Query psy1304
Match_columns 184
No_of_seqs 193 out of 1069
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 17:56:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1304.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1304hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2733|consensus 99.9 6.6E-28 1.4E-32 218.1 11.3 124 43-184 5-142 (423)
2 COG3268 Uncharacterized conser 99.9 3.5E-23 7.5E-28 186.2 7.1 125 40-184 3-130 (382)
3 PF03435 Saccharop_dh: Sacchar 99.7 1.6E-17 3.5E-22 147.0 9.0 113 47-184 3-120 (386)
4 COG1748 LYS9 Saccharopine dehy 99.4 1.8E-13 4E-18 125.1 8.1 102 74-184 16-121 (389)
5 PLN02819 lysine-ketoglutarate 98.9 5E-09 1.1E-13 105.8 7.9 123 51-183 565-700 (1042)
6 PF13460 NAD_binding_10: NADH( 98.0 1.6E-05 3.4E-10 62.3 5.5 91 47-158 3-97 (183)
7 PF01073 3Beta_HSD: 3-beta hyd 97.8 8.9E-05 1.9E-09 64.2 7.5 90 47-154 2-110 (280)
8 CHL00194 ycf39 Ycf39; Provisio 97.7 0.00029 6.3E-09 60.7 9.4 93 47-159 5-110 (317)
9 PF05368 NmrA: NmrA-like famil 97.6 9.4E-05 2E-09 60.6 4.3 77 74-154 14-97 (233)
10 PLN03209 translocon at the inn 97.1 0.00074 1.6E-08 65.2 5.0 101 51-158 76-207 (576)
11 KOG2865|consensus 96.9 0.002 4.3E-08 58.8 6.2 57 102-158 107-176 (391)
12 TIGR01181 dTDP_gluc_dehyt dTDP 96.9 0.0034 7.4E-08 52.2 7.0 93 47-157 4-123 (317)
13 PLN02657 3,8-divinyl protochlo 96.8 0.005 1.1E-07 55.6 8.0 55 104-158 111-181 (390)
14 TIGR03466 HpnA hopanoid-associ 96.8 0.0073 1.6E-07 50.8 8.4 87 47-153 5-106 (328)
15 PLN02214 cinnamoyl-CoA reducta 96.8 0.0038 8.3E-08 54.7 6.9 49 105-153 61-120 (342)
16 TIGR03649 ergot_EASG ergot alk 96.7 0.005 1.1E-07 51.8 6.8 90 47-158 4-104 (285)
17 KOG0172|consensus 96.5 0.0049 1.1E-07 57.7 5.8 101 74-183 17-120 (445)
18 TIGR03589 PseB UDP-N-acetylglu 96.5 0.0092 2E-07 51.9 7.1 83 74-158 20-124 (324)
19 PRK06179 short chain dehydroge 96.4 0.0058 1.3E-07 50.6 5.0 58 74-136 20-84 (270)
20 PLN02427 UDP-apiose/xylose syn 96.4 0.01 2.2E-07 52.4 6.7 94 46-158 18-135 (386)
21 TIGR01472 gmd GDP-mannose 4,6- 96.3 0.021 4.5E-07 49.5 8.1 86 47-152 5-121 (343)
22 cd01065 NAD_bind_Shikimate_DH 96.3 0.0016 3.5E-08 50.1 0.9 116 53-183 17-136 (155)
23 PRK00048 dihydrodipicolinate r 96.0 0.011 2.4E-07 50.8 5.0 64 115-182 50-113 (257)
24 PLN02662 cinnamyl-alcohol dehy 96.0 0.022 4.7E-07 48.3 6.7 50 104-153 55-120 (322)
25 TIGR01179 galE UDP-glucose-4-e 96.0 0.021 4.5E-07 47.6 6.4 52 105-156 48-118 (328)
26 PRK15181 Vi polysaccharide bio 96.0 0.019 4.2E-07 50.2 6.5 91 46-156 19-138 (348)
27 TIGR01214 rmlD dTDP-4-dehydror 96.0 0.017 3.6E-07 48.2 5.8 78 47-158 4-99 (287)
28 PLN00198 anthocyanidin reducta 96.0 0.013 2.9E-07 50.5 5.2 97 48-151 2-121 (338)
29 PRK09009 C factor cell-cell si 95.9 0.019 4E-07 46.5 5.7 61 74-137 16-79 (235)
30 PRK07856 short chain dehydroge 95.9 0.013 2.9E-07 48.1 4.6 76 53-136 4-86 (252)
31 PLN02695 GDP-D-mannose-3',5'-e 95.8 0.029 6.3E-07 50.0 7.1 92 46-157 25-135 (370)
32 TIGR00715 precor6x_red precorr 95.8 0.032 6.9E-07 48.7 6.9 52 106-157 44-98 (256)
33 COG3967 DltE Short-chain dehyd 95.8 0.0094 2E-07 52.1 3.5 80 53-139 3-92 (245)
34 PLN02653 GDP-mannose 4,6-dehyd 95.7 0.057 1.2E-06 46.6 8.0 87 46-152 10-126 (340)
35 COG1091 RfbD dTDP-4-dehydrorha 95.6 0.013 2.8E-07 52.2 3.9 47 111-158 34-99 (281)
36 PRK06079 enoyl-(acyl carrier p 95.6 0.0096 2.1E-07 49.5 2.9 82 50-136 2-94 (252)
37 PRK06182 short chain dehydroge 95.5 0.021 4.5E-07 47.6 4.5 59 74-136 19-85 (273)
38 PRK11908 NAD-dependent epimera 95.5 0.037 8.1E-07 48.0 6.2 92 47-157 6-116 (347)
39 PLN02986 cinnamyl-alcohol dehy 95.5 0.021 4.6E-07 48.8 4.6 49 104-152 56-120 (322)
40 PF01370 Epimerase: NAD depend 95.4 0.015 3.2E-07 46.5 3.2 87 47-152 3-108 (236)
41 PLN02260 probable rhamnose bio 95.4 0.059 1.3E-06 51.5 7.6 94 47-158 11-131 (668)
42 PRK05865 hypothetical protein; 95.3 0.098 2.1E-06 52.9 9.4 91 47-159 5-103 (854)
43 PRK09186 flagellin modificatio 95.3 0.032 7E-07 45.4 5.0 59 74-136 20-94 (256)
44 PRK06398 aldose dehydrogenase; 95.3 0.038 8.2E-07 46.0 5.3 73 52-135 3-82 (258)
45 PLN02650 dihydroflavonol-4-red 95.2 0.055 1.2E-06 47.0 6.5 85 47-151 10-118 (351)
46 PLN02240 UDP-glucose 4-epimera 95.2 0.082 1.8E-06 45.4 7.5 54 104-157 58-130 (352)
47 PLN02253 xanthoxin dehydrogena 95.1 0.021 4.6E-07 47.6 3.4 77 51-136 14-105 (280)
48 PRK07326 short chain dehydroge 95.1 0.025 5.4E-07 45.6 3.7 60 74-137 22-94 (237)
49 PLN00016 RNA-binding protein; 95.1 0.039 8.4E-07 49.0 5.2 87 49-158 63-164 (378)
50 PRK05876 short chain dehydroge 95.1 0.031 6.8E-07 47.3 4.4 77 52-135 3-93 (275)
51 TIGR02197 heptose_epim ADP-L-g 95.0 0.1 2.2E-06 43.8 7.2 81 74-158 14-113 (314)
52 PRK06138 short chain dehydroge 94.9 0.017 3.7E-07 46.8 2.3 59 74-136 21-92 (252)
53 PRK06523 short chain dehydroge 94.9 0.061 1.3E-06 44.1 5.5 75 52-135 6-87 (260)
54 PRK13304 L-aspartate dehydroge 94.9 0.055 1.2E-06 46.7 5.4 59 119-183 55-117 (265)
55 PRK05867 short chain dehydroge 94.8 0.028 6.2E-07 46.1 3.3 78 53-137 7-98 (253)
56 PRK07024 short chain dehydroge 94.8 0.023 4.9E-07 46.9 2.7 59 74-136 18-89 (257)
57 PRK08264 short chain dehydroge 94.7 0.06 1.3E-06 43.5 5.0 59 74-135 22-83 (238)
58 PRK07231 fabG 3-ketoacyl-(acyl 94.7 0.016 3.5E-07 46.8 1.6 59 74-136 21-92 (251)
59 PRK05866 short chain dehydroge 94.7 0.041 8.9E-07 47.2 4.1 79 51-136 36-128 (293)
60 PRK05854 short chain dehydroge 94.6 0.027 5.9E-07 48.8 3.0 78 52-136 11-104 (313)
61 PRK06196 oxidoreductase; Provi 94.6 0.035 7.7E-07 47.7 3.6 79 51-136 22-110 (315)
62 PRK07478 short chain dehydroge 94.6 0.039 8.5E-07 45.2 3.6 77 53-136 4-94 (254)
63 KOG1502|consensus 94.5 0.053 1.2E-06 49.4 4.7 48 104-151 57-119 (327)
64 PRK13394 3-hydroxybutyrate deh 94.5 0.032 6.8E-07 45.5 2.9 59 74-136 23-95 (262)
65 PRK06171 sorbitol-6-phosphate 94.5 0.064 1.4E-06 44.3 4.8 73 53-136 7-88 (266)
66 PRK08265 short chain dehydroge 94.5 0.036 7.8E-07 46.1 3.2 77 53-136 4-91 (261)
67 PRK07453 protochlorophyllide o 94.5 0.056 1.2E-06 46.5 4.5 59 74-136 22-94 (322)
68 PRK08309 short chain dehydroge 94.5 0.12 2.5E-06 42.4 6.1 83 74-162 15-115 (177)
69 PRK05884 short chain dehydroge 94.5 0.031 6.7E-07 45.8 2.7 59 74-136 16-80 (223)
70 PRK08125 bifunctional UDP-gluc 94.4 0.093 2E-06 50.5 6.3 55 104-158 360-431 (660)
71 PLN02989 cinnamyl-alcohol dehy 94.4 0.064 1.4E-06 45.8 4.6 47 104-150 56-118 (325)
72 PF04321 RmlD_sub_bind: RmlD s 94.4 0.034 7.3E-07 48.0 2.9 50 110-159 34-101 (286)
73 PRK08267 short chain dehydroge 94.3 0.047 1E-06 44.9 3.5 59 74-136 17-88 (260)
74 PRK07533 enoyl-(acyl carrier p 94.2 0.055 1.2E-06 45.1 3.8 81 51-136 6-99 (258)
75 PRK12320 hypothetical protein; 94.2 0.12 2.6E-06 51.2 6.6 90 47-159 5-102 (699)
76 PRK12367 short chain dehydroge 94.2 0.096 2.1E-06 44.2 5.2 50 87-136 39-90 (245)
77 PRK06172 short chain dehydroge 94.1 0.038 8.2E-07 45.2 2.6 77 53-136 5-95 (253)
78 PF03447 NAD_binding_3: Homose 94.1 0.15 3.2E-06 38.1 5.5 62 119-182 51-114 (117)
79 PRK09987 dTDP-4-dehydrorhamnos 94.1 0.12 2.5E-06 44.5 5.6 51 109-159 36-104 (299)
80 COG1086 Predicted nucleoside-d 94.1 0.14 3E-06 50.0 6.6 109 39-154 234-370 (588)
81 PRK07370 enoyl-(acyl carrier p 94.1 0.12 2.7E-06 43.1 5.6 77 53-136 4-98 (258)
82 PLN00141 Tic62-NAD(P)-related 94.1 0.23 5E-06 41.2 7.1 76 74-153 33-125 (251)
83 PRK06463 fabG 3-ketoacyl-(acyl 94.0 0.087 1.9E-06 43.3 4.6 77 53-136 5-90 (255)
84 PRK08643 acetoin reductase; Va 94.0 0.062 1.3E-06 44.0 3.6 59 74-136 18-90 (256)
85 PRK07666 fabG 3-ketoacyl-(acyl 94.0 0.051 1.1E-06 44.1 3.0 60 74-137 23-96 (239)
86 TIGR02632 RhaD_aldol-ADH rhamn 94.0 0.097 2.1E-06 50.9 5.4 107 21-136 380-504 (676)
87 PRK07890 short chain dehydroge 94.0 0.061 1.3E-06 43.9 3.5 59 74-136 21-93 (258)
88 PRK07063 short chain dehydroge 94.0 0.082 1.8E-06 43.5 4.3 77 53-136 5-97 (260)
89 PRK07201 short chain dehydroge 94.0 0.1 2.2E-06 49.1 5.3 88 47-153 5-118 (657)
90 PRK06200 2,3-dihydroxy-2,3-dih 93.9 0.072 1.6E-06 44.0 3.9 59 74-136 22-91 (263)
91 PRK06949 short chain dehydroge 93.9 0.098 2.1E-06 42.6 4.5 79 49-136 3-97 (258)
92 TIGR01850 argC N-acetyl-gamma- 93.9 0.08 1.7E-06 47.6 4.4 92 47-162 5-103 (346)
93 PRK06197 short chain dehydroge 93.7 0.075 1.6E-06 45.3 3.8 77 53-136 14-106 (306)
94 PRK06057 short chain dehydroge 93.7 0.073 1.6E-06 43.8 3.5 77 53-136 5-90 (255)
95 PRK06482 short chain dehydroge 93.7 0.1 2.2E-06 43.4 4.4 59 74-136 18-87 (276)
96 PRK06124 gluconate 5-dehydroge 93.7 0.055 1.2E-06 44.3 2.8 75 53-136 9-99 (256)
97 PRK05717 oxidoreductase; Valid 93.7 0.058 1.3E-06 44.3 2.9 80 50-136 5-95 (255)
98 PRK08177 short chain dehydroge 93.7 0.14 3E-06 41.4 5.1 59 74-136 17-82 (225)
99 PRK08220 2,3-dihydroxybenzoate 93.7 0.14 2.9E-06 41.7 5.0 57 74-136 24-87 (252)
100 PRK08862 short chain dehydroge 93.7 0.087 1.9E-06 43.6 3.9 76 53-135 3-93 (227)
101 PRK06180 short chain dehydroge 93.6 0.088 1.9E-06 44.1 4.0 59 74-136 20-89 (277)
102 PRK08416 7-alpha-hydroxysteroi 93.6 0.1 2.2E-06 43.2 4.4 77 51-136 4-98 (260)
103 PRK07067 sorbitol dehydrogenas 93.6 0.075 1.6E-06 43.6 3.5 59 74-136 22-91 (257)
104 PRK07454 short chain dehydroge 93.6 0.058 1.3E-06 43.8 2.7 59 74-136 22-94 (241)
105 PRK09291 short chain dehydroge 93.6 0.16 3.4E-06 41.4 5.2 59 74-136 18-84 (257)
106 PRK06505 enoyl-(acyl carrier p 93.6 0.075 1.6E-06 45.0 3.5 77 52-136 4-96 (271)
107 PRK08415 enoyl-(acyl carrier p 93.6 0.11 2.4E-06 44.3 4.5 78 53-135 3-93 (274)
108 PRK09135 pteridine reductase; 93.5 0.099 2.1E-06 42.0 4.0 59 74-136 22-96 (249)
109 COG0451 WcaG Nucleoside-diphos 93.5 0.31 6.8E-06 40.5 7.0 87 47-153 5-109 (314)
110 PRK08251 short chain dehydroge 93.5 0.089 1.9E-06 42.7 3.7 58 74-135 18-91 (248)
111 PRK10675 UDP-galactose-4-epime 93.5 0.36 7.9E-06 41.2 7.6 49 105-153 51-117 (338)
112 PLN02896 cinnamyl-alcohol dehy 93.5 0.11 2.3E-06 45.4 4.3 70 47-136 15-90 (353)
113 COG2910 Putative NADH-flavin r 93.5 0.24 5.2E-06 42.7 6.3 48 94-142 32-79 (211)
114 PRK07825 short chain dehydroge 93.5 0.069 1.5E-06 44.3 3.0 59 74-136 21-89 (273)
115 PF01118 Semialdhyde_dh: Semia 93.5 0.12 2.6E-06 39.1 4.1 90 47-161 4-100 (121)
116 PRK08339 short chain dehydroge 93.5 0.11 2.4E-06 43.5 4.3 77 53-136 6-96 (263)
117 PRK07062 short chain dehydroge 93.5 0.071 1.5E-06 44.0 3.1 77 53-136 6-98 (265)
118 PRK00436 argC N-acetyl-gamma-g 93.4 0.11 2.5E-06 46.5 4.6 40 122-163 65-104 (343)
119 PRK05993 short chain dehydroge 93.4 0.064 1.4E-06 45.1 2.8 59 74-136 20-87 (277)
120 PRK07889 enoyl-(acyl carrier p 93.4 0.12 2.6E-06 43.1 4.4 79 51-136 3-96 (256)
121 PRK12828 short chain dehydroge 93.4 0.19 4.1E-06 40.1 5.3 59 74-136 23-93 (239)
122 PRK08628 short chain dehydroge 93.3 0.14 3E-06 42.0 4.5 76 53-135 5-93 (258)
123 PRK06194 hypothetical protein; 93.3 0.088 1.9E-06 43.9 3.4 59 74-136 22-94 (287)
124 PLN02725 GDP-4-keto-6-deoxyman 93.3 0.25 5.5E-06 41.3 6.1 47 110-156 32-98 (306)
125 PRK07523 gluconate 5-dehydroge 93.3 0.055 1.2E-06 44.4 2.1 77 53-136 8-98 (255)
126 PRK05693 short chain dehydroge 93.2 0.14 3.1E-06 42.6 4.6 58 74-135 17-82 (274)
127 PRK07577 short chain dehydroge 93.2 0.26 5.7E-06 39.5 6.0 55 74-136 19-79 (234)
128 COG4221 Short-chain alcohol de 93.2 0.091 2E-06 46.3 3.5 61 74-138 22-94 (246)
129 PRK07424 bifunctional sterol d 93.2 0.099 2.2E-06 48.4 3.8 79 49-136 172-256 (406)
130 TIGR01746 Thioester-redct thio 93.2 0.22 4.8E-06 42.1 5.7 89 47-153 4-129 (367)
131 PRK10538 malonic semialdehyde 93.1 0.13 2.8E-06 42.2 4.1 58 74-135 16-84 (248)
132 PRK06125 short chain dehydroge 93.1 0.17 3.7E-06 41.7 4.8 77 53-136 5-92 (259)
133 PRK07814 short chain dehydroge 93.1 0.14 3.1E-06 42.4 4.4 76 53-135 8-97 (263)
134 PRK12481 2-deoxy-D-gluconate 3 93.1 0.1 2.2E-06 43.2 3.5 75 53-136 6-94 (251)
135 PRK05565 fabG 3-ketoacyl-(acyl 93.1 0.067 1.5E-06 43.0 2.3 59 74-136 21-94 (247)
136 COG0300 DltE Short-chain dehyd 93.0 0.079 1.7E-06 46.8 2.9 66 74-140 18-98 (265)
137 PRK08936 glucose-1-dehydrogena 93.0 0.12 2.5E-06 42.7 3.7 77 52-135 4-95 (261)
138 PRK06114 short chain dehydroge 93.0 0.13 2.9E-06 42.3 4.1 77 53-136 6-97 (254)
139 PLN02686 cinnamoyl-CoA reducta 93.0 0.15 3.2E-06 45.4 4.6 48 105-152 108-172 (367)
140 PRK05650 short chain dehydroge 93.0 0.18 4E-06 41.8 4.9 59 74-136 16-88 (270)
141 PRK08226 short chain dehydroge 92.9 0.17 3.6E-06 41.6 4.5 58 74-135 22-92 (263)
142 PRK10217 dTDP-glucose 4,6-dehy 92.9 0.2 4.4E-06 43.3 5.2 45 105-149 52-114 (355)
143 PRK06841 short chain dehydroge 92.9 0.091 2E-06 42.9 2.9 77 53-136 13-100 (255)
144 PRK08690 enoyl-(acyl carrier p 92.9 0.14 3.1E-06 42.8 4.1 78 53-137 4-96 (261)
145 PRK05875 short chain dehydroge 92.9 0.13 2.8E-06 42.7 3.8 58 74-135 23-96 (276)
146 PLN02583 cinnamoyl-CoA reducta 92.9 0.43 9.3E-06 40.8 7.1 85 46-150 10-117 (297)
147 PRK08263 short chain dehydroge 92.8 0.093 2E-06 43.8 2.9 59 74-136 19-88 (275)
148 TIGR00036 dapB dihydrodipicoli 92.8 0.14 3.1E-06 44.3 4.2 57 122-183 65-122 (266)
149 TIGR03325 BphB_TodD cis-2,3-di 92.8 0.11 2.4E-06 42.9 3.4 59 74-136 21-90 (262)
150 PRK07984 enoyl-(acyl carrier p 92.8 0.1 2.2E-06 44.1 3.2 78 53-135 4-94 (262)
151 PRK12826 3-ketoacyl-(acyl-carr 92.8 0.12 2.7E-06 41.5 3.5 60 74-137 22-95 (251)
152 PRK13302 putative L-aspartate 92.8 0.37 8E-06 41.9 6.6 60 119-183 61-120 (271)
153 PRK08594 enoyl-(acyl carrier p 92.8 0.18 4E-06 42.1 4.6 77 53-136 5-98 (257)
154 PRK06935 2-deoxy-D-gluconate 3 92.7 0.14 3.1E-06 42.1 3.8 79 51-136 11-102 (258)
155 PRK05872 short chain dehydroge 92.7 0.095 2.1E-06 44.7 2.9 78 52-136 6-96 (296)
156 PRK08063 enoyl-(acyl carrier p 92.7 0.099 2.1E-06 42.4 2.8 59 74-135 20-92 (250)
157 PRK06181 short chain dehydroge 92.7 0.2 4.3E-06 41.2 4.6 60 74-137 17-90 (263)
158 PRK12428 3-alpha-hydroxysteroi 92.7 0.14 3.1E-06 42.2 3.8 54 75-136 2-59 (241)
159 PRK08589 short chain dehydroge 92.6 0.13 2.9E-06 43.0 3.6 77 53-136 4-93 (272)
160 COG0702 Predicted nucleoside-d 92.6 1.2 2.6E-05 36.3 9.1 90 48-157 6-105 (275)
161 PRK12429 3-hydroxybutyrate deh 92.6 0.17 3.8E-06 40.9 4.1 59 74-136 20-92 (258)
162 cd01078 NAD_bind_H4MPT_DH NADP 92.6 0.14 3E-06 41.5 3.5 100 53-161 26-132 (194)
163 PLN02968 Probable N-acetyl-gam 92.5 0.14 3E-06 47.0 3.8 94 46-161 42-137 (381)
164 PRK06139 short chain dehydroge 92.5 0.24 5.2E-06 43.8 5.2 58 74-135 23-94 (330)
165 PRK06947 glucose-1-dehydrogena 92.5 0.17 3.7E-06 41.1 4.0 33 104-136 52-91 (248)
166 PRK05653 fabG 3-ketoacyl-(acyl 92.4 0.064 1.4E-06 42.8 1.4 59 74-136 21-93 (246)
167 PRK08277 D-mannonate oxidoredu 92.4 0.13 2.8E-06 42.8 3.3 59 74-136 26-98 (278)
168 PRK08278 short chain dehydroge 92.4 0.3 6.6E-06 41.0 5.5 58 74-135 22-100 (273)
169 PF01113 DapB_N: Dihydrodipico 92.4 0.061 1.3E-06 41.4 1.2 59 117-180 59-118 (124)
170 PRK06101 short chain dehydroge 92.4 0.16 3.5E-06 41.5 3.7 58 74-135 17-81 (240)
171 COG1088 RfbB dTDP-D-glucose 4, 92.4 0.3 6.5E-06 44.8 5.7 85 74-158 16-125 (340)
172 PRK05557 fabG 3-ketoacyl-(acyl 92.4 0.28 6.1E-06 39.2 5.0 59 74-136 21-94 (248)
173 PLN02778 3,5-epimerase/4-reduc 92.3 0.3 6.4E-06 42.3 5.5 74 47-157 14-108 (298)
174 PRK07806 short chain dehydroge 92.3 0.26 5.7E-06 40.0 4.9 33 104-136 56-95 (248)
175 PRK05855 short chain dehydroge 92.3 0.11 2.4E-06 47.1 2.9 79 51-136 311-403 (582)
176 PRK06198 short chain dehydroge 92.3 0.21 4.5E-06 40.9 4.3 77 53-136 4-95 (260)
177 PRK07109 short chain dehydroge 92.3 0.14 3.1E-06 44.9 3.5 59 74-136 24-96 (334)
178 TIGR01832 kduD 2-deoxy-D-gluco 92.3 0.19 4.1E-06 40.8 3.9 77 53-136 3-91 (248)
179 PRK12823 benD 1,6-dihydroxycyc 92.2 0.24 5.3E-06 40.6 4.6 75 53-134 6-93 (260)
180 PRK09134 short chain dehydroge 92.2 0.19 4.1E-06 41.4 3.9 33 104-136 59-98 (258)
181 PRK14874 aspartate-semialdehyd 92.2 0.4 8.7E-06 42.8 6.2 91 46-161 5-97 (334)
182 PRK07576 short chain dehydroge 92.1 0.11 2.4E-06 43.3 2.5 74 53-135 7-96 (264)
183 PRK08017 oxidoreductase; Provi 92.1 1.2 2.6E-05 36.2 8.5 58 74-135 18-84 (256)
184 PRK12748 3-ketoacyl-(acyl-carr 92.1 0.2 4.3E-06 41.2 3.9 32 105-136 68-106 (256)
185 PRK06914 short chain dehydroge 92.0 0.14 3.1E-06 42.5 3.1 59 74-137 19-93 (280)
186 PRK06603 enoyl-(acyl carrier p 92.0 0.23 4.9E-06 41.6 4.3 76 53-135 6-96 (260)
187 PRK08159 enoyl-(acyl carrier p 92.0 0.26 5.7E-06 41.7 4.7 81 49-136 4-99 (272)
188 TIGR01830 3oxo_ACP_reduc 3-oxo 92.0 0.21 4.6E-06 39.8 3.9 59 74-136 14-87 (239)
189 TIGR03206 benzo_BadH 2-hydroxy 91.9 0.26 5.7E-06 39.8 4.4 58 74-135 19-90 (250)
190 PRK06483 dihydromonapterin red 91.9 0.19 4E-06 40.8 3.5 59 74-136 18-85 (236)
191 PRK07677 short chain dehydroge 91.8 0.16 3.4E-06 41.7 3.0 59 74-136 17-89 (252)
192 TIGR01500 sepiapter_red sepiap 91.8 0.19 4.1E-06 41.5 3.5 61 74-136 16-98 (256)
193 PRK07102 short chain dehydroge 91.8 0.16 3.4E-06 41.4 3.0 59 74-136 17-87 (243)
194 PRK07201 short chain dehydroge 91.8 0.19 4.2E-06 47.1 4.0 75 52-135 368-458 (657)
195 PRK07074 short chain dehydroge 91.8 0.15 3.3E-06 41.7 2.9 59 74-136 18-88 (257)
196 PRK07097 gluconate 5-dehydroge 91.7 0.19 4E-06 41.7 3.4 59 74-136 26-98 (265)
197 PRK08340 glucose-1-dehydrogena 91.7 0.14 3.1E-06 42.3 2.7 59 74-136 16-87 (259)
198 PRK12829 short chain dehydroge 91.7 0.2 4.2E-06 40.9 3.4 59 74-136 27-97 (264)
199 PRK12935 acetoacetyl-CoA reduc 91.6 0.17 3.6E-06 41.1 3.0 34 104-137 56-96 (247)
200 PRK12939 short chain dehydroge 91.5 0.24 5.3E-06 39.9 3.8 33 104-136 56-95 (250)
201 PRK06500 short chain dehydroge 91.5 0.22 4.8E-06 40.2 3.5 58 74-135 22-90 (249)
202 PRK07041 short chain dehydroge 91.4 0.26 5.7E-06 39.5 3.9 58 74-135 13-79 (230)
203 PRK12384 sorbitol-6-phosphate 91.4 0.15 3.3E-06 41.8 2.5 58 74-135 18-91 (259)
204 PRK06701 short chain dehydroge 91.4 0.23 5E-06 42.5 3.7 80 50-136 41-135 (290)
205 PF00106 adh_short: short chai 91.3 0.28 6.1E-06 37.3 3.8 60 74-137 16-92 (167)
206 PRK08219 short chain dehydroge 91.3 0.2 4.3E-06 39.8 3.0 59 74-137 19-83 (227)
207 PRK07023 short chain dehydroge 91.3 0.35 7.7E-06 39.3 4.6 59 74-136 17-88 (243)
208 PRK11150 rfaD ADP-L-glycero-D- 91.3 0.3 6.6E-06 41.3 4.3 50 109-158 43-115 (308)
209 PRK12746 short chain dehydroge 91.3 0.29 6.2E-06 39.9 4.0 32 105-136 57-101 (254)
210 PRK06113 7-alpha-hydroxysteroi 91.3 0.24 5.1E-06 40.7 3.5 59 74-136 27-99 (255)
211 PLN02572 UDP-sulfoquinovose sy 91.3 0.79 1.7E-05 42.3 7.3 48 105-152 114-182 (442)
212 PRK12745 3-ketoacyl-(acyl-carr 91.3 0.41 9E-06 38.9 4.9 58 74-135 18-90 (256)
213 PRK07831 short chain dehydroge 91.3 0.24 5.1E-06 40.9 3.5 79 51-135 13-107 (262)
214 PRK12937 short chain dehydroge 91.3 0.21 4.7E-06 40.2 3.2 33 104-136 55-94 (245)
215 TIGR02415 23BDH acetoin reduct 91.2 0.26 5.7E-06 40.0 3.8 59 74-136 16-88 (254)
216 PRK12825 fabG 3-ketoacyl-(acyl 91.2 0.18 3.8E-06 40.2 2.6 31 104-134 56-93 (249)
217 PRK09072 short chain dehydroge 91.1 0.23 5.1E-06 40.9 3.4 59 74-136 21-91 (263)
218 PRK06123 short chain dehydroge 91.1 0.28 6E-06 39.8 3.7 32 105-136 53-91 (248)
219 PRK13303 L-aspartate dehydroge 91.0 0.64 1.4E-05 40.2 6.1 59 123-183 59-117 (265)
220 PRK06732 phosphopantothenate-- 91.0 0.36 7.9E-06 41.0 4.5 70 48-137 22-93 (229)
221 PRK10084 dTDP-glucose 4,6 dehy 91.0 0.35 7.6E-06 41.7 4.5 46 105-150 51-114 (352)
222 PRK06484 short chain dehydroge 91.0 0.64 1.4E-05 42.5 6.4 79 51-136 265-354 (520)
223 PRK07774 short chain dehydroge 91.0 0.38 8.3E-06 39.0 4.4 58 74-135 22-93 (250)
224 PF08659 KR: KR domain; Inter 91.0 0.35 7.6E-06 38.8 4.2 61 74-137 16-93 (181)
225 TIGR03855 NAD_NadX aspartate d 90.9 0.59 1.3E-05 40.2 5.7 59 119-183 30-93 (229)
226 PRK07069 short chain dehydroge 90.9 0.16 3.5E-06 41.1 2.2 60 74-137 15-91 (251)
227 PRK05786 fabG 3-ketoacyl-(acyl 90.7 0.29 6.2E-06 39.4 3.4 60 74-137 21-93 (238)
228 PRK07832 short chain dehydroge 90.5 0.41 8.9E-06 39.9 4.3 59 74-136 16-89 (272)
229 PRK12548 shikimate 5-dehydroge 90.5 0.36 7.8E-06 42.2 4.1 75 53-134 124-208 (289)
230 PRK12744 short chain dehydroge 90.5 0.62 1.3E-05 38.3 5.3 31 105-135 62-99 (257)
231 PRK06550 fabG 3-ketoacyl-(acyl 90.4 0.48 1E-05 38.1 4.6 56 74-135 21-77 (235)
232 TIGR01777 yfcH conserved hypot 90.4 0.8 1.7E-05 37.8 6.0 82 47-152 3-102 (292)
233 PRK09242 tropinone reductase; 90.4 0.22 4.7E-06 40.9 2.5 76 53-135 7-98 (257)
234 PRK07578 short chain dehydroge 90.4 0.42 9.2E-06 37.8 4.1 29 108-136 35-66 (199)
235 PRK08057 cobalt-precorrin-6x r 90.3 1.2 2.7E-05 38.6 7.3 80 74-158 17-99 (248)
236 PRK06484 short chain dehydroge 90.3 0.28 6.1E-06 44.8 3.4 75 54-135 4-89 (520)
237 PRK05671 aspartate-semialdehyd 90.2 0.61 1.3E-05 42.1 5.5 92 46-162 8-101 (336)
238 PRK08993 2-deoxy-D-gluconate 3 90.2 0.33 7.1E-06 40.1 3.4 32 105-136 58-96 (253)
239 PRK05599 hypothetical protein; 90.1 0.36 7.7E-06 39.9 3.6 51 87-137 24-89 (246)
240 PRK07775 short chain dehydroge 90.1 0.24 5.2E-06 41.5 2.6 59 74-136 26-98 (274)
241 PRK08642 fabG 3-ketoacyl-(acyl 90.1 0.31 6.6E-06 39.5 3.1 32 104-135 52-91 (253)
242 PRK08085 gluconate 5-dehydroge 90.1 0.33 7.2E-06 39.7 3.4 58 74-135 25-96 (254)
243 PRK08217 fabG 3-ketoacyl-(acyl 90.1 0.3 6.5E-06 39.4 3.0 58 74-135 21-92 (253)
244 TIGR01296 asd_B aspartate-semi 90.0 0.62 1.3E-05 41.9 5.3 90 47-161 4-95 (339)
245 PRK08213 gluconate 5-dehydroge 90.0 0.27 5.9E-06 40.4 2.8 58 74-135 28-99 (259)
246 PRK06997 enoyl-(acyl carrier p 90.0 0.55 1.2E-05 39.3 4.7 79 53-136 4-95 (260)
247 PLN02996 fatty acyl-CoA reduct 90.0 0.88 1.9E-05 42.7 6.5 47 104-150 84-150 (491)
248 TIGR02622 CDP_4_6_dhtase CDP-g 90.0 0.41 9E-06 41.6 4.1 85 47-151 9-117 (349)
249 PLN02206 UDP-glucuronate decar 89.9 0.56 1.2E-05 43.4 5.1 50 104-158 167-232 (442)
250 PRK07060 short chain dehydroge 89.7 0.41 8.8E-06 38.6 3.6 77 53-136 7-88 (245)
251 PRK07792 fabG 3-ketoacyl-(acyl 89.5 0.33 7.2E-06 41.8 3.1 79 51-136 8-100 (306)
252 PRK12742 oxidoreductase; Provi 89.5 0.47 1E-05 38.1 3.8 78 52-136 3-86 (237)
253 PRK07904 short chain dehydroge 89.4 0.77 1.7E-05 38.3 5.2 50 87-136 34-98 (253)
254 PRK07791 short chain dehydroge 89.4 0.46 9.9E-06 40.4 3.8 33 105-137 65-104 (286)
255 PRK12936 3-ketoacyl-(acyl-carr 89.4 0.39 8.4E-06 38.6 3.2 59 74-136 22-91 (245)
256 smart00822 PKS_KR This enzymat 89.2 0.23 4.9E-06 36.9 1.6 32 105-136 54-92 (180)
257 KOG1430|consensus 89.0 1.1 2.5E-05 41.3 6.3 89 47-153 9-119 (361)
258 TIGR01829 AcAcCoA_reduct aceto 88.8 0.64 1.4E-05 37.3 4.1 33 104-136 50-89 (242)
259 PLN02166 dTDP-glucose 4,6-dehy 88.7 0.82 1.8E-05 42.3 5.2 49 105-158 169-233 (436)
260 PRK06940 short chain dehydroge 88.6 0.58 1.3E-05 39.5 3.9 61 74-136 13-87 (275)
261 PF01408 GFO_IDH_MocA: Oxidore 88.6 1.5 3.3E-05 32.0 5.7 93 76-183 17-117 (120)
262 PRK12827 short chain dehydroge 88.6 0.56 1.2E-05 37.7 3.6 34 104-137 59-99 (249)
263 PRK12743 oxidoreductase; Provi 88.5 0.53 1.2E-05 38.8 3.5 59 74-136 18-91 (256)
264 PRK06349 homoserine dehydrogen 88.1 1.6 3.5E-05 40.3 6.8 61 119-182 64-126 (426)
265 PRK12938 acetyacetyl-CoA reduc 88.0 0.64 1.4E-05 37.7 3.7 32 105-136 54-92 (246)
266 PF13561 adh_short_C2: Enoyl-( 87.9 0.46 9.9E-06 38.9 2.8 61 74-138 12-86 (241)
267 PLN00015 protochlorophyllide r 87.9 0.67 1.5E-05 39.9 3.9 60 74-136 13-86 (308)
268 PRK13301 putative L-aspartate 87.8 2.3 5E-05 37.9 7.3 59 118-182 54-117 (267)
269 PRK06077 fabG 3-ketoacyl-(acyl 87.7 1.1 2.3E-05 36.3 4.8 31 105-135 57-94 (252)
270 TIGR01963 PHB_DH 3-hydroxybuty 87.6 0.91 2E-05 36.7 4.3 59 74-136 17-89 (255)
271 PRK06924 short chain dehydroge 87.5 0.57 1.2E-05 38.1 3.1 58 74-135 17-90 (251)
272 PRK08703 short chain dehydroge 87.5 1.7 3.6E-05 35.2 5.8 58 74-135 22-97 (239)
273 PRK12824 acetoacetyl-CoA reduc 87.4 0.76 1.6E-05 36.9 3.7 58 74-135 18-90 (245)
274 TIGR01921 DAP-DH diaminopimela 87.4 1.3 2.7E-05 40.4 5.5 61 119-183 54-117 (324)
275 PRK06953 short chain dehydroge 87.4 0.76 1.6E-05 37.0 3.7 59 74-136 17-81 (222)
276 PLN02383 aspartate semialdehyd 87.3 2.2 4.7E-05 38.7 7.0 90 47-162 12-104 (344)
277 PRK07035 short chain dehydroge 87.2 0.54 1.2E-05 38.4 2.8 58 74-135 24-95 (252)
278 COG2099 CobK Precorrin-6x redu 87.0 2 4.3E-05 38.2 6.4 65 90-157 32-99 (257)
279 TIGR03450 mycothiol_INO1 inosi 86.6 1.6 3.5E-05 40.3 5.8 64 116-183 112-179 (351)
280 PRK06128 oxidoreductase; Provi 86.6 1.1 2.4E-05 38.2 4.5 77 52-135 52-144 (300)
281 KOG1200|consensus 86.6 0.7 1.5E-05 40.6 3.2 60 74-137 30-102 (256)
282 TIGR01289 LPOR light-dependent 86.5 0.53 1.1E-05 40.8 2.5 60 74-136 19-92 (314)
283 PRK06720 hypothetical protein; 86.5 1.1 2.3E-05 36.3 4.1 78 53-137 14-105 (169)
284 PRK08303 short chain dehydroge 86.4 0.83 1.8E-05 39.7 3.6 75 53-134 6-105 (305)
285 COG0673 MviM Predicted dehydro 86.3 2.2 4.8E-05 36.6 6.2 61 117-183 57-122 (342)
286 PRK08324 short chain dehydroge 86.0 0.48 1E-05 45.9 2.2 80 50-136 417-509 (681)
287 PRK08040 putative semialdehyde 86.0 1.3 2.9E-05 40.2 4.8 95 42-161 3-100 (336)
288 PLN02503 fatty acyl-CoA reduct 85.9 2.7 5.9E-05 41.1 7.2 102 44-151 108-258 (605)
289 PRK09730 putative NAD(P)-bindi 85.9 0.43 9.3E-06 38.4 1.5 32 105-136 52-90 (247)
290 PRK11579 putative oxidoreducta 85.5 2.1 4.5E-05 37.8 5.8 60 118-183 55-119 (346)
291 PF07994 NAD_binding_5: Myo-in 85.4 1.4 3E-05 39.6 4.6 39 142-183 191-229 (295)
292 KOG0725|consensus 85.4 0.73 1.6E-05 40.1 2.8 82 51-139 4-103 (270)
293 KOG1208|consensus 85.4 1.1 2.4E-05 40.2 4.1 88 45-139 25-128 (314)
294 TIGR02685 pter_reduc_Leis pter 85.3 1 2.3E-05 37.3 3.6 32 105-136 53-95 (267)
295 TIGR01831 fabG_rel 3-oxoacyl-( 85.2 0.75 1.6E-05 37.1 2.6 58 74-135 14-86 (239)
296 PRK07985 oxidoreductase; Provi 85.2 1.3 2.8E-05 37.9 4.2 77 52-135 46-138 (294)
297 PRK06270 homoserine dehydrogen 85.2 3.7 8.1E-05 36.8 7.3 62 119-182 81-147 (341)
298 TIGR01851 argC_other N-acetyl- 84.5 1.6 3.4E-05 39.6 4.6 78 47-161 6-83 (310)
299 KOG1611|consensus 84.3 3.8 8.3E-05 36.3 6.8 96 74-178 19-137 (249)
300 PF00899 ThiF: ThiF family; I 83.9 2 4.3E-05 32.8 4.4 43 115-158 82-124 (135)
301 PRK08261 fabG 3-ketoacyl-(acyl 83.7 2.3 4.9E-05 38.5 5.3 80 50-136 205-295 (450)
302 TIGR02853 spore_dpaA dipicolin 83.5 0.57 1.2E-05 41.2 1.4 111 52-182 148-258 (287)
303 cd01483 E1_enzyme_family Super 83.2 2.7 5.9E-05 32.2 4.9 42 118-160 82-123 (143)
304 PRK12747 short chain dehydroge 83.1 1.5 3.2E-05 35.8 3.6 31 105-135 55-98 (252)
305 PRK10206 putative oxidoreducta 82.9 3.8 8.1E-05 36.5 6.3 60 118-183 55-119 (344)
306 PRK14188 bifunctional 5,10-met 82.7 1.3 2.7E-05 39.8 3.2 80 72-159 142-231 (296)
307 PRK00258 aroE shikimate 5-dehy 82.4 0.44 9.5E-06 41.2 0.2 115 52-183 120-241 (278)
308 PF02719 Polysacc_synt_2: Poly 81.1 1 2.3E-05 40.4 2.1 82 74-159 14-128 (293)
309 PF07993 NAD_binding_4: Male s 80.7 1.8 3.9E-05 36.2 3.3 85 48-150 2-125 (249)
310 PF01488 Shikimate_DH: Shikima 80.4 0.11 2.4E-06 40.3 -3.8 94 52-158 9-109 (135)
311 TIGR00978 asd_EA aspartate-sem 80.1 5.8 0.00013 35.4 6.5 36 123-160 71-106 (341)
312 PRK12549 shikimate 5-dehydroge 80.1 0.43 9.4E-06 41.8 -0.7 55 74-134 142-203 (284)
313 PRK14166 bifunctional 5,10-met 79.9 0.8 1.7E-05 40.9 0.9 92 70-164 139-245 (282)
314 PRK04207 glyceraldehyde-3-phos 79.8 2.7 5.8E-05 37.9 4.3 40 119-160 72-111 (341)
315 cd00757 ThiF_MoeB_HesA_family 79.2 3.6 7.8E-05 34.5 4.6 42 115-157 101-142 (228)
316 PF02571 CbiJ: Precorrin-6x re 79.0 4.2 9.1E-05 35.4 5.1 52 106-157 45-99 (249)
317 KOG1014|consensus 78.3 2.8 6E-05 38.3 3.9 82 42-143 49-144 (312)
318 PRK08664 aspartate-semialdehyd 77.6 7.8 0.00017 34.8 6.6 89 47-160 8-109 (349)
319 PRK14190 bifunctional 5,10-met 77.1 1.4 3E-05 39.4 1.6 90 71-163 141-245 (284)
320 PRK08374 homoserine dehydrogen 77.1 7.9 0.00017 34.8 6.4 60 119-183 83-145 (336)
321 PRK06728 aspartate-semialdehyd 76.6 8.6 0.00019 35.3 6.6 94 46-162 9-103 (347)
322 TIGR01809 Shik-DH-AROM shikima 76.3 3.1 6.7E-05 36.3 3.5 56 74-134 140-199 (282)
323 cd05212 NAD_bind_m-THF_DH_Cycl 76.1 2.8 6.1E-05 33.5 3.0 70 87-161 29-103 (140)
324 TIGR02114 coaB_strep phosphopa 75.6 3.5 7.5E-05 35.0 3.6 54 74-136 31-91 (227)
325 PLN02260 probable rhamnose bio 75.4 4.8 0.0001 38.6 4.9 49 109-157 410-479 (668)
326 TIGR00507 aroE shikimate 5-deh 75.0 1.4 3E-05 37.8 1.0 56 123-183 176-234 (270)
327 PRK14186 bifunctional 5,10-met 74.7 1.5 3.3E-05 39.4 1.2 91 70-163 140-249 (297)
328 COG0373 HemA Glutamyl-tRNA red 74.2 3.4 7.3E-05 38.9 3.4 96 53-158 176-274 (414)
329 TIGR02356 adenyl_thiF thiazole 74.1 6.4 0.00014 32.6 4.7 43 115-158 101-143 (202)
330 COG1712 Predicted dinucleotide 73.9 5.1 0.00011 35.6 4.2 60 117-182 52-115 (255)
331 COG1087 GalE UDP-glucose 4-epi 73.7 8.9 0.00019 35.3 5.9 50 106-155 46-113 (329)
332 PRK14184 bifunctional 5,10-met 73.0 2.2 4.7E-05 38.2 1.8 93 71-164 140-248 (286)
333 PF03446 NAD_binding_2: NAD bi 72.8 9 0.0002 30.2 5.1 15 119-133 51-65 (163)
334 PRK12749 quinate/shikimate deh 72.5 8.8 0.00019 33.8 5.5 58 74-134 139-205 (288)
335 PRK08223 hypothetical protein; 72.2 8.1 0.00018 34.6 5.2 41 116-156 108-149 (287)
336 PRK06598 aspartate-semialdehyd 72.2 12 0.00026 34.6 6.5 50 106-161 50-101 (369)
337 PLN02897 tetrahydrofolate dehy 70.8 2.2 4.8E-05 39.3 1.4 91 71-164 197-308 (345)
338 PRK11863 N-acetyl-gamma-glutam 70.5 6.6 0.00014 35.5 4.3 79 47-162 7-85 (313)
339 PRK14171 bifunctional 5,10-met 70.4 2.1 4.5E-05 38.5 1.0 91 71-164 142-247 (288)
340 PRK08945 putative oxoacyl-(acy 70.1 11 0.00024 30.6 5.2 77 52-135 9-102 (247)
341 PRK09310 aroDE bifunctional 3- 70.0 4.2 9E-05 38.3 3.0 12 123-134 388-399 (477)
342 TIGR02355 moeB molybdopterin s 69.9 8.2 0.00018 33.1 4.6 42 115-157 104-145 (240)
343 PRK08328 hypothetical protein; 69.5 9.1 0.0002 32.4 4.8 42 115-157 108-149 (231)
344 PLN02730 enoyl-[acyl-carrier-p 69.4 11 0.00023 33.4 5.3 35 52-91 6-40 (303)
345 PLN02616 tetrahydrofolate dehy 69.3 2.3 5E-05 39.5 1.1 90 72-164 215-325 (364)
346 PRK14185 bifunctional 5,10-met 69.3 2.6 5.7E-05 37.9 1.5 91 71-164 140-255 (293)
347 cd05311 NAD_bind_2_malic_enz N 69.1 5.2 0.00011 34.0 3.2 113 52-181 22-145 (226)
348 PRK14172 bifunctional 5,10-met 69.0 1.9 4.1E-05 38.5 0.5 90 71-163 141-244 (278)
349 smart00859 Semialdhyde_dh Semi 68.9 5.8 0.00013 29.6 3.1 39 124-162 64-103 (122)
350 TIGR02813 omega_3_PfaA polyket 68.9 5.3 0.00011 45.3 3.9 33 105-137 2095-2133(2582)
351 PRK14178 bifunctional 5,10-met 68.9 7.9 0.00017 34.6 4.4 82 71-158 135-224 (279)
352 COG0002 ArgC Acetylglutamate s 68.9 13 0.00029 34.4 6.0 94 47-163 7-106 (349)
353 TIGR01761 thiaz-red thiazoliny 68.2 10 0.00022 34.5 5.0 62 118-183 55-119 (343)
354 PLN02516 methylenetetrahydrofo 68.0 2.6 5.6E-05 38.0 1.2 89 72-163 151-260 (299)
355 PRK10792 bifunctional 5,10-met 68.0 2.8 6E-05 37.5 1.4 93 71-164 142-247 (285)
356 PRK05848 nicotinate-nucleotide 67.8 17 0.00037 32.2 6.2 53 104-159 201-258 (273)
357 PRK14187 bifunctional 5,10-met 67.8 2.7 5.9E-05 37.8 1.2 91 71-164 143-251 (294)
358 PRK14183 bifunctional 5,10-met 67.3 2.1 4.5E-05 38.3 0.4 91 71-164 140-245 (281)
359 KOG1199|consensus 67.0 5.9 0.00013 34.5 3.1 60 74-137 25-95 (260)
360 PRK14169 bifunctional 5,10-met 67.0 2.5 5.3E-05 37.8 0.8 90 71-163 139-243 (282)
361 PRK14181 bifunctional 5,10-met 66.8 2.4 5.2E-05 38.0 0.7 90 72-164 137-250 (287)
362 PRK12859 3-ketoacyl-(acyl-carr 66.7 5 0.00011 33.2 2.5 32 105-136 69-107 (256)
363 PRK14191 bifunctional 5,10-met 66.4 3.7 8E-05 36.8 1.8 90 71-163 140-244 (285)
364 PRK14177 bifunctional 5,10-met 65.9 3.3 7.1E-05 37.1 1.4 90 71-164 142-243 (284)
365 PLN02780 ketoreductase/ oxidor 65.4 7.3 0.00016 34.1 3.5 59 74-136 69-143 (320)
