Query psy13039
Match_columns 199
No_of_seqs 245 out of 1345
Neff 6.0
Searched_HMMs 13730
Date Fri Aug 16 17:55:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13039.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13039hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1w6ka1 a.102.4.2 (A:6-99,A:37 10.6 2.3E+02 0.017 23.1 6.3 93 45-151 169-264 (448)
2 d2g5gx1 c.150.1.1 (X:9-263) He 6.8 51 0.0037 25.2 0.2 14 106-120 33-48 (255)
3 d2huec1 a.22.1.1 (C:20-101) Hi 5.3 1E+02 0.0076 19.3 1.0 18 152-169 58-75 (82)
4 d1ofcx1 a.4.1.3 (X:799-850) SA 4.3 2.7E+02 0.02 16.0 2.5 24 51-74 9-38 (52)
5 d2uubn1 g.39.1.7 (N:2-61) Ribo 4.3 2.2E+02 0.016 17.0 2.1 25 133-157 35-59 (60)
6 d1x7fa2 c.1.8.12 (A:1-244) Out 4.1 88 0.0064 24.0 -0.0 31 111-149 144-174 (244)
7 d1ysja1 c.56.5.4 (A:4-177,A:29 4.0 1.6E+02 0.012 22.3 1.5 23 128-150 19-41 (261)
8 d5easa1 a.102.4.1 (A:24-220) 5 3.8 1.7E+02 0.012 21.5 1.4 19 137-155 44-62 (197)
9 d2cora2 g.39.1.3 (A:8-42) Pinc 3.7 1.6E+02 0.012 15.8 0.9 10 20-29 25-34 (35)
10 d1so2a_ a.211.1.2 (A:) cGMP-in 3.7 1.4E+02 0.01 24.3 0.9 27 48-75 38-64 (415)
No 1
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.56 E-value=2.3e+02 Score=23.06 Aligned_cols=93 Identities=12% Similarity=0.119 Sum_probs=48.7
Q ss_pred ccchhHHHHHHHHHhcccc-cc-ccCChhHHhhhhhh-cCCCCCCCCCCCccccCCccCCceeEEEeeCCCcCCCccCCC
Q psy13039 45 RLNLTTAIIDMFAWIGWAY-DL-KTASPEMVSRRVAR-TGDGTRHGHSHENQVHISSSENSSVAFLAFGEGWHNYHHTFP 121 (199)
Q Consensus 45 ~~D~t~~~I~~l~~lGla~-~l-k~~~~~~I~~R~~R-tgD~s~~~~~rpyDk~isprn~~~~~~~t~GEgwHN~HH~fP 121 (199)
..|-|...++.|..+.--. ++ ..++.+.|.+.+.= ....+...+.--||..... .++..+.+.+.|+| -+
T Consensus 169 d~DdTA~~l~al~~~~~~~~~~~~~~~~~~i~~av~wLl~mQn~dGGw~afd~~~~~---~~l~~~~~~~~~~~----~~ 241 (448)
T d1w6ka1 169 VSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGG---HLLELLNPSEVFGD----IM 241 (448)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSC---GGGGGGCCCSSCSS----CS
T ss_pred CCccHHHHHHHHHHHhccCccccccccHHHHHHHHHHHHHhcCCCCCeeeccCCCCh---hhhhcccchhhhhc----cc
Confidence 4688999998887664322 11 22344555554311 1111222222334443222 33344455666665 23
Q ss_pred CcccccccCCcccchhHHHHHHHHHhcccc
Q psy13039 122 WDYKAAELGNYRLNLTTAIIDMFAWIGWAY 151 (199)
Q Consensus 122 ~d~~~~~~g~~~~D~t~~~I~~l~~lGl~~ 151 (199)
-|+ --.|+|..+|..|..++.-.
