Query psy13039
Match_columns 199
No_of_seqs 245 out of 1345
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 17:55:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13039.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13039hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xmp_A PURE, phosphoribosylami 20.3 53 0.0018 26.1 2.3 48 22-72 1-50 (170)
2 2wzo_A Transforming growth fac 19.7 34 0.0012 25.9 1.1 34 104-137 12-51 (146)
3 2hzs_I RNA polymerase II media 16.6 1E+02 0.0036 16.7 2.2 9 22-30 19-27 (27)
4 3gv0_A Transcriptional regulat 14.7 35 0.0012 27.1 0.0 14 105-118 275-288 (288)
5 2kta_A Putative helicase; PSI, 13.0 81 0.0028 21.4 1.5 19 136-154 50-68 (74)
6 3e96_A Dihydrodipicolinate syn 11.3 1.4E+02 0.0049 25.1 2.9 13 106-118 304-316 (316)
7 2i9f_A Nucleocapsid; assembly, 10.9 1.1E+02 0.0037 20.0 1.5 53 26-79 3-65 (69)
8 3jwg_A HEN1, methyltransferase 10.1 1.1E+02 0.0038 23.1 1.6 17 102-118 202-218 (219)
9 3dup_A MUTT/nudix family prote 9.8 2.5E+02 0.0086 23.7 3.8 36 44-79 249-284 (300)
10 3lop_A Substrate binding perip 8.5 2.9E+02 0.0098 22.3 3.7 31 45-80 289-319 (364)
No 1
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=20.27 E-value=53 Score=26.08 Aligned_cols=48 Identities=17% Similarity=0.230 Sum_probs=27.9
Q ss_pred cCCCCCCccCCCcccccccc--cccccchhHHHHHHHHHhccccccccCChhH
Q psy13039 22 GEGWHNYHHTFPWDYKAAEL--GNYRLNLTTAIIDMFAWIGWAYDLKTASPEM 72 (199)
Q Consensus 22 GEgwHN~HH~fP~d~r~~~~--~~~~~D~t~~~I~~l~~lGla~~lk~~~~~~ 72 (199)
|.+-|..||.-|. .+-+ +--++....-....|+.+|+-+|++..+..+
T Consensus 1 ~~~~~~~~~~~~~---V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR 50 (170)
T 1xmp_A 1 GSSHHHHHHMKSL---VGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHR 50 (170)
T ss_dssp ----------CCS---EEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTT
T ss_pred CCCccccccCCCc---EEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEeccC
Confidence 4456788888884 4421 1235667888899999999999999988643
No 2
>2wzo_A Transforming growth factor beta regulator 1; nucleus, cell cycle, tumor suppressor; 1.60A {Homo sapiens}
Probab=19.73 E-value=34 Score=25.89 Aligned_cols=34 Identities=15% Similarity=0.313 Sum_probs=23.2
Q ss_pred eEEEeeC------CCcCCCccCCCCcccccccCCcccchh
Q psy13039 104 VAFLAFG------EGWHNYHHTFPWDYKAAELGNYRLNLT 137 (199)
Q Consensus 104 ~~~~t~G------EgwHN~HH~fP~d~~~~~~g~~~~D~t 137 (199)
+.++.+| ++|||=++.||--|++.+.-|--.||.
T Consensus 12 l~v~slG~i~~~~~~fh~~~~IyPvGy~~~R~y~s~~dp~ 51 (146)
T 2wzo_A 12 LTVYSLGEIITDRPGFHDESAIYPVGYCSTRIYASMKCPD 51 (146)
T ss_dssp EEEEEEEECCCSSGGGBCSSCBCCEEEEEEEEEECSSCTT
T ss_pred EEEEEeeeEccCCCCccCCCceeCCCEEEEEEEecccCCC
Confidence 4555666 579999999999998875422223443
No 3
>2hzs_I RNA polymerase II mediator complex subunit 8; beta barrel, channel, helix, transcription; 2.70A {Saccharomyces cerevisiae}
Probab=16.65 E-value=1e+02 Score=16.69 Aligned_cols=9 Identities=56% Similarity=0.936 Sum_probs=5.7
Q ss_pred cCCCCCCcc
Q psy13039 22 GEGWHNYHH 30 (199)
Q Consensus 22 GEgwHN~HH 30 (199)
||--|.-||
T Consensus 19 gekhhhhhh 27 (27)
T 2hzs_I 19 GEKHHHHHH 27 (27)
T ss_dssp CCCCSSCCC
T ss_pred ccccccccC
Confidence 886655554
No 4
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=14.68 E-value=35 Score=27.13 Aligned_cols=14 Identities=43% Similarity=0.596 Sum_probs=0.5
Q ss_pred EEEeeCCCcCCCcc
Q psy13039 105 AFLAFGEGWHNYHH 118 (199)
Q Consensus 105 ~~~t~GEgwHN~HH 118 (199)
+=..-|||||.-||
T Consensus 275 s~~~~~~~~~~~~~ 288 (288)
T 3gv0_A 275 SSMAPKEGHHHHHH 288 (288)
T ss_dssp C-------------
T ss_pred cccCCcccccccCC
Confidence 44567999999887
No 5
>2kta_A Putative helicase; PSI, NESG, GFT ATP-binding, nucleotide-binding, structu genomics, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=13.03 E-value=81 Score=21.35 Aligned_cols=19 Identities=21% Similarity=0.363 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHhccccccc
Q psy13039 136 LTTAIIDMFAWIGWAYDLK 154 (199)
Q Consensus 136 ~t~~~I~~l~~lGl~~~lk 154 (199)
++.-=|..|..||.+|+|.