366 PRK14851 hypothetical protein; 64.9 11 0.00023 37.6 4.8 51 107-158 116-167 (679)
367 CHL00139 rpl18 ribosomal prote 64.8 13 0.00028 28.9 4.3 42 138-181 65-108 (109)
368 PRK08762 molybdopterin biosynt 64.8 11 0.00024 34.0 4.6 42 115-157 215-256 (376)
369 PRK08618 ornithine cyclodeamin 64.5 1 2.2E-05 39.9 -2.0 39 119-161 186-224 (325)
370 TIGR01692 HIBADH 3-hydroxyisob 64.0 13 0.00029 31.9 4.8 58 119-181 46-110 (288)
371 PRK14168 bifunctional 5,10-met 63.9 3.8 8.3E-05 36.9 1.4 91 71-164 144-259 (297)
372 KOG1205|consensus 63.5 7.4 0.00016 34.8 3.1 33 105-137 64-103 (282)
373 cd01485 E1-1_like Ubiquitin ac 63.4 24 0.00051 29.2 6.0 41 116-157 104-144 (198)
374 COG0269 SgbH 3-hexulose-6-phos 63.1 37 0.00081 29.6 7.3 62 109-172 64-127 (217)
375 PRK14180 bifunctional 5,10-met 63.0 3.7 8.1E-05 36.7 1.2 91 71-164 141-245 (282)
376 PF00809 Pterin_bind: Pterin b 62.9 38 0.00082 28.3 7.2 72 107-180 73-161 (210)
377 PRK05579 bifunctional phosphop 62.8 16 0.00034 33.9 5.3 78 51-136 184-278 (399)
378 PRK12475 thiamine/molybdopteri 62.4 13 0.00028 33.5 4.6 48 108-157 100-147 (338)
379 PRK06392 homoserine dehydrogen 62.3 32 0.00069 31.1 7.0 56 124-182 80-138 (326)
380 PRK05690 molybdopterin biosynt 62.1 13 0.00029 31.8 4.4 42 115-157 112-153 (245)
381 PRK14167 bifunctional 5,10-met 61.9 3.1 6.8E-05 37.4 0.5 90 71-163 140-253 (297)
382 COG0460 ThrA Homoserine dehydr 61.9 29 0.00062 31.9 6.7 59 122-182 75-135 (333)
383 PRK14182 bifunctional 5,10-met 61.9 3.6 7.9E-05 36.8 0.9 91 71-164 140-245 (282)
384 PRK07340 ornithine cyclodeamin 61.4 0.75 1.6E-05 40.6 -3.5 45 118-166 181-225 (304)
385 cd01079 NAD_bind_m-THF_DH NAD 61.4 14 0.00029 31.7 4.3 41 118-161 119-159 (197)
386 KOG1371|consensus 61.4 18 0.00039 33.5 5.3 53 103-155 53-123 (343)
387 PRK07428 nicotinate-nucleotide 60.8 33 0.00071 30.7 6.8 70 87-159 197-272 (288)
388 PRK14027 quinate/shikimate deh 60.7 6.6 0.00014 34.6 2.3 57 74-133 142-202 (283)
389 PRK07877 hypothetical protein; 60.6 24 0.00052 35.5 6.4 101 50-159 102-229 (722)
390 PRK14173 bifunctional 5,10-met 60.1 3.9 8.6E-05 36.6 0.8 89 71-162 138-245 (287)
391 PLN02522 ATP citrate (pro-S)-l 60.0 20 0.00044 35.4 5.7 63 118-183 68-134 (608)
392 PF01729 QRPTase_C: Quinolinat 59.5 21 0.00045 29.4 4.9 70 87-159 81-156 (169)
393 PRK14170 bifunctional 5,10-met 59.4 4.5 9.8E-05 36.2 1.1 90 72-164 141-245 (284)
394 PRK11613 folP dihydropteroate 59.4 33 0.00072 30.6 6.5 55 117-183 80-137 (282)
395 PLN02358 glyceraldehyde-3-phos 59.1 11 0.00024 34.3 3.6 51 107-159 77-127 (338)
396 PRK15116 sulfur acceptor prote 58.9 17 0.00036 32.1 4.5 44 115-159 110-154 (268)
397 TIGR01692 HIBADH 3-hydroxyisob 58.8 70 0.0015 27.5 8.3 52 105-156 52-113 (288)
398 PF03446 NAD_binding_2: NAD bi 58.7 27 0.00058 27.5 5.3 54 104-157 56-118 (163)
399 PRK14179 bifunctional 5,10-met 58.6 11 0.00023 33.8 3.3 80 71-157 141-229 (284)
400 PRK05597 molybdopterin biosynt 58.5 16 0.00036 33.0 4.5 41 115-156 108-148 (355)
401 cd05213 NAD_bind_Glutamyl_tRNA 58.2 9.7 0.00021 33.5 3.0 95 53-159 176-274 (311)
402 PRK08300 acetaldehyde dehydrog 58.1 13 0.00029 33.5 3.8 35 124-160 69-103 (302)
403 TIGR01019 sucCoAalpha succinyl 58.0 34 0.00074 30.5 6.4 61 118-183 54-118 (286)
404 PRK08306 dipicolinate synthase 57.6 6.7 0.00015 34.5 1.8 59 117-183 202-260 (296)
405 PTZ00325 malate dehydrogenase; 57.5 20 0.00043 32.3 4.8 77 88-164 36-131 (321)
406 cd01422 MGS Methylglyoxal synt 57.2 24 0.00053 26.9 4.7 40 117-156 60-106 (115)
407 KOG1201|consensus 57.1 8.8 0.00019 34.9 2.5 93 53-152 36-146 (300)
408 PRK09620 hypothetical protein; 57.0 18 0.0004 30.9 4.4 70 48-136 25-98 (229)
409 PLN00125 Succinyl-CoA ligase [ 56.9 17 0.00038 32.6 4.4 89 80-183 33-125 (300)
410 PRK05678 succinyl-CoA syntheta 56.6 22 0.00048 31.7 4.9 61 118-183 56-120 (291)
411 PRK05742 nicotinate-nucleotide 56.4 28 0.00062 30.9 5.6 74 81-159 186-262 (277)
412 KOG3923|consensus 56.0 10 0.00022 35.0 2.7 33 104-138 164-196 (342)
413 PRK00045 hemA glutamyl-tRNA re 55.8 11 0.00025 34.6 3.1 97 53-159 180-281 (423)
414 PF02882 THF_DHG_CYH_C: Tetrah 55.5 9.5 0.00021 31.2 2.3 76 87-163 37-124 (160)
415 PRK14106 murD UDP-N-acetylmura 55.4 24 0.00053 31.9 5.1 89 53-156 3-97 (450)
416 PRK13940 glutamyl-tRNA reducta 55.1 5.7 0.00012 37.0 1.0 74 53-135 179-252 (414)
417 PRK06559 nicotinate-nucleotide 54.4 49 0.0011 29.8 6.8 70 87-159 198-270 (290)
418 PRK07878 molybdopterin biosynt 54.3 21 0.00047 32.6 4.6 41 115-156 122-162 (392)
419 cd01487 E1_ThiF_like E1_ThiF_l 53.7 22 0.00048 28.8 4.2 41 117-158 80-121 (174)
420 TIGR03215 ac_ald_DH_ac acetald 53.2 19 0.00042 32.0 4.0 35 124-160 63-97 (285)
421 PRK14194 bifunctional 5,10-met 52.9 18 0.00039 32.7 3.8 81 71-158 142-231 (301)
422 PRK08644 thiamine biosynthesis 52.9 24 0.00052 29.6 4.4 43 116-159 108-151 (212)
423 TIGR01532 E4PD_g-proteo D-eryt 52.7 21 0.00045 32.3 4.2 44 114-159 78-121 (325)
424 PRK07411 hypothetical protein; 52.7 23 0.00051 32.5 4.6 40 116-156 119-158 (390)
425 cd01075 NAD_bind_Leu_Phe_Val_D 52.5 20 0.00043 29.7 3.8 38 50-95 23-60 (200)
426 cd01489 Uba2_SUMO Ubiquitin ac 52.3 22 0.00047 32.1 4.2 38 119-157 84-121 (312)
427 PF03807 F420_oxidored: NADP o 52.2 21 0.00047 25.0 3.4 38 119-158 55-94 (96)
428 PF13740 ACT_6: ACT domain; PD 52.0 37 0.0008 23.6 4.6 55 127-182 2-73 (76)
429 COG0190 FolD 5,10-methylene-te 51.8 5.7 0.00012 35.8 0.5 95 70-165 138-245 (283)
430 KOG4039|consensus 51.8 67 0.0015 28.1 6.9 78 74-153 34-124 (238)
431 PRK07688 thiamine/molybdopteri 51.7 24 0.00051 31.9 4.4 47 108-156 100-146 (339)
432 PRK00124 hypothetical protein; 51.3 1.2E+02 0.0026 24.9 8.0 83 91-180 30-120 (151)
433 COG0623 FabI Enoyl-[acyl-carri 51.2 19 0.00041 32.2 3.6 93 53-160 4-110 (259)
434 PLN03096 glyceraldehyde-3-phos 51.1 17 0.00037 34.1 3.5 51 107-159 132-182 (395)
435 TIGR00060 L18_bact ribosomal p 51.0 30 0.00065 27.1 4.3 42 138-181 70-113 (114)
436 PRK07535 methyltetrahydrofolat 50.9 1.2E+02 0.0025 26.5 8.4 72 108-180 71-152 (261)
437 cd01484 E1-2_like Ubiquitin ac 50.8 23 0.0005 30.5 4.0 38 120-158 86-123 (234)
438 PRK06153 hypothetical protein; 50.1 29 0.00064 32.6 4.8 50 106-158 249-298 (393)
439 TIGR03443 alpha_am_amid L-amin 50.0 37 0.00081 35.1 6.0 49 104-152 1034-1101(1389)
440 PTZ00023 glyceraldehyde-3-phos 49.8 21 0.00046 32.7 3.8 45 113-159 78-122 (337)
441 PRK05600 thiamine biosynthesis 49.7 28 0.00062 31.8 4.6 41 115-156 121-161 (370)
442 PLN02438 inositol-3-phosphate 49.6 25 0.00053 34.3 4.3 37 143-183 267-303 (510)
443 PRK14852 hypothetical protein; 49.6 42 0.00092 35.1 6.3 43 115-157 412-455 (989)
444 cd00532 MGS-like MGS-like doma 49.5 35 0.00077 25.5 4.4 41 115-155 56-103 (112)
445 TIGR00872 gnd_rel 6-phosphoglu 49.1 28 0.00061 30.3 4.3 34 123-156 83-116 (298)
446 COG2185 Sbm Methylmalonyl-CoA 49.0 44 0.00094 27.3 5.1 43 138-180 50-92 (143)
447 TIGR02886 spore_II_AA anti-sig 48.9 62 0.0013 23.2 5.5 27 151-182 48-74 (106)
448 PRK14192 bifunctional 5,10-met 48.8 19 0.00041 31.9 3.3 47 87-134 160-211 (283)
449 PLN02257 phosphoribosylamine-- 48.8 51 0.0011 30.7 6.2 48 111-158 46-93 (434)
450 COG2716 GcvR Glycine cleavage 48.6 24 0.00052 29.9 3.6 56 126-182 4-76 (176)
451 TIGR00521 coaBC_dfp phosphopan 48.5 44 0.00096 31.0 5.7 61 107-167 242-309 (390)
452 COG1028 FabG Dehydrogenases wi 47.7 37 0.00079 27.4 4.6 33 105-137 58-98 (251)
453 PRK07896 nicotinate-nucleotide 47.4 68 0.0015 28.8 6.6 53 104-159 218-275 (289)
454 PRK07403 glyceraldehyde-3-phos 46.9 23 0.0005 32.5 3.6 50 108-159 73-122 (337)
455 cd00423 Pterin_binding Pterin 46.8 1.8E+02 0.0039 24.9 8.9 50 108-158 78-127 (258)
456 PRK06091 membrane protein FdrA 46.7 46 0.001 32.7 5.7 62 118-183 110-171 (555)
457 PRK07729 glyceraldehyde-3-phos 46.7 26 0.00057 32.2 3.9 47 111-159 75-121 (343)
458 PRK08955 glyceraldehyde-3-phos 46.6 22 0.00047 32.4 3.4 35 124-160 87-121 (334)
459 PRK05968 hypothetical protein; 46.4 49 0.0011 29.9 5.6 56 104-159 126-186 (389)
460 PRK05593 rplR 50S ribosomal pr 46.3 40 0.00087 26.4 4.4 43 137-181 72-116 (117)
461 TIGR02992 ectoine_eutC ectoine 46.2 7.8 0.00017 34.4 0.4 129 19-160 84-226 (326)
462 KOG4169|consensus 45.4 19 0.00041 32.2 2.7 36 104-139 55-97 (261)
463 PF02142 MGS: MGS-like domain 45.3 22 0.00048 25.8 2.7 38 118-155 51-94 (95)
464 PRK15425 gapA glyceraldehyde-3 45.2 23 0.00051 32.3 3.3 33 125-159 89-121 (331)
465 TIGR00518 alaDH alanine dehydr 45.1 39 0.00085 30.7 4.8 49 110-159 215-268 (370)
466 cd00423 Pterin_binding Pterin 45.1 53 0.0011 28.2 5.3 22 141-162 27-48 (258)
467 cd01492 Aos1_SUMO Ubiquitin ac 44.8 56 0.0012 27.0 5.3 38 119-157 104-141 (197)
468 PRK06978 nicotinate-nucleotide 44.6 51 0.0011 29.8 5.4 53 104-159 224-278 (294)
469 PRK13789 phosphoribosylamine-- 44.6 38 0.00082 31.4 4.7 46 109-156 50-97 (426)
470 PRK13790 phosphoribosylamine-- 44.5 35 0.00076 30.8 4.4 46 111-158 11-58 (379)
471 TIGR03603 cyclo_dehy_ocin bact 43.9 34 0.00073 30.7 4.1 37 119-155 145-182 (318)
472 COG2084 MmsB 3-hydroxyisobutyr 43.1 84 0.0018 28.2 6.5 58 119-181 51-115 (286)
473 COG1023 Gnd Predicted 6-phosph 43.0 71 0.0015 29.0 5.9 42 117-158 78-119 (300)
474 PRK09016 quinolinate phosphori 42.5 60 0.0013 29.4 5.5 53 104-159 227-281 (296)
475 TIGR01496 DHPS dihydropteroate 42.5 82 0.0018 27.3 6.2 55 129-183 5-99 (257)
476 PF13528 Glyco_trans_1_3: Glyc 42.4 2.1E+02 0.0045 24.1 9.0 91 73-182 206-298 (318)
477 PRK11559 garR tartronate semia 42.3 50 0.0011 28.2 4.8 43 119-162 52-100 (296)
478 PRK13535 erythrose 4-phosphate 41.9 29 0.00062 31.7 3.4 35 124-160 90-124 (336)
479 TIGR02717 AcCoA-syn-alpha acet 41.8 57 0.0012 30.4 5.4 63 119-183 58-125 (447)
480 PRK14175 bifunctional 5,10-met 41.7 29 0.00064 31.0 3.4 83 71-158 141-230 (286)
481 PRK08072 nicotinate-nucleotide 41.4 97 0.0021 27.5 6.6 74 81-159 185-261 (277)
482 PRK08291 ectoine utilization p 41.2 3.5 7.6E-05 36.6 -2.6 74 76-160 149-229 (330)
483 PRK14189 bifunctional 5,10-met 41.1 35 0.00077 30.5 3.8 63 71-136 141-212 (285)
484 TIGR01302 IMP_dehydrog inosine 41.1 1.9E+02 0.0042 27.0 8.8 72 104-183 235-331 (450)
485 TIGR01534 GAPDH-I glyceraldehy 41.1 29 0.00062 31.6 3.2 33 125-159 90-122 (327)
486 PF04481 DUF561: Protein of un 41.0 38 0.00081 30.0 3.8 27 141-167 30-56 (242)
487 PF03447 NAD_binding_3: Homose 40.8 27 0.00059 25.7 2.6 46 109-154 62-114 (117)
488 PRK09599 6-phosphogluconate de 40.7 43 0.00092 29.1 4.1 34 123-156 84-117 (301)
489 CHL00200 trpA tryptophan synth 40.3 48 0.001 29.1 4.4 48 133-183 100-148 (263)
490 PHA02709 hypothetical protein; 40.2 7 0.00015 25.8 -0.6 15 17-31 12-26 (44)
491 cd01424 MGS_CPS_II Methylglyox 40.0 65 0.0014 23.7 4.5 40 116-155 56-99 (110)
492 TIGR01035 hemA glutamyl-tRNA r 39.9 38 0.00082 31.2 3.9 97 53-159 178-278 (417)
493 cd01839 SGNH_arylesterase_like 39.6 38 0.00083 27.0 3.4 101 52-158 48-176 (208)
494 cd00452 KDPG_aldolase KDPG and 39.0 2E+02 0.0044 23.2 7.7 54 104-160 28-85 (190)
495 PF02515 CoA_transf_3: CoA-tra 38.9 46 0.001 27.2 3.9 53 109-161 1-59 (191)
496 PLN02237 glyceraldehyde-3-phos 38.6 38 0.00082 32.4 3.7 50 108-159 148-197 (442)
497 PLN02350 phosphogluconate dehy 38.5 87 0.0019 30.1 6.2 51 106-156 73-130 (493)
498 PRK02412 aroD 3-dehydroquinate 38.4 42 0.00092 28.9 3.7 56 125-183 74-139 (253)
499 PRK05234 mgsA methylglyoxal sy 37.9 60 0.0013 25.9 4.3 40 117-156 65-111 (142)
500 PRK06543 nicotinate-nucleotide 37.9 1.3E+02 0.0029 26.9 6.9 70 87-159 194-266 (281)
No 1
>KOG2733|consensus
Probab=99.95 E-value=6.6e-28 Score=218.13 Aligned_cols=124 Identities=42% Similarity=0.599 Sum_probs=112.2
Q ss_pred ccccc-cccCccccceeeecccccCCCCCCCchhhhhhh--CCCCCceeEEeeeeccccc-----------ccCCCCCCE
Q psy1304 43 KEDRI-GESQPFRGQTLSVQDKIRPGRGSNPRPSAYKAD--APTSNLTRLGLLGARDCLY-----------RENLIDIPI 108 (184)
Q Consensus 43 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~--~~~~~~~~iaLAGrr~~lg-----------~~~~~~v~~ 108 (184)
+||+| .+-++|+||- +++++.+ ..++ ++||+|||++.+- ...+.+..+
T Consensus 5 ~yDvVIyGASGfTG~y----------------ivee~v~~~~~~~--~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~i 66 (423)
T KOG2733|consen 5 RYDVVIYGASGFTGKY----------------IVEEAVSSQVFEG--LSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSVI 66 (423)
T ss_pred eeeEEEEcccccccee----------------eHHHHhhhhcccC--ceEEEecCCHHHHHHHHHHHhhccCCCcccceE
Confidence 68887 8999999999 8888886 7777 9999999987422 223355559
Q ss_pred EEEeCCCHHHHHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEeeCCCChHHHHHHHHHhHHHHHHcCCeeeC
Q psy1304 109 IIADLKNESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVQKCT 184 (184)
Q Consensus 109 v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltGE~~~~~~ii~~lhe~AkaaGV~Ivt 184 (184)
+.+|.+|+++|.+|++++.+||||+|||..+|++|++||+++|+||+|++||+.|++.++.+||++|+++||+||+
T Consensus 67 ~i~D~~n~~Sl~emak~~~vivN~vGPyR~hGE~VVkacienG~~~vDISGEP~f~E~mq~kYhd~A~ekGVYIVs 142 (423)
T KOG2733|consen 67 LIADSANEASLDEMAKQARVIVNCVGPYRFHGEPVVKACIENGTHHVDISGEPQFMERMQLKYHDLAKEKGVYIVS 142 (423)
T ss_pred EEecCCCHHHHHHHHhhhEEEEeccccceecCcHHHHHHHHcCCceeccCCCHHHHHHHHHHHHHHHHhcCeEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999985
No 2
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=99.88 E-value=3.5e-23 Score=186.18 Aligned_cols=125 Identities=30% Similarity=0.426 Sum_probs=106.4
Q ss_pred hhhccccc-cccCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeeccccccc--CCCCCCEEEEeCCCH
Q psy1304 40 KQRKEDRI-GESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRE--NLIDIPIIIADLKNE 116 (184)
Q Consensus 40 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~--~~~~v~~v~vDv~D~ 116 (184)
+.|.+|.| -+-++|.|+. +++||++.+-. -+||||+..+-.. +.-..++...++.++
T Consensus 3 ~e~e~d~iiYGAtGy~G~l----------------vae~l~~~g~~----~aLAgRs~~kl~~l~~~LG~~~~~~p~~~p 62 (382)
T COG3268 3 MEREYDIIIYGATGYAGGL----------------VAEYLAREGLT----AALAGRSSAKLDALRASLGPEAAVFPLGVP 62 (382)
T ss_pred CCcceeEEEEccccchhHH----------------HHHHHHHcCCc----hhhccCCHHHHHHHHHhcCccccccCCCCH
Confidence 35778877 8999999999 99999998844 4999998743210 001244555556679
Q ss_pred HHHHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEeeCCCChHHHHHHHHHhHHHHHHcCCeeeC
Q psy1304 117 SSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVQKCT 184 (184)
Q Consensus 117 ~sL~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltGE~~~~~~ii~~lhe~AkaaGV~Ivt 184 (184)
+.+++++.+++||+||||||..+|+++++||+.+||||+|||||..|++++|..||++|+++|+.||.
T Consensus 63 ~~~~~~~~~~~VVlncvGPyt~~g~plv~aC~~~GTdY~DiTGEi~~fe~~i~~yh~~A~~~Ga~Ii~ 130 (382)
T COG3268 63 AALEAMASRTQVVLNCVGPYTRYGEPLVAACAAAGTDYADITGEIMFFENSIDLYHAQAADAGARIIP 130 (382)
T ss_pred HHHHHHHhcceEEEeccccccccccHHHHHHHHhCCCeeeccccHHHHHHHHHHHHHHHHhcCCEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999973
No 3
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=99.72 E-value=1.6e-17 Score=146.97 Aligned_cols=113 Identities=22% Similarity=0.331 Sum_probs=88.7
Q ss_pred ccccCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeeccccccc-----CCCCCCEEEEeCCCHHHHHH
Q psy1304 47 IGESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRE-----NLIDIPIIIADLKNESSILI 121 (184)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~-----~~~~v~~v~vDv~D~~sL~a 121 (184)
|.+. ++.|+. ++.+|++.++. .+|.+++|+.+.... ...+++++++|++|+++|.+
T Consensus 3 vlG~-G~vG~~----------------~~~~L~~~~~~--~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 63 (386)
T PF03435_consen 3 VLGA-GRVGSA----------------IARLLARRGPF--EEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAE 63 (386)
T ss_dssp EE---SHHHHH----------------HHHHHHCTTCE---EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHH
T ss_pred EEcC-cHHHHH----------------HHHHHhcCCCC--CcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHH
Confidence 3455 777777 88999988877 599999998764321 22678999999999999999
Q ss_pred HhhcCcEEEeccccccccchHHHHHHHHcCCCEeeCCCChHHHHHHHHHhHHHHHHcCCeeeC
Q psy1304 122 MAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVQKCT 184 (184)
Q Consensus 122 ~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltGE~~~~~~ii~~lhe~AkaaGV~Ivt 184 (184)
+++++|+||||+||| ++.+++++|+++|+||||.+. +... +++||++|+++|+++++
T Consensus 64 ~~~~~dvVin~~gp~--~~~~v~~~~i~~g~~yvD~~~---~~~~-~~~l~~~a~~~g~~~l~ 120 (386)
T PF03435_consen 64 LLRGCDVVINCAGPF--FGEPVARACIEAGVHYVDTSY---VTEE-MLALDEEAKEAGVTALP 120 (386)
T ss_dssp HHTTSSEEEE-SSGG--GHHHHHHHHHHHT-EEEESS----HHHH-HHHCHHHHHHTTSEEE-
T ss_pred HHhcCCEEEECCccc--hhHHHHHHHHHhCCCeeccch---hHHH-HHHHHHHHHhhCCEEEe
Confidence 999999999999999 778999999999999999655 3444 48999999999999874
No 4
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=99.45 E-value=1.8e-13 Score=125.09 Aligned_cols=102 Identities=12% Similarity=0.157 Sum_probs=84.1
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc----CCCCCCEEEEeCCCHHHHHHHhhcCcEEEeccccccccchHHHHHHHH
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE----NLIDIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYGEAVVKACIE 149 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~----~~~~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~g~~VaeACie 149 (184)
++..||+... -+|.+|+|+.++-.. ..++++.+++|++|.++|.+++++.|+||||++||+.. .+++||++
T Consensus 16 va~~la~~~d---~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~~~--~i~ka~i~ 90 (389)
T COG1748 16 VAHKLAQNGD---GEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFVDL--TILKACIK 90 (389)
T ss_pred HHHHHHhCCC---ceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchhhH--HHHHHHHH
Confidence 5555565543 589999997543221 12479999999999999999999999999999888765 99999999
Q ss_pred cCCCEeeCCCChHHHHHHHHHhHHHHHHcCCeeeC
Q psy1304 150 AKTHHVDITGEPYFMEYMQYEYNTRAQESEVQKCT 184 (184)
Q Consensus 150 AGthYVDltGE~~~~~~ii~~lhe~AkaaGV~Ivt 184 (184)
+|+||+|++...+. . ++|+++|+++|+++|+
T Consensus 91 ~gv~yvDts~~~~~---~-~~~~~~a~~Agit~v~ 121 (389)
T COG1748 91 TGVDYVDTSYYEEP---P-WKLDEEAKKAGITAVL 121 (389)
T ss_pred hCCCEEEcccCCch---h-hhhhHHHHHcCeEEEc
Confidence 99999999988776 3 5899999999999874
No 5
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=98.86 E-value=5e-09 Score=105.75 Aligned_cols=123 Identities=20% Similarity=0.192 Sum_probs=88.8
Q ss_pred CccccceeeecccccCCCCCCCchhhhhhhCCCC----------CceeEEeeeeccccccc---CCCCCCEEEEeCCCHH
Q psy1304 51 QPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTS----------NLTRLGLLGARDCLYRE---NLIDIPIIIADLKNES 117 (184)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~----------~~~~iaLAGrr~~lg~~---~~~~v~~v~vDv~D~~ 117 (184)
...+.|.+.|-|-=+-|+ ..+.+|++.+.- ..+.++++.++.+.... ..++++.+++|+.|.+
T Consensus 565 ~~~~~~rIlVLGAG~VG~----~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e 640 (1042)
T PLN02819 565 VTKKSQNVLILGAGRVCR----PAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSE 640 (1042)
T ss_pred ccccCCcEEEECCCHHHH----HHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHH
Confidence 345677777766333333 377888865321 01347777754432221 1246778999999999
Q ss_pred HHHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEeeCCCChHHHHHHHHHhHHHHHHcCCeee
Q psy1304 118 SILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVQKC 183 (184)
Q Consensus 118 sL~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltGE~~~~~~ii~~lhe~AkaaGV~Iv 183 (184)
+|.++++++|+||+|++++ +...++++|+++|+||+|.+-. ..++ .++++.|+++|++++
T Consensus 641 ~L~~~v~~~DaVIsalP~~--~H~~VAkaAieaGkHvv~eky~---~~e~-~~L~e~Ak~AGV~~m 700 (1042)
T PLN02819 641 SLLKYVSQVDVVISLLPAS--CHAVVAKACIELKKHLVTASYV---SEEM-SALDSKAKEAGITIL 700 (1042)
T ss_pred HHHHhhcCCCEEEECCCch--hhHHHHHHHHHcCCCEEECcCC---HHHH-HHHHHHHHHcCCEEE
Confidence 9999999999999999543 3589999999999999999833 3344 689999999999986
No 6
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.96 E-value=1.6e-05 Score=62.25 Aligned_cols=91 Identities=15% Similarity=0.157 Sum_probs=71.5
Q ss_pred ccccCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccccCCCCCCEEEEeCCCHHHHHHHhhcC
Q psy1304 47 IGESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRENLIDIPIIIADLKNESSILIMAKKC 126 (184)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~~~~~v~~v~vDv~D~~sL~a~l~~~ 126 (184)
|.+.++|-|+- ++.+|.+.. .++.+..|+...-.. ..++++++.|+.|++++.++++++
T Consensus 3 V~GatG~vG~~----------------l~~~L~~~~----~~V~~~~R~~~~~~~-~~~~~~~~~d~~d~~~~~~al~~~ 61 (183)
T PF13460_consen 3 VFGATGFVGRA----------------LAKQLLRRG----HEVTALVRSPSKAED-SPGVEIIQGDLFDPDSVKAALKGA 61 (183)
T ss_dssp EETTTSHHHHH----------------HHHHHHHTT----SEEEEEESSGGGHHH-CTTEEEEESCTTCHHHHHHHHTTS
T ss_pred EECCCChHHHH----------------HHHHHHHCC----CEEEEEecCchhccc-ccccccceeeehhhhhhhhhhhhc
Confidence 56778888887 778888776 456666677664433 578999999999999999999999
Q ss_pred cEEEecccccccc---chHHHHHHHHcCCC-EeeCC
Q psy1304 127 RVILNCVGPYTWY---GEAVVKACIEAKTH-HVDIT 158 (184)
Q Consensus 127 dVVIN~aGPf~~~---g~~VaeACieAGth-YVDlt 158 (184)
|+||+|+||-... -..++++|.++|+. ++-++
T Consensus 62 d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~s 97 (183)
T PF13460_consen 62 DAVIHAAGPPPKDVDAAKNIIEAAKKAGVKRVVYLS 97 (183)
T ss_dssp SEEEECCHSTTTHHHHHHHHHHHHHHTTSSEEEEEE
T ss_pred chhhhhhhhhcccccccccccccccccccccceeee
Confidence 9999999975542 26888999999995 66544
No 7
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=97.77 E-value=8.9e-05 Score=64.21 Aligned_cols=90 Identities=13% Similarity=0.091 Sum_probs=64.0
Q ss_pred ccccCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccc----cCCCCCCEEEEeCCCHHHHHHH
Q psy1304 47 IGESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYR----ENLIDIPIIIADLKNESSILIM 122 (184)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~----~~~~~v~~v~vDv~D~~sL~a~ 122 (184)
|-+.++|=|+- ++..|.+..+. ..|-+..++..... ...+...++++|+.|++++.++
T Consensus 2 VTGgsGflG~~----------------iv~~Ll~~g~~--~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a 63 (280)
T PF01073_consen 2 VTGGSGFLGSH----------------IVRQLLERGYI--YEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEA 63 (280)
T ss_pred EEcCCcHHHHH----------------HHHHHHHCCCc--eEEEEcccccccccchhhhcccceeEEEeccccHHHHHHH
Confidence 44567788877 88888877754 44444433332111 1112334899999999999999
Q ss_pred hhcCcEEEeccccccccc---------------hHHHHHHHHcCCCE
Q psy1304 123 AKKCRVILNCVGPYTWYG---------------EAVVKACIEAKTHH 154 (184)
Q Consensus 123 l~~~dVVIN~aGPf~~~g---------------~~VaeACieAGthY 154 (184)
++++|+|++||.|....+ .+|+++|.+.|+.+
T Consensus 64 ~~g~d~V~H~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~Vkr 110 (280)
T PF01073_consen 64 LEGVDVVFHTAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKAGVKR 110 (280)
T ss_pred hcCCceEEEeCccccccCcccHHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 999999999988753322 78999999999994
No 8
>CHL00194 ycf39 Ycf39; Provisional
Probab=97.69 E-value=0.00029 Score=60.73 Aligned_cols=93 Identities=12% Similarity=-0.024 Sum_probs=66.3
Q ss_pred ccccCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeeccccccc-CCCCCCEEEEeCCCHHHHHHHhhc
Q psy1304 47 IGESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRE-NLIDIPIIIADLKNESSILIMAKK 125 (184)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~-~~~~v~~v~vDv~D~~sL~a~l~~ 125 (184)
|.+.++|-|.- ++.+|.+.. -++....|+...... ...+++++..|+.|++++.+++++
T Consensus 5 VtGatG~iG~~----------------lv~~Ll~~g----~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g 64 (317)
T CHL00194 5 VIGATGTLGRQ----------------IVRQALDEG----YQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKG 64 (317)
T ss_pred EECCCcHHHHH----------------HHHHHHHCC----CeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCC
Confidence 46777888877 777887653 345444555322110 114688999999999999999999
Q ss_pred CcEEEecccccccc-----------chHHHHHHHHcCCC-EeeCCC
Q psy1304 126 CRVILNCVGPYTWY-----------GEAVVKACIEAKTH-HVDITG 159 (184)
Q Consensus 126 ~dVVIN~aGPf~~~-----------g~~VaeACieAGth-YVDltG 159 (184)
+|+||||+++.... ..++++||.++|+. +|-++.
T Consensus 65 ~d~Vi~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss 110 (317)
T CHL00194 65 VTAIIDASTSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSI 110 (317)
T ss_pred CCEEEECCCCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEecc
Confidence 99999998754321 15799999999984 666554
No 9
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=97.55 E-value=9.4e-05 Score=60.56 Aligned_cols=77 Identities=12% Similarity=0.114 Sum_probs=55.5
Q ss_pred hhhhhhhCCCCCceeEEeeeecccc--ccc-CCCCCCEEEEeCCCHHHHHHHhhcCcEEEecccccc----ccchHHHHH
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCL--YRE-NLIDIPIIIADLKNESSILIMAKKCRVILNCVGPYT----WYGEAVVKA 146 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~l--g~~-~~~~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~----~~g~~VaeA 146 (184)
++.+|.+ ++ .++-..-|+... ... .....+++.+|.+|+++|.++++++|.|+.+.++.. ....++++|
T Consensus 14 v~~~L~~--~~--~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~A 89 (233)
T PF05368_consen 14 VVRALLS--AG--FSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDA 89 (233)
T ss_dssp HHHHHHH--TT--GCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHH
T ss_pred HHHHHHh--CC--CCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcchhhhhhhhhhHHHh
Confidence 8888888 44 666666565321 100 114578999999999999999999999999998662 334899999
Q ss_pred HHHcCCCE
Q psy1304 147 CIEAKTHH 154 (184)
Q Consensus 147 CieAGthY 154 (184)
|.++|+.+
T Consensus 90 a~~agVk~ 97 (233)
T PF05368_consen 90 AKAAGVKH 97 (233)
T ss_dssp HHHHT-SE
T ss_pred hhccccce
Confidence 99999994
No 10
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=97.06 E-value=0.00074 Score=65.21 Aligned_cols=101 Identities=15% Similarity=0.090 Sum_probs=65.6
Q ss_pred CccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeeccccccc----------------CCCCCCEEEEeCC
Q psy1304 51 QPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRE----------------NLIDIPIIIADLK 114 (184)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~----------------~~~~v~~v~vDv~ 114 (184)
.-+.||++-|-|-- .+---+++.+|++. + .+|.+..|+.+.... ...++.++++|+.
T Consensus 76 ~~~~gKvVLVTGAT---GgIG~aLAr~LLk~--G--~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLt 148 (576)
T PLN03209 76 DTKDEDLAFVAGAT---GKVGSRTVRELLKL--G--FRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLE 148 (576)
T ss_pred ccCCCCEEEEECCC---CHHHHHHHHHHHHC--C--CeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCC
Confidence 34667777666621 11111255666654 3 566666675432110 0134789999999
Q ss_pred CHHHHHHHhhcCcEEEeccccccc--------------cchHHHHHHHHcCCC-EeeCC
Q psy1304 115 NESSILIMAKKCRVILNCVGPYTW--------------YGEAVVKACIEAKTH-HVDIT 158 (184)
Q Consensus 115 D~~sL~a~l~~~dVVIN~aGPf~~--------------~g~~VaeACieAGth-YVDlt 158 (184)
|.+++.+.+.++|+||||+|.... ....++++|.+.|+. +|-++
T Consensus 149 D~esI~~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VS 207 (576)
T PLN03209 149 KPDQIGPALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVT 207 (576)
T ss_pred CHHHHHHHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 999999999999999999996521 126788999998874 66554
No 11
>KOG2865|consensus
Probab=96.92 E-value=0.002 Score=58.79 Aligned_cols=57 Identities=25% Similarity=0.394 Sum_probs=51.1
Q ss_pred CCCCCCEEEEeCCCHHHHHHHhhcCcEEEeccccccccc------------hHHHHHHHHcCCC-EeeCC
Q psy1304 102 NLIDIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYG------------EAVVKACIEAKTH-HVDIT 158 (184)
Q Consensus 102 ~~~~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~g------------~~VaeACieAGth-YVDlt 158 (184)
.++++-+...|+.|++++.++++.+.||||.+|--+.++ +.+++.|-++|+. ||+++
T Consensus 107 dLGQvl~~~fd~~DedSIr~vvk~sNVVINLIGrd~eTknf~f~Dvn~~~aerlAricke~GVerfIhvS 176 (391)
T KOG2865|consen 107 DLGQVLFMKFDLRDEDSIRAVVKHSNVVINLIGRDYETKNFSFEDVNVHIAERLARICKEAGVERFIHVS 176 (391)
T ss_pred cccceeeeccCCCCHHHHHHHHHhCcEEEEeeccccccCCcccccccchHHHHHHHHHHhhChhheeehh
Confidence 457889999999999999999999999999999766554 7899999999998 99976
No 12
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=96.90 E-value=0.0034 Score=52.24 Aligned_cols=93 Identities=8% Similarity=0.045 Sum_probs=61.1
Q ss_pred ccccCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecc-----ccccc--CCCCCCEEEEeCCCHHHH
Q psy1304 47 IGESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARD-----CLYRE--NLIDIPIIIADLKNESSI 119 (184)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~-----~lg~~--~~~~v~~v~vDv~D~~sL 119 (184)
|.+.++|-|+. ++.+|.+..++ .++.+..|.. ..-.. ...+++++.+|+.|++++
T Consensus 4 ItGatG~iG~~----------------l~~~l~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~ 65 (317)
T TIGR01181 4 VTGGAGFIGSN----------------FVRYILNEHPD--AEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELV 65 (317)
T ss_pred EEcCCchHHHH----------------HHHHHHHhCCC--CEEEEecCCCcchhhhhhhhhccCCCcEEEEcCCcCHHHH
Confidence 45666777777 67777766655 4554443311 00000 113578899999999999
Q ss_pred HHHhhc--CcEEEecccccccc----------------chHHHHHHHHc--CCCEeeC
Q psy1304 120 LIMAKK--CRVILNCVGPYTWY----------------GEAVVKACIEA--KTHHVDI 157 (184)
Q Consensus 120 ~a~l~~--~dVVIN~aGPf~~~----------------g~~VaeACieA--GthYVDl 157 (184)
.+++++ +|+||||+|+.... ...++++|.+. +..++-+
T Consensus 66 ~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~ 123 (317)
T TIGR01181 66 SRLFTEHQPDAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHI 123 (317)
T ss_pred HHHHhhcCCCEEEEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 999998 89999999975421 14688899886 3355544
No 13
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=96.84 E-value=0.005 Score=55.58 Aligned_cols=55 Identities=15% Similarity=0.211 Sum_probs=44.6
Q ss_pred CCCCEEEEeCCCHHHHHHHhh----cCcEEEeccccccc-----------cchHHHHHHHHcCCC-EeeCC
Q psy1304 104 IDIPIIIADLKNESSILIMAK----KCRVILNCVGPYTW-----------YGEAVVKACIEAKTH-HVDIT 158 (184)
Q Consensus 104 ~~v~~v~vDv~D~~sL~a~l~----~~dVVIN~aGPf~~-----------~g~~VaeACieAGth-YVDlt 158 (184)
.+++++++|+.|++++.++++ ++|+||||+|+... ...+++++|.+.|+. +|-++
T Consensus 111 ~~v~~v~~Dl~d~~~l~~~~~~~~~~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iS 181 (390)
T PLN02657 111 PGAEVVFGDVTDADSLRKVLFSEGDPVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVLLS 181 (390)
T ss_pred CCceEEEeeCCCHHHHHHHHHHhCCCCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 468899999999999999998 59999999986421 125789999999986 66554
No 14
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=96.82 E-value=0.0073 Score=50.78 Aligned_cols=87 Identities=17% Similarity=0.326 Sum_probs=60.8
Q ss_pred ccccCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeeccccccc-CCCCCCEEEEeCCCHHHHHHHhhc
Q psy1304 47 IGESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRE-NLIDIPIIIADLKNESSILIMAKK 125 (184)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~-~~~~v~~v~vDv~D~~sL~a~l~~ 125 (184)
|.+.++|-|+. ++.+|++.. -++....|+...... ....++++.+|+.|++++.+++++
T Consensus 5 ItG~~G~iG~~----------------l~~~L~~~g----~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~ 64 (328)
T TIGR03466 5 VTGATGFVGSA----------------VVRLLLEQG----EEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAG 64 (328)
T ss_pred EECCccchhHH----------------HHHHHHHCC----CEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhC
Confidence 45667777776 677777654 345555565433211 113578999999999999999999
Q ss_pred CcEEEeccccccccc--------------hHHHHHHHHcCCC
Q psy1304 126 CRVILNCVGPYTWYG--------------EAVVKACIEAKTH 153 (184)
Q Consensus 126 ~dVVIN~aGPf~~~g--------------~~VaeACieAGth 153 (184)
+|+|||+++++.... ..++++|.+.++.
