BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1304
(184 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3T067|SCPDL_BOVIN Saccharopine dehydrogenase-like oxidoreductase OS=Bos taurus
GN=SCCPDH PE=2 SV=1
Length = 429
Score = 87.0 bits (214), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 55/76 (72%)
Query: 105 DIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFM 164
++ III D+ N +S+ MAK+ V+LNCVGPY +YGE V+KACIE T +DI+GEP F+
Sbjct: 71 EVGIIICDITNPASLDEMAKQATVVLNCVGPYRFYGEPVIKACIENGTSCIDISGEPQFL 130
Query: 165 EYMQYEYNTRAQESEV 180
E M ++Y+ +A E V
Sbjct: 131 ELMYWKYHEKAAEKGV 146
>sp|Q6AY30|SCPDL_RAT Saccharopine dehydrogenase-like oxidoreductase OS=Rattus norvegicus
GN=Sccpdh PE=2 SV=1
Length = 429
Score = 86.7 bits (213), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 53/76 (69%)
Query: 105 DIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFM 164
++ III D+ N +S+ MAKK ++LNCVGPY +YGE VVKACIE T +DI GEP F+
Sbjct: 71 EVGIIICDISNPASLDEMAKKATLVLNCVGPYRFYGEPVVKACIENGTSCIDICGEPQFL 130
Query: 165 EYMQYEYNTRAQESEV 180
E M +Y+ +A E V
Sbjct: 131 ELMHVKYHEKAAEKGV 146
>sp|Q8R127|SCPDL_MOUSE Saccharopine dehydrogenase-like oxidoreductase OS=Mus musculus
GN=Sccpdh PE=2 SV=1
Length = 429
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 54/76 (71%)
Query: 105 DIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFM 164
++ +II D+ N +S+ MAK+ +++LNCVGPY +YGE VVKACIE T +DI GEP F+
Sbjct: 71 EVGVIICDISNPASLDEMAKQAKLVLNCVGPYRFYGEPVVKACIENGTSCIDICGEPQFL 130
Query: 165 EYMQYEYNTRAQESEV 180
E M +Y+ +A E V
Sbjct: 131 ELMHAKYHEKAAEKGV 146
>sp|Q8NBX0|SCPDL_HUMAN Saccharopine dehydrogenase-like oxidoreductase OS=Homo sapiens
GN=SCCPDH PE=1 SV=1
Length = 429
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 54/76 (71%)
Query: 105 DIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFM 164
++ III D+ N +S+ MAK+ V+LNCVGPY +YGE V+KACIE +DI+GEP F+
Sbjct: 71 EVGIIICDIANPASLDEMAKQATVVLNCVGPYRFYGEPVIKACIENGASCIDISGEPQFL 130
Query: 165 EYMQYEYNTRAQESEV 180
E MQ +Y+ +A + V
Sbjct: 131 ELMQLKYHEKAADKGV 146
>sp|Q5R5C9|SCPDL_PONAB Saccharopine dehydrogenase-like oxidoreductase OS=Pongo abelii
GN=SCCPDH PE=2 SV=1
Length = 429
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 53/76 (69%)
Query: 105 DIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFM 164
++ III D+ N +S+ MAK+ V+ NCVGPY +YGE V+KACIE +DI+GEP F+
Sbjct: 71 EVGIIICDIANPASLDEMAKQATVVPNCVGPYRFYGEPVIKACIENGASCIDISGEPQFL 130
Query: 165 EYMQYEYNTRAQESEV 180
E MQ +Y+ +A + V
Sbjct: 131 ELMQLKYHEKAADKGV 146
>sp|Q8LGI2|SCPDL_ARATH Probable mitochondrial saccharopine dehydrogenase-like
oxidoreductase At5g39410 OS=Arabidopsis thaliana
GN=At5g39410 PE=1 SV=2
Length = 454
Score = 69.7 bits (169), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 49/73 (67%)
Query: 106 IPIIIADLKNESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFME 165
+ I+ AD + S+ + + ++ILNCVGP+ +G+ VV AC ++ ++DI+GEP FME
Sbjct: 72 VAILTADTSDPDSLRRLCTQTKLILNCVGPFRIHGDPVVSACADSGCDYLDISGEPEFME 131
Query: 166 YMQYEYNTRAQES 178
M+ Y+ RA+E+
Sbjct: 132 RMEANYHDRAEET 144