T Consensus 242 ~D~-------s~~d~T~~~l~aL~~~~~~~ 264 (448)
T d1w6ka1 242 IDY-------TYVECTSAVMQALKYFHKRF 264 (448)
T ss_dssp SCC-------CBHHHHHHHHHHHHHHHHHC
T ss_pred cCC-------CcchHHHHHHHHHHHHhhhC
Confidence 222 13589999999999887654
No 2
>d2g5gx1 c.150.1.1 (X:9-263) Heme transport protein ChaN {Campylobacter jejuni [TaxId: 197]}
Probab=6.77 E-value=51 Score=25.17 Aligned_cols=14 Identities=29% Similarity=0.456 Sum_probs=10.8
Q ss_pred EEeeCCCcCCC--ccCC
Q psy13039 106 FLAFGEGWHNY--HHTF 120 (199)
Q Consensus 106 ~~t~GEgwHN~--HH~f 120 (199)
++-+|| .||| ||..
T Consensus 33 vVllGE-~Hdn~~hH~~ 48 (255)
T d2g5gx1 33 VILLGE-KHDEVKHKIS 48 (255)
T ss_dssp EEEEEE-CTTCHHHHHH
T ss_pred EEEECC-CCCCHHHHHH
Confidence 588999 9997 6654
No 3
>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=5.27 E-value=1e+02 Score=19.34 Aligned_cols=18 Identities=28% Similarity=0.254 Sum_probs=11.1
Q ss_pred ccccCCHHHHHHHhhhcC
Q psy13039 152 DLKTASPEMVSRRVARTG 169 (199)
Q Consensus 152 ~lk~~~~~~i~~~~~~~~ 169 (199)
.-|+++.+.|..++.+.+
T Consensus 58 kRKTvt~~DV~~Alkr~g 75 (82)
T d2huec1 58 KRKTVTAMDVVYALKRQG 75 (82)
T ss_dssp TCSEECHHHHHHHTTTTC
T ss_pred CCCcCCHHHHHHHHHhcC
Confidence 446666777766665544
No 4
>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=4.32 E-value=2.7e+02 Score=16.00 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=15.5
Q ss_pred HHHHHHHHhc------cccccccCChhHHh
Q psy13039 51 AIIDMFAWIG------WAYDLKTASPEMVS 74 (199)
Q Consensus 51 ~~I~~l~~lG------la~~lk~~~~~~I~ 74 (199)
-||+++++-| +|.++..=+++.|+
T Consensus 9 ~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~ 38 (52)
T d1ofcx1 9 QFIKANEKYGRDDIDNIAKDVEGKTPEEVI 38 (52)
T ss_dssp HHHHHHHHHCTTCHHHHTTSSTTCCHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHhcCCCHHHHH
Confidence 4788999988 45666444455454
No 5
>d2uubn1 g.39.1.7 (N:2-61) Ribosomal protein S14 {Thermus thermophilus [TaxId: 274]}
Probab=4.30 E-value=2.2e+02 Score=16.96 Aligned_cols=25 Identities=20% Similarity=0.155 Sum_probs=22.4
Q ss_pred ccchhHHHHHHHHHhccccccccCC
Q psy13039 133 RLNLTTAIIDMFAWIGWAYDLKTAS 157 (199)
Q Consensus 133 ~~D~t~~~I~~l~~lGl~~~lk~~~ 157 (199)
.|.++...++-|+.-|++.+++..|
T Consensus 35 ~F~lsR~~fR~la~~G~ipGv~KaS 59 (60)
T d2uubn1 35 FFGLCRICLRELAHKGQLPGVRKAS 59 (60)
T ss_dssp TTSCBHHHHHHHHHHTCSTTCEECC
T ss_pred ccccHHHHHHHHHHcCCCCCeeecC
Confidence 5899999999999999999998764
No 6
>d1x7fa2 c.1.8.12 (A:1-244) Outer surface protein, N-terminal domain {Bacillus cereus [TaxId: 1396]}
Probab=4.14 E-value=88 Score=24.03 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=15.9