T Consensus 65 ~d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~ 106 (328)
T TIGR03466 65 CRALFHVAADYRLWAPDPEEMYAANVEGTRNLLRAALEAGVE 106 (328)
T ss_pred CCEEEEeceecccCCCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999998652211 5678889988763
No 15
>PLN02214 cinnamoyl-CoA reductase
Probab=96.80 E-value=0.0038 Score=54.68 Aligned_cols=49 Identities=22% Similarity=0.304 Sum_probs=41.7
Q ss_pred CCCEEEEeCCCHHHHHHHhhcCcEEEecccccccc-----------chHHHHHHHHcCCC
Q psy1304 105 DIPIIIADLKNESSILIMAKKCRVILNCVGPYTWY-----------GEAVVKACIEAKTH 153 (184)
Q Consensus 105 ~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~-----------g~~VaeACieAGth 153 (184)
+++++.+|+.|++++.++++++|+||||+||+... -..++++|.++|+.
T Consensus 61 ~~~~~~~Dl~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~ 120 (342)
T PLN02214 61 RLILCKADLQDYEALKAAIDGCDGVFHTASPVTDDPEQMVEPAVNGAKFVINAAAEAKVK 120 (342)
T ss_pred cEEEEecCcCChHHHHHHHhcCCEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46788999999999999999999999999997532 15789999999874
No 16
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=96.74 E-value=0.005 Score=51.75 Aligned_cols=90 Identities=6% Similarity=-0.126 Sum_probs=64.5
Q ss_pred ccccCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccccCCCCCCEEEEeCCCHHHHHHHh---
Q psy1304 47 IGESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRENLIDIPIIIADLKNESSILIMA--- 123 (184)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~~~~~v~~v~vDv~D~~sL~a~l--- 123 (184)
|.+.++|-|+. ++.+|.+.. .++....|+.... ....++.+.+|.+|+++|.+++
T Consensus 4 VtGatG~iG~~----------------vv~~L~~~g----~~V~~~~R~~~~~--~~~~~~~~~~d~~d~~~l~~a~~~~ 61 (285)
T TIGR03649 4 LTGGTGKTASR----------------IARLLQAAS----VPFLVASRSSSSS--AGPNEKHVKFDWLDEDTWDNPFSSD 61 (285)
T ss_pred EEcCCChHHHH----------------HHHHHHhCC----CcEEEEeCCCccc--cCCCCccccccCCCHHHHHHHHhcc
Confidence 45677777776 777887653 3444555655432 2256778889999999999999
Q ss_pred ---hc-CcEEEeccccccc---cchHHHHHHHHcCCC-EeeCC
Q psy1304 124 ---KK-CRVILNCVGPYTW---YGEAVVKACIEAKTH-HVDIT 158 (184)
Q Consensus 124 ---~~-~dVVIN~aGPf~~---~g~~VaeACieAGth-YVDlt 158 (184)
++ +|.|+.|.++... ...+++++|.++|+. +|-++
T Consensus 62 ~~~~g~~d~v~~~~~~~~~~~~~~~~~i~aa~~~gv~~~V~~S 104 (285)
T TIGR03649 62 DGMEPEISAVYLVAPPIPDLAPPMIKFIDFARSKGVRRFVLLS 104 (285)
T ss_pred cCcCCceeEEEEeCCCCCChhHHHHHHHHHHHHcCCCEEEEee
Confidence 67 9999999876532 246889999999985 55444
No 17
>KOG0172|consensus
Probab=96.51 E-value=0.0049 Score=57.69 Aligned_cols=101 Identities=16% Similarity=0.205 Sum_probs=75.6
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc--CCCCCCEEEEeCCCHH-HHHHHhhcCcEEEeccccccccchHHHHHHHHc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE--NLIDIPIIIADLKNES-SILIMAKKCRVILNCVGPYTWYGEAVVKACIEA 150 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~--~~~~v~~v~vDv~D~~-sL~a~l~~~dVVIN~aGPf~~~g~~VaeACieA 150 (184)
.+.|||+. .+ +.|.+|.+....++. .-.+++.+.+|+.|++ .|++.++..|+|++.. ||..+ .-|+++|+..
T Consensus 17 ~~d~ls~~-~d--v~vtva~~~~~~~~~~~~~~~~~av~ldv~~~~~~L~~~v~~~D~viSLl-P~t~h-~lVaK~~i~~ 91 (445)
T KOG0172|consen 17 VADFLSRK-KD--VNVTVASRTLKDAEALVKGINIKAVSLDVADEELALRKEVKPLDLVISLL-PYTFH-PLVAKGCIIT 91 (445)
T ss_pred HHHHHhhc-CC--ceEEEehhhHHHHHHHhcCCCccceEEEccchHHHHHhhhcccceeeeec-cchhh-HHHHHHHHHh
Confidence 45677743 45 788888864432221 1145899999999988 9999999999999997 88654 7899999999
Q ss_pred CCCEeeCCCChHHHHHHHHHhHHHHHHcCCeee
Q psy1304 151 KTHHVDITGEPYFMEYMQYEYNTRAQESEVQKC 183 (184)
Q Consensus 151 GthYVDltGE~~~~~~ii~~lhe~AkaaGV~Iv 183 (184)
+.|-+--+ |+..-..++++.|+.+|++++
T Consensus 92 ~~~~vtsS----yv~pe~~~L~~~~v~AG~ti~ 120 (445)
T KOG0172|consen 92 KEDSVTSS----YVDPELEELEKAAVPAGSTIM 120 (445)
T ss_pred hccccccc----ccCHHHHhhhhhccCCCceEe
Confidence 99866543 222223678999999999986
No 18
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=96.50 E-value=0.0092 Score=51.93 Aligned_cols=83 Identities=8% Similarity=0.113 Sum_probs=56.5
Q ss_pred hhhhhhhCCCCCceeEEeeeecccccc-----cCCCCCCEEEEeCCCHHHHHHHhhcCcEEEeccccccc----c-----
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYR-----ENLIDIPIIIADLKNESSILIMAKKCRVILNCVGPYTW----Y----- 139 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~-----~~~~~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~----~----- 139 (184)
++.+|+...+. .+|.+..|+..... ....++.++.+|+.|++++.++++++|+|||++|.... .
T Consensus 20 l~~~L~~~g~~--~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih~Ag~~~~~~~~~~~~~~ 97 (324)
T TIGR03589 20 FISRLLENYNP--KKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVHAAALKQVPAAEYNPFEC 97 (324)
T ss_pred HHHHHHHhCCC--cEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhcCCEEEECcccCCCchhhcCHHHH
Confidence 56666655433 45665555432210 01135788999999999999999999999999995321 1
Q ss_pred -------chHHHHHHHHcCCC-EeeCC
Q psy1304 140 -------GEAVVKACIEAKTH-HVDIT 158 (184)
Q Consensus 140 -------g~~VaeACieAGth-YVDlt 158 (184)
...++++|.+.|+. .|-++
T Consensus 98 ~~~Nv~g~~~ll~aa~~~~~~~iV~~S 124 (324)
T TIGR03589 98 IRTNINGAQNVIDAAIDNGVKRVVALS 124 (324)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 15788999999874 55554
No 19
>PRK06179 short chain dehydrogenase; Provisional
Probab=96.39 E-value=0.0058 Score=50.57 Aligned_cols=58 Identities=14% Similarity=0.119 Sum_probs=43.8
Q ss_pred hhhhhhhCCCCCceeEEeeeecccccccCCCCCCEEEEeCCCHHHHHHHhhc-------CcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRENLIDIPIIIADLKNESSILIMAKK-------CRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~~~~~v~~v~vDv~D~~sL~a~l~~-------~dVVIN~aGPf 136 (184)
++..|++. + -++.+.+|+..... ...++.++++|+.|++++++++++ .|+||||+|+.
T Consensus 20 ~a~~l~~~--g--~~V~~~~r~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~~d~li~~ag~~ 84 (270)
T PRK06179 20 TAEKLARA--G--YRVFGTSRNPARAA-PIPGVELLELDVTDDASVQAAVDEVIARAGRIDVLVNNAGVG 84 (270)
T ss_pred HHHHHHHC--C--CEEEEEeCChhhcc-ccCCCeeEEeecCCHHHHHHHHHHHHHhCCCCCEEEECCCCC
Confidence 56666654 3 56777777654322 335788999999999999999885 59999999975
No 20
>PLN02427 UDP-apiose/xylose synthase
Probab=96.36 E-value=0.01 Score=52.45 Aligned_cols=94 Identities=15% Similarity=0.074 Sum_probs=61.7
Q ss_pred cccccCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccc-------cc-cCCCCCCEEEEeCCCHH
Q psy1304 46 RIGESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCL-------YR-ENLIDIPIIIADLKNES 117 (184)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~l-------g~-~~~~~v~~v~vDv~D~~ 117 (184)
.|-+.++|-|.- ++.+|.... + -+|....|+... +. ....+++++..|+.|.+
T Consensus 18 lVTGgtGfIGs~----------------lv~~L~~~~-g--~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~ 78 (386)
T PLN02427 18 CMIGAGGFIGSH----------------LCEKLMTET-P--HKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDS 78 (386)
T ss_pred EEECCcchHHHH----------------HHHHHHhcC-C--CEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChH
Confidence 457778888877 667776542 2 233323333221 00 01136889999999999
Q ss_pred HHHHHhhcCcEEEecccccc-----cc-----------chHHHHHHHHcCCCEeeCC
Q psy1304 118 SILIMAKKCRVILNCVGPYT-----WY-----------GEAVVKACIEAKTHHVDIT 158 (184)
Q Consensus 118 sL~a~l~~~dVVIN~aGPf~-----~~-----------g~~VaeACieAGthYVDlt 158 (184)
.+.++++++|+|||||+... .. ..+++++|.+.|..+|-++
T Consensus 79 ~l~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~~r~v~~S 135 (386)
T PLN02427 79 RLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFS 135 (386)
T ss_pred HHHHHhhcCCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 99999999999999998321 10 1467888988886666554
No 21
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=96.28 E-value=0.021 Score=49.46 Aligned_cols=86 Identities=14% Similarity=0.068 Sum_probs=58.3
Q ss_pred ccccCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccc------cc---c----CCCCCCEEEEeC
Q psy1304 47 IGESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCL------YR---E----NLIDIPIIIADL 113 (184)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~l------g~---~----~~~~v~~v~vDv 113 (184)
|-+.++|=|.- ++.+|.... .+|.+..|+... .. . ...+++++++|+
T Consensus 5 VTGatGfIG~~----------------l~~~L~~~G----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl 64 (343)
T TIGR01472 5 ITGITGQDGSY----------------LAEFLLEKG----YEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDL 64 (343)
T ss_pred EEcCCCcHHHH----------------HHHHHHHCC----CEEEEEecCCcccchhhhhhhhhccccccccceeEEEecc
Confidence 45667787777 667776553 445555554321 00 0 013478999999
Q ss_pred CCHHHHHHHhhc--CcEEEecccccccc---------------c-hHHHHHHHHcCC
Q psy1304 114 KNESSILIMAKK--CRVILNCVGPYTWY---------------G-EAVVKACIEAKT 152 (184)
Q Consensus 114 ~D~~sL~a~l~~--~dVVIN~aGPf~~~---------------g-~~VaeACieAGt 152 (184)
.|.+++.+++++ +|+|||||++.... | .+++++|.++|+
T Consensus 65 ~d~~~l~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~ 121 (343)
T TIGR01472 65 TDSSNLRRIIDEIKPTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGL 121 (343)
T ss_pred CCHHHHHHHHHhCCCCEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999996 59999999863210 1 578999999885
No 22
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=96.26 E-value=0.0016 Score=50.06 Aligned_cols=116 Identities=8% Similarity=-0.027 Sum_probs=66.3
Q ss_pred cccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccccCCCCCC--EEEEeCCCHHHHHHHhhcCcEEE
Q psy1304 53 FRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRENLIDIP--IIIADLKNESSILIMAKKCRVIL 130 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~~~~~v~--~v~vDv~D~~sL~a~l~~~dVVI 130 (184)
++++.+.+-|-=.-|+. ++.+|++.. . -++.+.+|+.+.......... .+..+..|. .++++++|+||
T Consensus 17 ~~~~~i~iiG~G~~g~~----~a~~l~~~g-~--~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Dvvi 86 (155)
T cd01065 17 LKGKKVLILGAGGAARA----VAYALAELG-A--AKIVIVNRTLEKAKALAERFGELGIAIAYLDL---EELLAEADLII 86 (155)
T ss_pred CCCCEEEEECCcHHHHH----HHHHHHHCC-C--CEEEEEcCCHHHHHHHHHHHhhcccceeecch---hhccccCCEEE
Confidence 45566665552111222 555665543 3 467777765443221111111 122344443 34478999999
Q ss_pred eccccccc--cchHHHHHHHHcCCCEeeCCCChHHHHHHHHHhHHHHHHcCCeee
Q psy1304 131 NCVGPYTW--YGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVQKC 183 (184)
Q Consensus 131 N~aGPf~~--~g~~VaeACieAGthYVDltGE~~~~~~ii~~lhe~AkaaGV~Iv 183 (184)
+|++|... ........++..|+..+|++-.+... .+.+++++.|+.++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~~~~~-----~l~~~~~~~g~~~v 136 (155)
T cd01065 87 NTTPVGMKPGDELPLPPSLLKPGGVVYDVVYNPLET-----PLLKEARALGAKTI 136 (155)
T ss_pred eCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcCCCCC-----HHHHHHHHCCCcee
Confidence 99987764 23344456788999999997554322 46667888887665
No 23
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.04 E-value=0.011 Score=50.80 Aligned_cols=64 Identities=16% Similarity=0.114 Sum_probs=43.3
Q ss_pred CHHHHHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEeeCCCChHHHHHHHHHhHHHHHHcCCee
Q psy1304 115 NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVQK 182 (184)
Q Consensus 115 D~~sL~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltGE~~~~~~ii~~lhe~AkaaGV~I 182 (184)
...+++++++++|+||++..|... ..++++|+++|+|.| .|-+.|..+-.+++.+.++..++.+
T Consensus 50 ~~~dl~~ll~~~DvVid~t~p~~~--~~~~~~al~~G~~vv--igttG~s~~~~~~l~~aa~~~~v~~ 113 (257)
T PRK00048 50 ITDDLEAVLADADVLIDFTTPEAT--LENLEFALEHGKPLV--IGTTGFTEEQLAELEEAAKKIPVVI 113 (257)
T ss_pred ccCCHHHhccCCCEEEECCCHHHH--HHHHHHHHHcCCCEE--EECCCCCHHHHHHHHHHhcCCCEEE
Confidence 344577778899999999977654 689999999999966 2333333332356666554445443
No 24
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=96.01 E-value=0.022 Score=48.26 Aligned_cols=50 Identities=16% Similarity=0.334 Sum_probs=40.2
Q ss_pred CCCCEEEEeCCCHHHHHHHhhcCcEEEecccccccc-c--------------hHHHHHHHHc-CCC
Q psy1304 104 IDIPIIIADLKNESSILIMAKKCRVILNCVGPYTWY-G--------------EAVVKACIEA-KTH 153 (184)
Q Consensus 104 ~~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~-g--------------~~VaeACieA-Gth 153 (184)
.+++++..|+.|++++.++++++|.|||++||.... . ..++++|.+. ++.
T Consensus 55 ~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~ 120 (322)
T PLN02662 55 ERLHLFKANLLEEGSFDSVVDGCEGVFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVK 120 (322)
T ss_pred CceEEEeccccCcchHHHHHcCCCEEEEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 367889999999999999999999999999985321 0 4578888887 663
No 25
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=96.01 E-value=0.021 Score=47.65 Aligned_cols=52 Identities=10% Similarity=0.139 Sum_probs=40.2
Q ss_pred CCCEEEEeCCCHHHHHHHhh--cCcEEEecccccccc----------------chHHHHHHHHcCCC-Eee
Q psy1304 105 DIPIIIADLKNESSILIMAK--KCRVILNCVGPYTWY----------------GEAVVKACIEAKTH-HVD 156 (184)
Q Consensus 105 ~v~~v~vDv~D~~sL~a~l~--~~dVVIN~aGPf~~~----------------g~~VaeACieAGth-YVD 156 (184)
+++++.+|+.|++++.++++ +.|+||||+|+.... ...++++|.+.|+. +|=
T Consensus 48 ~~~~~~~D~~~~~~~~~~~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~ 118 (328)
T TIGR01179 48 RVTFVEGDLRDRELLDRLFEEHKIDAVIHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIF 118 (328)
T ss_pred ceEEEECCCCCHHHHHHHHHhCCCcEEEECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEE
Confidence 46688999999999999997 689999999965221 14678889988853 443
No 26
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=96.00 E-value=0.019 Score=50.19 Aligned_cols=91 Identities=14% Similarity=0.024 Sum_probs=61.5
Q ss_pred cccccCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeeccc-----c-------cccCCCCCCEEEEeC
Q psy1304 46 RIGESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDC-----L-------YRENLIDIPIIIADL 113 (184)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~-----l-------g~~~~~~v~~v~vDv 113 (184)
.|-+.++|-|.. ++.+|.+.... + +++. |... + +.....++.++..|+
T Consensus 19 lVtGatGfiG~~----------------lv~~L~~~g~~--V-~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di 78 (348)
T PRK15181 19 LITGVAGFIGSG----------------LLEELLFLNQT--V-IGLD-NFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDI 78 (348)
T ss_pred EEECCccHHHHH----------------HHHHHHHCCCE--E-EEEe-CCCCcchhhhhhhhhccccccCCceEEEEccC
Confidence 347888999988 67777765433 2 2332 2111 1 000113577899999
Q ss_pred CCHHHHHHHhhcCcEEEeccccccc----c------------chHHHHHHHHcCCC-Eee
Q psy1304 114 KNESSILIMAKKCRVILNCVGPYTW----Y------------GEAVVKACIEAKTH-HVD 156 (184)
Q Consensus 114 ~D~~sL~a~l~~~dVVIN~aGPf~~----~------------g~~VaeACieAGth-YVD 156 (184)
.|.+.+.++++++|+|||+|+.... . ..+++++|.+.|+. +|-
T Consensus 79 ~d~~~l~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~ 138 (348)
T PRK15181 79 RKFTDCQKACKNVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTY 138 (348)
T ss_pred CCHHHHHHHhhCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence 9999999999999999999974221 1 15899999999984 443
No 27
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=95.99 E-value=0.017 Score=48.17 Aligned_cols=78 Identities=12% Similarity=0.074 Sum_probs=55.5
Q ss_pred ccccCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccccCCCCCCEEEEeCCCHHHHHHHhhcC
Q psy1304 47 IGESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRENLIDIPIIIADLKNESSILIMAKKC 126 (184)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~~~~~v~~v~vDv~D~~sL~a~l~~~ 126 (184)
|.+.++|-|+. ++.+|.... -++.+..|+ ..|+.|++++.++++++
T Consensus 4 v~G~tG~iG~~----------------l~~~l~~~g----~~v~~~~r~--------------~~d~~~~~~~~~~~~~~ 49 (287)
T TIGR01214 4 ITGANGQLGRE----------------LVQQLSPEG----RVVVALTSS--------------QLDLTDPEALERLLRAI 49 (287)
T ss_pred EEcCCCHHHHH----------------HHHHHHhcC----CEEEEeCCc--------------ccCCCCHHHHHHHHHhC
Confidence 46677888887 777777653 233333332 47899999999999986
Q ss_pred --cEEEecccccccc----------------chHHHHHHHHcCCCEeeCC
Q psy1304 127 --RVILNCVGPYTWY----------------GEAVVKACIEAKTHHVDIT 158 (184)
Q Consensus 127 --dVVIN~aGPf~~~----------------g~~VaeACieAGthYVDlt 158 (184)
|+||||+|+.... ...++++|.+.|.++|-++
T Consensus 50 ~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v~~S 99 (287)
T TIGR01214 50 RPDAVVNTAAYTDVDGAESDPEKAFAVNALAPQNLARAAARHGARLVHIS 99 (287)
T ss_pred CCCEEEECCccccccccccCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 9999999974211 2567888988887766544
No 28
>PLN00198 anthocyanidin reductase; Provisional
Probab=95.95 E-value=0.013 Score=50.46 Aligned_cols=97 Identities=20% Similarity=0.168 Sum_probs=58.0
Q ss_pred cccCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeeccccc--------ccCCCCCCEEEEeCCCHHHH
Q psy1304 48 GESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLY--------RENLIDIPIIIADLKNESSI 119 (184)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg--------~~~~~~v~~v~vDv~D~~sL 119 (184)
++-+||+|+++-|.|- +--|-.+|++..-..--++.+-.|+.... ....++++++.+|+.|++++
T Consensus 2 ~~~~~~~~~~vlItG~-------~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~ 74 (338)
T PLN00198 2 ATLTPTGKKTACVIGG-------TGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESF 74 (338)
T ss_pred CcccCCCCCeEEEECC-------chHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHH
Confidence 3457788887777661 11244444422111113443333433210 00113577889999999999
Q ss_pred HHHhhcCcEEEecccccccc-c--------------hHHHHHHHHcC
Q psy1304 120 LIMAKKCRVILNCVGPYTWY-G--------------EAVVKACIEAK 151 (184)
Q Consensus 120 ~a~l~~~dVVIN~aGPf~~~-g--------------~~VaeACieAG 151 (184)
..+++++|.|||+|+|.... . ..++++|.+.+
T Consensus 75 ~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~ 121 (338)
T PLN00198 75 EAPIAGCDLVFHVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAK 121 (338)
T ss_pred HHHHhcCCEEEEeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999964211 0 35778887763
No 29
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=95.92 E-value=0.019 Score=46.47 Aligned_cols=61 Identities=11% Similarity=0.067 Sum_probs=42.7
Q ss_pred hhhhhhhCCCCCceeEEeeeecccccccCCCCCCEEEEeCCCHHHHHHHhh---cCcEEEecccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRENLIDIPIIIADLKNESSILIMAK---KCRVILNCVGPYT 137 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~~~~~v~~v~vDv~D~~sL~a~l~---~~dVVIN~aGPf~ 137 (184)
++.+|++..++ ..+.+..|+.... ....++.++++|+.|+++++++.+ +.|+|||++|...
T Consensus 16 ia~~l~~~~~~--~~v~~~~~~~~~~-~~~~~~~~~~~Dls~~~~~~~~~~~~~~id~li~~aG~~~ 79 (235)
T PRK09009 16 MVKQLLERYPD--ATVHATYRHHKPD-FQHDNVQWHALDVTDEAEIKQLSEQFTQLDWLINCVGMLH 79 (235)
T ss_pred HHHHHHHhCCC--CEEEEEccCCccc-cccCceEEEEecCCCHHHHHHHHHhcCCCCEEEECCcccc
Confidence 77888877666 5655544433221 122567789999999998877654 6899999999763
No 30
>PRK07856 short chain dehydrogenase; Provisional
Probab=95.86 E-value=0.013 Score=48.08 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=49.3
Q ss_pred cccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccccCCCCCCEEEEeCCCHHHHHHHhhcC------
Q psy1304 53 FRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRENLIDIPIIIADLKNESSILIMAKKC------ 126 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~~~~~v~~v~vDv~D~~sL~a~l~~~------ 126 (184)
|+||+.-|-|- .++--..++.+|++. + .++.+.+|+.+. ......+.++++|+.|++++.++++..
T Consensus 4 ~~~k~~lItGa---s~gIG~~la~~l~~~--g--~~v~~~~r~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 75 (252)
T PRK07856 4 LTGRVVLVTGG---TRGIGAGIARAFLAA--G--ATVVVCGRRAPE-TVDGRPAEFHAADVRDPDQVAALVDAIVERHGR 75 (252)
T ss_pred CCCCEEEEeCC---CchHHHHHHHHHHHC--C--CEEEEEeCChhh-hhcCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 56676666551 112011144555543 3 578888887643 112246789999999999999988754
Q ss_pred -cEEEeccccc
Q psy1304 127 -RVILNCVGPY 136 (184)
Q Consensus 127 -dVVIN~aGPf 136 (184)
|+|||++|..
T Consensus 76 id~vi~~ag~~ 86 (252)
T PRK07856 76 LDVLVNNAGGS 86 (252)
T ss_pred CCEEEECCCCC
Confidence 9999999854
No 31
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=95.84 E-value=0.029 Score=49.95 Aligned_cols=92 Identities=9% Similarity=-0.071 Sum_probs=61.2
Q ss_pred cccccCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccccCC-CCCCEEEEeCCCHHHHHHHhh
Q psy1304 46 RIGESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRENL-IDIPIIIADLKNESSILIMAK 124 (184)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~~~-~~v~~v~vDv~D~~sL~a~l~ 124 (184)
.|.+.++|-|.- ++.+|.+.. -+|....|+.....+.. ...+++..|+.|.+.+.++++
T Consensus 25 lVtGgtGfIG~~----------------l~~~L~~~G----~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 84 (370)
T PLN02695 25 CITGAGGFIASH----------------IARRLKAEG----HYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTK 84 (370)
T ss_pred EEECCccHHHHH----------------HHHHHHhCC----CEEEEEEeccccccccccccceEEECCCCCHHHHHHHHh
Confidence 346777787776 677777643 34444445332111111 125788899999999999999
Q ss_pred cCcEEEeccccccc-----------------cchHHHHHHHHcCC-CEeeC
Q psy1304 125 KCRVILNCVGPYTW-----------------YGEAVVKACIEAKT-HHVDI 157 (184)
Q Consensus 125 ~~dVVIN~aGPf~~-----------------~g~~VaeACieAGt-hYVDl 157 (184)
++|+||||++.... ...+++++|.+.|+ ++|-+
T Consensus 85 ~~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~ 135 (370)
T PLN02695 85 GVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYA 135 (370)
T ss_pred CCCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 99999999976420 01579999999998 45544
No 32
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=95.80 E-value=0.032 Score=48.65 Aligned_cols=52 Identities=10% Similarity=0.173 Sum_probs=45.7
Q ss_pred CCEEEEeCCCHHHHHHHhhc--CcEEEeccccccc-cchHHHHHHHHcCCCEeeC
Q psy1304 106 IPIIIADLKNESSILIMAKK--CRVILNCVGPYTW-YGEAVVKACIEAKTHHVDI 157 (184)
Q Consensus 106 v~~v~vDv~D~~sL~a~l~~--~dVVIN~aGPf~~-~g~~VaeACieAGthYVDl 157 (184)
...+..+..|.+++.+++++ .|+||+++.||.. ...+++++|.+.|++|+.+
T Consensus 44 ~~~v~~g~l~~~~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 44 ALTVHTGALDPQELREFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred CceEEECCCCHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 34677888899999999986 8999999999974 4689999999999999998
No 33
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=95.77 E-value=0.0094 Score=52.06 Aligned_cols=80 Identities=14% Similarity=0.055 Sum_probs=56.8
Q ss_pred cccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccc---cCCCCCCEEEEeCCCHHHHHHHhhc----
Q psy1304 53 FRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYR---ENLIDIPIIIADLKNESSILIMAKK---- 125 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~---~~~~~v~~v~vDv~D~~sL~a~l~~---- 125 (184)
++|-|+-+.| -+-| |--.||+..-..-=++-+.|||++.-. +..+.....+||+.|.++++++++.
T Consensus 3 ~tgnTiLITG---G~sG----IGl~lak~f~elgN~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~ 75 (245)
T COG3967 3 TTGNTILITG---GASG----IGLALAKRFLELGNTVIICGRNEERLAEAKAENPEIHTEVCDVADRDSRRELVEWLKKE 75 (245)
T ss_pred ccCcEEEEeC---Ccch----hhHHHHHHHHHhCCEEEEecCcHHHHHHHHhcCcchheeeecccchhhHHHHHHHHHhh
Confidence 5677766655 1122 778888655431137889999885322 2336788999999999998888764
Q ss_pred ---CcEEEecccccccc
Q psy1304 126 ---CRVILNCVGPYTWY 139 (184)
Q Consensus 126 ---~dVVIN~aGPf~~~ 139 (184)
-+++|||||-....
T Consensus 76 ~P~lNvliNNAGIqr~~ 92 (245)
T COG3967 76 YPNLNVLINNAGIQRNE 92 (245)
T ss_pred CCchheeeecccccchh
Confidence 68999999988776
No 34
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=95.67 E-value=0.057 Score=46.63 Aligned_cols=87 Identities=11% Similarity=0.005 Sum_probs=58.5
Q ss_pred cccccCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccc-cc---c--------CCCCCCEEEEeC
Q psy1304 46 RIGESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCL-YR---E--------NLIDIPIIIADL 113 (184)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~l-g~---~--------~~~~v~~v~vDv 113 (184)
.|-+.++|-|.- ++..|+... .++.+..|+... .. + ....++++.+|+
T Consensus 10 lVTGatGfiG~~----------------l~~~L~~~G----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl 69 (340)
T PLN02653 10 LITGITGQDGSY----------------LTEFLLSKG----YEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDL 69 (340)
T ss_pred EEECCCCccHHH----------------HHHHHHHCC----CEEEEEecccccccccchhhhccccccccCceEEEEecC
Confidence 346677777777 677777654 345444454321 00 0 013478899999
Q ss_pred CCHHHHHHHhhc--CcEEEeccccccc------------c----chHHHHHHHHcCC
Q psy1304 114 KNESSILIMAKK--CRVILNCVGPYTW------------Y----GEAVVKACIEAKT 152 (184)
Q Consensus 114 ~D~~sL~a~l~~--~dVVIN~aGPf~~------------~----g~~VaeACieAGt 152 (184)
.|.+++.+++++ .|+||||||.... . ...++++|.+.++
T Consensus 70 ~d~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~ 126 (340)
T PLN02653 70 SDASSLRRWLDDIKPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQ 126 (340)
T ss_pred CCHHHHHHHHHHcCCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999986 5999999996321 0 1677899998885
No 35
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=95.62 E-value=0.013 Score=52.16 Aligned_cols=47 Identities=23% Similarity=0.400 Sum_probs=41.0
Q ss_pred EeCCCHHHHHHHhhc--CcEEEeccccccccc-----------------hHHHHHHHHcCCCEeeCC
Q psy1304 111 ADLKNESSILIMAKK--CRVILNCVGPYTWYG-----------------EAVVKACIEAKTHHVDIT 158 (184)
Q Consensus 111 vDv~D~~sL~a~l~~--~dVVIN~aGPf~~~g-----------------~~VaeACieAGthYVDlt 158 (184)
+|+.|++.+.+++++ .|+||||| .|.... .+++++|.+.|..+|.++
T Consensus 34 ~Ditd~~~v~~~i~~~~PDvVIn~A-Ayt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiS 99 (281)
T COG1091 34 LDITDPDAVLEVIRETRPDVVINAA-AYTAVDKAESEPELAFAVNATGAENLARAAAEVGARLVHIS 99 (281)
T ss_pred ccccChHHHHHHHHhhCCCEEEECc-cccccccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEee
Confidence 799999999999995 59999999 465543 689999999999999887
No 36
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.61 E-value=0.0096 Score=49.49 Aligned_cols=82 Identities=12% Similarity=0.016 Sum_probs=50.6
Q ss_pred cCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeeccccccc----CCCCCCEEEEeCCCHHHHHHHhhc
Q psy1304 50 SQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRE----NLIDIPIIIADLKNESSILIMAKK 125 (184)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~----~~~~v~~v~vDv~D~~sL~a~l~~ 125 (184)
|..++||+.-|-|--. +||----++.+|++. + .++.+.+|++..... ......++++|+.|+++++++++.
T Consensus 2 ~~~l~~k~~lItGas~-~~gIG~a~a~~la~~--G--~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 76 (252)
T PRK06079 2 SGILSGKKIVVMGVAN-KRSIAWGCAQAIKDQ--G--ATVIYTYQNDRMKKSLQKLVDEEDLLVECDVASDESIERAFAT 76 (252)
T ss_pred ccccCCCEEEEeCCCC-CCchHHHHHHHHHHC--C--CEEEEecCchHHHHHHHhhccCceeEEeCCCCCHHHHHHHHHH
Confidence 3457888888877320 022111144444443 4 678888876432110 113467899999999999887653
Q ss_pred -------CcEEEeccccc
Q psy1304 126 -------CRVILNCVGPY 136 (184)
Q Consensus 126 -------~dVVIN~aGPf 136 (184)
.|++||++|..
T Consensus 77 ~~~~~g~iD~lv~nAg~~ 94 (252)
T PRK06079 77 IKERVGKIDGIVHAIAYA 94 (252)
T ss_pred HHHHhCCCCEEEEccccc
Confidence 69999999854
No 37
>PRK06182 short chain dehydrogenase; Validated
Probab=95.49 E-value=0.021 Score=47.61 Aligned_cols=59 Identities=15% Similarity=0.076 Sum_probs=41.7
Q ss_pred hhhhhhhCCCCCceeEEeeeecccccccC-CCCCCEEEEeCCCHHHHHHHhh-------cCcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYREN-LIDIPIIIADLKNESSILIMAK-------KCRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~~-~~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGPf 136 (184)
++.+|++. + -++.+.+|+.+...+. ..++.++++|+.|+++++++++ +.|+|||++|+.
T Consensus 19 la~~l~~~--G--~~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~~ag~~ 85 (273)
T PRK06182 19 TARRLAAQ--G--YTVYGAARRVDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVNNAGYG 85 (273)
T ss_pred HHHHHHHC--C--CEEEEEeCCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 55555543 3 5677777765422111 1358899999999999999887 689999999964
No 38
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=95.48 E-value=0.037 Score=47.98 Aligned_cols=92 Identities=21% Similarity=0.139 Sum_probs=59.0
Q ss_pred ccccCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeeccccccc--CCCCCCEEEEeCC-CHHHHHHHh
Q psy1304 47 IGESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRE--NLIDIPIIIADLK-NESSILIMA 123 (184)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~--~~~~v~~v~vDv~-D~~sL~a~l 123 (184)
|.+.++|-|.. ++.+|.... + -.|....|+...... ...+++++..|+. |.+.+.+++
T Consensus 6 VtGatGfiGs~----------------l~~~L~~~~-~--~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 66 (347)
T PRK11908 6 ILGVNGFIGHH----------------LSKRILETT-D--WEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEWIEYHV 66 (347)
T ss_pred EECCCcHHHHH----------------HHHHHHhCC-C--CeEEEEeCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHHH
Confidence 46677887777 556665432 2 223333343221110 1245889999997 778899999
Q ss_pred hcCcEEEeccccccc----------------cchHHHHHHHHcCCCEeeC
Q psy1304 124 KKCRVILNCVGPYTW----------------YGEAVVKACIEAKTHHVDI 157 (184)
Q Consensus 124 ~~~dVVIN~aGPf~~----------------~g~~VaeACieAGthYVDl 157 (184)
+++|+||||++.... ...+++++|.+.|.++|-+
T Consensus 67 ~~~d~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~~~~v~~ 116 (347)
T PRK11908 67 KKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFP 116 (347)
T ss_pred cCCCEEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 999999999874211 0147899999998776643
No 39
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=95.46 E-value=0.021 Score=48.78 Aligned_cols=49 Identities=22% Similarity=0.365 Sum_probs=39.1
Q ss_pred CCCCEEEEeCCCHHHHHHHhhcCcEEEecccccccc---------------chHHHHHHHHc-CC
Q psy1304 104 IDIPIIIADLKNESSILIMAKKCRVILNCVGPYTWY---------------GEAVVKACIEA-KT 152 (184)
Q Consensus 104 ~~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~---------------g~~VaeACieA-Gt 152 (184)
.+++++..|+.|++++.++++++|+|||+|||+... ...++++|.+. ++
T Consensus 56 ~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v 120 (322)
T PLN02986 56 ERLKLFKADLLEESSFEQAIEGCDAVFHTASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSV 120 (322)
T ss_pred CceEEEecCCCCcchHHHHHhCCCEEEEeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 467899999999999999999999999999985210 04567888875 54
No 40
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=95.42 E-value=0.015 Score=46.47 Aligned_cols=87 Identities=15% Similarity=0.164 Sum_probs=62.1
Q ss_pred ccccCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccc-cCCCCCCEEEEeCCCHHHHHHHhhc
Q psy1304 47 IGESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYR-ENLIDIPIIIADLKNESSILIMAKK 125 (184)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~-~~~~~v~~v~vDv~D~~sL~a~l~~ 125 (184)
|.+.++|-|.- ++.+|.+.... + +++..+++.... ....++++..+|+.|.+.+.++++.
T Consensus 3 I~GatG~iG~~----------------l~~~l~~~g~~--v-~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~ 63 (236)
T PF01370_consen 3 ITGATGFIGSA----------------LVRQLLKKGHE--V-IVLSRSSNSESFEEKKLNVEFVIGDLTDKEQLEKLLEK 63 (236)
T ss_dssp EETTTSHHHHH----------------HHHHHHHTTTE--E-EEEESCSTGGHHHHHHTTEEEEESETTSHHHHHHHHHH
T ss_pred EEccCCHHHHH----------------HHHHHHHcCCc--c-ccccccccccccccccceEEEEEeeccccccccccccc
Confidence 56778888877 77888876654 2 244433322211 0112788999999999999999999
Q ss_pred C--cEEEeccccccc-----c-----------chHHHHHHHHcCC
Q psy1304 126 C--RVILNCVGPYTW-----Y-----------GEAVVKACIEAKT 152 (184)
Q Consensus 126 ~--dVVIN~aGPf~~-----~-----------g~~VaeACieAGt 152 (184)
. |+|++++|+... . ...++++|.+.++
T Consensus 64 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~ 108 (236)
T PF01370_consen 64 ANIDVVIHLAAFSSNPESFEDPEEIIEANVQGTRNLLEAAREAGV 108 (236)
T ss_dssp HTESEEEEEBSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCceEEEEeeccccccccccccccccccccccccccccccccccc
Confidence 8 999999998521 0 1688999999998
No 41
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=95.35 E-value=0.059 Score=51.54 Aligned_cols=94 Identities=10% Similarity=0.137 Sum_probs=63.3
Q ss_pred ccccCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeeccc------cc-ccCCCCCCEEEEeCCCHHHH
Q psy1304 47 IGESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDC------LY-RENLIDIPIIIADLKNESSI 119 (184)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~------lg-~~~~~~v~~v~vDv~D~~sL 119 (184)
|.+.++|-|+. ++.+|.+..++ .+|....+.+. +. .....+++++.+|+.|++.+
T Consensus 11 VTGatGfIG~~----------------lv~~Ll~~g~~--~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~ 72 (668)
T PLN02260 11 ITGAAGFIASH----------------VANRLIRNYPD--YKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLV 72 (668)
T ss_pred EECCCcHHHHH----------------HHHHHHHhCCC--CEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHH
Confidence 46667788877 77888877666 55544333211 00 00124688999999999988
Q ss_pred HHHh--hcCcEEEecccccccc----------------chHHHHHHHHcC-C-CEeeCC
Q psy1304 120 LIMA--KKCRVILNCVGPYTWY----------------GEAVVKACIEAK-T-HHVDIT 158 (184)
Q Consensus 120 ~a~l--~~~dVVIN~aGPf~~~----------------g~~VaeACieAG-t-hYVDlt 158 (184)
..++ .++|+|||||+..... ...++++|.+.| + ++|-++
T Consensus 73 ~~~~~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~S 131 (668)
T PLN02260 73 NYLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVS 131 (668)
T ss_pred HHHHhhcCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEc
Confidence 8776 6799999999975321 146899999987 3 466544
No 42
>PRK05865 hypothetical protein; Provisional
Probab=95.34 E-value=0.098 Score=52.88 Aligned_cols=91 Identities=14% Similarity=0.059 Sum_probs=63.6
Q ss_pred ccccCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccccCCCCCCEEEEeCCCHHHHHHHhhcC
Q psy1304 47 IGESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRENLIDIPIIIADLKNESSILIMAKKC 126 (184)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~~~~~v~~v~vDv~D~~sL~a~l~~~ 126 (184)
|.+.++|-|+. ++.+|.... .++.+..|+.... ...++.++.+|+.|.+++.++++++
T Consensus 5 VTGATGfIGs~----------------La~~Ll~~G----~~Vv~l~R~~~~~--~~~~v~~v~gDL~D~~~l~~al~~v 62 (854)
T PRK05865 5 VTGASGVLGRG----------------LTARLLSQG----HEVVGIARHRPDS--WPSSADFIAADIRDATAVESAMTGA 62 (854)
T ss_pred EECCCCHHHHH----------------HHHHHHHCc----CEEEEEECCchhh--cccCceEEEeeCCCHHHHHHHHhCC
Confidence 45667777776 666776543 3454454543211 1135789999999999999999999
Q ss_pred cEEEeccccccc---c----chHHHHHHHHcCCC-EeeCCC
Q psy1304 127 RVILNCVGPYTW---Y----GEAVVKACIEAKTH-HVDITG 159 (184)
Q Consensus 127 dVVIN~aGPf~~---~----g~~VaeACieAGth-YVDltG 159 (184)
|+||||+++... . ..+++++|.+.|+. .|-++.
T Consensus 63 D~VVHlAa~~~~~~~vNv~GT~nLLeAa~~~gvkr~V~iSS 103 (854)
T PRK05865 63 DVVAHCAWVRGRNDHINIDGTANVLKAMAETGTGRIVFTSS 103 (854)
T ss_pred CEEEECCCcccchHHHHHHHHHHHHHHHHHcCCCeEEEECC
Confidence 999999986421 1 25789999999974 666554
No 43
>PRK09186 flagellin modification protein A; Provisional
Probab=95.33 E-value=0.032 Score=45.44 Aligned_cols=59 Identities=14% Similarity=0.090 Sum_probs=39.4
Q ss_pred hhhhhhhCCCCCceeEEeeeecccccc--------c-CCCCCCEEEEeCCCHHHHHHHhhc-------CcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYR--------E-NLIDIPIIIADLKNESSILIMAKK-------CRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~--------~-~~~~v~~v~vDv~D~~sL~a~l~~-------~dVVIN~aGPf 136 (184)
++..|++.. .++.+.+|+.+... . ....+.++++|+.|++++.+++++ .|+||||+|+.
T Consensus 20 ~a~~l~~~g----~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~id~vi~~A~~~ 94 (256)
T PRK09186 20 LVKAILEAG----GIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKYGKIDGAVNCAYPR 94 (256)
T ss_pred HHHHHHHCC----CEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHcCCccEEEECCccc
Confidence 455555443 56667776543211 0 112355779999999999999885 69999999864
No 44
>PRK06398 aldose dehydrogenase; Validated
Probab=95.26 E-value=0.038 Score=45.96 Aligned_cols=73 Identities=11% Similarity=0.188 Sum_probs=48.3
Q ss_pred ccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccccCCCCCCEEEEeCCCHHHHHHHhh-------
Q psy1304 52 PFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRENLIDIPIIIADLKNESSILIMAK------- 124 (184)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~~~~~v~~v~vDv~D~~sL~a~l~------- 124 (184)
.++||+.-|.|- .+|----++.+|++. + .++.+.+|+.... .++.++++|+.|+++++++++
T Consensus 3 ~l~gk~vlItGa---s~gIG~~ia~~l~~~--G--~~Vi~~~r~~~~~----~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 71 (258)
T PRK06398 3 GLKDKVAIVTGG---SQGIGKAVVNRLKEE--G--SNVINFDIKEPSY----NDVDYFKVDVSNKEQVIKGIDYVISKYG 71 (258)
T ss_pred CCCCCEEEEECC---CchHHHHHHHHHHHC--C--CeEEEEeCCcccc----CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 367777777661 122001134444443 3 5677777765432 367899999999999988886
Q ss_pred cCcEEEecccc
Q psy1304 125 KCRVILNCVGP 135 (184)
Q Consensus 125 ~~dVVIN~aGP 135 (184)
+.|++||++|.
