEIIPQ 291
Query: 532 IDLLSTFDYAKNEYWVITFK-----------ETIDPGSYVLKFKFKGNFSKKNEGFY 577
I+ + A Y I + + Y F K NF K N G +
Sbjct: 292 IERSQLREKALGHYKDIAKRLNNINKTIPSSWISNIDKYKKIFSEKYNFDKDNTGNF 348
>2a97_A BONT/F, botulinum neurotoxin type F, bontoxilysin F; clostridium
botulinum neurotoxin serotype F, light chain, catalytic
domain, X-RAY,; 1.80A {Clostridium botulinum} PDB:
2a8a_A 3fie_A 3fii_A
Length = 439
Score = 29.7 bits (66), Expect = 6.6
Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 20/114 (17%)
Query: 475 IPKMYDLYLNPYLGKKLFTGTVKINIEVTNATGYIYLHKSSLTIEETTVFKGEDITPIDL 534
I ++ LY G + T I ++ + + + + +EE F G+D+ I
Sbjct: 230 IHALHGLY-----GARGVTYEETIEVK----QAPLMIAEKPIRLEEFLTFGGQDLNIITS 280
Query: 535 LST---FDYAKNEYWVITFK--------ETIDPGSYVLKFKFKGNFSKKNEGFY 577
++ Y I + D Y F++K K +G Y
Sbjct: 281 AMKEKIYNNLLANYEKIATRLSEVNSAPPEYDINEYKDYFQWKYGLDKNADGSY 334
>1zt2_A DNA primase small subunit; heterodimeric complex, replication,
transferase; HET: DNA; 3.33A {Sulfolobus solfataricus}
SCOP: d.264.1.1
Length = 330
Score = 29.0 bits (64), Expect = 9.3
Identities = 15/127 (11%), Positives = 36/127 (28%), Gaps = 9/127 (7%)
Query: 862 PKGLPVAWDYVKKNWDYLVKRFGLNHRVF---GRIIPSVCGKFTTQERLDEVLDARDRSN 918
+ + + + + L FGL +V+ R +LD+ +R
Sbjct: 143 SECIKRGLEQTRNLVEILEDDFGLKPKVYFSGNRGF----HVQVDCYGNCALLDSDERKE 198
Query: 919 LLD--DAFNLAESQMIEYSTTFNLMKYMSKEDHFVPWTVVYNKLSRLDDKLYSTEGHEDF 976
+ + + + + + + V + RL S G
Sbjct: 199 IAEYVMGIGVPGYPGGSENAPGWVGRKNRGINGVTIDEQVTIDVKRLIRIPNSLHGKSGL 258
Query: 977 KLSRLDD 983
+ R+ +
Sbjct: 259 IVKRVPN 265
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.408
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 16,778,432
Number of extensions: 1016355
Number of successful extensions: 2042
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1941
Number of HSP's successfully gapped: 75
Length of query: 1094
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 990
Effective length of database: 3,798,009
Effective search space: 3760028910
Effective search space used: 3760028910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.4 bits)