Q ss_pred CCcCCCccCCCCcccccccCCcccchhHHHHHHHHHhcc
Q psy13039 111 EGWHNYHHTFPWDYKAAELGNYRLNLTTAIIDMFAWIGW 149 (199)
Q Consensus 111 EgwHN~HH~fP~d~~~~~~g~~~~D~t~~~I~~l~~lGl 149 (199)
+||||| ||.-| +| . ..+.-.-.=+.|.+.|+
T Consensus 144 ~acHNF---YPr~~-TG-L---s~~~f~~~n~~~k~~gi 174 (244)
T d1x7fa2 144 IGCHNF---YPQKF-TG-L---PYDYFIRCSERFKKHGI 174 (244)
T ss_dssp EEECCC---BCSTT-CS-B---CHHHHHHHHHHHHHTTC
T ss_pred EEeecc---CCCCC-CC-C---CHHHHHHHHHHHHHcCC
Confidence 579999 88533 23 1 22333333345555554
No 7
>d1ysja1 c.56.5.4 (A:4-177,A:293-379) Protein YxeP {Bacillus subtilis [TaxId: 1423]}
Probab=3.95 E-value=1.6e+02 Score=22.34 Aligned_cols=23 Identities=17% Similarity=-0.002 Sum_probs=20.9
Q ss_pred ccCCcccchhHHHHHHHHHhccc
Q psy13039 128 ELGNYRLNLTTAIIDMFAWIGWA 150 (199)
Q Consensus 128 ~~g~~~~D~t~~~I~~l~~lGl~ 150 (199)
|.++-|+-.+.++.+.|+.+|+-
T Consensus 19 El~~~E~~T~~~i~~~L~~~G~~ 41 (261)
T d1ysja1 19 ELSFQEVETTKKIRRWLEEEQIE 41 (261)
T ss_dssp CCTTCCHHHHHHHHHHHHHTTCE
T ss_pred CcCChHHHHHHHHHHHHHHCCCe
Confidence 78878999999999999999983
No 8
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Probab=3.77 E-value=1.7e+02 Score=21.52 Aligned_cols=19 Identities=26% Similarity=0.606 Sum_probs=15.8
Q ss_pred hHHHHHHHHHhcccccccc
Q psy13039 137 TTAIIDMFAWIGWAYDLKT 155 (199)
Q Consensus 137 t~~~I~~l~~lGl~~~lk~ 155 (199)
.-.+|+.+++||+.+....
T Consensus 44 ~L~lID~LqRLGi~yhFe~ 62 (197)
T d5easa1 44 TLNLIDIIERLGISYHFEK 62 (197)
T ss_dssp HHHHHHHHHHTTCGGGGHH
T ss_pred HHHHHHHHHHcCcHHHHHH
Confidence 3578999999999998843
No 9
>d2cora2 g.39.1.3 (A:8-42) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.74 E-value=1.6e+02 Score=15.85 Aligned_cols=10 Identities=20% Similarity=0.278 Sum_probs=7.9
Q ss_pred hhcCCCCCCc
Q psy13039 20 AFGEGWHNYH 29 (199)
Q Consensus 20 t~GEgwHN~H 29 (199)
.-||.+|-||
T Consensus 25 Fr~d~YHp~H 34 (35)
T d2cora2 25 FKNDPYHPDH 34 (35)
T ss_dssp CSSSCCCTTT
T ss_pred ecCCCCCCCC
Confidence 3588899887
No 10
>d1so2a_ a.211.1.2 (A:) cGMP-inhibited 3',5'-cyclic phosphodiesterase B, pde3b {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.73 E-value=1.4e+02 Score=24.34 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHhccccccccCChhHHhh
Q psy13039 48 LTTAIIDMFAWIGWAYDLKTASPEMVSR 75 (199)
Q Consensus 48 ~t~~~I~~l~~lGla~~lk~~~~~~I~~ 75 (199)
+....+.++..+||...++-+ .+.+.+
T Consensus 38 L~~~~~~lf~~~gl~~~f~i~-~~~l~~ 64 (415)
T d1so2a_ 38 LSQVMYTLFQDTGLLEIFKIP-TQQFMN 64 (415)
T ss_dssp HHHHHHHHHHHTTHHHHTTCC-HHHHHH
T ss_pred HHHHHHHHHHHCCcHHhcCCC-HHHHHH
Confidence 356788899999999888754 444443
Done!