>sp|Q7D745|Y2525_MYCTU Putative trans-acting enoyl reductase MT2525 OS=Mycobacterium
tuberculosis GN=MT2525 PE=3 SV=2
Length = 419
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 91 LLGARDCLYRENLIDIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEA 150
+L R+ L E+ PI+ AD S++ MA + +V++ VGPYT YG +V AC A
Sbjct: 46 VLAVREAL-GESAQTWPILTADASLPSTLQAMAARAQVVVTTVGPYTRYGLPLVAACAAA 104
Query: 151 KTHHVDITGEPYFMEYMQYEYNTRAQES 178
T + D+TGEP FM Y+ +A ++
Sbjct: 105 GTDYADLTGEPMFMRNSIDLYHKQAADT 132
>sp|O53176|Y2449_MYCTU Putative trans-acting enoyl reductase Rv2449c OS=Mycobacterium
tuberculosis GN=Rv2449c PE=1 SV=3
Length = 419
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 91 LLGARDCLYRENLIDIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEA 150
+L R+ L E+ PI+ AD S++ MA + +V++ VGPYT YG +V AC A
Sbjct: 46 VLAVREAL-GESAQTWPILTADASLPSTLQAMAARAQVVVTTVGPYTRYGLPLVAACAAA 104
Query: 151 KTHHVDITGEPYFMEYMQYEYNTRAQES 178
T + D+TGEP FM Y+ +A ++
Sbjct: 105 GTDYADLTGEPMFMRNSIDLYHKQAADT 132
>sp|P95139|TAER_MYCTU Trans-acting enoyl reductase OS=Mycobacterium tuberculosis
GN=Rv2953 PE=1 SV=1
Length = 418
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 38/62 (61%)
Query: 102 NLIDIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEP 161
N D P+I+AD ++ MA + +V+L VGPYT YG +V AC +A T + D+TGE
Sbjct: 56 NAADWPLILADASQPLTLEAMAARAQVVLTTVGPYTRYGLPLVAACAKAGTDYADLTGEL 115
Query: 162 YF 163
F
Sbjct: 116 MF 117
>sp|A5U6W1|TAER_MYCTA Trans-acting enoyl reductase OS=Mycobacterium tuberculosis (strain
ATCC 25177 / H37Ra) GN=MRA_2980 PE=3 SV=1
Length = 418
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 38/62 (61%)
Query: 102 NLIDIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEP 161
N D P+I+AD ++ MA + +V+L VGPYT YG +V AC +A T + D+TGE
Sbjct: 56 NAADWPLILADASQPLTLEAMAARAQVVLTTVGPYTRYGLPLVAACAKAGTDYADLTGEL 115
Query: 162 YF 163
F
Sbjct: 116 MF 117
>sp|A1KMU7|TAER_MYCBP Trans-acting enoyl reductase OS=Mycobacterium bovis (strain BCG /
Pasteur 1173P2) GN=BCG_2974 PE=3 SV=1
Length = 418
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 38/62 (61%)
Query: 102 NLIDIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEP 161
N D P+I+AD ++ MA + +V+L VGPYT YG +V AC +A T + D+TGE
Sbjct: 56 NAADWPLILADASQPLTLEAMAARAQVVLTTVGPYTRYGLPLVAACAKAGTDYADLTGEL 115
Query: 162 YF 163
F
Sbjct: 116 MF 117
>sp|Q7TXK2|TAER_MYCBO Trans-acting enoyl reductase OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=Mb2977 PE=3 SV=1
Length = 418
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 38/62 (61%)
Query: 102 NLIDIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEP 161
N D P+I+AD ++ MA + +V+L VGPYT YG +V AC +A T + D+TGE
Sbjct: 56 NAADWPLILADASQPLTLEAMAARAQVVLTTVGPYTRYGLPLVAACAKAGTDYADLTGEL 115
Query: 162 YF 163
F
Sbjct: 116 MF 117
>sp|Q9CD87|TAER_MYCLE Trans-acting enoyl reductase OS=Mycobacterium leprae (strain TN)
GN=ML0129 PE=3 SV=1
Length = 418
Score = 60.5 bits (145), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 38/67 (56%)
Query: 97 CLYRENLIDIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVD 156
L N D P+I+AD S++ MA + +V+L VGPYT YG +V AC T + D