T Consensus 72 ~id~li~~Ag~ 82 (258)
T PRK06398 72 RIDILVNNAGI 82 (258)
T ss_pred CCCEEEECCCC
Confidence 47999999984
No 45
>PLN02650 dihydroflavonol-4-reductase
Probab=95.25 E-value=0.055 Score=47.01 Aligned_cols=85 Identities=18% Similarity=0.207 Sum_probs=57.9
Q ss_pred ccccCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccc--------cC-CCCCCEEEEeCCCHH
Q psy1304 47 IGESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYR--------EN-LIDIPIIIADLKNES 117 (184)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~--------~~-~~~v~~v~vDv~D~~ 117 (184)
|-+.++|-|.. ++.+|++.. .+|.+..|+..... .. ..+++++..|+.|++
T Consensus 10 VTGatGfIGs~----------------l~~~L~~~G----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~ 69 (351)
T PLN02650 10 VTGASGFIGSW----------------LVMRLLERG----YTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEG 69 (351)
T ss_pred EeCCcHHHHHH----------------HHHHHHHCC----CEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChh
Confidence 46677787776 667777653 44554455432110 00 124678999999999
Q ss_pred HHHHHhhcCcEEEecccccccc--------------c-hHHHHHHHHcC
Q psy1304 118 SILIMAKKCRVILNCVGPYTWY--------------G-EAVVKACIEAK 151 (184)
Q Consensus 118 sL~a~l~~~dVVIN~aGPf~~~--------------g-~~VaeACieAG 151 (184)
++.++++++|.||||+++.... | ..++++|.+.+
T Consensus 70 ~~~~~~~~~d~ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~ 118 (351)
T PLN02650 70 SFDDAIRGCTGVFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAK 118 (351)
T ss_pred hHHHHHhCCCEEEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcC
Confidence 9999999999999999864211 0 46789999877
No 46
>PLN02240 UDP-glucose 4-epimerase
Probab=95.24 E-value=0.082 Score=45.43 Aligned_cols=54 Identities=7% Similarity=0.046 Sum_probs=41.3
Q ss_pred CCCCEEEEeCCCHHHHHHHhh--cCcEEEecccccccc----------------chHHHHHHHHcCCC-EeeC
Q psy1304 104 IDIPIIIADLKNESSILIMAK--KCRVILNCVGPYTWY----------------GEAVVKACIEAKTH-HVDI 157 (184)
Q Consensus 104 ~~v~~v~vDv~D~~sL~a~l~--~~dVVIN~aGPf~~~----------------g~~VaeACieAGth-YVDl 157 (184)
.++.++.+|+.|++++.++++ ++|.||||+|..... ...++++|.+.|+. +|-+
T Consensus 58 ~~~~~~~~D~~~~~~l~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ 130 (352)
T PLN02240 58 DNLVFHKVDLRDKEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFS 130 (352)
T ss_pred ccceEEecCcCCHHHHHHHHHhCCCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 357889999999999999987 689999999853210 14788999998864 5543
No 47
>PLN02253 xanthoxin dehydrogenase
Probab=95.12 E-value=0.021 Score=47.60 Aligned_cols=77 Identities=12% Similarity=0.106 Sum_probs=49.1
Q ss_pred CccccceeeecccccCCCCCCCchhhhhhhCC--CCCceeEEeeeeccccccc------CCCCCCEEEEeCCCHHHHHHH
Q psy1304 51 QPFRGQTLSVQDKIRPGRGSNPRPSAYKADAP--TSNLTRLGLLGARDCLYRE------NLIDIPIIIADLKNESSILIM 122 (184)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~--~~~~~~iaLAGrr~~lg~~------~~~~v~~v~vDv~D~~sL~a~ 122 (184)
..++||++-|-|- .+ -|..++++.. .+ .++.+.+|+++.... ...++.++++|+.|++++.++
T Consensus 14 ~~l~~k~~lItGa---s~----gIG~~la~~l~~~G--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 84 (280)
T PLN02253 14 QRLLGKVALVTGG---AT----GIGESIVRLFHKHG--AKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRA 84 (280)
T ss_pred cccCCCEEEEECC---Cc----hHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHH
Confidence 3456676666651 11 2444444222 23 677777775432110 113577999999999999998
Q ss_pred hh-------cCcEEEeccccc
Q psy1304 123 AK-------KCRVILNCVGPY 136 (184)
Q Consensus 123 l~-------~~dVVIN~aGPf 136 (184)
++ +.|+|||++|..
T Consensus 85 ~~~~~~~~g~id~li~~Ag~~ 105 (280)
T PLN02253 85 VDFTVDKFGTLDIMVNNAGLT 105 (280)
T ss_pred HHHHHHHhCCCCEEEECCCcC
Confidence 87 589999999853
No 48
>PRK07326 short chain dehydrogenase; Provisional
Probab=95.12 E-value=0.025 Score=45.56 Aligned_cols=60 Identities=10% Similarity=0.080 Sum_probs=42.2
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc---C---CCCCCEEEEeCCCHHHHHHHhh-------cCcEEEecccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE---N---LIDIPIIIADLKNESSILIMAK-------KCRVILNCVGPYT 137 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~---~---~~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGPf~ 137 (184)
++.+|++. + .++.+.+|+...... . ..++.++++|+.|++++.++++ ++|+|||++|++.
T Consensus 22 la~~l~~~--g--~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~ 94 (237)
T PRK07326 22 IAEALLAE--G--YKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGGLDVLIANAGVGH 94 (237)
T ss_pred HHHHHHHC--C--CEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence 55666643 4 567777775432110 0 0457789999999999998887 6899999999864
No 49
>PLN00016 RNA-binding protein; Provisional
Probab=95.09 E-value=0.039 Score=48.95 Aligned_cols=87 Identities=10% Similarity=-0.000 Sum_probs=57.8
Q ss_pred ccCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeeccccccc----------C--CCCCCEEEEeCCCH
Q psy1304 49 ESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRE----------N--LIDIPIIIADLKNE 116 (184)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~----------~--~~~v~~v~vDv~D~ 116 (184)
+.++|-|+. ++.+|.+.. -+|.+..|+...... . ...+++++.|+.|
T Consensus 63 GatG~iG~~----------------lv~~L~~~G----~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d- 121 (378)
T PLN00016 63 GGHAFIGFY----------------LAKELVKAG----HEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPAD- 121 (378)
T ss_pred CCceeEhHH----------------HHHHHHHCC----CEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHH-
Confidence 778888877 677777654 334444454321100 0 1247888888877
Q ss_pred HHHHHHh--hcCcEEEeccccccccchHHHHHHHHcCC-CEeeCC
Q psy1304 117 SSILIMA--KKCRVILNCVGPYTWYGEAVVKACIEAKT-HHVDIT 158 (184)
Q Consensus 117 ~sL~a~l--~~~dVVIN~aGPf~~~g~~VaeACieAGt-hYVDlt 158 (184)
+.+++ .++|+||+++|.....-.++++||.++|+ ++|-++
T Consensus 122 --~~~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~S 164 (378)
T PLN00016 122 --VKSKVAGAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCS 164 (378)
T ss_pred --HHhhhccCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 44444 57999999998765555899999999999 466543
No 50
>PRK05876 short chain dehydrogenase; Provisional
Probab=95.08 E-value=0.031 Score=47.31 Aligned_cols=77 Identities=16% Similarity=0.204 Sum_probs=49.3
Q ss_pred ccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeeccccccc-------CCCCCCEEEEeCCCHHHHHHHhh
Q psy1304 52 PFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRE-------NLIDIPIIIADLKNESSILIMAK 124 (184)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~-------~~~~v~~v~vDv~D~~sL~a~l~ 124 (184)
.|.||+.-|.|- +.|--..++..|++.. .++.+.+|+.....+ ...++.++.+|+.|++++.++++
T Consensus 3 ~~~~k~vlVTGa---s~gIG~ala~~La~~G----~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~ 75 (275)
T PRK05876 3 GFPGRGAVITGG---ASGIGLATGTEFARRG----ARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLAD 75 (275)
T ss_pred CcCCCEEEEeCC---CchHHHHHHHHHHHCC----CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHH
Confidence 377777777662 1221112555555543 567778776432110 11346788999999999998887
Q ss_pred c-------CcEEEecccc
Q psy1304 125 K-------CRVILNCVGP 135 (184)
Q Consensus 125 ~-------~dVVIN~aGP 135 (184)
. .|+|||++|.
T Consensus 76 ~~~~~~g~id~li~nAg~ 93 (275)
T PRK05876 76 EAFRLLGHVDVVFSNAGI 93 (275)
T ss_pred HHHHHcCCCCEEEECCCc
Confidence 5 5999999984
No 51
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=94.98 E-value=0.1 Score=43.79 Aligned_cols=81 Identities=11% Similarity=0.010 Sum_probs=50.2
Q ss_pred hhhhhhhCCCCCceeEEeeeecccccc-cCCCCCCEEEEeCCCHHHHHHHhh----cCcEEEecccccccc---------
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYR-ENLIDIPIIIADLKNESSILIMAK----KCRVILNCVGPYTWY--------- 139 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~-~~~~~v~~v~vDv~D~~sL~a~l~----~~dVVIN~aGPf~~~--------- 139 (184)
++.+|.+.... .+.+.+|++.... .... ...+..|++|++.++.+.+ ++|+||||||+....
T Consensus 14 l~~~L~~~g~~---~v~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~D~vvh~A~~~~~~~~~~~~~~~ 89 (314)
T TIGR02197 14 LVKALNERGIT---DILVVDNLRDGHKFLNLA-DLVIADYIDKEDFLDRLEKGAFGKIEAIFHQGACSDTTETDGEYMME 89 (314)
T ss_pred HHHHHHHcCCc---eEEEEecCCCchhhhhhh-heeeeccCcchhHHHHHHhhccCCCCEEEECccccCccccchHHHHH
Confidence 66777765431 2434444332211 0011 1346678888888888775 799999999864221
Q ss_pred -----chHHHHHHHHcCCCEeeCC
Q psy1304 140 -----GEAVVKACIEAKTHHVDIT 158 (184)
Q Consensus 140 -----g~~VaeACieAGthYVDlt 158 (184)
...++++|.+.+++.|-++
T Consensus 90 ~n~~~~~~ll~~~~~~~~~~v~~S 113 (314)
T TIGR02197 90 NNYQYSKRLLDWCAEKGIPFIYAS 113 (314)
T ss_pred HHHHHHHHHHHHHHHhCCcEEEEc
Confidence 1568999999998876544
No 52
>PRK06138 short chain dehydrogenase; Provisional
Probab=94.91 E-value=0.017 Score=46.81 Aligned_cols=59 Identities=10% Similarity=-0.012 Sum_probs=40.6
Q ss_pred hhhhhhhCCCCCceeEEeeeecccccccC------CCCCCEEEEeCCCHHHHHHHhh-------cCcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYREN------LIDIPIIIADLKNESSILIMAK-------KCRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~~------~~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGPf 136 (184)
++.+|++. + -++.+.+|+.+...+. ..++.++++|+.|++++.++++ +.|+||||+|..
T Consensus 21 la~~l~~~--G--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~vi~~ag~~ 92 (252)
T PRK06138 21 TAKLFARE--G--ARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARWGRLDVLVNNAGFG 92 (252)
T ss_pred HHHHHHHC--C--CeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 44445543 3 5677777765322110 1346789999999999998876 579999999964
No 53
>PRK06523 short chain dehydrogenase; Provisional
Probab=94.88 E-value=0.061 Score=44.12 Aligned_cols=75 Identities=15% Similarity=0.158 Sum_probs=49.9
Q ss_pred ccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccccCCCCCCEEEEeCCCHHHHHHHhh-------
Q psy1304 52 PFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRENLIDIPIIIADLKNESSILIMAK------- 124 (184)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~~~~~v~~v~vDv~D~~sL~a~l~------- 124 (184)
.++||++-|.|- .++---.++.+|++. + .++.+.+|+.... ...++.++++|+.|+++++++++
T Consensus 6 ~~~~k~vlItGa---s~gIG~~ia~~l~~~--G--~~v~~~~r~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 76 (260)
T PRK06523 6 ELAGKRALVTGG---TKGIGAATVARLLEA--G--ARVVTTARSRPDD--LPEGVEFVAADLTTAEGCAAVARAVLERLG 76 (260)
T ss_pred CCCCCEEEEECC---CCchhHHHHHHHHHC--C--CEEEEEeCChhhh--cCCceeEEecCCCCHHHHHHHHHHHHHHcC
Confidence 467787777762 122112255555544 3 6777887765432 22457899999999998887765
Q ss_pred cCcEEEecccc
Q psy1304 125 KCRVILNCVGP 135 (184)
Q Consensus 125 ~~dVVIN~aGP 135 (184)
+.|+|||++|.
T Consensus 77 ~id~vi~~ag~ 87 (260)
T PRK06523 77 GVDILVHVLGG 87 (260)
T ss_pred CCCEEEECCcc
Confidence 46999999994
No 54
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=94.87 E-value=0.055 Score=46.71 Aligned_cols=59 Identities=14% Similarity=0.216 Sum_probs=44.4
Q ss_pred HHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEeeCCC----ChHHHHHHHHHhHHHHHHcCCeee
Q psy1304 119 ILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITG----EPYFMEYMQYEYNTRAQESEVQKC 183 (184)
Q Consensus 119 L~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltG----E~~~~~~ii~~lhe~AkaaGV~Iv 183 (184)
+++++.++|+|+.|++|... ..+++.|+++|.|.+.++- +.++. .++.+.|++.|+.+.
T Consensus 55 ~~ell~~~DvVvi~a~~~~~--~~~~~~al~~Gk~Vvv~s~gAl~d~~~~----~~L~~aA~~~g~~l~ 117 (265)
T PRK13304 55 IDELVEDVDLVVECASVNAV--EEVVPKSLENGKDVIIMSVGALADKELF----LKLYKLAKENNCKIY 117 (265)
T ss_pred HHHHhcCCCEEEEcCChHHH--HHHHHHHHHcCCCEEEEchHHhcCHHHH----HHHHHHHHHcCCEEE
Confidence 55566899999999977554 5888999999999888653 33332 467788999997654
No 55
>PRK05867 short chain dehydrogenase; Provisional
Probab=94.80 E-value=0.028 Score=46.14 Aligned_cols=78 Identities=10% Similarity=0.121 Sum_probs=49.6
Q ss_pred cccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeeccccccc-------CCCCCCEEEEeCCCHHHHHHHhh-
Q psy1304 53 FRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRE-------NLIDIPIIIADLKNESSILIMAK- 124 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~-------~~~~v~~v~vDv~D~~sL~a~l~- 124 (184)
++||+.-|.|- ++|--.-++..|++. + .++.+.+|+.+..+. ...++.++.+|+.|++++.++++
T Consensus 7 ~~~k~vlVtGa---s~gIG~~ia~~l~~~--G--~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (253)
T PRK05867 7 LHGKRALITGA---STGIGKRVALAYVEA--G--AQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQ 79 (253)
T ss_pred CCCCEEEEECC---CchHHHHHHHHHHHC--C--CEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHH
Confidence 56777766661 122111244444444 3 578888876432110 11356788999999999998876
Q ss_pred ------cCcEEEecccccc
Q psy1304 125 ------KCRVILNCVGPYT 137 (184)
Q Consensus 125 ------~~dVVIN~aGPf~ 137 (184)
+.|++||++|.+.
T Consensus 80 ~~~~~g~id~lv~~ag~~~ 98 (253)
T PRK05867 80 VTAELGGIDIAVCNAGIIT 98 (253)
T ss_pred HHHHhCCCCEEEECCCCCC
Confidence 6899999999653
No 56
>PRK07024 short chain dehydrogenase; Provisional
Probab=94.80 E-value=0.023 Score=46.95 Aligned_cols=59 Identities=17% Similarity=0.235 Sum_probs=42.2
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc---C---CCCCCEEEEeCCCHHHHHHHhhc-------CcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE---N---LIDIPIIIADLKNESSILIMAKK-------CRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~---~---~~~v~~v~vDv~D~~sL~a~l~~-------~dVVIN~aGPf 136 (184)
++..|++. + .++.+.+|+.+...+ . ..++.++++|+.|++++.+++++ .|++||++|..
T Consensus 18 la~~l~~~--G--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id~lv~~ag~~ 89 (257)
T PRK07024 18 LAREYARQ--G--ATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGLPDVVIANAGIS 89 (257)
T ss_pred HHHHHHHC--C--CEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEECCCcC
Confidence 66677665 3 567788876532110 0 12678999999999999888765 69999999964
No 57
>PRK08264 short chain dehydrogenase; Validated
Probab=94.72 E-value=0.06 Score=43.47 Aligned_cols=59 Identities=8% Similarity=0.000 Sum_probs=42.7
Q ss_pred hhhhhhhCCCCCceeEEeeeecccccccCCCCCCEEEEeCCCHHHHHHHhhc---CcEEEecccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRENLIDIPIIIADLKNESSILIMAKK---CRVILNCVGP 135 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~~~~~v~~v~vDv~D~~sL~a~l~~---~dVVIN~aGP 135 (184)
++.+|++.... ++.+.+|+.....+...++.++.+|+.|++++.+++++ .|+|||++|.
T Consensus 22 la~~l~~~G~~---~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag~ 83 (238)
T PRK08264 22 FVEQLLARGAA---KVYAAARDPESVTDLGPRVVPLQLDVTDPASVAAAAEAASDVTILVNNAGI 83 (238)
T ss_pred HHHHHHHCCcc---cEEEEecChhhhhhcCCceEEEEecCCCHHHHHHHHHhcCCCCEEEECCCc
Confidence 66666655421 56667676543321224688999999999999998885 7999999998
No 58
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.72 E-value=0.016 Score=46.83 Aligned_cols=59 Identities=12% Similarity=0.070 Sum_probs=41.3
Q ss_pred hhhhhhhCCCCCceeEEeeeecccccccC------CCCCCEEEEeCCCHHHHHHHhhc-------CcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYREN------LIDIPIIIADLKNESSILIMAKK-------CRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~~------~~~v~~v~vDv~D~~sL~a~l~~-------~dVVIN~aGPf 136 (184)
++.+|++. + .++.+.+|+....... ..++.++++|+.|++++.+++++ .|+|||++|..
T Consensus 21 l~~~l~~~--G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 92 (251)
T PRK07231 21 IARRFAAE--G--ARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERFGSVDILVNNAGTT 92 (251)
T ss_pred HHHHHHHC--C--CEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 55556544 3 5677778865322111 12366999999999999998875 59999999863
No 59
>PRK05866 short chain dehydrogenase; Provisional
Probab=94.66 E-value=0.041 Score=47.21 Aligned_cols=79 Identities=13% Similarity=0.153 Sum_probs=50.9
Q ss_pred CccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeeccccccc-------CCCCCCEEEEeCCCHHHHHHHh
Q psy1304 51 QPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRE-------NLIDIPIIIADLKNESSILIMA 123 (184)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~-------~~~~v~~v~vDv~D~~sL~a~l 123 (184)
..++||++-|.|- ++|---.++..|++. + .+|.+.+|+.+...+ ...++.++.+|+.|++++.+++
T Consensus 36 ~~~~~k~vlItGa---sggIG~~la~~La~~--G--~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~ 108 (293)
T PRK05866 36 VDLTGKRILLTGA---SSGIGEAAAEQFARR--G--ATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALV 108 (293)
T ss_pred cCCCCCEEEEeCC---CcHHHHHHHHHHHHC--C--CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHH
Confidence 3467777777661 122111134444443 4 678888887543211 1134668999999999999998
Q ss_pred h-------cCcEEEeccccc
Q psy1304 124 K-------KCRVILNCVGPY 136 (184)
Q Consensus 124 ~-------~~dVVIN~aGPf 136 (184)
+ +.|+||||+|..
T Consensus 109 ~~~~~~~g~id~li~~AG~~ 128 (293)
T PRK05866 109 ADVEKRIGGVDILINNAGRS 128 (293)
T ss_pred HHHHHHcCCCCEEEECCCCC
Confidence 8 689999999854
No 60
>PRK05854 short chain dehydrogenase; Provisional
Probab=94.65 E-value=0.027 Score=48.75 Aligned_cols=78 Identities=14% Similarity=0.129 Sum_probs=50.9
Q ss_pred ccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccccC---------CCCCCEEEEeCCCHHHHHHH
Q psy1304 52 PFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYREN---------LIDIPIIIADLKNESSILIM 122 (184)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~~---------~~~v~~v~vDv~D~~sL~a~ 122 (184)
.++||+.-|.|- .+|----++.+|++. + .+|.+++|+.+...+. ..++.++.+|+.|.++++++
T Consensus 11 ~l~gk~~lITGa---s~GIG~~~a~~La~~--G--~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~ 83 (313)
T PRK05854 11 DLSGKRAVVTGA---SDGLGLGLARRLAAA--G--AEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAAL 83 (313)
T ss_pred ccCCCEEEEeCC---CChHHHHHHHHHHHC--C--CEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHH
Confidence 357777777662 122111144444443 3 6888888875432211 13577899999999999988
Q ss_pred hhc-------CcEEEeccccc
Q psy1304 123 AKK-------CRVILNCVGPY 136 (184)
Q Consensus 123 l~~-------~dVVIN~aGPf 136 (184)
++. .|++||++|.+
T Consensus 84 ~~~~~~~~~~iD~li~nAG~~ 104 (313)
T PRK05854 84 GEQLRAEGRPIHLLINNAGVM 104 (313)
T ss_pred HHHHHHhCCCccEEEECCccc
Confidence 764 79999999954
No 61
>PRK06196 oxidoreductase; Provisional
Probab=94.63 E-value=0.035 Score=47.69 Aligned_cols=79 Identities=19% Similarity=0.264 Sum_probs=50.8
Q ss_pred CccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeeccccccc---CCCCCCEEEEeCCCHHHHHHHhh---
Q psy1304 51 QPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRE---NLIDIPIIIADLKNESSILIMAK--- 124 (184)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~---~~~~v~~v~vDv~D~~sL~a~l~--- 124 (184)
..++||+.-|.|- .+|---.++.+|++. + .++.+.+|+.+...+ ....+.++.+|+.|.++++++++
T Consensus 22 ~~l~~k~vlITGa---sggIG~~~a~~L~~~--G--~~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~~~ 94 (315)
T PRK06196 22 HDLSGKTAIVTGG---YSGLGLETTRALAQA--G--AHVIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAERFL 94 (315)
T ss_pred CCCCCCEEEEeCC---CchHHHHHHHHHHHC--C--CEEEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHHHH
Confidence 3467777777661 122111144444443 3 577788887643321 12347899999999999988875
Q ss_pred ----cCcEEEeccccc
Q psy1304 125 ----KCRVILNCVGPY 136 (184)
Q Consensus 125 ----~~dVVIN~aGPf 136 (184)
+.|+|||++|.+
T Consensus 95 ~~~~~iD~li~nAg~~ 110 (315)
T PRK06196 95 DSGRRIDILINNAGVM 110 (315)
T ss_pred hcCCCCCEEEECCCCC
Confidence 479999999954
No 62
>PRK07478 short chain dehydrogenase; Provisional
Probab=94.57 E-value=0.039 Score=45.22 Aligned_cols=77 Identities=10% Similarity=0.145 Sum_probs=48.4
Q ss_pred cccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeeccccccc-------CCCCCCEEEEeCCCHHHHHHHhh-
Q psy1304 53 FRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRE-------NLIDIPIIIADLKNESSILIMAK- 124 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~-------~~~~v~~v~vDv~D~~sL~a~l~- 124 (184)
++||+.-|.|- ++|--.-++.+|++.. .++.+.+|+...... ...++.++.+|+.|+++++++++
T Consensus 4 ~~~k~~lItGa---s~giG~~ia~~l~~~G----~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 76 (254)
T PRK07478 4 LNGKVAIITGA---SSGIGRAAAKLFAREG----AKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVAL 76 (254)
T ss_pred CCCCEEEEeCC---CChHHHHHHHHHHHCC----CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 45666666551 1221112445555433 578888876532110 11356788999999999998887
Q ss_pred ------cCcEEEeccccc
Q psy1304 125 ------KCRVILNCVGPY 136 (184)
Q Consensus 125 ------~~dVVIN~aGPf 136 (184)
+.|++||++|..
T Consensus 77 ~~~~~~~id~li~~ag~~ 94 (254)
T PRK07478 77 AVERFGGLDIAFNNAGTL 94 (254)
T ss_pred HHHhcCCCCEEEECCCCC
Confidence 579999999853
No 63
>KOG1502|consensus
Probab=94.55 E-value=0.053 Score=49.35 Aligned_cols=48 Identities=23% Similarity=0.364 Sum_probs=43.2
Q ss_pred CCCCEEEEeCCCHHHHHHHhhcCcEEEeccccccccc---------------hHHHHHHHHcC
Q psy1304 104 IDIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYG---------------EAVVKACIEAK 151 (184)
Q Consensus 104 ~~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~g---------------~~VaeACieAG 151 (184)
.++..+..|+.|+.++..++++||.|+++|-|+.... .+|++||.++.
T Consensus 57 ~~l~l~~aDL~d~~sf~~ai~gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~ 119 (327)
T KOG1502|consen 57 ERLKLFKADLLDEGSFDKAIDGCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTK 119 (327)
T ss_pred ccceEEeccccccchHHHHHhCCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccC
Confidence 4588999999999999999999999999999986533 58999999999
No 64
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=94.54 E-value=0.032 Score=45.53 Aligned_cols=59 Identities=12% Similarity=-0.008 Sum_probs=40.7
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc-------CCCCCCEEEEeCCCHHHHHHHhhc-------CcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE-------NLIDIPIIIADLKNESSILIMAKK-------CRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~-------~~~~v~~v~vDv~D~~sL~a~l~~-------~dVVIN~aGPf 136 (184)
++.+|++.. .+|.+.+|++....+ ...++.++++|+.|++++.+++++ .|+||||+|..
T Consensus 23 la~~l~~~G----~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 95 (262)
T PRK13394 23 IALELARAG----AAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFGSVDILVSNAGIQ 95 (262)
T ss_pred HHHHHHHCC----CeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCccC
Confidence 556666554 456677776532110 113467899999999999988775 79999999964
No 65
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=94.51 E-value=0.064 Score=44.26 Aligned_cols=73 Identities=8% Similarity=0.037 Sum_probs=47.8
Q ss_pred cccceeeecccccCCCCCCCchhhhhhhCC--CCCceeEEeeeecccccccCCCCCCEEEEeCCCHHHHHHHhhc-----
Q psy1304 53 FRGQTLSVQDKIRPGRGSNPRPSAYKADAP--TSNLTRLGLLGARDCLYRENLIDIPIIIADLKNESSILIMAKK----- 125 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~r~~~~La~~~--~~~~~~iaLAGrr~~lg~~~~~~v~~v~vDv~D~~sL~a~l~~----- 125 (184)
+.||+.-|-| -.+| |-.++++.. .+ .++.+.+++.... ...++.++++|+.|+++++++++.
T Consensus 7 l~~k~vlItG---~s~g----IG~~la~~l~~~G--~~v~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 75 (266)
T PRK06171 7 LQGKIIIVTG---GSSG----IGLAIVKELLANG--ANVVNADIHGGDG--QHENYQFVPTDVSSAEEVNHTVAEIIEKF 75 (266)
T ss_pred CCCCEEEEeC---CCCh----HHHHHHHHHHHCC--CEEEEEeCCcccc--ccCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 5566666655 1112 444444221 23 6777877765432 224677899999999999988774
Q ss_pred --CcEEEeccccc
Q psy1304 126 --CRVILNCVGPY 136 (184)
Q Consensus 126 --~dVVIN~aGPf 136 (184)
.|+||||+|..
T Consensus 76 g~id~li~~Ag~~ 88 (266)
T PRK06171 76 GRIDGLVNNAGIN 88 (266)
T ss_pred CCCCEEEECCccc
Confidence 69999999953
No 66
>PRK08265 short chain dehydrogenase; Provisional
Probab=94.48 E-value=0.036 Score=46.08 Aligned_cols=77 Identities=12% Similarity=0.094 Sum_probs=49.0
Q ss_pred cccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeeccccccc----CCCCCCEEEEeCCCHHHHHHHhhc---
Q psy1304 53 FRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRE----NLIDIPIIIADLKNESSILIMAKK--- 125 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~----~~~~v~~v~vDv~D~~sL~a~l~~--- 125 (184)
++||+.-|.|- .++---.++.+|++. + .++.+.+|+.+.... ...++.++++|+.|++++.++++.
T Consensus 4 ~~~k~vlItGa---s~gIG~~ia~~l~~~--G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 76 (261)
T PRK08265 4 LAGKVAIVTGG---ATLIGAAVARALVAA--G--ARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVA 76 (261)
T ss_pred CCCCEEEEECC---CChHHHHHHHHHHHC--C--CEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHH
Confidence 45666666551 112111255556554 3 578888887542111 114577899999999999888874
Q ss_pred ----CcEEEeccccc
Q psy1304 126 ----CRVILNCVGPY 136 (184)
Q Consensus 126 ----~dVVIN~aGPf 136 (184)
.|++||++|.+
T Consensus 77 ~~g~id~lv~~ag~~ 91 (261)
T PRK08265 77 RFGRVDILVNLACTY 91 (261)
T ss_pred HhCCCCEEEECCCCC
Confidence 69999999964
No 67
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=94.47 E-value=0.056 Score=46.52 Aligned_cols=59 Identities=12% Similarity=-0.025 Sum_probs=42.1
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc-------CCCCCCEEEEeCCCHHHHHHHhhc-------CcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE-------NLIDIPIIIADLKNESSILIMAKK-------CRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~-------~~~~v~~v~vDv~D~~sL~a~l~~-------~dVVIN~aGPf 136 (184)
++.+|++.. .+|.+.+|+.+...+ ...++.++.+|+.|.+++.++++. .|+|||++|.+
T Consensus 22 ~a~~L~~~G----~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~iD~li~nAg~~ 94 (322)
T PRK07453 22 AAKALAKRG----WHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALGKPLDALVCNAAVY 94 (322)
T ss_pred HHHHHHHCC----CEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhCCCccEEEECCccc
Confidence 555666543 567777876543211 113577899999999999998875 89999999954
No 68
>PRK08309 short chain dehydrogenase; Provisional
Probab=94.47 E-value=0.12 Score=42.38 Aligned_cols=83 Identities=11% Similarity=0.184 Sum_probs=60.1
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc------CCCCCCEEEEeCCCHHHHHHHhhc-------CcEEEeccccccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE------NLIDIPIIIADLKNESSILIMAKK-------CRVILNCVGPYTWYG 140 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~------~~~~v~~v~vDv~D~~sL~a~l~~-------~dVVIN~aGPf~~~g 140 (184)
++..|++.. .++.+.+|+.+.... ...++.++.+|++|++++.+++++ .|++++.+=.. ..
T Consensus 15 la~~L~~~G----~~V~v~~R~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~id~lv~~vh~~--~~ 88 (177)
T PRK08309 15 VSLWLCEKG----FHVSVIARREVKLENVKRESTTPESITPLPLDYHDDDALKLAIKSTIEKNGPFDLAVAWIHSS--AK 88 (177)
T ss_pred HHHHHHHCc----CEEEEEECCHHHHHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCeEEEEecccc--ch
Confidence 566777654 456666776432111 124577888999999999988874 56888887322 34
Q ss_pred hHHHHHHHHcCCC-----EeeCCCChH
Q psy1304 141 EAVVKACIEAKTH-----HVDITGEPY 162 (184)
Q Consensus 141 ~~VaeACieAGth-----YVDltGE~~ 162 (184)
..++++|.+.|++ ++++.|...
T Consensus 89 ~~~~~~~~~~gv~~~~~~~~h~~gs~~ 115 (177)
T PRK08309 89 DALSVVCRELDGSSETYRLFHVLGSAA 115 (177)
T ss_pred hhHHHHHHHHccCCCCceEEEEeCCcC
Confidence 7999999999999 999999866
No 69
>PRK05884 short chain dehydrogenase; Provisional
Probab=94.45 E-value=0.031 Score=45.80 Aligned_cols=59 Identities=19% Similarity=0.197 Sum_probs=40.4
Q ss_pred hhhhhhhCCCCCceeEEeeeecccccccC--CCCCCEEEEeCCCHHHHHHHhh----cCcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYREN--LIDIPIIIADLKNESSILIMAK----KCRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~~--~~~v~~v~vDv~D~~sL~a~l~----~~dVVIN~aGPf 136 (184)
++..|++. + .++.+.+|+.+..... ..+..++++|+.|+++++++++ ..|++||++||.
T Consensus 16 ia~~l~~~--g--~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~id~lv~~ag~~ 80 (223)
T PRK05884 16 IAEGFRND--G--HKVTLVGARRDDLEVAAKELDVDAIVCDNTDPASLEEARGLFPHHLDTIVNVPAPS 80 (223)
T ss_pred HHHHHHHC--C--CEEEEEeCCHHHHHHHHHhccCcEEecCCCCHHHHHHHHHHHhhcCcEEEECCCcc
Confidence 44444443 3 5777777765432111 1246789999999999998886 479999999864
No 70
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=94.42 E-value=0.093 Score=50.50 Aligned_cols=55 Identities=20% Similarity=0.237 Sum_probs=41.8
Q ss_pred CCCCEEEEeCCCHHH-HHHHhhcCcEEEeccccccc----------------cchHHHHHHHHcCCCEeeCC
Q psy1304 104 IDIPIIIADLKNESS-ILIMAKKCRVILNCVGPYTW----------------YGEAVVKACIEAKTHHVDIT 158 (184)
Q Consensus 104 ~~v~~v~vDv~D~~s-L~a~l~~~dVVIN~aGPf~~----------------~g~~VaeACieAGthYVDlt 158 (184)
.+++++..|+.|..+ +.++++++|+|||||+-... ....+++||.++|.++|-++
T Consensus 360 ~~~~~~~gDl~d~~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~~~~V~~S 431 (660)
T PRK08125 360 PRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYNKRIIFPS 431 (660)
T ss_pred CceEEEeccccCcHHHHHHHhcCCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcCCeEEEEc
Confidence 357889999998665 67888999999999973210 01578999999998877544
No 71
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=94.35 E-value=0.064 Score=45.78 Aligned_cols=47 Identities=19% Similarity=0.394 Sum_probs=37.7
Q ss_pred CCCCEEEEeCCCHHHHHHHhhcCcEEEecccccccc----------------chHHHHHHHHc
Q psy1304 104 IDIPIIIADLKNESSILIMAKKCRVILNCVGPYTWY----------------GEAVVKACIEA 150 (184)
Q Consensus 104 ~~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~----------------g~~VaeACieA 150 (184)
.+++++++|+.|++++.++++++|+||||||+.... ...++++|.+.
T Consensus 56 ~~~~~~~~D~~d~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~ 118 (325)
T PLN02989 56 ERLKLFKADLLDEGSFELAIDGCETVFHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKV 118 (325)
T ss_pred CceEEEeCCCCCchHHHHHHcCCCEEEEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHc
Confidence 357788999999999999999999999999974211 04677888875
No 72
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=94.35 E-value=0.034 Score=48.04 Aligned_cols=50 Identities=18% Similarity=0.300 Sum_probs=33.8
Q ss_pred EEeCCCHHHHHHHhhc--CcEEEecccccccc----------------chHHHHHHHHcCCCEeeCCC
Q psy1304 110 IADLKNESSILIMAKK--CRVILNCVGPYTWY----------------GEAVVKACIEAKTHHVDITG 159 (184)
Q Consensus 110 ~vDv~D~~sL~a~l~~--~dVVIN~aGPf~~~----------------g~~VaeACieAGthYVDltG 159 (184)
.+|+.|.+++.++++. .|+||||+|--... -..++++|.+.|+++|.++-
T Consensus 34 ~~dl~d~~~~~~~~~~~~pd~Vin~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~ST 101 (286)
T PF04321_consen 34 DLDLTDPEAVAKLLEAFKPDVVINCAAYTNVDACEKNPEEAYAINVDATKNLAEACKERGARLIHIST 101 (286)
T ss_dssp CS-TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEE
T ss_pred hcCCCCHHHHHHHHHHhCCCeEeccceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEeec
Confidence 6789999999999886 89999999632100 15889999999999888763
No 73
>PRK08267 short chain dehydrogenase; Provisional
Probab=94.30 E-value=0.047 Score=44.93 Aligned_cols=59 Identities=12% Similarity=0.022 Sum_probs=42.0
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc---C--CCCCCEEEEeCCCHHHHHHHhhc--------CcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE---N--LIDIPIIIADLKNESSILIMAKK--------CRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~---~--~~~v~~v~vDv~D~~sL~a~l~~--------~dVVIN~aGPf 136 (184)
++.+|++.. .++.+.+|+.....+ . ..++.++++|+.|.+++.+++++ .|+||||+|..
T Consensus 17 la~~l~~~G----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~vi~~ag~~ 88 (260)
T PRK08267 17 TALLFAAEG----WRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLDVLFNNAGIL 88 (260)
T ss_pred HHHHHHHCC----CeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCEEEECCCCC
Confidence 666776643 567777776542211 1 14688999999999999988764 49999999964
No 74
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.21 E-value=0.055 Score=45.09 Aligned_cols=81 Identities=11% Similarity=0.022 Sum_probs=49.4
Q ss_pred CccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccc------cCCCCCCEEEEeCCCHHHHHHHhh
Q psy1304 51 QPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYR------ENLIDIPIIIADLKNESSILIMAK 124 (184)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~------~~~~~v~~v~vDv~D~~sL~a~l~ 124 (184)
..++||+.-|.|--+ |+|----++..|++. + .++.+.+|+++..+ .......++++|+.|+++++++++
T Consensus 6 ~~~~~k~~lItGas~-g~GIG~a~a~~la~~--G--~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 80 (258)
T PRK07533 6 LPLAGKRGLVVGIAN-EQSIAWGCARAFRAL--G--AELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFA 80 (258)
T ss_pred cccCCCEEEEECCCC-CCcHHHHHHHHHHHc--C--CEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHH
Confidence 346788887777221 012001144444443 3 67888887643110 111334578999999999988765
Q ss_pred c-------CcEEEeccccc
Q psy1304 125 K-------CRVILNCVGPY 136 (184)
Q Consensus 125 ~-------~dVVIN~aGPf 136 (184)
. .|++||++|.+
T Consensus 81 ~~~~~~g~ld~lv~nAg~~ 99 (258)
T PRK07533 81 RIAEEWGRLDFLLHSIAFA 99 (258)
T ss_pred HHHHHcCCCCEEEEcCccC
Confidence 3 69999999854
No 75
>PRK12320 hypothetical protein; Provisional
Probab=94.17 E-value=0.12 Score=51.16 Aligned_cols=90 Identities=11% Similarity=0.027 Sum_probs=61.5
Q ss_pred ccccCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccccCCCCCCEEEEeCCCHHHHHHHhhcC
Q psy1304 47 IGESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRENLIDIPIIIADLKNESSILIMAKKC 126 (184)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~~~~~v~~v~vDv~D~~sL~a~l~~~ 126 (184)
|.+.++|-|+. ++.+|.+.. .+|....++.... ...++++++.|+.|+. +.+++.++
T Consensus 5 VTGAaGFIGs~----------------La~~Ll~~G----~~Vi~ldr~~~~~--~~~~ve~v~~Dl~d~~-l~~al~~~ 61 (699)
T PRK12320 5 VTDATGAVGRS----------------VTRQLIAAG----HTVSGIAQHPHDA--LDPRVDYVCASLRNPV-LQELAGEA 61 (699)
T ss_pred EECCCCHHHHH----------------HHHHHHhCC----CEEEEEeCChhhc--ccCCceEEEccCCCHH-HHHHhcCC
Confidence 46677888877 566666543 2343333433221 1246889999999984 88889999
Q ss_pred cEEEecccccccc--------chHHHHHHHHcCCCEeeCCC
Q psy1304 127 RVILNCVGPYTWY--------GEAVVKACIEAKTHHVDITG 159 (184)
Q Consensus 127 dVVIN~aGPf~~~--------g~~VaeACieAGthYVDltG 159 (184)
|+||||+++.... ..+++++|.++|+..|-+++
T Consensus 62 D~VIHLAa~~~~~~~~vNv~Gt~nLleAA~~~GvRiV~~SS 102 (699)
T PRK12320 62 DAVIHLAPVDTSAPGGVGITGLAHVANAAARAGARLLFVSQ 102 (699)
T ss_pred CEEEEcCccCccchhhHHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 9999999854211 25789999999998776553
No 76
>PRK12367 short chain dehydrogenase; Provisional
Probab=94.16 E-value=0.096 Score=44.15 Aligned_cols=50 Identities=12% Similarity=-0.081 Sum_probs=35.3
Q ss_pred eeEEeeeecc-cccc-cCCCCCCEEEEeCCCHHHHHHHhhcCcEEEeccccc
Q psy1304 87 TRLGLLGARD-CLYR-ENLIDIPIIIADLKNESSILIMAKKCRVILNCVGPY 136 (184)
Q Consensus 87 ~~iaLAGrr~-~lg~-~~~~~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf 136 (184)
.++.+.+|+. .... .......++.+|+.|.+++.+.+.+.|++||++|..
T Consensus 39 ~~Vi~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~iDilVnnAG~~ 90 (245)
T PRK12367 39 AKVIGLTHSKINNSESNDESPNEWIKWECGKEESLDKQLASLDVLILNHGIN 90 (245)
T ss_pred CEEEEEECCchhhhhhhccCCCeEEEeeCCCHHHHHHhcCCCCEEEECCccC
Confidence 5666666654 1111 011123578999999999999999999999999853
No 77
>PRK06172 short chain dehydrogenase; Provisional
Probab=94.10 E-value=0.038 Score=45.17 Aligned_cols=77 Identities=12% Similarity=0.113 Sum_probs=49.2
Q ss_pred cccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccc-------cCCCCCCEEEEeCCCHHHHHHHhhc
Q psy1304 53 FRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYR-------ENLIDIPIIIADLKNESSILIMAKK 125 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~-------~~~~~v~~v~vDv~D~~sL~a~l~~ 125 (184)
++||+.-|.|- .++---.++.+|++. + .++.+.+|+.+... ....++.++.+|+.|++++.+++++
T Consensus 5 l~~k~ilItGa---s~~iG~~ia~~l~~~--G--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~ 77 (253)
T PRK06172 5 FSGKVALVTGG---AAGIGRATALAFARE--G--AKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQ 77 (253)
T ss_pred CCCCEEEEeCC---CchHHHHHHHHHHHc--C--CEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 56777776661 122111244555544 3 56778877653211 0114578899999999999998875
Q ss_pred C-------cEEEeccccc
Q psy1304 126 C-------RVILNCVGPY 136 (184)
Q Consensus 126 ~-------dVVIN~aGPf 136 (184)
+ |++||++|..
T Consensus 78 ~~~~~g~id~li~~ag~~ 95 (253)
T PRK06172 78 TIAAYGRLDYAFNNAGIE 95 (253)
T ss_pred HHHHhCCCCEEEECCCCC
Confidence 4 9999999854
No 78
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=94.08 E-value=0.15 Score=38.09 Aligned_cols=62 Identities=15% Similarity=0.140 Sum_probs=42.0
Q ss_pred HHHHhh--cCcEEEeccccccccchHHHHHHHHcCCCEeeCCCChHHHHHHHHHhHHHHHHcCCee
Q psy1304 119 ILIMAK--KCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVQK 182 (184)
Q Consensus 119 L~a~l~--~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltGE~~~~~~ii~~lhe~AkaaGV~I 182 (184)
+++++. +.|+||.|.++ ......++.+++.|+|.|=.+=..-.-.....++.+.|++.|+.+
T Consensus 51 ~~~~~~~~~~dvvVE~t~~--~~~~~~~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~ 114 (117)
T PF03447_consen 51 LEELIDDPDIDVVVECTSS--EAVAEYYEKALERGKHVVTANKGALADEALYEELREAARKNGVRI 114 (117)
T ss_dssp HHHHHTHTT-SEEEE-SSC--HHHHHHHHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EE
T ss_pred HHHHhcCcCCCEEEECCCc--hHHHHHHHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEE
Confidence 456666 89999999764 444678899999999998765433221133468899999999876
No 79
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=94.08 E-value=0.12 Score=44.47 Aligned_cols=51 Identities=22% Similarity=0.195 Sum_probs=40.1
Q ss_pred EEEeCCCHHHHHHHhh--cCcEEEecccccccc----------------chHHHHHHHHcCCCEeeCCC
Q psy1304 109 IIADLKNESSILIMAK--KCRVILNCVGPYTWY----------------GEAVVKACIEAKTHHVDITG 159 (184)
Q Consensus 109 v~vDv~D~~sL~a~l~--~~dVVIN~aGPf~~~----------------g~~VaeACieAGthYVDltG 159 (184)
+..|+.|++++.++++ ++|+|||||+..... -..++++|.+.|+.+|-++.
T Consensus 36 ~~~Dl~d~~~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~~~v~~Ss 104 (299)
T PRK09987 36 YCGDFSNPEGVAETVRKIRPDVIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVGAWVVHYST 104 (299)
T ss_pred ccCCCCCHHHHHHHHHhcCCCEEEECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 4569999999999998 489999999865321 14689999999988776553
No 80
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=94.08 E-value=0.14 Score=49.99 Aligned_cols=109 Identities=17% Similarity=0.231 Sum_probs=78.6
Q ss_pred hhhhccccccccCccccceeeecccccCCCCC-CCchhhhhhhCCCCCceeEEeeeeccc--------cccc-CCCCCCE
Q psy1304 39 RKQRKEDRIGESQPFRGQTLSVQDKIRPGRGS-NPRPSAYKADAPTSNLTRLGLLGARDC--------LYRE-NLIDIPI 108 (184)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~r~~~~La~~~~~~~~~iaLAGrr~~--------lg~~-~~~~v~~ 108 (184)
|+.=+-|.=.-+.-|+||++-|.| |-|| -.++...+++..|. +|-+-++.+- +... ...+..+
T Consensus 234 R~pV~~d~~~i~~~~~gK~vLVTG----agGSiGsel~~qil~~~p~---~i~l~~~~E~~~~~i~~el~~~~~~~~~~~ 306 (588)
T COG1086 234 RPPVALDTELIGAMLTGKTVLVTG----GGGSIGSELCRQILKFNPK---EIILFSRDEYKLYLIDMELREKFPELKLRF 306 (588)
T ss_pred CCCCCCCHHHHHhHcCCCEEEEeC----CCCcHHHHHHHHHHhcCCC---EEEEecCchHHHHHHHHHHHhhCCCcceEE
Confidence 444444544556779999999998 4444 34455666666665 7888887651 2110 1356779
Q ss_pred EEEeCCCHHHHHHHhhc--CcEEEeccc----cccccc------------hHHHHHHHHcCCCE
Q psy1304 109 IIADLKNESSILIMAKK--CRVILNCVG----PYTWYG------------EAVVKACIEAKTHH 154 (184)
Q Consensus 109 v~vDv~D~~sL~a~l~~--~dVVIN~aG----Pf~~~g------------~~VaeACieAGthY 154 (184)
..+|+.|.+.+..++++ +|+|.|+|- |..+++ .++++||+++|+..
