RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13037
(1094 letters)
>d3b7sa3 d.92.1.13 (A:209-460) Leukotriene A4 hydrolase catalytic
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 252
Score = 150 bits (378), Expect = 3e-41
Identities = 50/255 (19%), Positives = 100/255 (39%), Gaps = 17/255 (6%)
Query: 121 GFPIKVYAREGQLEHMEFAQKTAIAAINFYVEYFNISYPLPKLDLIAI-PDFVSGAMEHW 179
G V++ + Q+E + + + + Y + DL+ + P F G ME+
Sbjct: 7 GPRTLVWSEKEQVEKSAYEFSETESMLKIAEDLG-GPYVWGQYDLLVLPPSFPYGGMENP 65
Query: 180 GLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMGWWNDLWLNEGFASYM 239
L + + K ++ +H+++H W G+LVT W+ WLNEG Y+
Sbjct: 66 CLTFVTP---------TLLAGDKSLSNVIAHQISHSWTGNLVTNKTWDHFWLNEGHTVYL 116
Query: 240 QYKALAKVEPTWEVDTMFLTDMLHSTLQLDQTLSSHPIVQTVSNPDQI--TEIFDVISYQ 297
+ ++ L + +HP + V + I + + Y+
Sbjct: 117 ERHICGRLFGEKFRHFNALGGWGELQNSVKTFGETHPFTKLVVDLTDIDPDVAYSSVPYE 176
Query: 298 KGSSVIRMLENMMG-EESFAHGVTSYLNEFQFKNAETNDLWSHLQKFAN---NMSVTSVM 353
KG +++ LE ++G E F + +Y+ +F +K+ T+D L + ++
Sbjct: 177 KGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDW 236
Query: 354 DTYTRQMGFPIITVK 368
+ + G P I
Sbjct: 237 NAWLYSPGLPPIKPN 251
Score = 53.5 bits (127), Expect = 4e-08
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 9/87 (10%)
Query: 630 LIAIPDFVSGAMEHWGLVTFREAAVLFKKGSSSIVNKKRVAMTTSHELAHMWFGDLVTMG 689
L+ P F G ME+ L + + K ++ +H+++H W G+LVT
Sbjct: 51 LVLPPSFPYGGMENPCLTFVTP---------TLLAGDKSLSNVIAHQISHSWTGNLVTNK 101
Query: 690 WWNDLWLNEGFASYMQYKALAKVEPTW 716
W+ WLNEG Y++ ++
Sbjct: 102 TWDHFWLNEGHTVYLERHICGRLFGEK 128
>d3b7sa2 b.98.1.1 (A:1-208) Leukotriene A4 hydrolase N-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 208
Score = 51.7 bits (123), Expect = 7e-08
Identities = 17/139 (12%), Positives = 40/139 (28%), Gaps = 5/139 (3%)
Query: 468 SRLETTVIPKMYDLYLNPYLGKKLFTGTVKINIEVTNAT-GYIYLHKSSLTIEETTVFKG 526
+ + K L + ++ TGT + ++ + L LTIE+ +
Sbjct: 10 ASPASVCRTKHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKVVINGQ 69
Query: 527 EDITPIDLLSTFDYAKNEYWVITFKETIDPGSYVLKFKFKGNFSKKNEGFYESMYMNYKN 586
E L Y + + V++ F+ + K+
Sbjct: 70 E--VKYALGERQSYKGSPMEISLPIALSKNQEIVIEISFETSP--KSSALQWLTPEQTSG 125
Query: 587 HKRLIATSKFEPTYLWDVY 605
+ S+ + + +
Sbjct: 126 KEHPYLFSQCQAIHCRAIL 144
Score = 40.6 bits (94), Expect = 4e-04
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 71 SEGPTKKSTDDQPGVNQTTVEFATTVPMSTYLVCFIV 107
T D ++ +F VP+ YL+ +V
Sbjct: 170 MSAIRDGETPDPEDPSRKIYKFIQKVPIPCYLIALVV 206
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 27.2 bits (60), Expect = 3.2
Identities = 8/53 (15%), Positives = 19/53 (35%)
Query: 1038 SCLKKAADLLKNWFDSGVKPEADLRGLVYRYVQALPRRGNELQKKENRLRKEN 1090
D + ++ P+ + Y+ ++ +L +E+ LRK
Sbjct: 23 RSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRR 75
>d1kjpa_ d.92.1.2 (A:) Thermolysin {Bacillus thermoproteolyticus
[TaxId: 1427]}
Length = 316
Score = 28.8 bits (64), Expect = 3.8
Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 6/84 (7%)
Query: 315 FAHGVTSYLNEFQFKNAETNDLWSHLQKFANNMSVTSVMDTYTRQMGFPIITVKKSGDQV 374
H VT Y + E+ + + + ++G + T SGD +
Sbjct: 144 LTHAVTDYTAGLIY-QNESGAINEAISDIFGTLVEFYANKNPDWEIGEDVYTPGISGDSL 202
