RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13039
         (199 letters)



>d1dk0a_ d.35.1.1 (A:) Heme-binding protein A (HasA) {Serratia
           marcescens [TaxId: 615]}
          Length = 173

 Score = 27.1 bits (60), Expect = 1.1
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 4/44 (9%)

Query: 92  NQVHISSSENSSVAFLAFGE----GWHNYHHTFPWDYKAAELGN 131
           +Q  ISS+ N   AF+A G      ++   HT      +   G+
Sbjct: 52  SQYAISSTANQVTAFVAGGNLTYTLFNEPAHTLYGQLDSLSFGD 95



 Score = 25.9 bits (57), Expect = 2.5
 Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 4/40 (10%)

Query: 8  ISSSENSSVAFLAFGE----GWHNYHHTFPWDYKAAELGN 43
          ISS+ N   AF+A G      ++   HT      +   G+
Sbjct: 56 ISSTANQVTAFVAGGNLTYTLFNEPAHTLYGQLDSLSFGD 95


>d1e58a_ c.60.1.1 (A:) Phosphoglycerate mutase {Escherichia coli
           [TaxId: 562]}
          Length = 247

 Score = 26.8 bits (58), Expect = 1.7
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 3/30 (10%)

Query: 173 RHGHSH---ENQVWGWNDEDLTEEDRMLAE 199
           RHG S    EN+  GW D DL+E+    A+
Sbjct: 9   RHGESQWNKENRFTGWYDVDLSEKGVSEAK 38


>d1xq9a_ c.60.1.1 (A:) Phosphoglycerate mutase {Plasmodium
           falciparum [TaxId: 5833]}
          Length = 241

 Score = 26.1 bits (56), Expect = 2.8
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 3/30 (10%)

Query: 173 RHGHS---HENQVWGWNDEDLTEEDRMLAE 199
           RHG S    EN+  GW D  L+E+    A 
Sbjct: 10  RHGESTWNKENKFTGWTDVPLSEKGEEEAI 39


>d1qhfa_ c.60.1.1 (A:) Phosphoglycerate mutase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 240

 Score = 26.1 bits (56), Expect = 2.9
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 3/30 (10%)

Query: 173 RHGHS---HENQVWGWNDEDLTEEDRMLAE 199
           RHG S    +N   GW D  L+ + +  A 
Sbjct: 7   RHGQSEWNEKNLFTGWVDVKLSAKGQQEAA 36


>d2hhja1 c.60.1.1 (A:3-250) Phosphoglycerate mutase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 248

 Score = 25.7 bits (55), Expect = 3.8
 Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 3/30 (10%)

Query: 173 RHGHS---HENQVWGWNDEDLTEEDRMLAE 199
           RHG      EN+   W D+ L  E    A 
Sbjct: 8   RHGEGAWNKENRFCSWVDQKLNSEGMEEAR 37


>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581
          {Streptococcus pyogenes [TaxId: 1314]}
          Length = 112

 Score = 25.0 bits (54), Expect = 4.2
 Identities = 4/30 (13%), Positives = 12/30 (40%)

Query: 6  KHISSSENSSVAFLAFGEGWHNYHHTFPWD 35
          + +   ++  +   +  +G     H+ P D
Sbjct: 29 RTLVQRQDLGITVFSLDKGQEIGRHSSPGD 58



 Score = 24.3 bits (52), Expect = 7.6
 Identities = 4/28 (14%), Positives = 11/28 (39%)

Query: 96  ISSSENSSVAFLAFGEGWHNYHHTFPWD 123
           +   ++  +   +  +G     H+ P D
Sbjct: 31  LVQRQDLGITVFSLDKGQEIGRHSSPGD 58


>d1riia_ c.60.1.1 (A:) Phosphoglycerate mutase {Mycobacterium
           tuberculosis [TaxId: 1773]}
          Length = 243

 Score = 25.3 bits (54), Expect = 5.5
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 3/30 (10%)

Query: 173 RHGHS---HENQVWGWNDEDLTEEDRMLAE 199
           RHG S     N   GW D  LT++ +  A 
Sbjct: 10  RHGESDWNALNLFTGWVDVGLTDKGQAEAV 39


>d1h2ea_ c.60.1.1 (A:) Broad specificity phosphatase PhoE (YhfR)
           {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 207

 Score = 24.2 bits (51), Expect = 9.7
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%)

Query: 173 RHGHSH---ENQVWGWNDEDLTEEDRMLAE 199
           RHG +    E ++ GW D  LTE+ R  A 
Sbjct: 8   RHGETKWNVERRMQGWQDSPLTEKGRQDAM 37


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.131    0.436 

Gapped
Lambda     K      H
   0.267   0.0479    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 822,140
Number of extensions: 35975
Number of successful extensions: 123
Number of sequences better than 10.0: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 30
Length of query: 199
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 118
Effective length of database: 1,295,466
Effective search space: 152864988
Effective search space used: 152864988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.6 bits)