T Consensus 307 ~igdVrD~~~~~~~~~~~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~ 370 (588)
T COG1086 307 YIGDVRDRDRVERAMEGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKK 370 (588)
T ss_pred EecccccHHHHHHHHhcCCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCE
Confidence 99999999999999999 999999985 222332 79999999999994
No 81
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=94.05 E-value=0.12 Score=43.09 Aligned_cols=77 Identities=17% Similarity=0.162 Sum_probs=46.7
Q ss_pred cccceeeecccccCCCCCCCchhhhhhhCC--CCCceeEEeeeeccccc------c---cCCCCCCEEEEeCCCHHHHHH
Q psy1304 53 FRGQTLSVQDKIRPGRGSNPRPSAYKADAP--TSNLTRLGLLGARDCLY------R---ENLIDIPIIIADLKNESSILI 121 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~r~~~~La~~~--~~~~~~iaLAGrr~~lg------~---~~~~~v~~v~vDv~D~~sL~a 121 (184)
++||+.-|.|- +++..|-.++|+.. .+ .++.+..++++.+ . +......++++|+.|++++++
T Consensus 4 l~~k~~lItGa-----s~~~GIG~aia~~la~~G--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~ 76 (258)
T PRK07370 4 LTGKKALVTGI-----ANNRSIAWGIAQQLHAAG--AELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEE 76 (258)
T ss_pred cCCcEEEEeCC-----CCCCchHHHHHHHHHHCC--CEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHH
Confidence 46777777661 11233555555322 33 5677665432211 0 011345688999999999998
Q ss_pred Hhhc-------CcEEEeccccc
Q psy1304 122 MAKK-------CRVILNCVGPY 136 (184)
Q Consensus 122 ~l~~-------~dVVIN~aGPf 136 (184)
+++. .|++||++|..
T Consensus 77 ~~~~~~~~~g~iD~lv~nag~~ 98 (258)
T PRK07370 77 TFETIKQKWGKLDILVHCLAFA 98 (258)
T ss_pred HHHHHHHHcCCCCEEEEccccc
Confidence 8763 69999999843
No 82
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=94.05 E-value=0.23 Score=41.22 Aligned_cols=76 Identities=11% Similarity=0.034 Sum_probs=48.7
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc---CCCCCCEEEEeCCC-HHHHHHHh-hcCcEEEecccccccc---------
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE---NLIDIPIIIADLKN-ESSILIMA-KKCRVILNCVGPYTWY--------- 139 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~---~~~~v~~v~vDv~D-~~sL~a~l-~~~dVVIN~aGPf~~~--------- 139 (184)
++.+|+... -+|....|+...... ...+++++++|+.| .+++...+ .++|+||+++|+-...
T Consensus 33 l~~~L~~~g----~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~~g~~~~~~~~~~~~~n 108 (251)
T PLN00141 33 IVEQLLAKG----FAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICATGFRRSFDPFAPWKVD 108 (251)
T ss_pred HHHHHHhCC----CEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEECCCCCcCCCCCCceeee
Confidence 556666532 344444454332111 11358899999988 57787888 6899999998853210
Q ss_pred ---chHHHHHHHHcCCC
Q psy1304 140 ---GEAVVKACIEAKTH 153 (184)
Q Consensus 140 ---g~~VaeACieAGth 153 (184)
...++++|.+.|+.
T Consensus 109 ~~~~~~ll~a~~~~~~~ 125 (251)
T PLN00141 109 NFGTVNLVEACRKAGVT 125 (251)
T ss_pred hHHHHHHHHHHHHcCCC
Confidence 26788999988854
No 83
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.04 E-value=0.087 Score=43.32 Aligned_cols=77 Identities=16% Similarity=0.180 Sum_probs=45.8
Q ss_pred cccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccccCC--CCCCEEEEeCCCHHHHHHHhh------
Q psy1304 53 FRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRENL--IDIPIIIADLKNESSILIMAK------ 124 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~~~--~~v~~v~vDv~D~~sL~a~l~------ 124 (184)
++||+.-|.|- .++----++.+|++.. .++.+..++........ .++.++.+|+.|++++.++++
T Consensus 5 l~~k~~lItGa---s~gIG~~~a~~l~~~G----~~v~~~~~~~~~~~~~l~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 77 (255)
T PRK06463 5 FKGKVALITGG---TRGIGRAIAEAFLREG----AKVAVLYNSAENEAKELREKGVFTIKCDVGNRDQVKKSKEVVEKEF 77 (255)
T ss_pred cCCCEEEEeCC---CChHHHHHHHHHHHCC----CEEEEEeCCcHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHHHc
Confidence 45666655552 1110011455555543 45666655432111011 247789999999999999887
Q ss_pred -cCcEEEeccccc
Q psy1304 125 -KCRVILNCVGPY 136 (184)
Q Consensus 125 -~~dVVIN~aGPf 136 (184)
+.|+||||+|..
T Consensus 78 ~~id~li~~ag~~ 90 (255)
T PRK06463 78 GRVDVLVNNAGIM 90 (255)
T ss_pred CCCCEEEECCCcC
Confidence 469999999864
No 84
>PRK08643 acetoin reductase; Validated
Probab=94.00 E-value=0.062 Score=44.00 Aligned_cols=59 Identities=8% Similarity=0.115 Sum_probs=41.1
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc-------CCCCCCEEEEeCCCHHHHHHHhh-------cCcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE-------NLIDIPIIIADLKNESSILIMAK-------KCRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~-------~~~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGPf 136 (184)
++.+|++.. .++.+.+|+...... ...++.++++|+.|++++.++++ +.|+||||+|.+
T Consensus 18 la~~l~~~G----~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 90 (256)
T PRK08643 18 IAKRLVEDG----FKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDLNVVVNNAGVA 90 (256)
T ss_pred HHHHHHHCC----CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 666776553 567777775432110 11356789999999999988887 469999999864
No 85
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.99 E-value=0.051 Score=44.06 Aligned_cols=60 Identities=15% Similarity=0.203 Sum_probs=41.4
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc-------CCCCCCEEEEeCCCHHHHHHHhh-------cCcEEEecccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE-------NLIDIPIIIADLKNESSILIMAK-------KCRVILNCVGPYT 137 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~-------~~~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGPf~ 137 (184)
++.+|++ .+ .++.+.+|+.....+ ...++.++.+|+.|++++.++++ +.|+|||++|+..
T Consensus 23 l~~~L~~--~G--~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~ 96 (239)
T PRK07666 23 VAIALAK--EG--VNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELGSIDILINNAGISK 96 (239)
T ss_pred HHHHHHH--CC--CEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcCCccEEEEcCcccc
Confidence 4444443 34 577788776432110 11357789999999999999887 6899999998753
No 86
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=93.97 E-value=0.097 Score=50.94 Aligned_cols=107 Identities=10% Similarity=0.039 Sum_probs=67.2
Q ss_pred ceEEEEecceeeeeeechhhhhccccccccCccccceeeecccccCCCCCCCchhhhhhhC--CCCCceeEEeeeecccc
Q psy1304 21 GEYLIFSKGTVTAKVLSSRKQRKEDRIGESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADA--PTSNLTRLGLLGARDCL 98 (184)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~--~~~~~~~iaLAGrr~~l 98 (184)
|.|..++..-.-.+=--+.+|.|-.+.....+|+||+.-|-|- +.-|-.++++. -.+ .++.+..|+...
T Consensus 380 ~~~~~~~~~~~f~~eyw~~e~~kl~~~~~~~~l~gkvvLVTGa-------sggIG~aiA~~La~~G--a~Vvi~~r~~~~ 450 (676)
T TIGR02632 380 SEYVSLPEQEAFDIEYWPLEEAKLRRMPKEKTLARRVAFVTGG-------AGGIGRETARRLAAEG--AHVVLADLNLEA 450 (676)
T ss_pred cceecCchhhccchhhhhhhHHhhccCCCCcCCCCCEEEEeCC-------CcHHHHHHHHHHHhCC--CEEEEEeCCHHH
Confidence 4454444444433333356777776665556788999888772 12244454421 124 678787776432
Q ss_pred ccc---------CCCCCCEEEEeCCCHHHHHHHhh-------cCcEEEeccccc
Q psy1304 99 YRE---------NLIDIPIIIADLKNESSILIMAK-------KCRVILNCVGPY 136 (184)
Q Consensus 99 g~~---------~~~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGPf 136 (184)
... ....+..+++|+.|++++.++++ +.|+|||++|..
T Consensus 451 ~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~~g~iDilV~nAG~~ 504 (676)
T TIGR02632 451 AEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALAYGGVDIVVNNAGIA 504 (676)
T ss_pred HHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHhcCCCcEEEECCCCC
Confidence 110 01245688999999999999887 579999999964
No 87
>PRK07890 short chain dehydrogenase; Provisional
Probab=93.95 E-value=0.061 Score=43.86 Aligned_cols=59 Identities=12% Similarity=-0.001 Sum_probs=41.0
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc-------CCCCCCEEEEeCCCHHHHHHHhh-------cCcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE-------NLIDIPIIIADLKNESSILIMAK-------KCRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~-------~~~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGPf 136 (184)
++.+|++.. .++.+.+|+...... ...++.++.+|+.|+++++++++ +.|+|||++|+.
T Consensus 21 la~~l~~~G----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~d~vi~~ag~~ 93 (258)
T PRK07890 21 LAVRAARAG----ADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFGRVDALVNNAFRV 93 (258)
T ss_pred HHHHHHHcC----CEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcCCccEEEECCccC
Confidence 555565443 567777776532111 11357889999999999988875 469999999864
No 88
>PRK07063 short chain dehydrogenase; Provisional
Probab=93.95 E-value=0.082 Score=43.47 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=48.3
Q ss_pred cccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeeccccccc---------CCCCCCEEEEeCCCHHHHHHHh
Q psy1304 53 FRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRE---------NLIDIPIIIADLKNESSILIMA 123 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~---------~~~~v~~v~vDv~D~~sL~a~l 123 (184)
++||+.-|.|- .+|--.-++.+|++.. .++.+.+|+.+...+ ...++.++++|+.|++++.+++
T Consensus 5 l~~k~vlVtGa---s~gIG~~~a~~l~~~G----~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 77 (260)
T PRK07063 5 LAGKVALVTGA---AQGIGAAIARAFAREG----AAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAV 77 (260)
T ss_pred cCCCEEEEECC---CchHHHHHHHHHHHCC----CEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHH
Confidence 45666666551 1121111455555443 567777775432111 1134678999999999999888
Q ss_pred h-------cCcEEEeccccc
Q psy1304 124 K-------KCRVILNCVGPY 136 (184)
Q Consensus 124 ~-------~~dVVIN~aGPf 136 (184)
+ +.|++||++|..
T Consensus 78 ~~~~~~~g~id~li~~ag~~ 97 (260)
T PRK07063 78 AAAEEAFGPLDVLVNNAGIN 97 (260)
T ss_pred HHHHHHhCCCcEEEECCCcC
Confidence 7 589999999964
No 89
>PRK07201 short chain dehydrogenase; Provisional
Probab=93.95 E-value=0.1 Score=49.07 Aligned_cols=88 Identities=16% Similarity=0.189 Sum_probs=58.0
Q ss_pred ccccCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccc-----c--CCCCCCEEEEeCCC----
Q psy1304 47 IGESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYR-----E--NLIDIPIIIADLKN---- 115 (184)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~-----~--~~~~v~~v~vDv~D---- 115 (184)
|-+.++|-|.. ++.+|.....+ -+|....|+..... . ...+++++..|+.|
T Consensus 5 VTGatGfIG~~----------------lv~~Ll~~~~g--~~V~~l~R~~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~ 66 (657)
T PRK07201 5 VTGGTGFIGRR----------------LVSRLLDRRRE--ATVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLTEPGLG 66 (657)
T ss_pred EeCCccHHHHH----------------HHHHHHhcCCC--CEEEEEECcchHHHHHHHHHhcCCCcEEEEecccCCccCC
Confidence 35667787776 66777643445 56666656432110 0 11467889999988
Q ss_pred --HHHHHHHhhcCcEEEecccccccc-------------chHHHHHHHHcCCC
Q psy1304 116 --ESSILIMAKKCRVILNCVGPYTWY-------------GEAVVKACIEAKTH 153 (184)
Q Consensus 116 --~~sL~a~l~~~dVVIN~aGPf~~~-------------g~~VaeACieAGth 153 (184)
.+.+.++ +++|+||||+|.+... ...++++|.+.|+.
T Consensus 67 ~~~~~~~~l-~~~D~Vih~Aa~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~ 118 (657)
T PRK07201 67 LSEADIAEL-GDIDHVVHLAAIYDLTADEEAQRAANVDGTRNVVELAERLQAA 118 (657)
T ss_pred cCHHHHHHh-cCCCEEEECceeecCCCCHHHHHHHHhHHHHHHHHHHHhcCCC
Confidence 3567776 9999999999975321 15788999998754
No 90
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=93.91 E-value=0.072 Score=44.01 Aligned_cols=59 Identities=8% Similarity=0.027 Sum_probs=41.3
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc---C-CCCCCEEEEeCCCHHHHHHHhh-------cCcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE---N-LIDIPIIIADLKNESSILIMAK-------KCRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~---~-~~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGPf 136 (184)
++.+|++. + .+|.+.+|+.+.... . ..++.++++|+.|+++++++++ ..|++||++|++
T Consensus 22 ia~~l~~~--G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~~ag~~ 91 (263)
T PRK06200 22 LVERFLAE--G--ARVAVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDAFGKLDCFVGNAGIW 91 (263)
T ss_pred HHHHHHHC--C--CEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHhcCCCCEEEECCCCc
Confidence 55555554 3 567777876532211 1 1357789999999999988876 469999999964
No 91
>PRK06949 short chain dehydrogenase; Provisional
Probab=93.87 E-value=0.098 Score=42.64 Aligned_cols=79 Identities=16% Similarity=0.123 Sum_probs=51.8
Q ss_pred ccCccccceeeecccccCCCCCCCchhhhhhhCC--CCCceeEEeeeeccccccc-------CCCCCCEEEEeCCCHHHH
Q psy1304 49 ESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAP--TSNLTRLGLLGARDCLYRE-------NLIDIPIIIADLKNESSI 119 (184)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~--~~~~~~iaLAGrr~~lg~~-------~~~~v~~v~vDv~D~~sL 119 (184)
.+..+.||++-|-| ....|..++++.. .+ .++.+.+|+.+.... ...++.++.+|+.|++++
T Consensus 3 ~~~~~~~k~ilItG-------asg~IG~~~a~~l~~~G--~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~ 73 (258)
T PRK06949 3 RSINLEGKVALVTG-------ASSGLGARFAQVLAQAG--AKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSI 73 (258)
T ss_pred cccCCCCCEEEEEC-------CCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHH
Confidence 34567788877766 1123445555322 23 577777776532110 113577899999999999
Q ss_pred HHHhh-------cCcEEEeccccc
Q psy1304 120 LIMAK-------KCRVILNCVGPY 136 (184)
Q Consensus 120 ~a~l~-------~~dVVIN~aGPf 136 (184)
.++++ +.|++||++|..
T Consensus 74 ~~~~~~~~~~~~~~d~li~~ag~~ 97 (258)
T PRK06949 74 KAAVAHAETEAGTIDILVNNSGVS 97 (258)
T ss_pred HHHHHHHHHhcCCCCEEEECCCCC
Confidence 99887 479999999953
No 92
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=93.87 E-value=0.08 Score=47.57 Aligned_cols=92 Identities=10% Similarity=0.090 Sum_probs=57.1
Q ss_pred ccccCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEE-eeeeccccccc---CCCCCCE---EEEeCCCHHHH
Q psy1304 47 IGESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLG-LLGARDCLYRE---NLIDIPI---IIADLKNESSI 119 (184)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~ia-LAGrr~~lg~~---~~~~v~~---v~vDv~D~~sL 119 (184)
|.+.+++.|+. .+..|++. |+ .++. +...++..+.. ..+.+.. ..++-.|.
T Consensus 5 IiGATG~vG~e----------------llr~L~~h-P~--~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~--- 62 (346)
T TIGR01850 5 IVGASGYTGGE----------------LLRLLLNH-PE--VEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDE--- 62 (346)
T ss_pred EECCCCHHHHH----------------HHHHHHcC-CC--ceEEEEeccchhcCCChHHhCccccccCCceeecCCH---
Confidence 56778888887 77888755 66 6655 53333322221 1122221 11222233
Q ss_pred HHHhhcCcEEEeccccccccchHHHHHHHHcCCCEeeCCCChH
Q psy1304 120 LIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPY 162 (184)
Q Consensus 120 ~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltGE~~ 162 (184)
+++++++|+|+-|++ . .....++..++++|++.||++++..
T Consensus 63 ~~~~~~~DvVf~alP-~-~~s~~~~~~~~~~G~~VIDlS~~fR 103 (346)
T TIGR01850 63 EEIAEDADVVFLALP-H-GVSAELAPELLAAGVKVIDLSADFR 103 (346)
T ss_pred HHhhcCCCEEEECCC-c-hHHHHHHHHHHhCCCEEEeCChhhh
Confidence 345568999999984 4 3457888889999999999998654
No 93
>PRK06197 short chain dehydrogenase; Provisional
Probab=93.75 E-value=0.075 Score=45.28 Aligned_cols=77 Identities=17% Similarity=0.110 Sum_probs=47.4
Q ss_pred cccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeeccccccc---------CCCCCCEEEEeCCCHHHHHHHh
Q psy1304 53 FRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRE---------NLIDIPIIIADLKNESSILIMA 123 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~---------~~~~v~~v~vDv~D~~sL~a~l 123 (184)
++||+.-|.|- .+|----++..|++. + .++.+.+|+.+...+ ....+.++++|+.|.+++.+++
T Consensus 14 ~~~k~vlItGa---s~gIG~~~a~~l~~~--G--~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~ 86 (306)
T PRK06197 14 QSGRVAVVTGA---NTGLGYETAAALAAK--G--AHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAA 86 (306)
T ss_pred CCCCEEEEcCC---CCcHHHHHHHHHHHC--C--CEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHH
Confidence 45666666551 122001144444444 3 577788876432211 0135678899999999999887
Q ss_pred h-------cCcEEEeccccc
Q psy1304 124 K-------KCRVILNCVGPY 136 (184)
Q Consensus 124 ~-------~~dVVIN~aGPf 136 (184)
+ +.|+|||++|..
T Consensus 87 ~~~~~~~~~iD~li~nAg~~ 106 (306)
T PRK06197 87 DALRAAYPRIDLLINNAGVM 106 (306)
T ss_pred HHHHhhCCCCCEEEECCccc
Confidence 6 479999999853
No 94
>PRK06057 short chain dehydrogenase; Provisional
Probab=93.70 E-value=0.073 Score=43.77 Aligned_cols=77 Identities=8% Similarity=0.045 Sum_probs=46.5
Q ss_pred cccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccccCC--CCCCEEEEeCCCHHHHHHHhhc-----
Q psy1304 53 FRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRENL--IDIPIIIADLKNESSILIMAKK----- 125 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~~~--~~v~~v~vDv~D~~sL~a~l~~----- 125 (184)
++||++-|.|- +.-|..++++..-..-.++.+.+|+........ -...++++|+.|+++++++++.
T Consensus 5 ~~~~~vlItGa-------sggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (255)
T PRK06057 5 LAGRVAVITGG-------GSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEVGGLFVPTDVTDEDAVNALFDTAAETY 77 (255)
T ss_pred CCCCEEEEECC-------CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHcCCcEEEeeCCCHHHHHHHHHHHHHHc
Confidence 56666666551 112444444222111156777777654221111 1236899999999999988874
Q ss_pred --CcEEEeccccc
Q psy1304 126 --CRVILNCVGPY 136 (184)
Q Consensus 126 --~dVVIN~aGPf 136 (184)
.|+|||++|..
T Consensus 78 ~~id~vi~~ag~~ 90 (255)
T PRK06057 78 GSVDIAFNNAGIS 90 (255)
T ss_pred CCCCEEEECCCcC
Confidence 69999999854
No 95
>PRK06482 short chain dehydrogenase; Provisional
Probab=93.70 E-value=0.1 Score=43.42 Aligned_cols=59 Identities=8% Similarity=0.025 Sum_probs=41.2
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccc----ccCCCCCCEEEEeCCCHHHHHHHhhc-------CcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLY----RENLIDIPIIIADLKNESSILIMAKK-------CRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg----~~~~~~v~~v~vDv~D~~sL~a~l~~-------~dVVIN~aGPf 136 (184)
++.+|++.. -++.+..|+.+.. .....++.++.+|+.|.+++.+++++ .|+||||+|..
T Consensus 18 la~~L~~~g----~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 87 (276)
T PRK06482 18 MTERLLARG----DRVAATVRRPDALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAALGRIDVVVSNAGYG 87 (276)
T ss_pred HHHHHHHCC----CEEEEEeCCHHHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 667777653 4566666654211 11124678999999999999988763 79999999864
No 96
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=93.69 E-value=0.055 Score=44.31 Aligned_cols=75 Identities=16% Similarity=0.123 Sum_probs=49.8
Q ss_pred cccceeeecccccCCCCCCCchhhhhhhCC--CCCceeEEeeeeccccccc-------CCCCCCEEEEeCCCHHHHHHHh
Q psy1304 53 FRGQTLSVQDKIRPGRGSNPRPSAYKADAP--TSNLTRLGLLGARDCLYRE-------NLIDIPIIIADLKNESSILIMA 123 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~r~~~~La~~~--~~~~~~iaLAGrr~~lg~~-------~~~~v~~v~vDv~D~~sL~a~l 123 (184)
+.||++-|.| ....|..++++.. .+ .++.+.+|+.+...+ ...++.++.+|+.|++++.+++
T Consensus 9 ~~~k~ilItG-------as~~IG~~la~~l~~~G--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 79 (256)
T PRK06124 9 LAGQVALVTG-------SARGLGFEIARALAGAG--AHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAF 79 (256)
T ss_pred CCCCEEEEEC-------CCchHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHH
Confidence 6677777765 2223555555322 24 688888887532111 1135789999999999998887
Q ss_pred hc-------CcEEEeccccc
Q psy1304 124 KK-------CRVILNCVGPY 136 (184)
Q Consensus 124 ~~-------~dVVIN~aGPf 136 (184)
++ .|+|||++|..
T Consensus 80 ~~~~~~~~~id~vi~~ag~~ 99 (256)
T PRK06124 80 ARIDAEHGRLDILVNNVGAR 99 (256)
T ss_pred HHHHHhcCCCCEEEECCCCC
Confidence 74 48999999953
No 97
>PRK05717 oxidoreductase; Validated
Probab=93.68 E-value=0.058 Score=44.35 Aligned_cols=80 Identities=11% Similarity=0.013 Sum_probs=48.4
Q ss_pred cCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeeccccccc----CCCCCCEEEEeCCCHHHHHHHhhc
Q psy1304 50 SQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRE----NLIDIPIIIADLKNESSILIMAKK 125 (184)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~----~~~~v~~v~vDv~D~~sL~a~l~~ 125 (184)
...|+||+.-|.|- .++--.-++.+|++. + .++.+.++++....+ ....+.++.+|+.|++++.++++.
T Consensus 5 ~~~~~~k~vlItG~---sg~IG~~~a~~l~~~--g--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 77 (255)
T PRK05717 5 NPGHNGRVALVTGA---ARGIGLGIAAWLIAE--G--WQVVLADLDRERGSKVAKALGENAWFIAMDVADEAQVAAGVAE 77 (255)
T ss_pred CcccCCCEEEEeCC---cchHHHHHHHHHHHc--C--CEEEEEcCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHH
Confidence 34567777666662 111001144555544 3 567777765432211 113577899999999998776553
Q ss_pred -------CcEEEeccccc
Q psy1304 126 -------CRVILNCVGPY 136 (184)
Q Consensus 126 -------~dVVIN~aGPf 136 (184)
.|+|||++|..
T Consensus 78 ~~~~~g~id~li~~ag~~ 95 (255)
T PRK05717 78 VLGQFGRLDALVCNAAIA 95 (255)
T ss_pred HHHHhCCCCEEEECCCcc
Confidence 69999999854
No 98
>PRK08177 short chain dehydrogenase; Provisional
Probab=93.68 E-value=0.14 Score=41.42 Aligned_cols=59 Identities=8% Similarity=0.003 Sum_probs=42.8
Q ss_pred hhhhhhhCCCCCceeEEeeeecccccc--cCCCCCCEEEEeCCCHHHHHHHhh-----cCcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYR--ENLIDIPIIIADLKNESSILIMAK-----KCRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~--~~~~~v~~v~vDv~D~~sL~a~l~-----~~dVVIN~aGPf 136 (184)
++..|++. + .+|.+.+|+..... ....++.+..+|+.|+++++++++ +.|+|||++|.+
T Consensus 17 la~~l~~~--G--~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi~~ag~~ 82 (225)
T PRK08177 17 LVDRLLER--G--WQVTATVRGPQQDTALQALPGVHIEKLDMNDPASLDQLLQRLQGQRFDLLFVNAGIS 82 (225)
T ss_pred HHHHHHhC--C--CEEEEEeCCCcchHHHHhccccceEEcCCCCHHHHHHHHHHhhcCCCCEEEEcCccc
Confidence 66777765 3 56777777653221 122467889999999999988887 479999999865
No 99
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=93.67 E-value=0.14 Score=41.65 Aligned_cols=57 Identities=9% Similarity=0.125 Sum_probs=41.1
Q ss_pred hhhhhhhCCCCCceeEEeeeecccccccCCCCCCEEEEeCCCHHHHHHHhhc-------CcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRENLIDIPIIIADLKNESSILIMAKK-------CRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~~~~~v~~v~vDv~D~~sL~a~l~~-------~dVVIN~aGPf 136 (184)
++.+|++. + .++.+.+|+... ....++.++++|+.|++++.+++++ .|+||||+|..
T Consensus 24 la~~l~~~--G--~~v~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 87 (252)
T PRK08220 24 VALAFVEA--G--AKVIGFDQAFLT--QEDYPFATFVLDVSDAAAVAQVCQRLLAETGPLDVLVNAAGIL 87 (252)
T ss_pred HHHHHHHC--C--CEEEEEecchhh--hcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 45555543 3 567777776511 1224578899999999999998875 69999999965
No 100
>PRK08862 short chain dehydrogenase; Provisional
Probab=93.65 E-value=0.087 Score=43.64 Aligned_cols=76 Identities=12% Similarity=0.015 Sum_probs=48.2
Q ss_pred cccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeeccccccc-------CCCCCCEEEEeCCCHHHHHHHhh-
Q psy1304 53 FRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRE-------NLIDIPIIIADLKNESSILIMAK- 124 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~-------~~~~v~~v~vDv~D~~sL~a~l~- 124 (184)
++||+.-|-|- ++|-..-++..|++. + .++.+.+|++....+ ...++...++|+.|+++++++++
T Consensus 3 ~~~k~~lVtGa---s~GIG~aia~~la~~--G--~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (227)
T PRK08862 3 IKSSIILITSA---GSVLGRTISCHFARL--G--ATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDA 75 (227)
T ss_pred CCCeEEEEECC---ccHHHHHHHHHHHHC--C--CEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHH
Confidence 56777777662 223111244444443 4 678888886642211 11346678899999999988764
Q ss_pred -------cCcEEEecccc
Q psy1304 125 -------KCRVILNCVGP 135 (184)
Q Consensus 125 -------~~dVVIN~aGP 135 (184)
+.|++||++|.
T Consensus 76 ~~~~~g~~iD~li~nag~ 93 (227)
T PRK08862 76 IEQQFNRAPDVLVNNWTS 93 (227)
T ss_pred HHHHhCCCCCEEEECCcc
Confidence 57999999973
No 101
>PRK06180 short chain dehydrogenase; Provisional
Probab=93.65 E-value=0.088 Score=44.12 Aligned_cols=59 Identities=12% Similarity=-0.043 Sum_probs=41.7
Q ss_pred hhhhhhhCCCCCceeEEeeeecccccc----cCCCCCCEEEEeCCCHHHHHHHhh-------cCcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYR----ENLIDIPIIIADLKNESSILIMAK-------KCRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~----~~~~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGPf 136 (184)
++.+|++. + .++.+.+|+.+... ....++.++.+|+.|++++.++++ +.|+|||++|..
T Consensus 20 la~~l~~~--G--~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~d~vv~~ag~~ 89 (277)
T PRK06180 20 LAQAALAA--G--HRVVGTVRSEAARADFEALHPDRALARLLDVTDFDAIDAVVADAEATFGPIDVLVNNAGYG 89 (277)
T ss_pred HHHHHHhC--c--CEEEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 55566554 4 66777777653211 011457789999999999998887 479999999974
No 102
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=93.65 E-value=0.1 Score=43.21 Aligned_cols=77 Identities=8% Similarity=0.001 Sum_probs=47.6
Q ss_pred CccccceeeecccccCCCCCCCchhhhhhhCC--CCCceeEEeeeeccc-ccc--------cCCCCCCEEEEeCCCHHHH
Q psy1304 51 QPFRGQTLSVQDKIRPGRGSNPRPSAYKADAP--TSNLTRLGLLGARDC-LYR--------ENLIDIPIIIADLKNESSI 119 (184)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~--~~~~~~iaLAGrr~~-lg~--------~~~~~v~~v~vDv~D~~sL 119 (184)
..++||++-|-| .+..|..++|+.. .+ .++.+.+|++. ... ....++.++.+|+.|++++
T Consensus 4 ~~l~~k~vlItG-------as~gIG~~ia~~l~~~G--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 74 (260)
T PRK08416 4 NEMKGKTLVISG-------GTRGIGKAIVYEFAQSG--VNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETY 74 (260)
T ss_pred cccCCCEEEEeC-------CCchHHHHHHHHHHHCC--CEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHH
Confidence 346777777765 2223555555221 23 56777665431 100 0113567899999999999
Q ss_pred HHHhhc-------CcEEEeccccc
Q psy1304 120 LIMAKK-------CRVILNCVGPY 136 (184)
Q Consensus 120 ~a~l~~-------~dVVIN~aGPf 136 (184)
+++++. .|++||++|.+
T Consensus 75 ~~~~~~~~~~~g~id~lv~nAg~~ 98 (260)
T PRK08416 75 KELFKKIDEDFDRVDFFISNAIIS 98 (260)
T ss_pred HHHHHHHHHhcCCccEEEECcccc
Confidence 888774 69999999743
No 103
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=93.63 E-value=0.075 Score=43.62 Aligned_cols=59 Identities=10% Similarity=0.029 Sum_probs=42.4
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc----CCCCCCEEEEeCCCHHHHHHHhh-------cCcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE----NLIDIPIIIADLKNESSILIMAK-------KCRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~----~~~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGPf 136 (184)
++.+|++.. .++.+.+|+.+.... ...++.++.+|+.|+++++++++ ..|++|||+|..
T Consensus 22 ia~~l~~~G----~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~ag~~ 91 (257)
T PRK07067 22 VAERYLAEG----ARVVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVERFGGIDILFNNAALF 91 (257)
T ss_pred HHHHHHHcC----CEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 677777653 567777776542211 11357789999999999999887 479999999854
No 104
>PRK07454 short chain dehydrogenase; Provisional
Probab=93.60 E-value=0.058 Score=43.77 Aligned_cols=59 Identities=19% Similarity=0.105 Sum_probs=41.6
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc-------CCCCCCEEEEeCCCHHHHHHHhhc-------CcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE-------NLIDIPIIIADLKNESSILIMAKK-------CRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~-------~~~~v~~v~vDv~D~~sL~a~l~~-------~dVVIN~aGPf 136 (184)
++.+|++. + .++.+.+|+...... ...++.++.+|+.|++++.++++. .|+|||++|.+
T Consensus 22 la~~l~~~--G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~ag~~ 94 (241)
T PRK07454 22 TALAFAKA--G--WDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGCPDVLINNAGMA 94 (241)
T ss_pred HHHHHHHC--C--CEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCcc
Confidence 56666653 3 567777776532110 114577899999999999888774 79999999965
No 105
>PRK09291 short chain dehydrogenase; Provisional
Probab=93.57 E-value=0.16 Score=41.45 Aligned_cols=59 Identities=14% Similarity=-0.049 Sum_probs=40.4
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccc-------ccCCCCCCEEEEeCCCHHHHHHHhh-cCcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLY-------RENLIDIPIIIADLKNESSILIMAK-KCRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg-------~~~~~~v~~v~vDv~D~~sL~a~l~-~~dVVIN~aGPf 136 (184)
++.+|++.. .++.+..|+.... .....++.++++|+.|++++.+++. +.|+||||+|+.
T Consensus 18 ia~~l~~~G----~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~ag~~ 84 (257)
T PRK09291 18 VALRLARKG----HNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNNAGIG 84 (257)
T ss_pred HHHHHHHCC----CEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEECCCcC
Confidence 566666543 4455555543211 1112457899999999999999887 899999999854
No 106
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.57 E-value=0.075 Score=45.00 Aligned_cols=77 Identities=14% Similarity=0.135 Sum_probs=48.1
Q ss_pred ccccceeeeccccc---CCCCCCCchhhhhhhCCCCCceeEEeeeecccccc------cCCCCCCEEEEeCCCHHHHHHH
Q psy1304 52 PFRGQTLSVQDKIR---PGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYR------ENLIDIPIIIADLKNESSILIM 122 (184)
Q Consensus 52 ~~~~~~~~~~~~~~---~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~------~~~~~v~~v~vDv~D~~sL~a~ 122 (184)
.++||+.-|.|--+ -|+. ++..|++. + .++.+.+|++.... ...+...++++|+.|+++++++
T Consensus 4 ~l~~k~~lVTGas~~~GIG~a----iA~~la~~--G--a~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~ 75 (271)
T PRK06505 4 LMQGKRGLIMGVANDHSIAWG----IAKQLAAQ--G--AELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAV 75 (271)
T ss_pred ccCCCEEEEeCCCCCCcHHHH----HHHHHHhC--C--CEEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHH
Confidence 36778877777321 1222 44445443 3 67888877542110 0112234688999999999888
Q ss_pred hh-------cCcEEEeccccc
Q psy1304 123 AK-------KCRVILNCVGPY 136 (184)
Q Consensus 123 l~-------~~dVVIN~aGPf 136 (184)
++ ..|++||++|..
T Consensus 76 ~~~~~~~~g~iD~lVnnAG~~ 96 (271)
T PRK06505 76 FEALEKKWGKLDFVVHAIGFS 96 (271)
T ss_pred HHHHHHHhCCCCEEEECCccC
Confidence 75 369999999943
No 107
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.56 E-value=0.11 Score=44.27 Aligned_cols=78 Identities=13% Similarity=0.058 Sum_probs=47.3
Q ss_pred cccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeeccccc---c---cCCCCCCEEEEeCCCHHHHHHHhhc-
Q psy1304 53 FRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLY---R---ENLIDIPIIIADLKNESSILIMAKK- 125 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg---~---~~~~~v~~v~vDv~D~~sL~a~l~~- 125 (184)
++||+.-|.|--. ++| |-.++|+..-..-.++.+.+|+++.. . .....-.++++|+.|+++++++++.
T Consensus 3 l~~k~~lItGas~-~~G----IG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~i 77 (274)
T PRK08415 3 MKGKKGLIVGVAN-NKS----IAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSDYVYELDVSKPEHFKSLAESL 77 (274)
T ss_pred cCCcEEEEECCCC-CCC----HHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHH
Confidence 4677777776210 123 55555532211116888888764210 0 0111115789999999999988754
Q ss_pred ------CcEEEecccc
Q psy1304 126 ------CRVILNCVGP 135 (184)
Q Consensus 126 ------~dVVIN~aGP 135 (184)
.|++||++|-
T Consensus 78 ~~~~g~iDilVnnAG~ 93 (274)
T PRK08415 78 KKDLGKIDFIVHSVAF 93 (274)
T ss_pred HHHcCCCCEEEECCcc
Confidence 6999999994
No 108
>PRK09135 pteridine reductase; Provisional
Probab=93.53 E-value=0.099 Score=42.04 Aligned_cols=59 Identities=12% Similarity=0.101 Sum_probs=39.8
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc---------CCCCCCEEEEeCCCHHHHHHHhhc-------CcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE---------NLIDIPIIIADLKNESSILIMAKK-------CRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~---------~~~~v~~v~vDv~D~~sL~a~l~~-------~dVVIN~aGPf 136 (184)
++.+|++. + .++.+.+|+.....+ ......++.+|+.|.+++.++++. .|+||||+|..
T Consensus 22 l~~~l~~~--g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 96 (249)
T PRK09135 22 IARTLHAA--G--YRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAAFGRLDALVNNASSF 96 (249)
T ss_pred HHHHHHHC--C--CEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 56666654 3 566666665321100 013467899999999999998874 69999999953
No 109
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=93.49 E-value=0.31 Score=40.52 Aligned_cols=87 Identities=13% Similarity=0.069 Sum_probs=60.7
Q ss_pred ccccCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccccCCCCCCEEEEeCCCHHHHHHHhhcC
Q psy1304 47 IGESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRENLIDIPIIIADLKNESSILIMAKKC 126 (184)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~~~~~v~~v~vDv~D~~sL~a~l~~~ 126 (184)
|.+.++|-|.- ++.+|.....+ +....|...........+.++..|+.|.+.+.+.++++
T Consensus 5 VtG~tGfiG~~----------------l~~~L~~~g~~----V~~~~r~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 64 (314)
T COG0451 5 VTGGAGFIGSH----------------LVERLLAAGHD----VRGLDRLRDGLDPLLSGVEFVVLDLTDRDLVDELAKGV 64 (314)
T ss_pred EEcCcccHHHH----------------HHHHHHhCCCe----EEEEeCCCccccccccccceeeecccchHHHHHHHhcC
Confidence 34557888866 67778766444 33333433322211146889999999999999999999
Q ss_pred -cEEEeccccccccc-----------------hHHHHHHHHcCCC
Q psy1304 127 -RVILNCVGPYTWYG-----------------EAVVKACIEAKTH 153 (184)
Q Consensus 127 -dVVIN~aGPf~~~g-----------------~~VaeACieAGth 153 (184)
|+||++++...... .+++++|.+.|+.
T Consensus 65 ~d~vih~aa~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~ 109 (314)
T COG0451 65 PDAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVK 109 (314)
T ss_pred CCEEEEccccCchhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999885322 4678899887764
No 110
>PRK08251 short chain dehydrogenase; Provisional
Probab=93.49 E-value=0.089 Score=42.74 Aligned_cols=58 Identities=14% Similarity=0.104 Sum_probs=40.1
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc---------CCCCCCEEEEeCCCHHHHHHHhh-------cCcEEEecccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE---------NLIDIPIIIADLKNESSILIMAK-------KCRVILNCVGP 135 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~---------~~~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGP 135 (184)
++.+|++.. .++.+.+|+.....+ ...++.++.+|+.|++++.++++ +.|+|||++|.
T Consensus 18 la~~l~~~g----~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 91 (248)
T PRK08251 18 MAREFAAKG----RDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGGLDRVIVNAGI 91 (248)
T ss_pred HHHHHHHcC----CEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 556666553 467777776532110 11357789999999999988776 47999999983
No 111
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=93.48 E-value=0.36 Score=41.22 Aligned_cols=49 Identities=12% Similarity=0.147 Sum_probs=38.2
Q ss_pred CCCEEEEeCCCHHHHHHHhh--cCcEEEeccccccc----------------cchHHHHHHHHcCCC
Q psy1304 105 DIPIIIADLKNESSILIMAK--KCRVILNCVGPYTW----------------YGEAVVKACIEAKTH 153 (184)
Q Consensus 105 ~v~~v~vDv~D~~sL~a~l~--~~dVVIN~aGPf~~----------------~g~~VaeACieAGth 153 (184)
++.++.+|+.|++++.++++ ++|+|||++|.... .-..++++|.+.|+.
T Consensus 51 ~~~~~~~Dl~d~~~~~~~~~~~~~d~vvh~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~ 117 (338)
T PRK10675 51 HPTFVEGDIRNEALLTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117 (338)
T ss_pred CceEEEccCCCHHHHHHHHhcCCCCEEEECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 46788999999999999887 58999999974321 014778999998874
No 112
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=93.48 E-value=0.11 Score=45.39 Aligned_cols=70 Identities=11% Similarity=0.050 Sum_probs=49.2
Q ss_pred ccccCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccc------cCCCCCCEEEEeCCCHHHHH
Q psy1304 47 IGESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYR------ENLIDIPIIIADLKNESSIL 120 (184)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~------~~~~~v~~v~vDv~D~~sL~ 120 (184)
|.+.++|=|.. ++.+|++.. .++.+..|+..... ....+++++.+|+.|++++.
T Consensus 15 VtG~~GfIG~~----------------l~~~L~~~G----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~ 74 (353)
T PLN02896 15 VTGATGYIGSW----------------LVKLLLQRG----YTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFD 74 (353)
T ss_pred EECCCcHHHHH----------------HHHHHHHCC----CEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHH
Confidence 45667787777 777777654 34444445432211 01145778999999999999
Q ss_pred HHhhcCcEEEeccccc
Q psy1304 121 IMAKKCRVILNCVGPY 136 (184)
Q Consensus 121 a~l~~~dVVIN~aGPf 136 (184)
++++++|+|||++|+.
T Consensus 75 ~~~~~~d~Vih~A~~~ 90 (353)
T PLN02896 75 EAVKGCDGVFHVAASM 90 (353)
T ss_pred HHHcCCCEEEECCccc
Confidence 9999999999999864
No 113
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=93.47 E-value=0.24 Score=42.70 Aligned_cols=48 Identities=8% Similarity=0.058 Sum_probs=37.6
Q ss_pred ecccccccCCCCCCEEEEeCCCHHHHHHHhhcCcEEEeccccccccchH
Q psy1304 94 ARDCLYRENLIDIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYGEA 142 (184)
Q Consensus 94 rr~~lg~~~~~~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~g~~ 142 (184)
|+..+-. ..+.+.+++.|+.|++++...+.++|+||++.|+.+--...
T Consensus 32 Rn~~K~~-~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~~~~~~~ 79 (211)
T COG2910 32 RNASKLA-ARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAGASDNDE 79 (211)
T ss_pred eChHhcc-ccccceeecccccChhhhHhhhcCCceEEEeccCCCCChhH
Confidence 4544432 22678899999999999999999999999999988544433
No 114
>PRK07825 short chain dehydrogenase; Provisional
Probab=93.47 E-value=0.069 Score=44.35 Aligned_cols=59 Identities=17% Similarity=0.131 Sum_probs=40.7
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc---CCCCCCEEEEeCCCHHHHHHHhhc-------CcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE---NLIDIPIIIADLKNESSILIMAKK-------CRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~---~~~~v~~v~vDv~D~~sL~a~l~~-------~dVVIN~aGPf 136 (184)
++.+|++. + .++.+.+|+.+...+ ....+.++.+|+.|++++++++++ .|++||++|..
T Consensus 21 la~~l~~~--G--~~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~ag~~ 89 (273)
T PRK07825 21 TARALAAL--G--ARVAIGDLDEALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEADLGPIDVLVNNAGVM 89 (273)
T ss_pred HHHHHHHC--C--CEEEEEECCHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 45555543 3 567777776543221 113578999999999998777654 68999999854
No 115
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=93.46 E-value=0.12 Score=39.12 Aligned_cols=90 Identities=9% Similarity=0.077 Sum_probs=56.3
Q ss_pred ccccCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEe-eeecccccccCC---C---CCCEEEEeCCCHHHH
Q psy1304 47 IGESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGL-LGARDCLYRENL---I---DIPIIIADLKNESSI 119 (184)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaL-AGrr~~lg~~~~---~---~v~~v~vDv~D~~sL 119 (184)
|.+.+++.|+. +...|++ .|+ +.+.. .++++..|..-. + ...-..++-.|.+.+
T Consensus 4 IvGAtG~vG~~----------------l~~lL~~-hp~--~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (121)
T PF01118_consen 4 IVGATGYVGRE----------------LLRLLAE-HPD--FELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEEL 64 (121)
T ss_dssp EESTTSHHHHH----------------HHHHHHH-TST--EEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHH
T ss_pred EECCCCHHHHH----------------HHHHHhc-CCC--ccEEEeeeeccccCCeeehhccccccccceeEeecchhHh
Confidence 56778888888 6678888 556 55444 444442332111 1 122222222444433
Q ss_pred HHHhhcCcEEEeccccccccchHHHHHHHHcCCCEeeCCCCh
Q psy1304 120 LIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEP 161 (184)
Q Consensus 120 ~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltGE~ 161 (184)
.++|+|+.|.+.. .....+...++.|+.-||++++.
T Consensus 65 ----~~~Dvvf~a~~~~--~~~~~~~~~~~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 65 ----SDVDVVFLALPHG--ASKELAPKLLKAGIKVIDLSGDF 100 (121)
T ss_dssp ----TTESEEEE-SCHH--HHHHHHHHHHHTTSEEEESSSTT
T ss_pred ----hcCCEEEecCchh--HHHHHHHHHhhCCcEEEeCCHHH
Confidence 8999999998633 23688888899999999999875
No 116
>PRK08339 short chain dehydrogenase; Provisional
Probab=93.46 E-value=0.11 Score=43.51 Aligned_cols=77 Identities=17% Similarity=0.203 Sum_probs=49.2
Q ss_pred cccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeeccccccc--------CCCCCCEEEEeCCCHHHHHHHhh
Q psy1304 53 FRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRE--------NLIDIPIIIADLKNESSILIMAK 124 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~--------~~~~v~~v~vDv~D~~sL~a~l~ 124 (184)
|+||+.-|.|- ++|---.++..|++. + .++.+.+|+.+.... ...++.++++|+.|+++++++++
T Consensus 6 l~~k~~lItGa---s~gIG~aia~~l~~~--G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~ 78 (263)
T PRK08339 6 LSGKLAFTTAS---SKGIGFGVARVLARA--G--ADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVK 78 (263)
T ss_pred CCCCEEEEeCC---CCcHHHHHHHHHHHC--C--CEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHH
Confidence 56777666551 122111244555544 3 578888876532110 11357789999999999999887
Q ss_pred ------cCcEEEeccccc
Q psy1304 125 ------KCRVILNCVGPY 136 (184)
Q Consensus 125 ------~~dVVIN~aGPf 136 (184)
+.|++||++|..