Sbjct: 51 ALLGPNAQDWPLIVADASQPSTLEAMAGRAQVVLTTVGPYTRYGLPLVAACARTGTDYAD 110
Query: 157 ITGEPYF 163
+TGE F
Sbjct: 111 LTGELMF 117
>sp|A0PQ21|TAER_MYCUA Trans-acting enoyl reductase OS=Mycobacterium ulcerans (strain
Agy99) GN=MUL_2000 PE=3 SV=1
Length = 418
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 105 DIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYF 163
D P+++AD +++ MA + +VIL VGPYT YG +V AC +A T + D+TGE F
Sbjct: 59 DWPLVVADASQPATLEEMATRAQVILTTVGPYTRYGLPLVAACAKAGTDYADLTGELMF 117
>sp|Q54BD8|HS7C4_DICDI Heat shock cognate 70 kDa protein 4 OS=Dictyostelium discoideum
GN=DDB_G0293678 PE=3 SV=1
Length = 569
Score = 34.3 bits (77), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 14/109 (12%)
Query: 11 KPLLTQILFEGEYLIFSKGTVTAKVLSSRKQRKEDRIGESQPFRGQTLSVQDKIRPGRGS 70
KPL+ Q+ F+GE FS +++ VLS K+ E +GE P ++V P +
Sbjct: 100 KPLI-QVDFKGETKTFSPEEISSMVLSKMKEIVEQHLGE--PVTDAVITV-----PAYFN 151
Query: 71 NPRPSAYKADAPTSNLTRLGLLGARDC------LYRENLIDIPIIIADL 113
+ + A K SNL L ++ L+R + D+ ++I DL
Sbjct: 152 DRQRHATKYAGTISNLNVLRIINEPTATAIAYGLHRRGIDDMKVLIIDL 200
>sp|P70057|KCNQ1_XENLA Potassium voltage-gated channel subfamily KQT member 1 (Fragment)
OS=Xenopus laevis GN=kcnq1 PE=2 SV=1
Length = 377
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%)
Query: 37 SSRKQRKEDRIGESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRL 89
SS QR+EDR S + +TL D RP +PR S Y P + T +
Sbjct: 20 SSNGQRQEDRQANSFELKRETLVATDPPRPTINLDPRVSIYSGRRPLLSRTNI 72
>sp|Q8RCB4|SECA_THETN Protein translocase subunit SecA OS=Thermoanaerobacter
tengcongensis (strain DSM 15242 / JCM 11007 / NBRC
100824 / MB4) GN=secA PE=3 SV=2
Length = 898
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 5/110 (4%)
Query: 27 SKGTVTAKVLSSRKQRKEDRIGESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNL 86
KG V +R D +G+ F G ++ V I G R AY AD
Sbjct: 122 GKGVHIVTVNDYLAKRDRDWMGKIYEFLGLSVGV---ILHDMGPAERKKAYAADITYGTN 178
Query: 87 TRLGLLGARD--CLYRENLIDIPIIIADLKNESSILIMAKKCRVILNCVG 134
G RD +Y+E+++ + A + SILI + +I++ VG
Sbjct: 179 NEFGFDYLRDNMVIYKEDMVQRELNYAIIDEVDSILIDEARTPLIISGVG 228
>sp|P45357|HXUC2_HAEIF Heme/hemopexin utilization protein C OS=Haemophilus influenzae
GN=hxuC PE=3 SV=1
Length = 725
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 60 VQDKIRPGRGSNPRPSAYKADAPTSNLTRLGL-LGARDCLYRENLIDIPIIIADLKNESS 118
++DKIR RG+N + + ++AD +N G+ L A L+ E L+ P + D + SS
Sbjct: 376 MRDKIRTERGTNNKDAQFRADPYNANSNTTGVYLIAHIPLFGEKLLLSPSVRYDHYDTSS 435
Query: 119 ILIMAKKCRVILNCVGPYTW 138
+ K L+ TW
Sbjct: 436 KTVKYKDNH--LSPATKLTW 453
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,004,395
Number of Sequences: 539616
Number of extensions: 2447330
Number of successful extensions: 4963
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 4948
Number of HSP's gapped (non-prelim): 27
length of query: 184
length of database: 191,569,459
effective HSP length: 110
effective length of query: 74
effective length of database: 132,211,699
effective search space: 9783665726
effective search space used: 9783665726
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)