T Consensus 50 Ls~eRi~~L~~lGf~w~~~ 68 (74)
T 2kta_A 50 LPNDRRLLLDKIGFVWSLE 68 (74)
T ss_dssp CCHHHHHHHHHHTCCCCCC
T ss_pred CCHHHHHHHHHcCCEeccc
Confidence 4555699999999999985
No 6
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=11.30 E-value=1.4e+02 Score=25.06 Aligned_cols=13 Identities=46% Similarity=0.652 Sum_probs=0.0
Q ss_pred EEeeCCCcCCCcc
Q psy13039 106 FLAFGEGWHNYHH 118 (199)
Q Consensus 106 ~~t~GEgwHN~HH 118 (199)
--|.|||-|.-||
T Consensus 304 ~~~~~~~~~~~~~ 316 (316)
T 3e96_A 304 QPTKGEGHHHHHH 316 (316)
T ss_dssp -------------
T ss_pred CCCCCCCcccCCC
Confidence 4589998887776
No 7
>2i9f_A Nucleocapsid; assembly, viral protein; 2.00A {Equine arteritis virus} SCOP: d.254.1.1
Probab=10.89 E-value=1.1e+02 Score=20.03 Aligned_cols=53 Identities=26% Similarity=0.420 Sum_probs=31.4
Q ss_pred CCCccCCCccccccccccc-ccchhHHHHHHHH---------HhccccccccCChhHHhhhhhh
Q psy13039 26 HNYHHTFPWDYKAAELGNY-RLNLTTAIIDMFA---------WIGWAYDLKTASPEMVSRRVAR 79 (199)
Q Consensus 26 HN~HH~fP~d~r~~~~~~~-~~D~t~~~I~~l~---------~lGla~~lk~~~~~~I~~R~~R 79 (199)
|..||--|.|-|.. +.-- .--++.-+-+++- +=||.+-+..++...|++++.-
T Consensus 3 hhhhhhepgdlrhd-lnqqeratlssnvqrffmighgsltadaggltytvswvptkqiqrkvap 65 (69)
T 2i9f_A 3 HHHHHHEPGDLRHD-LNQQERATLSSNVQRFFMIGHGSLTADAGGLTYTVSWVPTKQIQRKVAP 65 (69)
T ss_dssp ---CCCCCSSGGGG-CCHHHHHHHHHHHHHHHHTTCSEEEECSSSEEEEEEECCCHHHHHHHC-
T ss_pred cccccCCCccccch-hhHHHHHHHhhhhhheeeecccceeecCCCcEEEEEeeeHHHhhhhcCC
Confidence 56688889988876 2211 1224444444442 3378889999998888877653
No 8
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=10.06 E-value=1.1e+02 Score=23.08 Aligned_cols=17 Identities=29% Similarity=0.680 Sum_probs=8.9
Q ss_pred ceeEEEeeCCCcCCCcc
Q psy13039 102 SSVAFLAFGEGWHNYHH 118 (199)
Q Consensus 102 ~~~~~~t~GEgwHN~HH 118 (199)
..+++++.|.|-|.+||
T Consensus 202 ~qi~~~~~~~~~~~~~~ 218 (219)
T 3jwg_A 202 TQMGVFTLGAGGHHHHH 218 (219)
T ss_dssp EEEEEEEECC-------
T ss_pred eEEEEEeccCCCccccC
Confidence 57899999999998887
No 9
>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}
Probab=9.76 E-value=2.5e+02 Score=23.70 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=28.8
Q ss_pred cccchhHHHHHHHHHhccccccccCChhHHhhhhhh
Q psy13039 44 YRLNLTTAIIDMFAWIGWAYDLKTASPEMVSRRVAR 79 (199)
Q Consensus 44 ~~~D~t~~~I~~l~~lGla~~lk~~~~~~I~~R~~R 79 (199)
|..+.+..+|++|.+-|++..=..+.-..|.+|+.|
T Consensus 249 F~p~~~lV~ldfl~RhG~i~~~~~~~y~~i~~~l~r 284 (300)
T 3dup_A 249 FKFNVNLTVIDFAIRHGLIDPDNEPDYQEILAGLRG 284 (300)
T ss_dssp BCTTHHHHHHHHHHHTTSSCTTTSTTHHHHHHHTBC
T ss_pred cCccHHHHHHHHHHHhCCcCCccCCCHHHHHHHhcc
Confidence 456788889999999999987777777777777755
No 10
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=8.54 E-value=2.9e+02 Score=22.34 Aligned_cols=31 Identities=10% Similarity=0.160 Sum_probs=22.2
Q ss_pred ccchhHHHHHHHHHhccccccccCChhHHhhhhhhc
Q psy13039 45 RLNLTTAIIDMFAWIGWAYDLKTASPEMVSRRVART 80 (199)
Q Consensus 45 ~~D~t~~~I~~l~~lGla~~lk~~~~~~I~~R~~Rt 80 (199)
-+|-...+...+++.| ..++++.|.+.+..+
T Consensus 289 ~yda~~~~~~al~~ag-----~~~~~~~v~~aL~~~ 319 (364)
T 3lop_A 289 GFVAAKVLAEAIRRAG-----PKPTREQVRHALTEL 319 (364)
T ss_dssp HHHHHHHHHHHHHHHC-----SSCCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhC-----CCCCHHHHHHHHHhc
Confidence 4688888888888886 234677777766554
Done!