T Consensus 79 ~~~~~g~iD~lv~nag~~ 96 (263)
T PRK08339 79 ELKNIGEPDIFFFSTGGP 96 (263)
T ss_pred HHHhhCCCcEEEECCCCC
Confidence 379999999853
No 117
>PRK07062 short chain dehydrogenase; Provisional
Probab=93.45 E-value=0.071 Score=43.99 Aligned_cols=77 Identities=12% Similarity=0.137 Sum_probs=47.4
Q ss_pred cccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeeccccccc-------C--CCCCCEEEEeCCCHHHHHHHh
Q psy1304 53 FRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRE-------N--LIDIPIIIADLKNESSILIMA 123 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~-------~--~~~v~~v~vDv~D~~sL~a~l 123 (184)
++||+.-|.|- ++| |..++++..-..-.++.+.+|+.+.... . ..++.++.+|+.|++++.+++
T Consensus 6 l~~k~~lItGa---s~g----iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 78 (265)
T PRK07062 6 LEGRVAVVTGG---SSG----IGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFA 78 (265)
T ss_pred cCCCEEEEeCC---Cch----HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHH
Confidence 56777776661 222 4444443221111678888876532110 1 124568899999999998877
Q ss_pred hc-------CcEEEeccccc
Q psy1304 124 KK-------CRVILNCVGPY 136 (184)
Q Consensus 124 ~~-------~dVVIN~aGPf 136 (184)
+. .|++||++|..
T Consensus 79 ~~~~~~~g~id~li~~Ag~~ 98 (265)
T PRK07062 79 AAVEARFGGVDMLVNNAGQG 98 (265)
T ss_pred HHHHHhcCCCCEEEECCCCC
Confidence 63 69999999953
No 118
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=93.44 E-value=0.11 Score=46.48 Aligned_cols=40 Identities=10% Similarity=0.133 Sum_probs=32.5
Q ss_pred HhhcCcEEEeccccccccchHHHHHHHHcCCCEeeCCCChHH
Q psy1304 122 MAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYF 163 (184)
Q Consensus 122 ~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltGE~~~ 163 (184)
...++|+|+-|.+.. ....++.+|+++|+|-||++++..+
T Consensus 65 ~~~~vD~Vf~alP~~--~~~~~v~~a~~aG~~VID~S~~fR~ 104 (343)
T PRK00436 65 ILAGADVVFLALPHG--VSMDLAPQLLEAGVKVIDLSADFRL 104 (343)
T ss_pred HhcCCCEEEECCCcH--HHHHHHHHHHhCCCEEEECCcccCC
Confidence 457899999998543 3468888999999999999987654
No 119
>PRK05993 short chain dehydrogenase; Provisional
Probab=93.43 E-value=0.064 Score=45.06 Aligned_cols=59 Identities=8% Similarity=-0.067 Sum_probs=40.4
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc-CCCCCCEEEEeCCCHHHHHHHhhc--------CcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE-NLIDIPIIIADLKNESSILIMAKK--------CRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~-~~~~v~~v~vDv~D~~sL~a~l~~--------~dVVIN~aGPf 136 (184)
++..|++. + .++.+.+|+.+...+ ....+.++.+|+.|++++++++++ .|+|||++|..
T Consensus 20 la~~l~~~--G--~~Vi~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~li~~Ag~~ 87 (277)
T PRK05993 20 CARALQSD--G--WRVFATCRKEEDVAALEAEGLEAFQLDYAEPESIAALVAQVLELSGGRLDALFNNGAYG 87 (277)
T ss_pred HHHHHHHC--C--CEEEEEECCHHHHHHHHHCCceEEEccCCCHHHHHHHHHHHHHHcCCCccEEEECCCcC
Confidence 44555543 4 678888886543211 113578899999999998888763 59999999843
No 120
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.40 E-value=0.12 Score=43.08 Aligned_cols=79 Identities=18% Similarity=0.201 Sum_probs=49.7
Q ss_pred CccccceeeecccccCCCCCCCchhhhhhhC--CCCCceeEEeeeecc--ccccc---CC-CCCCEEEEeCCCHHHHHHH
Q psy1304 51 QPFRGQTLSVQDKIRPGRGSNPRPSAYKADA--PTSNLTRLGLLGARD--CLYRE---NL-IDIPIIIADLKNESSILIM 122 (184)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~--~~~~~~~iaLAGrr~--~lg~~---~~-~~v~~v~vDv~D~~sL~a~ 122 (184)
+.|+||+.-|.|-- +++| |..++|+. ..+ .++.+.+|++ +.... .. .+..++++|+.|+++++++
T Consensus 3 ~~~~~k~~lItGa~-~s~G----IG~a~a~~la~~G--~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~ 75 (256)
T PRK07889 3 GLLEGKRILVTGVI-TDSS----IAFHVARVAQEQG--AEVVLTGFGRALRLTERIAKRLPEPAPVLELDVTNEEHLASL 75 (256)
T ss_pred ccccCCEEEEeCCC-Ccch----HHHHHHHHHHHCC--CEEEEecCccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHHH
Confidence 34778887777620 0123 54555532 123 6788887653 21110 11 3467899999999999888
Q ss_pred hh-------cCcEEEeccccc
Q psy1304 123 AK-------KCRVILNCVGPY 136 (184)
Q Consensus 123 l~-------~~dVVIN~aGPf 136 (184)
++ +.|++||++|..
T Consensus 76 ~~~~~~~~g~iD~li~nAG~~ 96 (256)
T PRK07889 76 ADRVREHVDGLDGVVHSIGFA 96 (256)
T ss_pred HHHHHHHcCCCcEEEEccccc
Confidence 65 479999999854
No 121
>PRK12828 short chain dehydrogenase; Provisional
Probab=93.35 E-value=0.19 Score=40.06 Aligned_cols=59 Identities=17% Similarity=0.214 Sum_probs=40.5
Q ss_pred hhhhhhhCCCCCceeEEeeeecccccc-----cCCCCCCEEEEeCCCHHHHHHHhh-------cCcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYR-----ENLIDIPIIIADLKNESSILIMAK-------KCRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~-----~~~~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGPf 136 (184)
++..|++. + .++.+.+|+..... ......+++.+|+.|.+++.++++ +.|+|||++|.+
T Consensus 23 la~~l~~~--G--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 93 (239)
T PRK12828 23 TAAWLAAR--G--ARVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVDEVNRQFGRLDALVNIAGAF 93 (239)
T ss_pred HHHHHHHC--C--CeEEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHHHHhCCcCEEEECCccc
Confidence 55555544 4 56777777543211 011356788899999999998887 579999999854
No 122
>PRK08628 short chain dehydrogenase; Provisional
Probab=93.31 E-value=0.14 Score=41.99 Aligned_cols=76 Identities=12% Similarity=0.076 Sum_probs=46.8
Q ss_pred cccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccc------cCCCCCCEEEEeCCCHHHHHHHhh--
Q psy1304 53 FRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYR------ENLIDIPIIIADLKNESSILIMAK-- 124 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~------~~~~~v~~v~vDv~D~~sL~a~l~-- 124 (184)
++||++-|-|- ..+---.++.+|++.. .++.+.+|++.... ....++.++.+|+.|++++.++++
T Consensus 5 l~~~~ilItGa---sggiG~~la~~l~~~G----~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 77 (258)
T PRK08628 5 LKDKVVIVTGG---ASGIGAAISLRLAEEG----AIPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRDAVEQT 77 (258)
T ss_pred cCCCEEEEeCC---CChHHHHHHHHHHHcC----CcEEEEcCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHH
Confidence 55666666551 1111111455555443 45566666553210 012457889999999999998887
Q ss_pred -----cCcEEEecccc
Q psy1304 125 -----KCRVILNCVGP 135 (184)
Q Consensus 125 -----~~dVVIN~aGP 135 (184)
+.|+|||++|-
T Consensus 78 ~~~~~~id~vi~~ag~ 93 (258)
T PRK08628 78 VAKFGRIDGLVNNAGV 93 (258)
T ss_pred HHhcCCCCEEEECCcc
Confidence 47999999994
No 123
>PRK06194 hypothetical protein; Provisional
Probab=93.28 E-value=0.088 Score=43.92 Aligned_cols=59 Identities=12% Similarity=0.120 Sum_probs=40.8
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc-------CCCCCCEEEEeCCCHHHHHHHhhc-------CcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE-------NLIDIPIIIADLKNESSILIMAKK-------CRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~-------~~~~v~~v~vDv~D~~sL~a~l~~-------~dVVIN~aGPf 136 (184)
++.+|++. + .++.+.+|+.+.... ...++.++.+|+.|++++++++++ .|+|||++|..
T Consensus 22 la~~l~~~--G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~id~vi~~Ag~~ 94 (287)
T PRK06194 22 FARIGAAL--G--MKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFGAVHLLFNNAGVG 94 (287)
T ss_pred HHHHHHHC--C--CEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 55555544 3 567777775422110 113467799999999999999885 69999999864
No 124
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=93.27 E-value=0.25 Score=41.26 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=36.4
Q ss_pred EEeCCCHHHHHHHhhc--CcEEEeccccccc------c-----------chHHHHHHHHcCCC-Eee
Q psy1304 110 IADLKNESSILIMAKK--CRVILNCVGPYTW------Y-----------GEAVVKACIEAKTH-HVD 156 (184)
Q Consensus 110 ~vDv~D~~sL~a~l~~--~dVVIN~aGPf~~------~-----------g~~VaeACieAGth-YVD 156 (184)
.+|+.|.+++.++++. +|+|||||+++.. . ...++++|.+.|+. +|=
T Consensus 32 ~~Dl~~~~~l~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~ 98 (306)
T PLN02725 32 ELDLTRQADVEAFFAKEKPTYVILAAAKVGGIHANMTYPADFIRENLQIQTNVIDAAYRHGVKKLLF 98 (306)
T ss_pred cCCCCCHHHHHHHHhccCCCEEEEeeeeecccchhhhCcHHHHHHHhHHHHHHHHHHHHcCCCeEEE
Confidence 4799999999999885 6999999986421 0 15699999999974 553
No 125
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=93.25 E-value=0.055 Score=44.40 Aligned_cols=77 Identities=13% Similarity=0.138 Sum_probs=48.5
Q ss_pred cccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeeccccccc-------CCCCCCEEEEeCCCHHHHHHHhhc
Q psy1304 53 FRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRE-------NLIDIPIIIADLKNESSILIMAKK 125 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~-------~~~~v~~v~vDv~D~~sL~a~l~~ 125 (184)
|.||++-|.|- ..+--..++.+|++. + .+|.+.+|+...... ...++.++.+|+.|++++++++++
T Consensus 8 ~~~k~vlItGa---~g~iG~~ia~~l~~~--G--~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~ 80 (255)
T PRK07523 8 LTGRRALVTGS---SQGIGYALAEGLAQA--G--AEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDA 80 (255)
T ss_pred CCCCEEEEECC---cchHHHHHHHHHHHc--C--CEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHH
Confidence 56676666651 111111145555543 4 677787776532111 113467889999999999999875
Q ss_pred -------CcEEEeccccc
Q psy1304 126 -------CRVILNCVGPY 136 (184)
Q Consensus 126 -------~dVVIN~aGPf 136 (184)
.|+|||++|..
T Consensus 81 ~~~~~~~~d~li~~ag~~ 98 (255)
T PRK07523 81 FEAEIGPIDILVNNAGMQ 98 (255)
T ss_pred HHHhcCCCCEEEECCCCC
Confidence 69999999864
No 126
>PRK05693 short chain dehydrogenase; Provisional
Probab=93.25 E-value=0.14 Score=42.60 Aligned_cols=58 Identities=10% Similarity=0.059 Sum_probs=39.9
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc-CCCCCCEEEEeCCCHHHHHHHhh-------cCcEEEecccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE-NLIDIPIIIADLKNESSILIMAK-------KCRVILNCVGP 135 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~-~~~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGP 135 (184)
++..|++. + .++.+.+|+...... ......++.+|+.|+++++++++ +.|+|||++|.
T Consensus 17 la~~l~~~--G--~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 82 (274)
T PRK05693 17 LADAFKAA--G--YEVWATARKAEDVEALAAAGFTAVQLDVNDGAALARLAEELEAEHGGLDVLINNAGY 82 (274)
T ss_pred HHHHHHHC--C--CEEEEEeCCHHHHHHHHHCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 55666554 3 567777776532111 11346789999999999988875 46999999994
No 127
>PRK07577 short chain dehydrogenase; Provisional
Probab=93.22 E-value=0.26 Score=39.51 Aligned_cols=55 Identities=15% Similarity=-0.001 Sum_probs=39.6
Q ss_pred hhhhhhhCCCCCceeEEeeeecccccccCCCCCCEEEEeCCCHHHHHHHhh------cCcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRENLIDIPIIIADLKNESSILIMAK------KCRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~~~~~v~~v~vDv~D~~sL~a~l~------~~dVVIN~aGPf 136 (184)
++.+|++.. .++.+.+|+.... ...+++.+|+.|+++++++++ +.|+||||+|.+
T Consensus 19 ia~~l~~~G----~~v~~~~r~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 79 (234)
T PRK07577 19 LSLRLANLG----HQVIGIARSAIDD----FPGELFACDLADIEQTAATLAQINEIHPVDAIVNNVGIA 79 (234)
T ss_pred HHHHHHHCC----CEEEEEeCCcccc----cCceEEEeeCCCHHHHHHHHHHHHHhCCCcEEEECCCCC
Confidence 555555443 5677777765431 123688999999999988887 579999999965
No 128
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=93.21 E-value=0.091 Score=46.26 Aligned_cols=61 Identities=11% Similarity=0.088 Sum_probs=44.2
Q ss_pred hhhhhhhCCCCCceeEEeeeecccccccCC-----CCCCEEEEeCCCHHHHHHHhh-------cCcEEEeccccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRENL-----IDIPIIIADLKNESSILIMAK-------KCRVILNCVGPYTW 138 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~~~-----~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGPf~~ 138 (184)
++..|+... .++.|+|||.+.-++.. .....+.+|+.|+++++++++ +.|++||-||-+..
T Consensus 22 ~A~~l~~~G----~~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iDiLvNNAGl~~g 94 (246)
T COG4221 22 TARALAEAG----AKVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRIDILVNNAGLALG 94 (246)
T ss_pred HHHHHHHCC----CeEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCcccEEEecCCCCcC
Confidence 444454444 79999999886322111 357799999999999877776 58999999996644
No 129
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=93.16 E-value=0.099 Score=48.35 Aligned_cols=79 Identities=9% Similarity=0.104 Sum_probs=50.7
Q ss_pred ccCccccceeeecccccCCCCCCCchhhhhhhC--CCCCceeEEeeeeccccccc----CCCCCCEEEEeCCCHHHHHHH
Q psy1304 49 ESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADA--PTSNLTRLGLLGARDCLYRE----NLIDIPIIIADLKNESSILIM 122 (184)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~--~~~~~~~iaLAGrr~~lg~~----~~~~v~~v~vDv~D~~sL~a~ 122 (184)
+.-.++||+.-|.|- ..| |-.++++. ..+ .++.+.+|+.+.... ....+..+.+|+.|++++.+.
T Consensus 172 ta~sl~gK~VLITGA---SgG----IG~aLA~~La~~G--~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~~~v~~~ 242 (406)
T PRK07424 172 TALSLKGKTVAVTGA---SGT----LGQALLKELHQQG--AKVVALTSNSDKITLEINGEDLPVKTLHWQVGQEAALAEL 242 (406)
T ss_pred cccCCCCCEEEEeCC---CCH----HHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCHHHHHHH
Confidence 334567787777661 122 44555532 124 567666665432111 112356788999999999999
Q ss_pred hhcCcEEEeccccc
Q psy1304 123 AKKCRVILNCVGPY 136 (184)
Q Consensus 123 l~~~dVVIN~aGPf 136 (184)
+.+.|++||++|..
T Consensus 243 l~~IDiLInnAGi~ 256 (406)
T PRK07424 243 LEKVDILIINHGIN 256 (406)
T ss_pred hCCCCEEEECCCcC
Confidence 99999999999854
No 130
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=93.16 E-value=0.22 Score=42.07 Aligned_cols=89 Identities=12% Similarity=0.142 Sum_probs=58.1
Q ss_pred ccccCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeeccccc----------------c-cCC-CCCCE
Q psy1304 47 IGESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLY----------------R-ENL-IDIPI 108 (184)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg----------------~-~~~-~~v~~ 108 (184)
|.+.++|-|+. ++..|.+..+. .+|....|+.... . ... .++.+
T Consensus 4 vtGatG~lG~~----------------l~~~L~~~g~~--~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~ 65 (367)
T TIGR01746 4 LTGATGFLGAY----------------LLEELLRRSTQ--AKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEV 65 (367)
T ss_pred EeccchHHHHH----------------HHHHHHhCCCC--CEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEE
Confidence 35667777776 67777766544 4555555543210 0 000 46788
Q ss_pred EEEeCCC------HHHHHHHhhcCcEEEecccccccc-------------chHHHHHHHHcCCC
Q psy1304 109 IIADLKN------ESSILIMAKKCRVILNCVGPYTWY-------------GEAVVKACIEAKTH 153 (184)
Q Consensus 109 v~vDv~D------~~sL~a~l~~~dVVIN~aGPf~~~-------------g~~VaeACieAGth 153 (184)
+..|+.+ .+.+..+.+++|+||||+|+.... ...++++|.+.++.
T Consensus 66 ~~~D~~~~~~gl~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~nv~g~~~ll~~a~~~~~~ 129 (367)
T TIGR01746 66 VAGDLSEPRLGLSDAEWERLAENVDTIVHNGALVNWVYPYSELRAANVLGTREVLRLAASGRAK 129 (367)
T ss_pred EeCCcCcccCCcCHHHHHHHHhhCCEEEeCCcEeccCCcHHHHhhhhhHHHHHHHHHHhhCCCc
Confidence 8889864 457788889999999999864311 15678899888765
No 131
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=93.12 E-value=0.13 Score=42.20 Aligned_cols=58 Identities=19% Similarity=0.138 Sum_probs=40.6
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc----CCCCCCEEEEeCCCHHHHHHHhh-------cCcEEEecccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE----NLIDIPIIIADLKNESSILIMAK-------KCRVILNCVGP 135 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~----~~~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGP 135 (184)
++.+|++. + .++.+.+|+...... ...++.++.+|+.|++++.++++ +.|+|||++|.
T Consensus 16 la~~l~~~--G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~~ag~ 84 (248)
T PRK10538 16 ITRRFIQQ--G--HKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDVLVNNAGL 84 (248)
T ss_pred HHHHHHHC--C--CEEEEEECCHHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 55566554 3 567777776532110 11357889999999999988876 68999999985
No 132
>PRK06125 short chain dehydrogenase; Provisional
Probab=93.10 E-value=0.17 Score=41.66 Aligned_cols=77 Identities=14% Similarity=0.228 Sum_probs=50.0
Q ss_pred cccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeeccccccc--------CCCCCCEEEEeCCCHHHHHHHhh
Q psy1304 53 FRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRE--------NLIDIPIIIADLKNESSILIMAK 124 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~--------~~~~v~~v~vDv~D~~sL~a~l~ 124 (184)
++||+.-|.|- +++--.-++..|++. + .++.+.+|+.+.... ...++.++.+|+.|++++.++++
T Consensus 5 ~~~k~vlItG~---~~giG~~ia~~l~~~--G--~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~ 77 (259)
T PRK06125 5 LAGKRVLITGA---SKGIGAAAAEAFAAE--G--CHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAA 77 (259)
T ss_pred CCCCEEEEeCC---CchHHHHHHHHHHHc--C--CEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHH
Confidence 56777777662 233111255555554 4 678888876542211 12357789999999999988776
Q ss_pred ---cCcEEEeccccc
Q psy1304 125 ---KCRVILNCVGPY 136 (184)
Q Consensus 125 ---~~dVVIN~aGPf 136 (184)
+.|++|||+|..
T Consensus 78 ~~g~id~lv~~ag~~ 92 (259)
T PRK06125 78 EAGDIDILVNNAGAI 92 (259)
T ss_pred HhCCCCEEEECCCCC
Confidence 489999999853
No 133
>PRK07814 short chain dehydrogenase; Provisional
Probab=93.08 E-value=0.14 Score=42.41 Aligned_cols=76 Identities=20% Similarity=0.223 Sum_probs=47.3
Q ss_pred cccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeeccccccc-------CCCCCCEEEEeCCCHHHHHHHhh-
Q psy1304 53 FRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRE-------NLIDIPIIIADLKNESSILIMAK- 124 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~-------~~~~v~~v~vDv~D~~sL~a~l~- 124 (184)
++||+.-|-|- +++---.++.+|++. + .++.+.+|+.+...+ ...++.++.+|+.|++++.++++
T Consensus 8 ~~~~~vlItGa---sggIG~~~a~~l~~~--G--~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 80 (263)
T PRK07814 8 LDDQVAVVTGA---GRGLGAAIALAFAEA--G--ADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQ 80 (263)
T ss_pred CCCCEEEEECC---CChHHHHHHHHHHHC--C--CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 56666666551 122001144445443 3 577777776532111 11356788999999999988776
Q ss_pred ------cCcEEEecccc
Q psy1304 125 ------KCRVILNCVGP 135 (184)
Q Consensus 125 ------~~dVVIN~aGP 135 (184)
+.|+|||++|.
T Consensus 81 ~~~~~~~id~vi~~Ag~ 97 (263)
T PRK07814 81 AVEAFGRLDIVVNNVGG 97 (263)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 57999999985
No 134
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=93.07 E-value=0.1 Score=43.19 Aligned_cols=75 Identities=15% Similarity=0.138 Sum_probs=47.5
Q ss_pred cccceeeecccccCCCCCCCchhhhhhhC--CCCCceeEEeeeeccccc-----ccCCCCCCEEEEeCCCHHHHHHHhhc
Q psy1304 53 FRGQTLSVQDKIRPGRGSNPRPSAYKADA--PTSNLTRLGLLGARDCLY-----RENLIDIPIIIADLKNESSILIMAKK 125 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~r~~~~La~~--~~~~~~~iaLAGrr~~lg-----~~~~~~v~~v~vDv~D~~sL~a~l~~ 125 (184)
+.||+.-|.|- .+| |-.++++. -.+ .++.+.+|++... .....++.++.+|+.|++++.++++.
T Consensus 6 l~~k~~lItGa---s~g----IG~aia~~l~~~G--~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 76 (251)
T PRK12481 6 LNGKVAIITGC---NTG----LGQGMAIGLAKAG--ADIVGVGVAEAPETQAQVEALGRKFHFITADLIQQKDIDSIVSQ 76 (251)
T ss_pred cCCCEEEEeCC---Cch----HHHHHHHHHHHCC--CEEEEecCchHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHH
Confidence 55676666551 122 44444421 123 6777777754211 01114577899999999999998873
Q ss_pred -------CcEEEeccccc
Q psy1304 126 -------CRVILNCVGPY 136 (184)
Q Consensus 126 -------~dVVIN~aGPf 136 (184)
.|++||++|.+
T Consensus 77 ~~~~~g~iD~lv~~ag~~ 94 (251)
T PRK12481 77 AVEVMGHIDILINNAGII 94 (251)
T ss_pred HHHHcCCCCEEEECCCcC
Confidence 69999999964
No 135
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.05 E-value=0.067 Score=42.98 Aligned_cols=59 Identities=15% Similarity=0.155 Sum_probs=40.0
Q ss_pred hhhhhhhCCCCCceeEEee-eeccccccc-------CCCCCCEEEEeCCCHHHHHHHhh-------cCcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLL-GARDCLYRE-------NLIDIPIIIADLKNESSILIMAK-------KCRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLA-Grr~~lg~~-------~~~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGPf 136 (184)
++.+|++. + .++.+. +|+...... ...++.++.+|+.|++++.++++ +.|+||+++|+.
T Consensus 21 la~~l~~~--g--~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 94 (247)
T PRK05565 21 IAELLAKE--G--AKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEKFGKIDILVNNAGIS 94 (247)
T ss_pred HHHHHHHC--C--CEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCCcC
Confidence 44455543 3 566666 665432110 11347789999999999998887 689999999975
No 136
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=93.03 E-value=0.079 Score=46.83 Aligned_cols=66 Identities=20% Similarity=0.233 Sum_probs=45.4
Q ss_pred hhhhhhhCCCCCceeEEeeeecccccccC--------CCCCCEEEEeCCCHHHHHHHhh-------cCcEEEeccccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYREN--------LIDIPIIIADLKNESSILIMAK-------KCRVILNCVGPYTW 138 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~~--------~~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGPf~~ 138 (184)
|-..+|+....+--.+.|-+|++++-.+. ...+.++.+|+.|++++..+.. ..|++||+|| |..
T Consensus 18 IG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~~~IdvLVNNAG-~g~ 96 (265)
T COG0300 18 IGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERGGPIDVLVNNAG-FGT 96 (265)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcCCcccEEEECCC-cCC
Confidence 44555543333336788888987632211 1346799999999999998876 5899999998 544
Q ss_pred cc
Q psy1304 139 YG 140 (184)
Q Consensus 139 ~g 140 (184)
++
T Consensus 97 ~g 98 (265)
T COG0300 97 FG 98 (265)
T ss_pred cc
Confidence 44
No 137
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=93.02 E-value=0.12 Score=42.70 Aligned_cols=77 Identities=12% Similarity=0.096 Sum_probs=47.8
Q ss_pred ccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeeccccccc--------CCCCCCEEEEeCCCHHHHHHHh
Q psy1304 52 PFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRE--------NLIDIPIIIADLKNESSILIMA 123 (184)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~--------~~~~v~~v~vDv~D~~sL~a~l 123 (184)
.++||++-|-|--. +--.-++.+|++.. .++.+.+|++..... ...++.++.+|+.|++++.+++
T Consensus 4 ~~~~k~~lItGa~~---gIG~~ia~~l~~~G----~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~ 76 (261)
T PRK08936 4 DLEGKVVVITGGST---GLGRAMAVRFGKEK----AKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLI 76 (261)
T ss_pred CCCCCEEEEeCCCC---hHHHHHHHHHHHCC----CEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHH
Confidence 46777777766211 10111445555443 567777774421100 1134668899999999999887
Q ss_pred h-------cCcEEEecccc
Q psy1304 124 K-------KCRVILNCVGP 135 (184)
Q Consensus 124 ~-------~~dVVIN~aGP 135 (184)
+ ..|++||++|.
T Consensus 77 ~~~~~~~g~id~lv~~ag~ 95 (261)
T PRK08936 77 QTAVKEFGTLDVMINNAGI 95 (261)
T ss_pred HHHHHHcCCCCEEEECCCC
Confidence 6 36999999995
No 138
>PRK06114 short chain dehydrogenase; Provisional
Probab=93.00 E-value=0.13 Score=42.28 Aligned_cols=77 Identities=19% Similarity=0.152 Sum_probs=46.8
Q ss_pred cccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccc--------cCCCCCCEEEEeCCCHHHHHHHhh
Q psy1304 53 FRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYR--------ENLIDIPIIIADLKNESSILIMAK 124 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~--------~~~~~v~~v~vDv~D~~sL~a~l~ 124 (184)
++||+.-|-|- .+|---.++..|++. + .++.+.+|+..... ....++.++.+|+.|++++.++++
T Consensus 6 ~~~k~~lVtG~---s~gIG~~ia~~l~~~--G--~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~ 78 (254)
T PRK06114 6 LDGQVAFVTGA---GSGIGQRIAIGLAQA--G--ADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVA 78 (254)
T ss_pred CCCCEEEEECC---CchHHHHHHHHHHHC--C--CEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 45666655551 122011144444443 3 56777777543110 011356789999999999998887
Q ss_pred c-------CcEEEeccccc
Q psy1304 125 K-------CRVILNCVGPY 136 (184)
Q Consensus 125 ~-------~dVVIN~aGPf 136 (184)
. .|+||||+|..
T Consensus 79 ~~~~~~g~id~li~~ag~~ 97 (254)
T PRK06114 79 RTEAELGALTLAVNAAGIA 97 (254)
T ss_pred HHHHHcCCCCEEEECCCCC
Confidence 5 49999999964
No 139
>PLN02686 cinnamoyl-CoA reductase
Probab=92.98 E-value=0.15 Score=45.44 Aligned_cols=48 Identities=21% Similarity=0.326 Sum_probs=38.4
Q ss_pred CCCEEEEeCCCHHHHHHHhhcCcEEEeccccccccc----------------hHHHHHHHHc-CC
Q psy1304 105 DIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYG----------------EAVVKACIEA-KT 152 (184)
Q Consensus 105 ~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~g----------------~~VaeACieA-Gt 152 (184)
++.++..|+.|++++.++++++|.|++++++....+ .+++++|.+. |+
T Consensus 108 ~~~~v~~Dl~d~~~l~~~i~~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v 172 (367)
T PLN02686 108 GIWTVMANLTEPESLHEAFDGCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESV 172 (367)
T ss_pred ceEEEEcCCCCHHHHHHHHHhccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCc
Confidence 467889999999999999999999999998642211 4589999875 44
No 140
>PRK05650 short chain dehydrogenase; Provisional
Probab=92.96 E-value=0.18 Score=41.84 Aligned_cols=59 Identities=22% Similarity=0.067 Sum_probs=41.9
Q ss_pred hhhhhhhCCCCCceeEEeeeecccccc-------cCCCCCCEEEEeCCCHHHHHHHhh-------cCcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYR-------ENLIDIPIIIADLKNESSILIMAK-------KCRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~-------~~~~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGPf 136 (184)
++..|++. + .++.+.+|+.+... ....++.++++|+.|++++.++++ +.|+|||++|+.
T Consensus 16 la~~l~~~--g--~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~lI~~ag~~ 88 (270)
T PRK05650 16 IALRWARE--G--WRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGIDVIVNNAGVA 88 (270)
T ss_pred HHHHHHHC--C--CEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 55666654 3 56777777553211 012457789999999999988876 589999999965
No 141
>PRK08226 short chain dehydrogenase; Provisional
Probab=92.95 E-value=0.17 Score=41.61 Aligned_cols=58 Identities=17% Similarity=0.198 Sum_probs=40.9
Q ss_pred hhhhhhhCCCCCceeEEeeeecccccc------cCCCCCCEEEEeCCCHHHHHHHhhc-------CcEEEecccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYR------ENLIDIPIIIADLKNESSILIMAKK-------CRVILNCVGP 135 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~------~~~~~v~~v~vDv~D~~sL~a~l~~-------~dVVIN~aGP 135 (184)
++.+|++. + .++.+.+|+..... ....++.++++|+.|+++++++++. .|+|||++|.
T Consensus 22 la~~l~~~--G--~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~id~vi~~ag~ 92 (263)
T PRK08226 22 IARVFARH--G--ANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEGRIDILVNNAGV 92 (263)
T ss_pred HHHHHHHC--C--CEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 56666654 3 67888887653211 0113467899999999999998774 6999999995
No 142
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=92.92 E-value=0.2 Score=43.26 Aligned_cols=45 Identities=4% Similarity=0.021 Sum_probs=36.5
Q ss_pred CCCEEEEeCCCHHHHHHHhhc--CcEEEecccccccc----------------chHHHHHHHH
Q psy1304 105 DIPIIIADLKNESSILIMAKK--CRVILNCVGPYTWY----------------GEAVVKACIE 149 (184)
Q Consensus 105 ~v~~v~vDv~D~~sL~a~l~~--~dVVIN~aGPf~~~----------------g~~VaeACie 149 (184)
.++++.+|+.|++++.+++++ +|.||||+|+.... -..++++|.+
T Consensus 52 ~~~~~~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~ 114 (355)
T PRK10217 52 RFAFEKVDICDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARA 114 (355)
T ss_pred ceEEEECCCcChHHHHHHHhhcCCCEEEECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHH
Confidence 467889999999999999985 89999999975321 1568888876
No 143
>PRK06841 short chain dehydrogenase; Provisional
Probab=92.90 E-value=0.091 Score=42.86 Aligned_cols=77 Identities=13% Similarity=0.120 Sum_probs=47.8
Q ss_pred cccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeeccccccc----CCCCCCEEEEeCCCHHHHHHHhhc---
Q psy1304 53 FRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRE----NLIDIPIIIADLKNESSILIMAKK--- 125 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~----~~~~v~~v~vDv~D~~sL~a~l~~--- 125 (184)
.+||++-|.| .+..|..++++..-..-.++.+.+|+...... ...+..++.+|+.|++++.+++++
T Consensus 13 ~~~k~vlItG-------as~~IG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 85 (255)
T PRK06841 13 LSGKVAVVTG-------GASGIGHAIAELFAAKGARVALLDRSEDVAEVAAQLLGGNAKGLVCDVSDSQSVEAAVAAVIS 85 (255)
T ss_pred CCCCEEEEEC-------CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 4567766665 11235555553222111577777776542110 113456899999999999988864
Q ss_pred ----CcEEEeccccc
Q psy1304 126 ----CRVILNCVGPY 136 (184)
Q Consensus 126 ----~dVVIN~aGPf 136 (184)
.|+|||++|..
T Consensus 86 ~~~~~d~vi~~ag~~ 100 (255)
T PRK06841 86 AFGRIDILVNSAGVA 100 (255)
T ss_pred HhCCCCEEEECCCCC
Confidence 69999999864
No 144
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.90 E-value=0.14 Score=42.81 Aligned_cols=78 Identities=15% Similarity=0.102 Sum_probs=48.0
Q ss_pred cccceeeecccccCCCCCCCchhhhhhhCC--CCCceeEEeeeeccccc---c---cCCCCCCEEEEeCCCHHHHHHHhh
Q psy1304 53 FRGQTLSVQDKIRPGRGSNPRPSAYKADAP--TSNLTRLGLLGARDCLY---R---ENLIDIPIIIADLKNESSILIMAK 124 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~r~~~~La~~~--~~~~~~iaLAGrr~~lg---~---~~~~~v~~v~vDv~D~~sL~a~l~ 124 (184)
++||+.-|.|- ++...|-.++|+.. .+ .++.+.+|++... . ...+....+++|+.|+++++++++
T Consensus 4 ~~~k~~lITGa-----~~~~GIG~a~a~~l~~~G--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 76 (261)
T PRK08690 4 LQGKKILITGM-----ISERSIAYGIAKACREQG--AELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFA 76 (261)
T ss_pred cCCcEEEEECC-----CCCCcHHHHHHHHHHHCC--CEEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHH
Confidence 57787777661 11122555555322 33 6777776543111 0 011334578999999999998875
Q ss_pred -------cCcEEEecccccc
Q psy1304 125 -------KCRVILNCVGPYT 137 (184)
Q Consensus 125 -------~~dVVIN~aGPf~ 137 (184)
+.|++||++|...
T Consensus 77 ~~~~~~g~iD~lVnnAG~~~ 96 (261)
T PRK08690 77 DLGKHWDGLDGLVHSIGFAP 96 (261)
T ss_pred HHHHHhCCCcEEEECCccCC
Confidence 4799999999653
No 145
>PRK05875 short chain dehydrogenase; Provisional
Probab=92.90 E-value=0.13 Score=42.73 Aligned_cols=58 Identities=14% Similarity=0.145 Sum_probs=39.7
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc------C---CCCCCEEEEeCCCHHHHHHHhh-------cCcEEEecccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE------N---LIDIPIIIADLKNESSILIMAK-------KCRVILNCVGP 135 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~------~---~~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGP 135 (184)
++.+|++.. .++.+.+|+.+.... . ..++.++.+|+.|++++.++++ +.|+|||++|.
T Consensus 23 la~~l~~~G----~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~li~~ag~ 96 (276)
T PRK05875 23 VAAGLVAAG----AAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWHGRLHGVVHCAGG 96 (276)
T ss_pred HHHHHHHCC----CeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 555565543 567777765422110 0 1356788899999999998887 57999999984
No 146
>PLN02583 cinnamoyl-CoA reductase
Probab=92.87 E-value=0.43 Score=40.84 Aligned_cols=85 Identities=15% Similarity=0.160 Sum_probs=57.3
Q ss_pred cccccCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccc-------cc-c-CCCCCCEEEEeCCCH
Q psy1304 46 RIGESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCL-------YR-E-NLIDIPIIIADLKNE 116 (184)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~l-------g~-~-~~~~v~~v~vDv~D~ 116 (184)
.|-+.++|-|+- ++.+|.+.. -++.+..|+... .. . ...+++++++|+.|+
T Consensus 10 lVTGatG~IG~~----------------lv~~Ll~~G----~~V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~ 69 (297)
T PLN02583 10 CVMDASGYVGFW----------------LVKRLLSRG----YTVHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPLDY 69 (297)
T ss_pred EEECCCCHHHHH----------------HHHHHHhCC----CEEEEEEcCchhhhHHHHHHhcccCCCceEEEEecCCCH
Confidence 445666777766 667777644 344444453110 10 0 113578899999999
Q ss_pred HHHHHHhhcCcEEEecccccccc--------------chHHHHHHHHc
Q psy1304 117 SSILIMAKKCRVILNCVGPYTWY--------------GEAVVKACIEA 150 (184)
Q Consensus 117 ~sL~a~l~~~dVVIN~aGPf~~~--------------g~~VaeACieA 150 (184)
+++..++.+++.|+++++|.... -..++++|.+.
T Consensus 70 ~~~~~~l~~~d~v~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~ 117 (297)
T PLN02583 70 HSILDALKGCSGLFCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQT 117 (297)
T ss_pred HHHHHHHcCCCEEEEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999988775421 16789999886
No 147
>PRK08263 short chain dehydrogenase; Provisional
Probab=92.85 E-value=0.093 Score=43.83 Aligned_cols=59 Identities=7% Similarity=0.058 Sum_probs=40.8
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc----CCCCCCEEEEeCCCHHHHHHHhhc-------CcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE----NLIDIPIIIADLKNESSILIMAKK-------CRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~----~~~~v~~v~vDv~D~~sL~a~l~~-------~dVVIN~aGPf 136 (184)
++.+|++. + .++.+.+|+.+.... ....+.++++|+.|++++.+++++ .|+||||+|..
T Consensus 19 ~a~~l~~~--g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 88 (275)
T PRK08263 19 WTEAALER--G--DRVVATARDTATLADLAEKYGDRLLPLALDVTDRAAVFAAVETAVEHFGRLDIVVNNAGYG 88 (275)
T ss_pred HHHHHHHC--C--CEEEEEECCHHHHHHHHHhccCCeeEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCc
Confidence 45555543 3 567777776532210 124577889999999999888774 69999999965
No 148
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=92.82 E-value=0.14 Score=44.26 Aligned_cols=57 Identities=18% Similarity=0.126 Sum_probs=42.6
Q ss_pred HhhcCcEEEeccccccccchHHHHHHHHcCCCEee-CCCChHHHHHHHHHhHHHHHHcCCeee
Q psy1304 122 MAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVD-ITGEPYFMEYMQYEYNTRAQESEVQKC 183 (184)
Q Consensus 122 ~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVD-ltGE~~~~~~ii~~lhe~AkaaGV~Iv 183 (184)
+...+|+||.|..|-.. ...++.|+++|+|.|- .+|- ..+...++.+.|+++|++++
T Consensus 65 l~~~~DvVIdfT~p~~~--~~~~~~al~~g~~vVigttg~---~~e~~~~l~~aA~~~g~~v~ 122 (266)
T TIGR00036 65 VETDPDVLIDFTTPEGV--LNHLKFALEHGVRLVVGTTGF---SEEDKQELADLAEKAGIAAV 122 (266)
T ss_pred hcCCCCEEEECCChHHH--HHHHHHHHHCCCCEEEECCCC---CHHHHHHHHHHHhcCCccEE
Confidence 34679999999977543 5899999999999774 5553 33333678888999887765
No 149
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=92.82 E-value=0.11 Score=42.93 Aligned_cols=59 Identities=8% Similarity=0.040 Sum_probs=40.7
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc---C-CCCCCEEEEeCCCHHHHHHHhhc-------CcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE---N-LIDIPIIIADLKNESSILIMAKK-------CRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~---~-~~~v~~v~vDv~D~~sL~a~l~~-------~dVVIN~aGPf 136 (184)
++..|++. + .++.+.+|+.+...+ . ..++.++.+|+.|.+++.++++. .|++||++|.+
T Consensus 21 ia~~l~~~--G--~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~~Ag~~ 90 (262)
T TIGR03325 21 IVDRFVAE--G--ARVAVLDKSAAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVAAFGKIDCLIPNAGIW 90 (262)
T ss_pred HHHHHHHC--C--CEEEEEeCCHHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 55555554 3 677777876532111 1 13577899999999998887764 69999999864
No 150
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.81 E-value=0.1 Score=44.12 Aligned_cols=78 Identities=14% Similarity=0.079 Sum_probs=47.3
Q ss_pred cccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccc------cCCCCCCEEEEeCCCHHHHHHHhhc-
Q psy1304 53 FRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYR------ENLIDIPIIIADLKNESSILIMAKK- 125 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~------~~~~~v~~v~vDv~D~~sL~a~l~~- 125 (184)
++||+.-|.|--+ |||----++..|++.. .++.+.+|++.+.. ...+...++.+|+.|+++++++++.
T Consensus 4 l~~k~~lITGas~-~~GIG~aia~~la~~G----~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 78 (262)
T PRK07984 4 LSGKRILVTGVAS-KLSIAYGIAQAMHREG----AELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAEL 78 (262)
T ss_pred cCCCEEEEeCCCC-CccHHHHHHHHHHHCC----CEEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHH
Confidence 5678777766211 1220011444454443 56777777532110 1123456788999999999988853
Q ss_pred ------CcEEEecccc
Q psy1304 126 ------CRVILNCVGP 135 (184)
Q Consensus 126 ------~dVVIN~aGP 135 (184)
.|++||++|-
T Consensus 79 ~~~~g~iD~linnAg~ 94 (262)
T PRK07984 79 GKVWPKFDGFVHSIGF 94 (262)
T ss_pred HhhcCCCCEEEECCcc
Confidence 6999999984
No 151
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=92.79 E-value=0.12 Score=41.53 Aligned_cols=60 Identities=5% Similarity=-0.012 Sum_probs=41.5
Q ss_pred hhhhhhhCCCCCceeEEeeeecccccc-------cCCCCCCEEEEeCCCHHHHHHHhh-------cCcEEEecccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYR-------ENLIDIPIIIADLKNESSILIMAK-------KCRVILNCVGPYT 137 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~-------~~~~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGPf~ 137 (184)
++.+|++.. .+|.+.+|+..... ....++.++.+|+.|++++.++++ .+|+|||++|.+.
T Consensus 22 l~~~l~~~g----~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~ 95 (251)
T PRK12826 22 IAVRLAADG----AEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFGRLDILVANAGIFP 95 (251)
T ss_pred HHHHHHHCC----CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCCCCC
Confidence 556666543 45666667632111 011347889999999999999886 5899999998764
No 152
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=92.78 E-value=0.37 Score=41.93 Aligned_cols=60 Identities=10% Similarity=0.073 Sum_probs=43.9
Q ss_pred HHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEeeCCCChHHHHHHHHHhHHHHHHcCCeee
Q psy1304 119 ILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVQKC 183 (184)
Q Consensus 119 L~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltGE~~~~~~ii~~lhe~AkaaGV~Iv 183 (184)
++++++++|+|+-|+++... ..+++.|+++|.|.+..+ ..-..+. .++.+.|+++|+.+.
