RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13039
(199 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.007
Identities = 33/235 (14%), Positives = 63/235 (26%), Gaps = 99/235 (42%)
Query: 2 RPYDKHISS------SENSSVAFLAF-GEGWHNYHHTFPWDYKAAELGN----YRLNLTT 50
RP+DK +S E ++ F G+G N F EL + Y + +
Sbjct: 135 RPFDKKSNSALFRAVGEGNAQLVAIFGGQG--NTDDYFE------ELRDLYQTYHVLVGD 186
Query: 51 AI------------------------IDMFAWI-------GWAYDLKTASPEMVS----- 74
I +++ W+ Y L + P +S
Sbjct: 187 LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY-LLSI-P--ISCPLIG 242
Query: 75 -------RRVARTGDGTRHGHSHENQVHISSSENS------SVAFLAFGEGWHNYHHTFP 121
A+ G + + +A + W ++
Sbjct: 243 VIQLAHYVVTAKL-----LGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFV--- 294
Query: 122 WDYKAAELGNYRLNLTTAIIDMFAWIGW----AYDLKTASPEMVSRRVARTGDGT 172
++ AI +F +IG AY + P ++ + +G
Sbjct: 295 -------------SVRKAITVLF-FIGVRCYEAYPNTSLPPSILEDSLEN-NEGV 334
Score = 31.6 bits (71), Expect = 0.17
Identities = 16/110 (14%), Positives = 32/110 (29%), Gaps = 46/110 (41%)
Query: 15 SVAFLAFGEGWHNYHHTFPWDYKAAELGNYRLNLTTAIIDMFAWIGW----AYDLKTASP 70
+ +A + W ++ ++ AI +F +IG AY + P
Sbjct: 279 TAVAIAETDSWESFFV----------------SVRKAITVLF-FIGVRCYEAYPNTSLPP 321
Query: 71 EMVSRRVARTGDGT-----------------------RHGHSHENQVHIS 97
++ + +G H + + QV IS
Sbjct: 322 SILEDSLEN-NEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGK-QVEIS 369
>1qhf_A Protein (phosphoglycerate mutase); transferase (phosphoryl); HET:
3PG; 1.70A {Saccharomyces cerevisiae} SCOP: c.60.1.1
PDB: 5pgm_D 1bq3_D* 1bq4_D 4pgm_A 3pgm_A*
Length = 240
Score = 28.2 bits (64), Expect = 1.5
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
Query: 173 RHGHS---HENQVWGWNDEDLTEE 193
RHG S +N GW D L+ +
Sbjct: 7 RHGQSEWNEKNLFTGWVDVKLSAK 30
>3kkk_A Phosphoglycerate mutase; PGAM, glycolysis, malaria, structural
genomics, medical STRU genomics of pathogenic protozoa,
MSGPP; 2.08A {Plasmodium falciparum 3D7} PDB: 1xq9_A
Length = 258
Score = 28.3 bits (64), Expect = 1.5
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
Query: 173 RHGHS---HENQVWGWNDEDLTEE 193
RHG S EN+ GW D L+E+
Sbjct: 18 RHGESTWNKENKFTGWTDVPLSEK 41
>1e58_A Phosphoglycerate mutase; phosphohistidine, glycolysis and
gluconeogenesis, isomerase; HET: NEP; 1.25A {Escherichia
coli} SCOP: c.60.1.1 PDB: 1e59_A*
Length = 249
Score = 28.2 bits (64), Expect = 1.5
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
Query: 173 RHGHS---HENQVWGWNDEDLTEE 193
RHG S EN+ GW D DL+E+
Sbjct: 9 RHGESQWNKENRFTGWYDVDLSEK 32
>3gp3_A 2,3-bisphosphoglycerate-dependent phosphoglycerat;
phosphoglyceromutase, decode, SBRI, niaid, UWPPG,
glycolysis isomerase; HET: PG4 SEP; 1.50A {Burkholderia
pseudomallei} PDB: 3fdz_A* 3ezn_A* 3gp5_A* 3gw8_A*
3lnt_A
Length = 257
Score = 28.3 bits (64), Expect = 1.6
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
Query: 173 RHGHS---HENQVWGWNDEDLTEE 193
RHG S EN+ GW D DLTE+
Sbjct: 16 RHGESTWNKENRFTGWVDVDLTEQ 39
>3d8h_A Glycolytic phosphoglycerate mutase; structural genomics, malaria,
glycolysis, I structural genomics consortium, SGC; 2.01A
{Cryptosporidium parvum}
Length = 267
Score = 28.3 bits (64), Expect = 1.7
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