Query: 375 TFTQQRYLSNPNASYNPDDSPFKY 398
R +S+P +PD +Y
Sbjct: 203 -----RSMSDPAKYGDPDHYSKRY 221
>d1j72a1 d.109.1.1 (A:11-124) Macrophage capping protein Cap G
{Human (Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 27.5 bits (61), Expect = 3.9
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 401 DVYITMFTSSDPSHTLHTWLYRNMSED 427
D Y+ + + LH W+ + S D
Sbjct: 36 DSYLVLHNGPEEVSHLHLWIGQQSSRD 62
Score = 27.5 bits (61), Expect = 3.9
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 603 DVYITMFTSSDPSHTLHTWLYRNMSED 629
D Y+ + + LH W+ + S D
Sbjct: 36 DSYLVLHNGPEEVSHLHLWIGQQSSRD 62
>d1aopa3 d.134.1.1 (A:149-345) Sulfite reductase hemoprotein (SiRHP),
domains 2 and 4 {Escherichia coli [TaxId: 562]}
Length = 197
Score = 27.6 bits (61), Expect = 6.1
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 26/162 (16%)
Query: 933 EYSTTFNLMKYMSKEDHFVPWTVVYNKLSRLDDKLYSTEGHEDFKLSRLDDKL---YSTE 989
++ + K +S +H +P T Y ++ +K+ +T+ + L K
Sbjct: 18 LHAEAYEWAKKIS--EHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIP 75
Query: 990 GHEDFKLYIRCL----LKDKLSEETWKVENKSYLEVNLKLVLNDLGCNFGAPSCLKKAAD 1045
D L+ + + + + + LV L G + A
Sbjct: 76 PQNDIDLHANDMNFVAIAENGKLVGFNL-----------LVGGGLSIEHGNKKTYARTAS 124
Query: 1046 LLKNWFDSGVKPEADLRGLVYRYVQALPRRGNELQKKENRLR 1087
G P + V GN +K + +
Sbjct: 125 EF------GYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTK 160
>d1t3ca_ d.92.1.7 (A:) Botulinum neurotoxin {Clostridium botulinum,
serotype E [TaxId: 1491]}
Length = 411
Score = 27.9 bits (62), Expect = 7.0
Identities = 16/92 (17%), Positives = 27/92 (29%), Gaps = 9/92 (9%)
Query: 496 VKINIEVTNATGYIYLHKSSLTIEETTVFKGEDITPIDLLST---FDYAKNEYWVIT--- 549
+ +T + + IEE F G D+ I + + +Y I
Sbjct: 226 ITTKYTITQKQNPLITNIRGTNIEEFLTFGGTDLNIITSAQSNDIYTNLLADYKKIASKL 285
Query: 550 --FKETIDPG-SYVLKFKFKGNFSKKNEGFYE 578
+ + Y F+ K K G Y
Sbjct: 286 SKVQVSNPLLNPYKDVFEAKYGLDKDASGIYS 317
>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex
aeolicus [TaxId: 63363]}
Length = 216
Score = 27.3 bits (59), Expect = 9.2
Identities = 21/145 (14%), Positives = 44/145 (30%), Gaps = 2/145 (1%)
Query: 829 EPKLLEKFLEMAKDEKNIRSQDYFTVIVMVAGNPKGLPVAWDYVKKNWDYLVKRFGLNHR 888
E +++ K L + DEK + V++ +G + + +K + +K L H
Sbjct: 4 ESRVIRKVLALQNDEKIFSGER--RVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHF 61
Query: 889 VFGRIIPSVCGKFTTQERLDEVLDARDRSNLLDDAFNLAESQMIEYSTTFNLMKYMSKED 948
+ + +E E AF +E + F K++ +
Sbjct: 62 NHMLRESAERDEEFCKEFAKERNMKIFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEIL 121
Query: 949 HFVPWTVVYNKLSRLDDKLYSTEGH 973
+ + D S
Sbjct: 122 ESEGFDCIATAHHLNDLLETSLLFF 146
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.133 0.408
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,174,592
Number of extensions: 200800
Number of successful extensions: 526
Number of sequences better than 10.0: 1
Number of HSP's gapped: 519
Number of HSP's successfully gapped: 14
Length of query: 1094
Length of database: 2,407,596
Length adjustment: 95
Effective length of query: 999
Effective length of database: 1,103,246
Effective search space: 1102142754
Effective search space used: 1102142754
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)