T Consensus 61 ~eell~~~D~Vvi~tp~~~h--~e~~~~aL~aGk~Vi~~s--~gal~~~-~~L~~~A~~~g~~l~ 120 (271)
T PRK13302 61 LDQLATHADIVVEAAPASVL--RAIVEPVLAAGKKAIVLS--VGALLRN-EDLIDLARQNGGQII 120 (271)
T ss_pred HHHHhcCCCEEEECCCcHHH--HHHHHHHHHcCCcEEEec--chhHHhH-HHHHHHHHHcCCEEE
Confidence 45567889999999976543 688899999999977653 2212233 578889999998763
No 153
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.78 E-value=0.18 Score=42.14 Aligned_cols=77 Identities=14% Similarity=0.124 Sum_probs=47.3
Q ss_pred cccceeeecccccCCCCCCCchhhhhhhCC--CCCceeEEeeeeccccc---c---cC--CCCCCEEEEeCCCHHHHHHH
Q psy1304 53 FRGQTLSVQDKIRPGRGSNPRPSAYKADAP--TSNLTRLGLLGARDCLY---R---EN--LIDIPIIIADLKNESSILIM 122 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~r~~~~La~~~--~~~~~~iaLAGrr~~lg---~---~~--~~~v~~v~vDv~D~~sL~a~ 122 (184)
++||+.-|.|-- ++..|-.++|+.. .+ .++.+.+|+.... + .. ..++.++++|+.|+++++++
T Consensus 5 ~~~k~~lItGa~-----~s~GIG~aia~~la~~G--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~ 77 (257)
T PRK08594 5 LEGKTYVVMGVA-----NKRSIAWGIARSLHNAG--AKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITAC 77 (257)
T ss_pred cCCCEEEEECCC-----CCCCHHHHHHHHHHHCC--CEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHH
Confidence 678887777621 0122445555321 23 6777877642110 0 01 13567889999999999888
Q ss_pred hh-------cCcEEEeccccc
Q psy1304 123 AK-------KCRVILNCVGPY 136 (184)
Q Consensus 123 l~-------~~dVVIN~aGPf 136 (184)
++ ..|++|||+|-+
T Consensus 78 ~~~~~~~~g~ld~lv~nag~~ 98 (257)
T PRK08594 78 FETIKEEVGVIHGVAHCIAFA 98 (257)
T ss_pred HHHHHHhCCCccEEEECcccC
Confidence 75 369999999843
No 154
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=92.72 E-value=0.14 Score=42.13 Aligned_cols=79 Identities=15% Similarity=0.138 Sum_probs=49.0
Q ss_pred CccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccc------cCCCCCCEEEEeCCCHHHHHHHhh
Q psy1304 51 QPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYR------ENLIDIPIIIADLKNESSILIMAK 124 (184)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~------~~~~~v~~v~vDv~D~~sL~a~l~ 124 (184)
..++||+.-|.|- +.+--.-++.+|++. + .++.+.+|++.... ....++.++++|+.|++++.++++
T Consensus 11 ~~l~~k~vlItGa---s~gIG~~ia~~l~~~--G--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~ 83 (258)
T PRK06935 11 FSLDGKVAIVTGG---NTGLGQGYAVALAKA--G--ADIIITTHGTNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVK 83 (258)
T ss_pred ccCCCCEEEEeCC---CchHHHHHHHHHHHC--C--CEEEEEeCCcHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 3456666666651 122111155555544 3 56777776532110 011457789999999999999988
Q ss_pred -------cCcEEEeccccc
Q psy1304 125 -------KCRVILNCVGPY 136 (184)
Q Consensus 125 -------~~dVVIN~aGPf 136 (184)
..|++||++|..
T Consensus 84 ~~~~~~g~id~li~~ag~~ 102 (258)
T PRK06935 84 EALEEFGKIDILVNNAGTI 102 (258)
T ss_pred HHHHHcCCCCEEEECCCCC
Confidence 569999999864
No 155
>PRK05872 short chain dehydrogenase; Provisional
Probab=92.72 E-value=0.095 Score=44.75 Aligned_cols=78 Identities=14% Similarity=0.209 Sum_probs=47.8
Q ss_pred ccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeeccccccc------CCCCCCEEEEeCCCHHHHHHHhh-
Q psy1304 52 PFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRE------NLIDIPIIIADLKNESSILIMAK- 124 (184)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~------~~~~v~~v~vDv~D~~sL~a~l~- 124 (184)
.++||+.-|.|- .+|----++.+|++. + .++.+.+|+.+.... ....+..+.+|+.|+++++++++
T Consensus 6 ~l~gk~vlItGa---s~gIG~~ia~~l~~~--G--~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~ 78 (296)
T PRK05872 6 SLAGKVVVVTGA---ARGIGAELARRLHAR--G--AKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEE 78 (296)
T ss_pred CCCCCEEEEECC---CchHHHHHHHHHHHC--C--CEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHH
Confidence 467777777661 122011144444443 4 678888886532110 01234456699999999988875
Q ss_pred ------cCcEEEeccccc
Q psy1304 125 ------KCRVILNCVGPY 136 (184)
Q Consensus 125 ------~~dVVIN~aGPf 136 (184)
..|+|||++|..
T Consensus 79 ~~~~~g~id~vI~nAG~~ 96 (296)
T PRK05872 79 AVERFGGIDVVVANAGIA 96 (296)
T ss_pred HHHHcCCCCEEEECCCcC
Confidence 469999999964
No 156
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.69 E-value=0.099 Score=42.41 Aligned_cols=59 Identities=12% Similarity=-0.062 Sum_probs=39.2
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc-------CCCCCCEEEEeCCCHHHHHHHhhc-------CcEEEecccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE-------NLIDIPIIIADLKNESSILIMAKK-------CRVILNCVGP 135 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~-------~~~~v~~v~vDv~D~~sL~a~l~~-------~dVVIN~aGP 135 (184)
++.+|++.... +- .+..|+.....+ ...++.++.+|+.|++++.+++++ .|+|||++|+
T Consensus 20 ~a~~l~~~g~~--v~-~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 92 (250)
T PRK08063 20 IALRLAEEGYD--IA-VNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEFGRLDVFVNNAAS 92 (250)
T ss_pred HHHHHHHCCCE--EE-EEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 67777765433 22 233454432111 114577899999999999988874 6999999985
No 157
>PRK06181 short chain dehydrogenase; Provisional
Probab=92.67 E-value=0.2 Score=41.16 Aligned_cols=60 Identities=12% Similarity=0.112 Sum_probs=40.5
Q ss_pred hhhhhhhCCCCCceeEEeeeecccccc-------cCCCCCCEEEEeCCCHHHHHHHhh-------cCcEEEecccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYR-------ENLIDIPIIIADLKNESSILIMAK-------KCRVILNCVGPYT 137 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~-------~~~~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGPf~ 137 (184)
++.+|++. + .++.+.+|+..... ....++.++.+|+.|++++.++++ +.|+||||+|+..
T Consensus 17 la~~l~~~--g--~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~ 90 (263)
T PRK06181 17 LAVRLARA--G--AQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGIDILVNNAGITM 90 (263)
T ss_pred HHHHHHHC--C--CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCccc
Confidence 44555533 3 46667766543211 012357788999999999998887 5799999999754
No 158
>PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=92.67 E-value=0.14 Score=42.18 Aligned_cols=54 Identities=19% Similarity=0.025 Sum_probs=39.4
Q ss_pred hhhhhhCCCCCceeEEeeeecccccccCCCCCCEEEEeCCCHHHHHHHhhc----CcEEEeccccc
Q psy1304 75 SAYKADAPTSNLTRLGLLGARDCLYRENLIDIPIIIADLKNESSILIMAKK----CRVILNCVGPY 136 (184)
Q Consensus 75 ~~~La~~~~~~~~~iaLAGrr~~lg~~~~~~v~~v~vDv~D~~sL~a~l~~----~dVVIN~aGPf 136 (184)
+..|++.. .++.+.+|+.... ....++++|+.|.+++.++++. .|+|||++|..
T Consensus 2 a~~l~~~G----~~Vv~~~r~~~~~----~~~~~~~~Dl~~~~~v~~~~~~~~~~iD~li~nAG~~ 59 (241)
T PRK12428 2 ARLLRFLG----ARVIGVDRREPGM----TLDGFIQADLGDPASIDAAVAALPGRIDALFNIAGVP 59 (241)
T ss_pred hHHHHhCC----CEEEEEeCCcchh----hhhHhhcccCCCHHHHHHHHHHhcCCCeEEEECCCCC
Confidence 34555533 5677777765432 1246789999999999999874 79999999964
No 159
>PRK08589 short chain dehydrogenase; Validated
Probab=92.62 E-value=0.13 Score=43.03 Aligned_cols=77 Identities=12% Similarity=0.121 Sum_probs=48.0
Q ss_pred cccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccc------cCCCCCCEEEEeCCCHHHHHHHhhc-
Q psy1304 53 FRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYR------ENLIDIPIIIADLKNESSILIMAKK- 125 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~------~~~~~v~~v~vDv~D~~sL~a~l~~- 125 (184)
++||+.-|.|- .+|----++.+|++. + .++.+.+|++.+.. ....++.++.+|+.|++++.++++.
T Consensus 4 l~~k~vlItGa---s~gIG~aia~~l~~~--G--~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 76 (272)
T PRK08589 4 LENKVAVITGA---STGIGQASAIALAQE--G--AYVLAVDIAEAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEI 76 (272)
T ss_pred CCCCEEEEECC---CchHHHHHHHHHHHC--C--CEEEEEeCcHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHH
Confidence 56676666652 122011144445544 3 67788887632211 0113578899999999999888764
Q ss_pred ------CcEEEeccccc
Q psy1304 126 ------CRVILNCVGPY 136 (184)
Q Consensus 126 ------~dVVIN~aGPf 136 (184)
.|++||++|..
T Consensus 77 ~~~~g~id~li~~Ag~~ 93 (272)
T PRK08589 77 KEQFGRVDVLFNNAGVD 93 (272)
T ss_pred HHHcCCcCEEEECCCCC
Confidence 69999999854
No 160
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=92.60 E-value=1.2 Score=36.27 Aligned_cols=90 Identities=18% Similarity=0.112 Sum_probs=63.3
Q ss_pred cccCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccccCCCCCCEEEEeCCCHHHHHHHhhcCc
Q psy1304 48 GESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRENLIDIPIIIADLKNESSILIMAKKCR 127 (184)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~~~~~v~~v~vDv~D~~sL~a~l~~~d 127 (184)
.+-++|-|+- ++..|.+. + -++..+.|+.+........+++...|..|+.++...+++.+
T Consensus 6 ~GatG~~G~~----------------~~~~L~~~--~--~~v~~~~r~~~~~~~~~~~v~~~~~d~~~~~~l~~a~~G~~ 65 (275)
T COG0702 6 TGATGFVGGA----------------VVRELLAR--G--HEVRAAVRNPEAAAALAGGVEVVLGDLRDPKSLVAGAKGVD 65 (275)
T ss_pred EecccchHHH----------------HHHHHHhC--C--CEEEEEEeCHHHHHhhcCCcEEEEeccCCHhHHHHHhcccc
Confidence 4556666666 77888866 3 45666666655433222679999999999999999999999
Q ss_pred EEEecccccc-------ccchHHHHHHHHcC---CCEeeC
Q psy1304 128 VILNCVGPYT-------WYGEAVVKACIEAK---THHVDI 157 (184)
Q Consensus 128 VVIN~aGPf~-------~~g~~VaeACieAG---thYVDl 157 (184)
.++++.+... .....+++++..++ .|++.+
T Consensus 66 ~~~~i~~~~~~~~~~~~~~~~~~~~~a~~a~~~~~~~~~~ 105 (275)
T COG0702 66 GVLLISGLLDGSDAFRAVQVTAVVRAAEAAGAGVKHGVSL 105 (275)
T ss_pred EEEEEecccccccchhHHHHHHHHHHHHHhcCCceEEEEe
Confidence 9999998442 22356667777766 446553
No 161
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=92.58 E-value=0.17 Score=40.94 Aligned_cols=59 Identities=12% Similarity=0.016 Sum_probs=41.2
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc-------CCCCCCEEEEeCCCHHHHHHHhh-------cCcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE-------NLIDIPIIIADLKNESSILIMAK-------KCRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~-------~~~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGPf 136 (184)
++.+|++. + .++.+.+|+...... ...++.++.+|+.|++++.++++ +.|+||+++|..
T Consensus 20 la~~l~~~--g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~vi~~a~~~ 92 (258)
T PRK12429 20 IALALAKE--G--AKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFGGVDILVNNAGIQ 92 (258)
T ss_pred HHHHHHHC--C--CeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 55566544 3 567777776532211 11457789999999999998887 479999999854
No 162
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=92.56 E-value=0.14 Score=41.47 Aligned_cols=100 Identities=14% Similarity=0.109 Sum_probs=59.1
Q ss_pred cccceeeecccccCCCCCC-CchhhhhhhCCCCCceeEEeeeecccccccC------CCCCCEEEEeCCCHHHHHHHhhc
Q psy1304 53 FRGQTLSVQDKIRPGRGSN-PRPSAYKADAPTSNLTRLGLLGARDCLYREN------LIDIPIIIADLKNESSILIMAKK 125 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~-~r~~~~La~~~~~~~~~iaLAGrr~~lg~~~------~~~v~~v~vDv~D~~sL~a~l~~ 125 (184)
++|+++.|-| |.|.- ..++.+|++. + .++.+.+|+.+..... ....+...+|..|.+++.+.+++
T Consensus 26 l~~~~vlVlG----gtG~iG~~~a~~l~~~--g--~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (194)
T cd01078 26 LKGKTAVVLG----GTGPVGQRAAVLLARE--G--ARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKG 97 (194)
T ss_pred CCCCEEEEEC----CCCHHHHHHHHHHHHC--C--CEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhc
Confidence 5566655554 11211 1256666654 3 4677777765432110 12456777899999999999999
Q ss_pred CcEEEeccccccccchHHHHHHHHcCCCEeeCCCCh
Q psy1304 126 CRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEP 161 (184)
Q Consensus 126 ~dVVIN~aGPf~~~g~~VaeACieAGthYVDltGE~ 161 (184)
+|+||||. |.........+.+.+.+.-.+|+.--+
T Consensus 98 ~diVi~at-~~g~~~~~~~~~~~~~~~vv~D~~~~~ 132 (194)
T cd01078 98 ADVVFAAG-AAGVELLEKLAWAPKPLAVAADVNAVP 132 (194)
T ss_pred CCEEEECC-CCCceechhhhcccCceeEEEEccCCC
Confidence 99999985 665442233333444456677765433
No 163
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=92.53 E-value=0.14 Score=47.04 Aligned_cols=94 Identities=13% Similarity=0.120 Sum_probs=58.5
Q ss_pred cccccCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccccCC-CCCCEEEEeCCCHHHHHHH-h
Q psy1304 46 RIGESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRENL-IDIPIIIADLKNESSILIM-A 123 (184)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~~~-~~v~~v~vDv~D~~sL~a~-l 123 (184)
.|.+.+++.|+. +...|+.+ |. .+|.+..+++..|..-. ........|..+.++++.. +
T Consensus 42 aIvGATG~vG~e----------------LlrlL~~h-P~--~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~ 102 (381)
T PLN02968 42 FVLGASGYTGAE----------------VRRLLANH-PD--FEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADF 102 (381)
T ss_pred EEECCCChHHHH----------------HHHHHHhC-CC--CeEEEEEChhhcCCCchhhCccccCccccceecCCHHHh
Confidence 458888888887 77878866 67 77777666555443211 1111222233222222222 4
Q ss_pred hcCcEEEeccccccccchHHHHHHHHcCCCEeeCCCCh
Q psy1304 124 KKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEP 161 (184)
Q Consensus 124 ~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltGE~ 161 (184)
+++|+|+.|+|. .....++.+ ++.|+..||++++.
T Consensus 103 ~~~DvVf~Alp~--~~s~~i~~~-~~~g~~VIDlSs~f 137 (381)
T PLN02968 103 SDVDAVFCCLPH--GTTQEIIKA-LPKDLKIVDLSADF 137 (381)
T ss_pred cCCCEEEEcCCH--HHHHHHHHH-HhCCCEEEEcCchh
Confidence 899999999863 344677777 47899999999854
No 164
>PRK06139 short chain dehydrogenase; Provisional
Probab=92.49 E-value=0.24 Score=43.77 Aligned_cols=58 Identities=17% Similarity=0.205 Sum_probs=40.1
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc-------CCCCCCEEEEeCCCHHHHHHHhh-------cCcEEEecccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE-------NLIDIPIIIADLKNESSILIMAK-------KCRVILNCVGP 135 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~-------~~~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGP 135 (184)
++..|++. + .++.+.+|+++...+ ...++.++.+|+.|+++++++++ +.|++||++|-
T Consensus 23 ia~~la~~--G--~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG~ 94 (330)
T PRK06139 23 TAEAFARR--G--ARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGRIDVWVNNVGV 94 (330)
T ss_pred HHHHHHHC--C--CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 44445444 3 678888886542210 11356688999999999998874 57999999983
No 165
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=92.48 E-value=0.17 Score=41.08 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=27.7
Q ss_pred CCCCEEEEeCCCHHHHHHHhh-------cCcEEEeccccc
Q psy1304 104 IDIPIIIADLKNESSILIMAK-------KCRVILNCVGPY 136 (184)
Q Consensus 104 ~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGPf 136 (184)
.++.++.+|+.|++++.++++ ..|+|||++|..
T Consensus 52 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li~~ag~~ 91 (248)
T PRK06947 52 GRACVVAGDVANEADVIAMFDAVQSAFGRLDALVNNAGIV 91 (248)
T ss_pred CcEEEEEeccCCHHHHHHHHHHHHHhcCCCCEEEECCccC
Confidence 357899999999999887775 479999999954
No 166
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=92.42 E-value=0.064 Score=42.82 Aligned_cols=59 Identities=8% Similarity=0.129 Sum_probs=41.0
Q ss_pred hhhhhhhCCCCCceeEEeeeecccccc-------cCCCCCCEEEEeCCCHHHHHHHhhc-------CcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYR-------ENLIDIPIIIADLKNESSILIMAKK-------CRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~-------~~~~~v~~v~vDv~D~~sL~a~l~~-------~dVVIN~aGPf 136 (184)
++.+|++.. .++.+.+|+..... ....++.++.+|+.|++++.+++++ .|.|||++|..
T Consensus 21 l~~~l~~~g----~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 93 (246)
T PRK05653 21 IALRLAADG----AKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAFGALDILVNNAGIT 93 (246)
T ss_pred HHHHHHHCC----CEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCCcC
Confidence 677777653 34666666543211 0124577888999999999888875 49999999764
No 167
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=92.41 E-value=0.13 Score=42.81 Aligned_cols=59 Identities=15% Similarity=0.177 Sum_probs=40.6
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc-------CCCCCCEEEEeCCCHHHHHHHhh-------cCcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE-------NLIDIPIIIADLKNESSILIMAK-------KCRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~-------~~~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGPf 136 (184)
++..|++. + .++.+.+|+.+.... ...++.++++|+.|++++.++++ +.|+|||++|..
T Consensus 26 ia~~l~~~--G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~id~li~~ag~~ 98 (278)
T PRK08277 26 MAKELARA--G--AKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDFGPCDILINGAGGN 98 (278)
T ss_pred HHHHHHHC--C--CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 55555543 3 577888876532111 11356788999999999988876 579999999954
No 168
>PRK08278 short chain dehydrogenase; Provisional
Probab=92.40 E-value=0.3 Score=40.99 Aligned_cols=58 Identities=7% Similarity=0.007 Sum_probs=39.7
Q ss_pred hhhhhhhCCCCCceeEEeeeecccccc--------------cCCCCCCEEEEeCCCHHHHHHHhh-------cCcEEEec
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYR--------------ENLIDIPIIIADLKNESSILIMAK-------KCRVILNC 132 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~--------------~~~~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~ 132 (184)
++.+|++.. .++.+.+|+..... ..-.++.++.+|+.|++++.++++ +.|+|||+
T Consensus 22 ia~~l~~~G----~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~id~li~~ 97 (273)
T PRK08278 22 IALRAARDG----ANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVAKAVERFGGIDICVNN 97 (273)
T ss_pred HHHHHHHCC----CEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEEC
Confidence 555565443 56777777543210 011346688999999999998877 57999999
Q ss_pred ccc
Q psy1304 133 VGP 135 (184)
Q Consensus 133 aGP 135 (184)
+|.
T Consensus 98 ag~ 100 (273)
T PRK08278 98 ASA 100 (273)
T ss_pred CCC
Confidence 985
No 169
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=92.40 E-value=0.061 Score=41.35 Aligned_cols=59 Identities=14% Similarity=0.085 Sum_probs=38.2
Q ss_pred HHHHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEe-eCCCChHHHHHHHHHhHHHHHHcCC
Q psy1304 117 SSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHV-DITGEPYFMEYMQYEYNTRAQESEV 180 (184)
Q Consensus 117 ~sL~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYV-DltGE~~~~~~ii~~lhe~AkaaGV 180 (184)
.++++++..+|+||.+.-|-. ....++.|++.|++.| =.||-.+. + +..+.+.|++.++
T Consensus 59 ~~l~~~~~~~DVvIDfT~p~~--~~~~~~~~~~~g~~~ViGTTG~~~~--~-~~~l~~~a~~~~v 118 (124)
T PF01113_consen 59 DDLEELLEEADVVIDFTNPDA--VYDNLEYALKHGVPLVIGTTGFSDE--Q-IDELEELAKKIPV 118 (124)
T ss_dssp S-HHHHTTH-SEEEEES-HHH--HHHHHHHHHHHT-EEEEE-SSSHHH--H-HHHHHHHTTTSEE
T ss_pred hhHHHhcccCCEEEEcCChHH--hHHHHHHHHhCCCCEEEECCCCCHH--H-HHHHHHHhccCCE
Confidence 468889989999999986643 3589999999999965 36665443 2 2456666666333
No 170
>PRK06101 short chain dehydrogenase; Provisional
Probab=92.38 E-value=0.16 Score=41.54 Aligned_cols=58 Identities=10% Similarity=0.046 Sum_probs=41.5
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc---CCCCCCEEEEeCCCHHHHHHHhhc----CcEEEecccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE---NLIDIPIIIADLKNESSILIMAKK----CRVILNCVGP 135 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~---~~~~v~~v~vDv~D~~sL~a~l~~----~dVVIN~aGP 135 (184)
++..|++. + .++.+.+|+.+...+ ...++.++++|+.|++++++++++ .|.+||++|.
T Consensus 17 la~~L~~~--G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i~~ag~ 81 (240)
T PRK06101 17 LALDYAKQ--G--WQVIACGRNQSVLDELHTQSANIFTLAFDVTDHPGTKAALSQLPFIPELWIFNAGD 81 (240)
T ss_pred HHHHHHhC--C--CEEEEEECCHHHHHHHHHhcCCCeEEEeeCCCHHHHHHHHHhcccCCCEEEEcCcc
Confidence 66666654 4 677788886543211 124678999999999999999987 4788888874
No 171
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=92.38 E-value=0.3 Score=44.75 Aligned_cols=85 Identities=12% Similarity=0.134 Sum_probs=63.9
Q ss_pred hhhhhhhCCCCC----ceeEEeeeeccccccc-CCCCCCEEEEeCCCHHHHHHHhh--cCcEEEeccc------------
Q psy1304 74 PSAYKADAPTSN----LTRLGLLGARDCLYRE-NLIDIPIIIADLKNESSILIMAK--KCRVILNCVG------------ 134 (184)
Q Consensus 74 ~~~~La~~~~~~----~~~iaLAGrr~~lg~~-~~~~v~~v~vDv~D~~sL~a~l~--~~dVVIN~aG------------ 134 (184)
.+.|+.+..|+- .=|+.-||+.+.+..- ..++..+++.|+.|.+.+.++++ +.|+|||-|-
T Consensus 16 fvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~VvhfAAESHVDRSI~~P~ 95 (340)
T COG1088 16 FVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDAVVHFAAESHVDRSIDGPA 95 (340)
T ss_pred HHHHHHhcCCCceEEEEecccccCCHHHHHhhhcCCCceEEeccccCHHHHHHHHHhcCCCeEEEechhccccccccChh
Confidence 678888777763 1177788877655321 22689999999999999999999 5899999763
Q ss_pred cccccc----hHHHHHHHHcCC--CEeeCC
Q psy1304 135 PYTWYG----EAVVKACIEAKT--HHVDIT 158 (184)
Q Consensus 135 Pf~~~g----~~VaeACieAGt--hYVDlt 158 (184)
||.+++ .++++|+.+... .|++++
T Consensus 96 ~Fi~TNv~GT~~LLEaar~~~~~frf~HIS 125 (340)
T COG1088 96 PFIQTNVVGTYTLLEAARKYWGKFRFHHIS 125 (340)
T ss_pred hhhhcchHHHHHHHHHHHHhcccceEEEec
Confidence 455554 688999988885 577766
No 172
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=92.36 E-value=0.28 Score=39.16 Aligned_cols=59 Identities=10% Similarity=-0.045 Sum_probs=39.3
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccc--------ccCCCCCCEEEEeCCCHHHHHHHhh-------cCcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLY--------RENLIDIPIIIADLKNESSILIMAK-------KCRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg--------~~~~~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGPf 136 (184)
++.+|++. + -++.+.+|+.... .....++.++.+|+.|++++.++++ +.|.||+++|..
T Consensus 21 l~~~l~~~--G--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 94 (248)
T PRK05557 21 IAERLAAQ--G--ANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAEFGGVDILVNNAGIT 94 (248)
T ss_pred HHHHHHHC--C--CEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 55566654 3 4565555554311 0012456788889999999988876 479999999864
No 173
>PLN02778 3,5-epimerase/4-reductase
Probab=92.35 E-value=0.3 Score=42.29 Aligned_cols=74 Identities=14% Similarity=0.072 Sum_probs=50.2
Q ss_pred ccccCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccccCCCCCCEEEEeCCCHHHHHHHhh--
Q psy1304 47 IGESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRENLIDIPIIIADLKNESSILIMAK-- 124 (184)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~~~~~v~~v~vDv~D~~sL~a~l~-- 124 (184)
|.+.++|=|.. ++.+|....-+ +.+ ...|+.|.+.+...++
T Consensus 14 VtG~tGfiG~~----------------l~~~L~~~g~~----V~~-----------------~~~~~~~~~~v~~~l~~~ 56 (298)
T PLN02778 14 IYGKTGWIGGL----------------LGKLCQEQGID----FHY-----------------GSGRLENRASLEADIDAV 56 (298)
T ss_pred EECCCCHHHHH----------------HHHHHHhCCCE----EEE-----------------ecCccCCHHHHHHHHHhc
Confidence 37888898888 67777765433 221 1134567777777777
Q ss_pred cCcEEEeccccccc-----c--------------chHHHHHHHHcCCCEeeC
Q psy1304 125 KCRVILNCVGPYTW-----Y--------------GEAVVKACIEAKTHHVDI 157 (184)
Q Consensus 125 ~~dVVIN~aGPf~~-----~--------------g~~VaeACieAGthYVDl 157 (184)
++|+||||||+... . ...++++|.+.|++.+-+
T Consensus 57 ~~D~ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~~v~~ 108 (298)
T PLN02778 57 KPTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLVLTNY 108 (298)
T ss_pred CCCEEEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 68999999997521 0 157899999999875433
No 174
>PRK07806 short chain dehydrogenase; Provisional
Probab=92.34 E-value=0.26 Score=39.97 Aligned_cols=33 Identities=15% Similarity=0.079 Sum_probs=27.5
Q ss_pred CCCCEEEEeCCCHHHHHHHhh-------cCcEEEeccccc
Q psy1304 104 IDIPIIIADLKNESSILIMAK-------KCRVILNCVGPY 136 (184)
Q Consensus 104 ~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGPf 136 (184)
.++.++++|+.|++++.++++ +.|+|||++|..
T Consensus 56 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 95 (248)
T PRK07806 56 GRASAVGADLTDEESVAALMDTAREEFGGLDALVLNASGG 95 (248)
T ss_pred CceEEEEcCCCCHHHHHHHHHHHHHhCCCCcEEEECCCCC
Confidence 346788999999999988876 479999999854
No 175
>PRK05855 short chain dehydrogenase; Validated
Probab=92.33 E-value=0.11 Score=47.10 Aligned_cols=79 Identities=15% Similarity=0.108 Sum_probs=51.3
Q ss_pred CccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeeccccccc-------CCCCCCEEEEeCCCHHHHHHHh
Q psy1304 51 QPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRE-------NLIDIPIIIADLKNESSILIMA 123 (184)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~-------~~~~v~~v~vDv~D~~sL~a~l 123 (184)
..|++++.-|-|- .+| |..++++.....--++.+.+|+.....+ ...++.++.+|+.|++++.+++
T Consensus 311 ~~~~~~~~lv~G~---s~g----iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~ 383 (582)
T PRK05855 311 GPFSGKLVVVTGA---GSG----IGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFA 383 (582)
T ss_pred ccCCCCEEEEECC---cCH----HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHH
Confidence 4567777766651 122 5555553222211578888886532211 1135678999999999999988
Q ss_pred hc-------CcEEEeccccc
Q psy1304 124 KK-------CRVILNCVGPY 136 (184)
Q Consensus 124 ~~-------~dVVIN~aGPf 136 (184)
+. .|+|||++|..
T Consensus 384 ~~~~~~~g~id~lv~~Ag~~ 403 (582)
T PRK05855 384 EWVRAEHGVPDIVVNNAGIG 403 (582)
T ss_pred HHHHHhcCCCcEEEECCccC
Confidence 75 69999999975
No 176
>PRK06198 short chain dehydrogenase; Provisional
Probab=92.31 E-value=0.21 Score=40.88 Aligned_cols=77 Identities=14% Similarity=0.100 Sum_probs=46.4
Q ss_pred cccceeeecccccCCCCCCCchhhhhhhCCCCCcee-EEeeeecccccc-------cCCCCCCEEEEeCCCHHHHHHHhh
Q psy1304 53 FRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTR-LGLLGARDCLYR-------ENLIDIPIIIADLKNESSILIMAK 124 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~-iaLAGrr~~lg~-------~~~~~v~~v~vDv~D~~sL~a~l~ 124 (184)
++||++-|.|- ..+---.++.+|++. + .+ |.+.+|+.+... ....++.++.+|+.|++++.++++
T Consensus 4 ~~~k~vlItGa---~g~iG~~la~~l~~~--G--~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 76 (260)
T PRK06198 4 LDGKVALVTGG---TQGLGAAIARAFAER--G--AAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVA 76 (260)
T ss_pred CCCcEEEEeCC---CchHHHHHHHHHHHC--C--CCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHH
Confidence 56666666551 122111133444433 2 45 777777643221 011346678999999999988876
Q ss_pred -------cCcEEEeccccc
Q psy1304 125 -------KCRVILNCVGPY 136 (184)
Q Consensus 125 -------~~dVVIN~aGPf 136 (184)
+.|++|||+|..
T Consensus 77 ~~~~~~g~id~li~~ag~~ 95 (260)
T PRK06198 77 AADEAFGRLDALVNAAGLT 95 (260)
T ss_pred HHHHHhCCCCEEEECCCcC
Confidence 479999999863
No 177
>PRK07109 short chain dehydrogenase; Provisional
Probab=92.27 E-value=0.14 Score=44.95 Aligned_cols=59 Identities=12% Similarity=0.031 Sum_probs=41.2
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc-------CCCCCCEEEEeCCCHHHHHHHhh-------cCcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE-------NLIDIPIIIADLKNESSILIMAK-------KCRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~-------~~~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGPf 136 (184)
++.+|++. + .++.+.+|+.+...+ ...++.++.+|+.|+++++++++ +.|++||++|..
T Consensus 24 la~~la~~--G--~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~iD~lInnAg~~ 96 (334)
T PRK07109 24 TARAFARR--G--AKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELGPIDTWVNNAMVT 96 (334)
T ss_pred HHHHHHHC--C--CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCCCCCEEEECCCcC
Confidence 55555554 3 577787776532111 11356789999999999998876 579999999853
No 178
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=92.26 E-value=0.19 Score=40.83 Aligned_cols=77 Identities=16% Similarity=0.122 Sum_probs=46.7
Q ss_pred cccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeeccccc-----ccCCCCCCEEEEeCCCHHHHHHHhh---
Q psy1304 53 FRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLY-----RENLIDIPIIIADLKNESSILIMAK--- 124 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg-----~~~~~~v~~v~vDv~D~~sL~a~l~--- 124 (184)
|+||++-|-|- +.+----++.+|++. + .++.+.+|+.... ......+.++.+|+.|++++.++++
T Consensus 3 ~~~k~vlItGa---s~gIG~~ia~~l~~~--G--~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (248)
T TIGR01832 3 LEGKVALVTGA---NTGLGQGIAVGLAEA--G--ADIVGAGRSEPSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAV 75 (248)
T ss_pred CCCCEEEEECC---CchHHHHHHHHHHHC--C--CEEEEEcCchHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHH
Confidence 66777776651 111000134444443 3 5677777754110 0011357789999999999987775
Q ss_pred ----cCcEEEeccccc
Q psy1304 125 ----KCRVILNCVGPY 136 (184)
Q Consensus 125 ----~~dVVIN~aGPf 136 (184)
+.|++||++|-.
T Consensus 76 ~~~~~~d~li~~ag~~ 91 (248)
T TIGR01832 76 EEFGHIDILVNNAGII 91 (248)
T ss_pred HHcCCCCEEEECCCCC
Confidence 489999999853
No 179
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=92.22 E-value=0.24 Score=40.58 Aligned_cols=75 Identities=19% Similarity=0.237 Sum_probs=45.4
Q ss_pred cccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccc------cCCCCCCEEEEeCCCHHHHHHHhh--
Q psy1304 53 FRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYR------ENLIDIPIIIADLKNESSILIMAK-- 124 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~------~~~~~v~~v~vDv~D~~sL~a~l~-- 124 (184)
++||+.-|.|- .++--.-++.+|++. + .++.+.+|++.... ....++.++.+|+.|++++.++++
T Consensus 6 ~~~k~vlVtGa---s~gIG~~la~~l~~~--G--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 78 (260)
T PRK12823 6 FAGKVVVVTGA---AQGIGRGVALRAAAE--G--ARVVLVDRSELVHEVAAELRAAGGEALALTADLETYAGAQAAMAAA 78 (260)
T ss_pred cCCCEEEEeCC---CchHHHHHHHHHHHC--C--CEEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHH
Confidence 56666666551 112001144445443 3 56777777642210 011346688999999999888877
Q ss_pred -----cCcEEEeccc
Q psy1304 125 -----KCRVILNCVG 134 (184)
Q Consensus 125 -----~~dVVIN~aG 134 (184)
+.|++||++|
T Consensus 79 ~~~~~~id~lv~nAg 93 (260)
T PRK12823 79 VEAFGRIDVLINNVG 93 (260)
T ss_pred HHHcCCCeEEEECCc
Confidence 4799999997
No 180
>PRK09134 short chain dehydrogenase; Provisional
Probab=92.21 E-value=0.19 Score=41.41 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=28.1
Q ss_pred CCCCEEEEeCCCHHHHHHHhhc-------CcEEEeccccc
Q psy1304 104 IDIPIIIADLKNESSILIMAKK-------CRVILNCVGPY 136 (184)
Q Consensus 104 ~~v~~v~vDv~D~~sL~a~l~~-------~dVVIN~aGPf 136 (184)
.++.++.+|+.|.+++.+++++ .|+||||+|+.
T Consensus 59 ~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~iD~vi~~ag~~ 98 (258)
T PRK09134 59 RRAVALQADLADEAEVRALVARASAALGPITLLVNNASLF 98 (258)
T ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCcCC
Confidence 3577899999999999998875 59999999964
No 181
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=92.15 E-value=0.4 Score=42.76 Aligned_cols=91 Identities=12% Similarity=0.036 Sum_probs=60.6
Q ss_pred cccccCccccceeeecccccCCCCCCCchhhhhhhC-CCCCceeEEeeeecccccccC-CCCCCEEEEeCCCHHHHHHHh
Q psy1304 46 RIGESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADA-PTSNLTRLGLLGARDCLYREN-LIDIPIIIADLKNESSILIMA 123 (184)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~-~~~~~~~iaLAGrr~~lg~~~-~~~v~~v~vDv~D~~sL~a~l 123 (184)
.|.+.+++.|+. ++..|++. .|. .++....+++..+... ....+....|+++. .+
T Consensus 5 ~IvGAtG~vG~~----------------l~~lL~~~~hp~--~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~-----~~ 61 (334)
T PRK14874 5 AVVGATGAVGRE----------------MLNILEERNFPV--DKLRLLASARSAGKELSFKGKELKVEDLTTF-----DF 61 (334)
T ss_pred EEECCCCHHHHH----------------HHHHHHhCCCCc--ceEEEEEccccCCCeeeeCCceeEEeeCCHH-----HH
Confidence 357888888888 77888853 455 4555554544433321 12345555566432 23
Q ss_pred hcCcEEEeccccccccchHHHHHHHHcCCCEeeCCCCh
Q psy1304 124 KKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEP 161 (184)
Q Consensus 124 ~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltGE~ 161 (184)
+++|+|+.|+|-+ ....++...+++|+.-||++++.
T Consensus 62 ~~vDvVf~A~g~g--~s~~~~~~~~~~G~~VIDlS~~~ 97 (334)
T PRK14874 62 SGVDIALFSAGGS--VSKKYAPKAAAAGAVVIDNSSAF 97 (334)
T ss_pred cCCCEEEECCChH--HHHHHHHHHHhCCCEEEECCchh
Confidence 6899999999754 34678888889999999999864
No 182
>PRK07576 short chain dehydrogenase; Provisional
Probab=92.11 E-value=0.11 Score=43.28 Aligned_cols=74 Identities=12% Similarity=0.068 Sum_probs=46.5
Q ss_pred cccceeeecccccCCCCCCCchhhhhhhCC--CCCceeEEeeeeccccccc-------CCCCCCEEEEeCCCHHHHHHHh
Q psy1304 53 FRGQTLSVQDKIRPGRGSNPRPSAYKADAP--TSNLTRLGLLGARDCLYRE-------NLIDIPIIIADLKNESSILIMA 123 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~r~~~~La~~~--~~~~~~iaLAGrr~~lg~~-------~~~~v~~v~vDv~D~~sL~a~l 123 (184)
++||++-|-|- .++ |..++++.. .+ .++.+.+|+.+.... ...+..++.+|+.|++++.+++
T Consensus 7 ~~~k~ilItGa---sgg----IG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~ 77 (264)
T PRK07576 7 FAGKNVVVVGG---TSG----INLGIAQAFARAG--ANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAF 77 (264)
T ss_pred CCCCEEEEECC---Cch----HHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHH
Confidence 56777666651 112 445444211 24 677777775432110 1134567899999999999988
Q ss_pred hc-------CcEEEecccc
Q psy1304 124 KK-------CRVILNCVGP 135 (184)
Q Consensus 124 ~~-------~dVVIN~aGP 135 (184)
++ .|+|||++|.
T Consensus 78 ~~~~~~~~~iD~vi~~ag~ 96 (264)
T PRK07576 78 AQIADEFGPIDVLVSGAAG 96 (264)
T ss_pred HHHHHHcCCCCEEEECCCC
Confidence 75 5999999974
No 183
>PRK08017 oxidoreductase; Provisional
Probab=92.08 E-value=1.2 Score=36.18 Aligned_cols=58 Identities=16% Similarity=0.035 Sum_probs=38.3
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc-CCCCCCEEEEeCCCHHHHHHHhhc--------CcEEEecccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE-NLIDIPIIIADLKNESSILIMAKK--------CRVILNCVGP 135 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~-~~~~v~~v~vDv~D~~sL~a~l~~--------~dVVIN~aGP 135 (184)
++.+|++.. .++.+.+|+.+..+. ....+.++++|+.|.+++..++++ .|.+||++|.
T Consensus 18 la~~l~~~g----~~v~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~ii~~ag~ 84 (256)
T PRK08017 18 AALELKRRG----YRVLAACRKPDDVARMNSLGFTGILLDLDDPESVERAADEVIALTDNRLYGLFNNAGF 84 (256)
T ss_pred HHHHHHHCC----CEEEEEeCCHHHhHHHHhCCCeEEEeecCCHHHHHHHHHHHHHhcCCCCeEEEECCCC
Confidence 667776553 456666676533211 112478899999999988776543 5899999984
No 184
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.05 E-value=0.2 Score=41.23 Aligned_cols=32 Identities=9% Similarity=-0.051 Sum_probs=27.1
Q ss_pred CCCEEEEeCCCHHHHHHHhhc-------CcEEEeccccc
Q psy1304 105 DIPIIIADLKNESSILIMAKK-------CRVILNCVGPY 136 (184)
Q Consensus 105 ~v~~v~vDv~D~~sL~a~l~~-------~dVVIN~aGPf 136 (184)
++.++.+|+.|++++.++++. .|+|||++|.+
T Consensus 68 ~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~vi~~ag~~ 106 (256)
T PRK12748 68 RCEHMEIDLSQPYAPNRVFYAVSERLGDPSILINNAAYS 106 (256)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHhCCCCCEEEECCCcC
Confidence 578999999999998887764 69999999853
No 185
>PRK06914 short chain dehydrogenase; Provisional
Probab=92.04 E-value=0.14 Score=42.48 Aligned_cols=59 Identities=14% Similarity=0.041 Sum_probs=39.7
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc--------C-CCCCCEEEEeCCCHHHHHHHhh-------cCcEEEecccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE--------N-LIDIPIIIADLKNESSILIMAK-------KCRVILNCVGPYT 137 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~--------~-~~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGPf~ 137 (184)
++..|++. + .++.+.+|+.+.... . ..++.++.+|+.|++++++ ++ +.|+||||+|...
T Consensus 19 la~~l~~~--G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~~~~~~id~vv~~ag~~~ 93 (280)
T PRK06914 19 TTLELAKK--G--YLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHN-FQLVLKEIGRIDLLVNNAGYAN 93 (280)
T ss_pred HHHHHHhC--C--CEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHH-HHHHHHhcCCeeEEEECCcccc
Confidence 66667655 3 567777775431110 0 1357889999999999876 44 3699999998643
No 186
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.04 E-value=0.23 Score=41.55 Aligned_cols=76 Identities=16% Similarity=0.048 Sum_probs=45.8
Q ss_pred cccceeeecccccCCCCCCCchhhhhhhC--CCCCceeEEeeeecccccc------cCCCCCCEEEEeCCCHHHHHHHhh
Q psy1304 53 FRGQTLSVQDKIRPGRGSNPRPSAYKADA--PTSNLTRLGLLGARDCLYR------ENLIDIPIIIADLKNESSILIMAK 124 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~r~~~~La~~--~~~~~~~iaLAGrr~~lg~------~~~~~v~~v~vDv~D~~sL~a~l~ 124 (184)
++||+.-|.|--+ +.-|-.++|+. -.+ .++.+.+|++...+ ...+...++++|+.|+++++++++
T Consensus 6 ~~~k~~lITGas~-----~~GIG~a~a~~la~~G--~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~ 78 (260)
T PRK06603 6 LQGKKGLITGIAN-----NMSISWAIAQLAKKHG--AELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFD 78 (260)
T ss_pred cCCcEEEEECCCC-----CcchHHHHHHHHHHcC--CEEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHH
Confidence 5678877777322 11143444422 124 67888877532110 011222357899999999998885
Q ss_pred -------cCcEEEecccc
Q psy1304 125 -------KCRVILNCVGP 135 (184)
Q Consensus 125 -------~~dVVIN~aGP 135 (184)
..|++||++|.
T Consensus 79 ~~~~~~g~iDilVnnag~ 96 (260)
T PRK06603 79 DIKEKWGSFDFLLHGMAF 96 (260)
T ss_pred HHHHHcCCccEEEEcccc
Confidence 37999999984
No 187
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.01 E-value=0.26 Score=41.71 Aligned_cols=81 Identities=17% Similarity=0.104 Sum_probs=50.8
Q ss_pred ccCccccceeeecccccCCCCCCCchhhhhhhCC--CCCceeEEeeeecccccc------cCCCCCCEEEEeCCCHHHHH
Q psy1304 49 ESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAP--TSNLTRLGLLGARDCLYR------ENLIDIPIIIADLKNESSIL 120 (184)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~--~~~~~~iaLAGrr~~lg~------~~~~~v~~v~vDv~D~~sL~ 120 (184)
+|.-++||+.-|-|- +++..|-.++|+.. .+ .++.+.+|++...+ ...+...++++|+.|+++++
T Consensus 4 ~~~~~~~k~~lItGa-----s~~~GIG~aia~~la~~G--~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~ 76 (272)
T PRK08159 4 ASGLMAGKRGLILGV-----ANNRSIAWGIAKACRAAG--AELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASID 76 (272)
T ss_pred ccccccCCEEEEECC-----CCCCcHHHHHHHHHHHCC--CEEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHH
Confidence 355567888777761 11223555555322 33 67888776531110 11233557899999999999
Q ss_pred HHhhc-------CcEEEeccccc
Q psy1304 121 IMAKK-------CRVILNCVGPY 136 (184)
Q Consensus 121 a~l~~-------~dVVIN~aGPf 136 (184)
++++. .|++||++|-.
T Consensus 77 ~~~~~~~~~~g~iD~lv~nAG~~ 99 (272)
T PRK08159 77 AVFETLEKKWGKLDFVVHAIGFS 99 (272)
T ss_pred HHHHHHHHhcCCCcEEEECCccc
Confidence 88763 69999999843
No 188
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=91.99 E-value=0.21 Score=39.84 Aligned_cols=59 Identities=7% Similarity=0.039 Sum_probs=39.4
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccc-----c---cCCCCCCEEEEeCCCHHHHHHHhhc-------CcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLY-----R---ENLIDIPIIIADLKNESSILIMAKK-------CRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg-----~---~~~~~v~~v~vDv~D~~sL~a~l~~-------~dVVIN~aGPf 136 (184)
++.+|++. + .++.+.+|+.... . ....++.++.+|+.|++++++++++ .|.|||++|..
T Consensus 14 la~~l~~~--G--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 87 (239)
T TIGR01830 14 IALKLAKE--G--AKVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEEELGPIDILVNNAGIT 87 (239)
T ss_pred HHHHHHHC--C--CEEEEEeCCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 55666654 3 4566666654110 0 0112467899999999999988865 59999999964
No 189
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=91.93 E-value=0.26 Score=39.83 Aligned_cols=58 Identities=10% Similarity=0.086 Sum_probs=39.5
Q ss_pred hhhhhhhCCCCCceeEEeeeecccccc-------cCCCCCCEEEEeCCCHHHHHHHhh-------cCcEEEecccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYR-------ENLIDIPIIIADLKNESSILIMAK-------KCRVILNCVGP 135 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~-------~~~~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGP 135 (184)
++.+|++.. .++.+..|+..... ....++.++.+|+.|.++++++++ +.|+|||++|.