Query: 173 RHGHS---HENQVWGWNDEDLTEE 193
RHG S EN+ GW D L+E+
Sbjct: 27 RHGESEWNKENRFTGWTDVSLSEQ 50
>4emb_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural
genomics, niaid, national institute of allergy AN
infectious diseases; 2.30A {Borrelia burgdorferi}
Length = 274
Score = 27.9 bits (63), Expect = 1.8
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
Query: 173 RHGHS---HENQVWGWNDEDLTEE 193
RHG S EN GW D L+++
Sbjct: 34 RHGESEWNKENLFTGWTDVKLSDK 57
>2hhj_A Bisphosphoglycerate mutase; isomerase; HET: NEP DG2 3PG; 1.50A
{Homo sapiens} SCOP: c.60.1.1 PDB: 1t8p_A* 2f90_A*
2a9j_A* 2h4z_A* 2h52_A* 2h4x_A* 3nfy_A
Length = 267
Score = 27.9 bits (63), Expect = 1.9
Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 3/24 (12%)
Query: 173 RHGHS---HENQVWGWNDEDLTEE 193
RHG EN+ W D+ L E
Sbjct: 10 RHGEGAWNKENRFCSWVDQKLNSE 33
>4eo9_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural
genomics, niaid, national institute of allergy AN
infectious diseases; 2.45A {Mycobacterium leprae}
Length = 268
Score = 27.9 bits (63), Expect = 1.9
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
Query: 173 RHGHS---HENQVWGWNDEDLTEE 193
RHG S N GW D LT++
Sbjct: 34 RHGESDWNARNLFTGWVDVGLTDK 57
>1rii_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyerate
mutase, SH3 domain binding, structural genom TBSGC;
1.70A {Mycobacterium tuberculosis} SCOP: c.60.1.1
Length = 265
Score = 27.9 bits (63), Expect = 2.0
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
Query: 173 RHGHS---HENQVWGWNDEDLTEE 193
RHG S N GW D LT++
Sbjct: 11 RHGESDWNALNLFTGWVDVGLTDK 34
>1fzt_A Phosphoglycerate mutase; open B-sheet-helices, isomerase; NMR
{Schizosaccharomyces pombe} SCOP: c.60.1.1
Length = 211
Score = 27.8 bits (63), Expect = 2.1
Identities = 10/24 (41%), Positives = 11/24 (45%), Gaps = 3/24 (12%)
Query: 173 RHGHS---HENQVWGWNDEDLTEE 193
RHG S N GW D L+E
Sbjct: 14 RHGESEWNKLNLFTGWKDPALSET 37
>1yfk_A Phosphoglycerate mutase 1; alpha/beta, isomerase, hydrolase; HET:
CIT; 2.70A {Homo sapiens} PDB: 1yjx_A*
Length = 262
Score = 27.9 bits (63), Expect = 2.1
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
Query: 173 RHGHS---HENQVWGWNDEDLTEE 193
RHG S EN+ GW D DL+
Sbjct: 10 RHGESAWNLENRFSGWYDADLSPA 33
>3r7a_A Phosphoglycerate mutase, putative; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE EPE; 1.84A {Bacillus anthracis}
Length = 237
Score = 26.5 bits (59), Expect = 6.1
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 3/25 (12%)
Query: 172 TRHGHS---HENQVWGWNDEDLTEE 193
TRHG + ++ GW D L E+
Sbjct: 19 TRHGKTILNTNHRAQGWADSPLVEK 43
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.131 0.436
Gapped
Lambda K H
0.267 0.0787 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,361,297
Number of extensions: 192234
Number of successful extensions: 468
Number of sequences better than 10.0: 1
Number of HSP's gapped: 467
Number of HSP's successfully gapped: 24
Length of query: 199
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 110
Effective length of database: 4,216,824
Effective search space: 463850640
Effective search space used: 463850640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.9 bits)