T Consensus 19 la~~l~~~g----~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 90 (250)
T TIGR03206 19 TCRRFAEEG----AKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGPVDVLVNNAGW 90 (250)
T ss_pred HHHHHHHCC----CEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 455555443 46666666543211 012457889999999999999886 47999999973
No 190
>PRK06483 dihydromonapterin reductase; Provisional
Probab=91.90 E-value=0.19 Score=40.77 Aligned_cols=59 Identities=12% Similarity=0.083 Sum_probs=39.5
Q ss_pred hhhhhhhCCCCCceeEEeeeecccccccCC--CCCCEEEEeCCCHHHHHHHhhc-------CcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRENL--IDIPIIIADLKNESSILIMAKK-------CRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~~~--~~v~~v~vDv~D~~sL~a~l~~-------~dVVIN~aGPf 136 (184)
++.+|++. + .++.+.+|+........ ....++.+|+.|++++.+++++ .|++||++|-+
T Consensus 18 ia~~l~~~--G--~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~ag~~ 85 (236)
T PRK06483 18 LAWHLLAQ--G--QPVIVSYRTHYPAIDGLRQAGAQCIQADFSTNAGIMAFIDELKQHTDGLRAIIHNASDW 85 (236)
T ss_pred HHHHHHHC--C--CeEEEEeCCchhHHHHHHHcCCEEEEcCCCCHHHHHHHHHHHHhhCCCccEEEECCccc
Confidence 44555543 3 57777777653211111 2367899999999999887654 69999999853
No 191
>PRK07677 short chain dehydrogenase; Provisional
Probab=91.83 E-value=0.16 Score=41.72 Aligned_cols=59 Identities=12% Similarity=0.122 Sum_probs=40.4
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc-------CCCCCCEEEEeCCCHHHHHHHhh-------cCcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE-------NLIDIPIIIADLKNESSILIMAK-------KCRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~-------~~~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGPf 136 (184)
++..|++. + .++.+.+|+...... ...++.++.+|+.|+++++++++ ..|+|||++|..
T Consensus 17 ia~~l~~~--G--~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lI~~ag~~ 89 (252)
T PRK07677 17 MAKRFAEE--G--ANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRIDALINNAAGN 89 (252)
T ss_pred HHHHHHHC--C--CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCccEEEECCCCC
Confidence 55555554 3 567777776432110 11357789999999999988776 469999999854
No 192
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=91.82 E-value=0.19 Score=41.53 Aligned_cols=61 Identities=18% Similarity=0.179 Sum_probs=40.8
Q ss_pred hhhhhhhC--CCCCceeEEeeeeccccccc---------CCCCCCEEEEeCCCHHHHHHHhhcC-----------cEEEe
Q psy1304 74 PSAYKADA--PTSNLTRLGLLGARDCLYRE---------NLIDIPIIIADLKNESSILIMAKKC-----------RVILN 131 (184)
Q Consensus 74 ~~~~La~~--~~~~~~~iaLAGrr~~lg~~---------~~~~v~~v~vDv~D~~sL~a~l~~~-----------dVVIN 131 (184)
++.+|++. ..+ .++.+.+|+.....+ ...++.++.+|+.|+++++++++.. ++|||
T Consensus 16 ~a~~la~~~~~~g--~~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~~~~~~~~~~g~~~~~~~~lv~ 93 (256)
T TIGR01500 16 IAQELAKCLKSPG--SVLVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGAEAGLEQLLKALRELPRPKGLQRLLLIN 93 (256)
T ss_pred HHHHHHHhhccCC--cEEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCCHHHHHHHHHHHHhccccCCCceEEEEe
Confidence 44555542 245 788888886532110 1135678999999999998887642 58999
Q ss_pred ccccc
Q psy1304 132 CVGPY 136 (184)
Q Consensus 132 ~aGPf 136 (184)
++|-+
T Consensus 94 nAG~~ 98 (256)
T TIGR01500 94 NAGTL 98 (256)
T ss_pred CCccc
Confidence 99853
No 193
>PRK07102 short chain dehydrogenase; Provisional
Probab=91.80 E-value=0.16 Score=41.41 Aligned_cols=59 Identities=17% Similarity=0.114 Sum_probs=41.4
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc--------CCCCCCEEEEeCCCHHHHHHHhhc----CcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE--------NLIDIPIIIADLKNESSILIMAKK----CRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~--------~~~~v~~v~vDv~D~~sL~a~l~~----~dVVIN~aGPf 136 (184)
++.+|++. + .++.+.+|+.+...+ ...++.++++|+.|+++++++++. .|+|||++|..
T Consensus 17 ~a~~l~~~--G--~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~vv~~ag~~ 87 (243)
T PRK07102 17 CARRYAAA--G--ARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDIVLIAVGTL 87 (243)
T ss_pred HHHHHHhc--C--CEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCEEEECCcCC
Confidence 55666654 3 567777776532211 114678999999999999988775 59999999854
No 194
>PRK07201 short chain dehydrogenase; Provisional
Probab=91.79 E-value=0.19 Score=47.15 Aligned_cols=75 Identities=13% Similarity=0.119 Sum_probs=49.7
Q ss_pred ccccceeeecccccCCCCCCCchhhhhhhCC--CCCceeEEeeeeccccccc-------CCCCCCEEEEeCCCHHHHHHH
Q psy1304 52 PFRGQTLSVQDKIRPGRGSNPRPSAYKADAP--TSNLTRLGLLGARDCLYRE-------NLIDIPIIIADLKNESSILIM 122 (184)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~--~~~~~~iaLAGrr~~lg~~-------~~~~v~~v~vDv~D~~sL~a~ 122 (184)
.++||++-|.|- ...|..++++.. .+ .++.+.+|+.+...+ ...++.++.+|+.|+++++++
T Consensus 368 ~~~~k~vlItGa-------s~giG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~ 438 (657)
T PRK07201 368 PLVGKVVLITGA-------SSGIGRATAIKVAEAG--ATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHT 438 (657)
T ss_pred CCCCCEEEEeCC-------CCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHH
Confidence 466777777651 122545555321 23 678888876543211 124578899999999999998
Q ss_pred hh-------cCcEEEecccc
Q psy1304 123 AK-------KCRVILNCVGP 135 (184)
Q Consensus 123 l~-------~~dVVIN~aGP 135 (184)
++ +.|+|||++|.
T Consensus 439 ~~~~~~~~g~id~li~~Ag~ 458 (657)
T PRK07201 439 VKDILAEHGHVDYLVNNAGR 458 (657)
T ss_pred HHHHHHhcCCCCEEEECCCC
Confidence 87 58999999994
No 195
>PRK07074 short chain dehydrogenase; Provisional
Probab=91.77 E-value=0.15 Score=41.69 Aligned_cols=59 Identities=14% Similarity=0.089 Sum_probs=40.9
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc-----CCCCCCEEEEeCCCHHHHHHHhhc-------CcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE-----NLIDIPIIIADLKNESSILIMAKK-------CRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~-----~~~~v~~v~vDv~D~~sL~a~l~~-------~dVVIN~aGPf 136 (184)
++.+|++. + .++.+.+|+...... ....+.++.+|+.|++++..++++ .|+|||++|..
T Consensus 18 la~~L~~~--g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 88 (257)
T PRK07074 18 LARRFLAA--G--DRVLALDIDAAALAAFADALGDARFVPVACDLTDAASLAAALANAAAERGPVDVLVANAGAA 88 (257)
T ss_pred HHHHHHHC--C--CEEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 66677654 3 466777775432110 013577889999999999888874 79999999853
No 196
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=91.74 E-value=0.19 Score=41.71 Aligned_cols=59 Identities=15% Similarity=0.144 Sum_probs=41.1
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc-------CCCCCCEEEEeCCCHHHHHHHhhc-------CcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE-------NLIDIPIIIADLKNESSILIMAKK-------CRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~-------~~~~v~~v~vDv~D~~sL~a~l~~-------~dVVIN~aGPf 136 (184)
++.+|++.. .++.+.+|+.+.... ...++.++++|+.|++++++++.. .|+||||+|..
T Consensus 26 ia~~l~~~G----~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li~~ag~~ 98 (265)
T PRK07097 26 IAKAYAKAG----ATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVGVIDILVNNAGII 98 (265)
T ss_pred HHHHHHHCC----CeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEECCCCC
Confidence 556666543 567777765432110 113577899999999999998864 69999999964
No 197
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=91.70 E-value=0.14 Score=42.26 Aligned_cols=59 Identities=10% Similarity=0.095 Sum_probs=41.2
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc------CCCCCCEEEEeCCCHHHHHHHhh-------cCcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE------NLIDIPIIIADLKNESSILIMAK-------KCRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~------~~~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGPf 136 (184)
++..|++. + .++.+.+|+...... ..+++.++++|+.|+++++++++ +.|+|||++|..
T Consensus 16 ia~~l~~~--G--~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~li~naG~~ 87 (259)
T PRK08340 16 VARELLKK--G--ARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGIDALVWNAGNV 87 (259)
T ss_pred HHHHHHHc--C--CEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 55555554 3 678888876532110 11357789999999999998885 479999999953
No 198
>PRK12829 short chain dehydrogenase; Provisional
Probab=91.66 E-value=0.2 Score=40.90 Aligned_cols=59 Identities=15% Similarity=0.180 Sum_probs=39.8
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc---CCC--CCCEEEEeCCCHHHHHHHhh-------cCcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE---NLI--DIPIIIADLKNESSILIMAK-------KCRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~---~~~--~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGPf 136 (184)
++.+|++.. -++.+.+|++..... ... ++.++.+|+.|++++..+++ ++|+|||++|+.
T Consensus 27 ~a~~L~~~g----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 97 (264)
T PRK12829 27 IAEAFAEAG----ARVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDTAVERFGGLDVLVNNAGIA 97 (264)
T ss_pred HHHHHHHCC----CEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 455555443 456677775432110 112 45789999999999988876 589999999976
No 199
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=91.65 E-value=0.17 Score=41.12 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=29.3
Q ss_pred CCCCEEEEeCCCHHHHHHHhhc-------CcEEEecccccc
Q psy1304 104 IDIPIIIADLKNESSILIMAKK-------CRVILNCVGPYT 137 (184)
Q Consensus 104 ~~v~~v~vDv~D~~sL~a~l~~-------~dVVIN~aGPf~ 137 (184)
.++.++.+|+.|++++.+++++ .|+||||+|.+.
T Consensus 56 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~ 96 (247)
T PRK12935 56 HDVYAVQADVSKVEDANRLVEEAVNHFGKVDILVNNAGITR 96 (247)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence 3577899999999999999887 699999999754
No 200
>PRK12939 short chain dehydrogenase; Provisional
Probab=91.51 E-value=0.24 Score=39.90 Aligned_cols=33 Identities=21% Similarity=0.132 Sum_probs=28.2
Q ss_pred CCCCEEEEeCCCHHHHHHHhh-------cCcEEEeccccc
Q psy1304 104 IDIPIIIADLKNESSILIMAK-------KCRVILNCVGPY 136 (184)
Q Consensus 104 ~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGPf 136 (184)
.++.++.+|+.|++++.++++ +.|+||||+|..
T Consensus 56 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 95 (250)
T PRK12939 56 GRAHAIAADLADPASVQRFFDAAAAALGGLDGLVNNAGIT 95 (250)
T ss_pred CcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 457889999999999998885 589999999963
No 201
>PRK06500 short chain dehydrogenase; Provisional
Probab=91.46 E-value=0.22 Score=40.23 Aligned_cols=58 Identities=12% Similarity=0.077 Sum_probs=38.7
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc----CCCCCCEEEEeCCCHHHHHHHhh-------cCcEEEecccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE----NLIDIPIIIADLKNESSILIMAK-------KCRVILNCVGP 135 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~----~~~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGP 135 (184)
++.+|++.. .++.+.+|+.+...+ ...++.++++|+.|.+++.++++ +.|+|||++|.
T Consensus 22 la~~l~~~g----~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 90 (249)
T PRK06500 22 TARQFLAEG----ARVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQALAEAFGRLDAVFINAGV 90 (249)
T ss_pred HHHHHHHCC----CEEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 555555543 567777776432111 11356788999999988877655 57999999985
No 202
>PRK07041 short chain dehydrogenase; Provisional
Probab=91.44 E-value=0.26 Score=39.53 Aligned_cols=58 Identities=7% Similarity=0.001 Sum_probs=41.3
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc------CCCCCCEEEEeCCCHHHHHHHhhc---CcEEEecccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE------NLIDIPIIIADLKNESSILIMAKK---CRVILNCVGP 135 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~------~~~~v~~v~vDv~D~~sL~a~l~~---~dVVIN~aGP 135 (184)
++..|++.. .++.+.+|+.+.... ...++.++.+|+.|++++.++++. .|++||++|-
T Consensus 13 ~a~~l~~~G----~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~ag~ 79 (230)
T PRK07041 13 LARAFAAEG----ARVTIASRSRDRLAAAARALGGGAPVRTAALDITDEAAVDAFFAEAGPFDHVVITAAD 79 (230)
T ss_pred HHHHHHHCC----CEEEEEeCCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHhcCCCCEEEECCCC
Confidence 666666553 567777776432110 124577899999999999999986 6999999984
No 203
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=91.41 E-value=0.15 Score=41.75 Aligned_cols=58 Identities=14% Similarity=0.035 Sum_probs=40.1
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc-------C--CCCCCEEEEeCCCHHHHHHHhhc-------CcEEEecccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE-------N--LIDIPIIIADLKNESSILIMAKK-------CRVILNCVGP 135 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~-------~--~~~v~~v~vDv~D~~sL~a~l~~-------~dVVIN~aGP 135 (184)
++.+|++. + .++.+.+|+...... . ..++.++.+|+.|++++.+++++ .|+|||++|.
T Consensus 18 la~~l~~~--g--~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~id~vv~~ag~ 91 (259)
T PRK12384 18 LCHGLAEE--G--YRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGRVDLLVYNAGI 91 (259)
T ss_pred HHHHHHHC--C--CEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 55666654 4 677777775421110 0 13577899999999999888764 6999999984
No 204
>PRK06701 short chain dehydrogenase; Provisional
Probab=91.40 E-value=0.23 Score=42.47 Aligned_cols=80 Identities=10% Similarity=0.109 Sum_probs=49.8
Q ss_pred cCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccc--------cCCCCCCEEEEeCCCHHHHHH
Q psy1304 50 SQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYR--------ENLIDIPIIIADLKNESSILI 121 (184)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~--------~~~~~v~~v~vDv~D~~sL~a 121 (184)
+..++||++-|.|- +.+---.++.+|++. + .++.+.+|++.... ....++.++.+|+.|.+++.+
T Consensus 41 ~~~~~~k~iLItGa---sggIG~~la~~l~~~--G--~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 113 (290)
T PRK06701 41 SGKLKGKVALITGG---DSGIGRAVAVLFAKE--G--ADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKD 113 (290)
T ss_pred ccCCCCCEEEEeCC---CcHHHHHHHHHHHHC--C--CEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHH
Confidence 34677888777762 222111134444443 3 67777777542110 011346789999999999988
Q ss_pred Hhh-------cCcEEEeccccc
Q psy1304 122 MAK-------KCRVILNCVGPY 136 (184)
Q Consensus 122 ~l~-------~~dVVIN~aGPf 136 (184)
+++ +.|+|||++|..
T Consensus 114 ~~~~i~~~~~~iD~lI~~Ag~~ 135 (290)
T PRK06701 114 AVEETVRELGRLDILVNNAAFQ 135 (290)
T ss_pred HHHHHHHHcCCCCEEEECCccc
Confidence 886 469999999853
No 205
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=91.33 E-value=0.28 Score=37.26 Aligned_cols=60 Identities=18% Similarity=0.166 Sum_probs=44.0
Q ss_pred hhhhhhhCCCCCceeEEeeeec--cc--------ccccCCCCCCEEEEeCCCHHHHHHHhh-------cCcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGAR--DC--------LYRENLIDIPIIIADLKNESSILIMAK-------KCRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr--~~--------lg~~~~~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGPf 136 (184)
++.+|++. .+ -++.+.+|+ .. +. ....++.++++|+.|+++++++++ ..|++|||+|.+
T Consensus 16 ~a~~l~~~-g~--~~v~~~~r~~~~~~~~~l~~~l~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ld~li~~ag~~ 91 (167)
T PF00106_consen 16 LARALARR-GA--RVVILTSRSEDSEGAQELIQELK-APGAKITFIECDLSDPESIRALIEEVIKRFGPLDILINNAGIF 91 (167)
T ss_dssp HHHHHHHT-TT--EEEEEEESSCHHHHHHHHHHHHH-HTTSEEEEEESETTSHHHHHHHHHHHHHHHSSESEEEEECSCT
T ss_pred HHHHHHhc-Cc--eEEEEeeeccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccc
Confidence 55666655 33 688888888 21 11 122668899999999999998876 468999999987
Q ss_pred c
Q psy1304 137 T 137 (184)
Q Consensus 137 ~ 137 (184)
.
T Consensus 92 ~ 92 (167)
T PF00106_consen 92 S 92 (167)
T ss_dssp T
T ss_pred c
Confidence 6
No 206
>PRK08219 short chain dehydrogenase; Provisional
Probab=91.31 E-value=0.2 Score=39.84 Aligned_cols=59 Identities=17% Similarity=0.095 Sum_probs=40.8
Q ss_pred hhhhhhhCCCCCceeEEeeeecccccc---cCCCCCCEEEEeCCCHHHHHHHhh---cCcEEEecccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYR---ENLIDIPIIIADLKNESSILIMAK---KCRVILNCVGPYT 137 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~---~~~~~v~~v~vDv~D~~sL~a~l~---~~dVVIN~aGPf~ 137 (184)
++..|++. - ++.+.+|+..... .....+.++++|+.|++++.++++ +.|.|||++|...
T Consensus 19 l~~~l~~~-~----~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag~~~ 83 (227)
T PRK08219 19 IARELAPT-H----TLLLGGRPAERLDELAAELPGATPFPVDLTDPEAIAAAVEQLGRLDVLVHNAGVAD 83 (227)
T ss_pred HHHHHHhh-C----CEEEEeCCHHHHHHHHHHhccceEEecCCCCHHHHHHHHHhcCCCCEEEECCCcCC
Confidence 66666654 2 3455556543211 012457899999999999999998 4899999999753
No 207
>PRK07023 short chain dehydrogenase; Provisional
Probab=91.30 E-value=0.35 Score=39.30 Aligned_cols=59 Identities=7% Similarity=-0.053 Sum_probs=39.4
Q ss_pred hhhhhhhCCCCCceeEEeeeecccccc--cCCCCCCEEEEeCCCHHHHHHHhhc-----------CcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYR--ENLIDIPIIIADLKNESSILIMAKK-----------CRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~--~~~~~v~~v~vDv~D~~sL~a~l~~-----------~dVVIN~aGPf 136 (184)
++.+|++. + .++.+.+|+..... ....++.++++|+.|++++++++.+ .|.+||++|..
T Consensus 17 ia~~l~~~--G--~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ag~~ 88 (243)
T PRK07023 17 LAEQLLQP--G--IAVLGVARSRHPSLAAAAGERLAEVELDLSDAAAAAAWLAGDLLAAFVDGASRVLLINNAGTV 88 (243)
T ss_pred HHHHHHhC--C--CEEEEEecCcchhhhhccCCeEEEEEeccCCHHHHHHHHHHHHHHHhccCCCceEEEEcCccc
Confidence 55666654 3 56666666543211 1114578899999999999986543 57999999864
No 208
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=91.29 E-value=0.3 Score=41.33 Aligned_cols=50 Identities=8% Similarity=0.065 Sum_probs=31.7
Q ss_pred EEEeCCCHHHHHH----Hhh-----cCcEEEeccccccc----------c----chHHHHHHHHcCCCEeeCC
Q psy1304 109 IIADLKNESSILI----MAK-----KCRVILNCVGPYTW----------Y----GEAVVKACIEAKTHHVDIT 158 (184)
Q Consensus 109 v~vDv~D~~sL~a----~l~-----~~dVVIN~aGPf~~----------~----g~~VaeACieAGthYVDlt 158 (184)
..+|+.|..+.+. +++ ++|+||||||-... . ..+++++|.+.|+.+|-++
T Consensus 43 ~~~~~~d~~~~~~~~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~~~~i~~S 115 (308)
T PRK11150 43 VDLDIADYMDKEDFLAQIMAGDDFGDIEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIPFLYAS 115 (308)
T ss_pred hhhhhhhhhhHHHHHHHHhcccccCCccEEEECceecCCcCCChHHHHHHHHHHHHHHHHHHHHcCCcEEEEc
Confidence 4456665443333 332 68999999972211 0 1579999999998866553
No 209
>PRK12746 short chain dehydrogenase; Provisional
Probab=91.28 E-value=0.29 Score=39.92 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=27.7
Q ss_pred CCCEEEEeCCCHHHHHHHhh-------------cCcEEEeccccc
Q psy1304 105 DIPIIIADLKNESSILIMAK-------------KCRVILNCVGPY 136 (184)
Q Consensus 105 ~v~~v~vDv~D~~sL~a~l~-------------~~dVVIN~aGPf 136 (184)
.+.++.+|+.|++++.++++ +.|+|||++|..
T Consensus 57 ~~~~~~~D~~d~~~i~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 101 (254)
T PRK12746 57 KAFLIEADLNSIDGVKKLVEQLKNELQIRVGTSEIDILVNNAGIG 101 (254)
T ss_pred cEEEEEcCcCCHHHHHHHHHHHHHHhccccCCCCccEEEECCCCC
Confidence 46789999999999998877 479999999964
No 210
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=91.27 E-value=0.24 Score=40.74 Aligned_cols=59 Identities=12% Similarity=-0.034 Sum_probs=39.7
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc-------CCCCCCEEEEeCCCHHHHHHHhhc-------CcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE-------NLIDIPIIIADLKNESSILIMAKK-------CRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~-------~~~~v~~v~vDv~D~~sL~a~l~~-------~dVVIN~aGPf 136 (184)
++.+|++.. .++.+.+|+...... ...++.++.+|+.|.+++.++++. .|++|||+|..
T Consensus 27 la~~l~~~G----~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~~d~li~~ag~~ 99 (255)
T PRK06113 27 IAITFATAG----ASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKLGKVDILVNNAGGG 99 (255)
T ss_pred HHHHHHHCC----CeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 555555543 566677765432110 113567889999999999887764 59999999853
No 211
>PLN02572 UDP-sulfoquinovose synthase
Probab=91.27 E-value=0.79 Score=42.27 Aligned_cols=48 Identities=15% Similarity=0.104 Sum_probs=38.5
Q ss_pred CCCEEEEeCCCHHHHHHHhhc--CcEEEecccc----ccc-----------cc----hHHHHHHHHcCC
Q psy1304 105 DIPIIIADLKNESSILIMAKK--CRVILNCVGP----YTW-----------YG----EAVVKACIEAKT 152 (184)
Q Consensus 105 ~v~~v~vDv~D~~sL~a~l~~--~dVVIN~aGP----f~~-----------~g----~~VaeACieAGt 152 (184)
+++++.+|+.|++++.+++++ +|+|||+++. +.. .+ ..++++|.+.|+
T Consensus 114 ~v~~v~~Dl~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv 182 (442)
T PLN02572 114 EIELYVGDICDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAP 182 (442)
T ss_pred cceEEECCCCCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 578999999999999999985 8999999954 211 11 678899999886
No 212
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.26 E-value=0.41 Score=38.91 Aligned_cols=58 Identities=17% Similarity=0.064 Sum_probs=39.4
Q ss_pred hhhhhhhCCCCCceeEEeeeecccccc--------cCCCCCCEEEEeCCCHHHHHHHhh-------cCcEEEecccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYR--------ENLIDIPIIIADLKNESSILIMAK-------KCRVILNCVGP 135 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~--------~~~~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGP 135 (184)
++..|++.. .++.+.+|+..... ....++.++.+|+.|++++.++++ ..|+||||+|.
T Consensus 18 la~~L~~~g----~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 90 (256)
T PRK12745 18 IARALAAAG----FDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAWGRIDCLVNNAGV 90 (256)
T ss_pred HHHHHHHCC----CEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhcCCCCEEEECCcc
Confidence 566666553 45666666532110 011357899999999999888776 46999999984
No 213
>PRK07831 short chain dehydrogenase; Provisional
Probab=91.26 E-value=0.24 Score=40.90 Aligned_cols=79 Identities=15% Similarity=0.252 Sum_probs=48.9
Q ss_pred CccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeeccccccc---------CCCCCCEEEEeCCCHHHHHH
Q psy1304 51 QPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRE---------NLIDIPIIIADLKNESSILI 121 (184)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~---------~~~~v~~v~vDv~D~~sL~a 121 (184)
..++||++-|-|-- |+|--..++..|++.. .++.+.+|+...... ...++.++++|+.|++++++
T Consensus 13 ~~~~~k~vlItG~s--g~gIG~~ia~~l~~~G----~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 86 (262)
T PRK07831 13 GLLAGKVVLVTAAA--GTGIGSATARRALEEG----ARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDA 86 (262)
T ss_pred cccCCCEEEEECCC--cccHHHHHHHHHHHcC----CEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHH
Confidence 34567887777621 1121122555555544 456776665421110 01356789999999999998
Q ss_pred Hhh-------cCcEEEecccc
Q psy1304 122 MAK-------KCRVILNCVGP 135 (184)
Q Consensus 122 ~l~-------~~dVVIN~aGP 135 (184)
+++ ..|+||||+|.
T Consensus 87 ~~~~~~~~~g~id~li~~ag~ 107 (262)
T PRK07831 87 LIDAAVERLGRLDVLVNNAGL 107 (262)
T ss_pred HHHHHHHHcCCCCEEEECCCC
Confidence 886 46999999994
No 214
>PRK12937 short chain dehydrogenase; Provisional
Probab=91.26 E-value=0.21 Score=40.21 Aligned_cols=33 Identities=15% Similarity=0.219 Sum_probs=28.5
Q ss_pred CCCCEEEEeCCCHHHHHHHhh-------cCcEEEeccccc
Q psy1304 104 IDIPIIIADLKNESSILIMAK-------KCRVILNCVGPY 136 (184)
Q Consensus 104 ~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGPf 136 (184)
.++.++.+|+.|++++.++++ +.|+|||++|..
T Consensus 55 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 94 (245)
T PRK12937 55 GRAIAVQADVADAAAVTRLFDAAETAFGRIDVLVNNAGVM 94 (245)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 457889999999999999988 579999999953
No 215
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=91.25 E-value=0.26 Score=40.02 Aligned_cols=59 Identities=8% Similarity=0.018 Sum_probs=39.7
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccc-------ccCCCCCCEEEEeCCCHHHHHHHhhc-------CcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLY-------RENLIDIPIIIADLKNESSILIMAKK-------CRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg-------~~~~~~v~~v~vDv~D~~sL~a~l~~-------~dVVIN~aGPf 136 (184)
++.+|++.. .++.+-+|+.... .....++.++.+|+.|++++.++++. .|+|||++|..
T Consensus 16 la~~l~~~G----~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~~ag~~ 88 (254)
T TIGR02415 16 IAERLAKDG----FAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFDVMVNNAGVA 88 (254)
T ss_pred HHHHHHHCC----CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 556666543 5666666653211 01123577889999999999888764 59999999864
No 216
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.16 E-value=0.18 Score=40.24 Aligned_cols=31 Identities=13% Similarity=0.261 Sum_probs=27.0
Q ss_pred CCCCEEEEeCCCHHHHHHHhhc-------CcEEEeccc
Q psy1304 104 IDIPIIIADLKNESSILIMAKK-------CRVILNCVG 134 (184)
Q Consensus 104 ~~v~~v~vDv~D~~sL~a~l~~-------~dVVIN~aG 134 (184)
.++.++.+|+.|++++.+++++ .|+|||++|
T Consensus 56 ~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id~vi~~ag 93 (249)
T PRK12825 56 RRAQAVQADVTDKAALEAAVAAAVERFGRIDILVNNAG 93 (249)
T ss_pred CceEEEECCcCCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence 4578899999999999988864 699999999
No 217
>PRK09072 short chain dehydrogenase; Provisional
Probab=91.14 E-value=0.23 Score=40.94 Aligned_cols=59 Identities=22% Similarity=0.160 Sum_probs=41.2
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc------CCCCCCEEEEeCCCHHHHHHHhh------cCcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE------NLIDIPIIIADLKNESSILIMAK------KCRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~------~~~~v~~v~vDv~D~~sL~a~l~------~~dVVIN~aGPf 136 (184)
++.+|++. + .++.+.+|+...... ...++.++.+|+.|++++.++++ ..|+|||++|..
T Consensus 21 ia~~l~~~--G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id~lv~~ag~~ 91 (263)
T PRK09072 21 LAEALAAA--G--ARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGINVLINNAGVN 91 (263)
T ss_pred HHHHHHHC--C--CEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 56666654 3 567777776532110 11367899999999999888766 469999999964
No 218
>PRK06123 short chain dehydrogenase; Provisional
Probab=91.11 E-value=0.28 Score=39.75 Aligned_cols=32 Identities=19% Similarity=0.367 Sum_probs=27.7
Q ss_pred CCCEEEEeCCCHHHHHHHhh-------cCcEEEeccccc
Q psy1304 105 DIPIIIADLKNESSILIMAK-------KCRVILNCVGPY 136 (184)
Q Consensus 105 ~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGPf 136 (184)
.+.++.+|+.|++++.++++ ..|+|||++|..
T Consensus 53 ~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li~~ag~~ 91 (248)
T PRK06123 53 EALAVAADVADEADVLRLFEAVDRELGRLDALVNNAGIL 91 (248)
T ss_pred cEEEEEeccCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 46689999999999999887 469999999965
No 219
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=91.04 E-value=0.64 Score=40.18 Aligned_cols=59 Identities=12% Similarity=0.152 Sum_probs=41.1
Q ss_pred hhcCcEEEeccccccccchHHHHHHHHcCCCEeeCCCChHHHHHHHHHhHHHHHHcCCeee
Q psy1304 123 AKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVQKC 183 (184)
Q Consensus 123 l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltGE~~~~~~ii~~lhe~AkaaGV~Iv 183 (184)
-.+.|+||.|++|-.. ...++.|+++|.|.+-.+-..---.+....+.+.|++.|+.+.
T Consensus 59 ~~~~DvVve~t~~~~~--~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~ 117 (265)
T PRK13303 59 PQRPDLVVECAGHAAL--KEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGARLH 117 (265)
T ss_pred ccCCCEEEECCCHHHH--HHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEE
Confidence 3569999999987633 6899999999999875432111112223567888999997653
No 220
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=91.02 E-value=0.36 Score=40.97 Aligned_cols=70 Identities=13% Similarity=0.112 Sum_probs=42.9
Q ss_pred cccCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccccCCCCCCEEEEeCCC--HHHHHHHhhc
Q psy1304 48 GESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRENLIDIPIIIADLKN--ESSILIMAKK 125 (184)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~~~~~v~~v~vDv~D--~~sL~a~l~~ 125 (184)
..|++|-|.- ++.+|++.. -++.+..++.........+++++.++..+ .+.+.+.+++
T Consensus 22 N~SSG~iG~a----------------LA~~L~~~G----~~V~li~r~~~~~~~~~~~v~~i~v~s~~~m~~~l~~~~~~ 81 (229)
T PRK06732 22 NHSTGQLGKI----------------IAETFLAAG----HEVTLVTTKTAVKPEPHPNLSIIEIENVDDLLETLEPLVKD 81 (229)
T ss_pred CccchHHHHH----------------HHHHHHhCC----CEEEEEECcccccCCCCCCeEEEEEecHHHHHHHHHHHhcC
Confidence 5678888877 777777654 34444444332211112345666655433 2466677788
Q ss_pred CcEEEecccccc
Q psy1304 126 CRVILNCVGPYT 137 (184)
Q Consensus 126 ~dVVIN~aGPf~ 137 (184)
.|+||||||...
T Consensus 82 ~DivIh~AAvsd 93 (229)
T PRK06732 82 HDVLIHSMAVSD 93 (229)
T ss_pred CCEEEeCCccCC
Confidence 999999999753
No 221
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=91.01 E-value=0.35 Score=41.74 Aligned_cols=46 Identities=7% Similarity=-0.018 Sum_probs=36.5
Q ss_pred CCCEEEEeCCCHHHHHHHhhc--CcEEEecccccccc----------------chHHHHHHHHc
Q psy1304 105 DIPIIIADLKNESSILIMAKK--CRVILNCVGPYTWY----------------GEAVVKACIEA 150 (184)
Q Consensus 105 ~v~~v~vDv~D~~sL~a~l~~--~dVVIN~aGPf~~~----------------g~~VaeACieA 150 (184)
+++++.+|+.|.+++.+++++ +|+||||+|+.... ...++++|.+.
T Consensus 51 ~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~ 114 (352)
T PRK10084 51 RYVFEHADICDRAELDRIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNY 114 (352)
T ss_pred ceEEEEecCCCHHHHHHHHHhcCCCEEEECCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHh
Confidence 467889999999999999975 89999999964310 16788888763
No 222
>PRK06484 short chain dehydrogenase; Validated
Probab=91.01 E-value=0.64 Score=42.50 Aligned_cols=79 Identities=15% Similarity=0.074 Sum_probs=49.3
Q ss_pred CccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccc----cCCCCCCEEEEeCCCHHHHHHHhhc-
Q psy1304 51 QPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYR----ENLIDIPIIIADLKNESSILIMAKK- 125 (184)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~----~~~~~v~~v~vDv~D~~sL~a~l~~- 125 (184)
..+.||+.-|-|-- +|----++..|++.. .++.+.+|+..... ....+...+.+|+.|++++.++++.
T Consensus 265 ~~~~~k~~lItGas---~gIG~~~a~~l~~~G----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 337 (520)
T PRK06484 265 LAESPRVVAITGGA---RGIGRAVADRFAAAG----DRLLIIDRDAEGAKKLAEALGDEHLSVQADITDEAAVESAFAQI 337 (520)
T ss_pred cccCCCEEEEECCC---cHHHHHHHHHHHHCC----CEEEEEeCCHHHHHHHHHHhCCceeEEEccCCCHHHHHHHHHHH
Confidence 35678877776622 220011344444433 57888887653211 0113456789999999999988864
Q ss_pred ------CcEEEeccccc
Q psy1304 126 ------CRVILNCVGPY 136 (184)
Q Consensus 126 ------~dVVIN~aGPf 136 (184)
.|++||++|..
T Consensus 338 ~~~~g~id~li~nAg~~ 354 (520)
T PRK06484 338 QARWGRLDVLVNNAGIA 354 (520)
T ss_pred HHHcCCCCEEEECCCCc
Confidence 69999999953
No 223
>PRK07774 short chain dehydrogenase; Provisional
Probab=90.97 E-value=0.38 Score=38.98 Aligned_cols=58 Identities=10% Similarity=-0.054 Sum_probs=39.8
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc-------CCCCCCEEEEeCCCHHHHHHHhh-------cCcEEEecccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE-------NLIDIPIIIADLKNESSILIMAK-------KCRVILNCVGP 135 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~-------~~~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGP 135 (184)
++.+|+... -++.+.+|+...... ......++.+|+.|++++.++++ ..|+|||++|.
T Consensus 22 la~~l~~~g----~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 93 (250)
T PRK07774 22 YAEALAREG----ASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFGGIDYLVNNAAI 93 (250)
T ss_pred HHHHHHHCC----CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 566666543 567777775432110 11245688999999999988777 47999999994
No 224
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=90.96 E-value=0.35 Score=38.84 Aligned_cols=61 Identities=13% Similarity=0.171 Sum_probs=38.2
Q ss_pred hhhhhhhCCCCCceeEEeeeecc-ccc---------ccCCCCCCEEEEeCCCHHHHHHHhhcC-------cEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARD-CLY---------RENLIDIPIIIADLKNESSILIMAKKC-------RVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~-~lg---------~~~~~~v~~v~vDv~D~~sL~a~l~~~-------dVVIN~aGPf 136 (184)
++.+|++.. . .+|.|.||+. ... .....++.++.+|+.|++++.+++++. +.||+++|..
T Consensus 16 la~~La~~~-~--~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~~i~gVih~ag~~ 92 (181)
T PF08659_consen 16 LARWLAERG-A--RRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRFGPIDGVIHAAGVL 92 (181)
T ss_dssp HHHHHHHTT----SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTSS-EEEEEE-----
T ss_pred HHHHHHHcC-C--CEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhccCCcceeeeeeeee
Confidence 678888766 3 5899999882 110 011256889999999999999999764 5799999876
Q ss_pred c
Q psy1304 137 T 137 (184)
Q Consensus 137 ~ 137 (184)
.
T Consensus 93 ~ 93 (181)
T PF08659_consen 93 A 93 (181)
T ss_dssp -
T ss_pred c
Confidence 4
No 225
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=90.90 E-value=0.59 Score=40.16 Aligned_cols=59 Identities=5% Similarity=0.032 Sum_probs=42.5
Q ss_pred HHHHh-hcCcEEEeccccccccchHHHHHHHHcCCC-EeeCCC---ChHHHHHHHHHhHHHHHHcCCeee
Q psy1304 119 ILIMA-KKCRVILNCVGPYTWYGEAVVKACIEAKTH-HVDITG---EPYFMEYMQYEYNTRAQESEVQKC 183 (184)
Q Consensus 119 L~a~l-~~~dVVIN~aGPf~~~g~~VaeACieAGth-YVDltG---E~~~~~~ii~~lhe~AkaaGV~Iv 183 (184)
+++++ .+.|+|+.|+++... ..++..|+++|.| ++--.| +.+.. .++-+.|++.|..++
T Consensus 30 ~~eLl~~~vDaVviatp~~~H--~e~a~~aL~aGkhVl~~s~gAlad~e~~----~~l~~aA~~~g~~l~ 93 (229)
T TIGR03855 30 FDEFLPEDVDIVVEAASQEAV--KEYAEKILKNGKDLLIMSVGALADRELR----ERLREVARSSGRKVY 93 (229)
T ss_pred HHHHhcCCCCEEEECCChHHH--HHHHHHHHHCCCCEEEECCcccCCHHHH----HHHHHHHHhcCCEEE
Confidence 44444 579999999987766 4899999999999 552223 33332 466778899988765
No 226
>PRK07069 short chain dehydrogenase; Validated
Probab=90.88 E-value=0.16 Score=41.06 Aligned_cols=60 Identities=12% Similarity=0.020 Sum_probs=39.1
Q ss_pred hhhhhhhCCCCCceeEEeeeec-ccccc-------cCC--CCCCEEEEeCCCHHHHHHHhh-------cCcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGAR-DCLYR-------ENL--IDIPIIIADLKNESSILIMAK-------KCRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr-~~lg~-------~~~--~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGPf 136 (184)
++.+|++.. .++.+.+|+ ..... ... ....++++|+.|++++.++++ +.|+|||++|+.
T Consensus 15 ~a~~l~~~G----~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 90 (251)
T PRK07069 15 IARRMAEQG----AKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGGLSVLVNNAGVG 90 (251)
T ss_pred HHHHHHHCC----CEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCCccEEEECCCcC
Confidence 667777653 567777776 22110 010 112357899999999988776 469999999965
Q ss_pred c
Q psy1304 137 T 137 (184)
Q Consensus 137 ~ 137 (184)
.
T Consensus 91 ~ 91 (251)
T PRK07069 91 S 91 (251)
T ss_pred C
Confidence 3
No 227
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.66 E-value=0.29 Score=39.39 Aligned_cols=60 Identities=12% Similarity=0.196 Sum_probs=39.9
Q ss_pred hhhhhhhCCCCCceeEEeeeecccccc------cCCCCCCEEEEeCCCHHHHHHHhhc-------CcEEEecccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYR------ENLIDIPIIIADLKNESSILIMAKK-------CRVILNCVGPYT 137 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~------~~~~~v~~v~vDv~D~~sL~a~l~~-------~dVVIN~aGPf~ 137 (184)
++..|++. + .++.+..|+.+... ....++.++.+|+.|++++++++++ .|.+|+++|.+.
T Consensus 21 ~a~~l~~~--G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~ii~~ag~~~ 93 (238)
T PRK05786 21 VAYFALKE--G--AQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAIDGLVVTVGGYV 93 (238)
T ss_pred HHHHHHHC--C--CEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEEcCCCcC
Confidence 44444443 3 56667777554211 0113578899999999999887765 499999998653
No 228
>PRK07832 short chain dehydrogenase; Provisional
Probab=90.52 E-value=0.41 Score=39.90 Aligned_cols=59 Identities=14% Similarity=0.000 Sum_probs=39.2
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc-------C-CCCCCEEEEeCCCHHHHHHHhhc-------CcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE-------N-LIDIPIIIADLKNESSILIMAKK-------CRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~-------~-~~~v~~v~vDv~D~~sL~a~l~~-------~dVVIN~aGPf 136 (184)
++.+|++. + .++.+.+|+.+.... . .....+..+|+.|++++.++++. .|+|||++|..
T Consensus 16 la~~la~~--G--~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~ag~~ 89 (272)
T PRK07832 16 TALRLAAQ--G--AELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSMDVVMNIAGIS 89 (272)
T ss_pred HHHHHHHC--C--CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 56666654 3 567777775532110 0 01245578999999998887764 69999999965
No 229
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=90.49 E-value=0.36 Score=42.16 Aligned_cols=75 Identities=11% Similarity=0.130 Sum_probs=46.2
Q ss_pred cccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecc---ccccc-------CCCCCCEEEEeCCCHHHHHHH
Q psy1304 53 FRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARD---CLYRE-------NLIDIPIIIADLKNESSILIM 122 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~---~lg~~-------~~~~v~~v~vDv~D~~sL~a~ 122 (184)
++||+.-|-|-=--||. ++.+|+.... -+|.+..|+. +...+ ......+..+|++|.+++.+.
T Consensus 124 ~~~k~vlI~GAGGagrA----ia~~La~~G~---~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~ 196 (289)
T PRK12548 124 VKGKKLTVIGAGGAATA----IQVQCALDGA---KEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAE 196 (289)
T ss_pred cCCCEEEEECCcHHHHH----HHHHHHHCCC---CEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhh
Confidence 56777666663111222 4444554432 2488888874 22111 112345677899998899999
Q ss_pred hhcCcEEEeccc
Q psy1304 123 AKKCRVILNCVG 134 (184)
Q Consensus 123 l~~~dVVIN~aG 134 (184)
++.+|+||||..
T Consensus 197 ~~~~DilINaTp 208 (289)
T PRK12548 197 IASSDILVNATL 208 (289)
T ss_pred hccCCEEEEeCC
Confidence 999999999983
No 230
>PRK12744 short chain dehydrogenase; Provisional
Probab=90.47 E-value=0.62 Score=38.29 Aligned_cols=31 Identities=19% Similarity=0.285 Sum_probs=27.1
Q ss_pred CCCEEEEeCCCHHHHHHHhh-------cCcEEEecccc
Q psy1304 105 DIPIIIADLKNESSILIMAK-------KCRVILNCVGP 135 (184)
Q Consensus 105 ~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGP 135 (184)
++.++++|+.|++++.++++ +.|++||++|.
T Consensus 62 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~ag~ 99 (257)
T PRK12744 62 KAVAFQADLTTAAAVEKLFDDAKAAFGRPDIAINTVGK 99 (257)
T ss_pred cEEEEecCcCCHHHHHHHHHHHHHhhCCCCEEEECCcc
Confidence 57788999999999998876 47999999995
No 231
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.44 E-value=0.48 Score=38.14 Aligned_cols=56 Identities=9% Similarity=0.046 Sum_probs=37.5
Q ss_pred hhhhhhhCCCCCceeEEeeeecccccccCCCCCCEEEEeCCCH-HHHHHHhhcCcEEEecccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRENLIDIPIIIADLKNE-SSILIMAKKCRVILNCVGP 135 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~~~~~v~~v~vDv~D~-~sL~a~l~~~dVVIN~aGP 135 (184)
++.+|++. + .++.+.+|+.... ...++.++.+|+.|+ +++.+.+.+.|+|||++|.
T Consensus 21 ia~~l~~~--G--~~v~~~~r~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~id~lv~~ag~ 77 (235)
T PRK06550 21 QARAFLAQ--G--AQVYGVDKQDKPD--LSGNFHFLQLDLSDDLEPLFDWVPSVDILCNTAGI 77 (235)
T ss_pred HHHHHHHC--C--CEEEEEeCCcccc--cCCcEEEEECChHHHHHHHHHhhCCCCEEEECCCC
Confidence 55555544 3 5677777764321 124577899999987 5555555678999999994
No 232
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=90.44 E-value=0.8 Score=37.79 Aligned_cols=82 Identities=13% Similarity=-0.016 Sum_probs=50.0
Q ss_pred ccccCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccccCCCCCCEEEEeCCCHHHHHHHhhcC
Q psy1304 47 IGESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRENLIDIPIIIADLKNESSILIMAKKC 126 (184)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~~~~~v~~v~vDv~D~~sL~a~l~~~ 126 (184)
|.+.++|-|.. .+.+|.+.. .+|....|+..... ... .....|..+ ..+...+.++
T Consensus 3 VtGatG~iG~~----------------l~~~L~~~g----~~V~~~~r~~~~~~-~~~--~~~~~~~~~-~~~~~~~~~~ 58 (292)
T TIGR01777 3 ITGGTGFIGRA----------------LTQRLTKDG----HEVTILTRSPPAGA-NTK--WEGYKPWAP-LAESEALEGA 58 (292)
T ss_pred EEcccchhhHH----------------HHHHHHHcC----CEEEEEeCCCCCCC-ccc--ceeeecccc-cchhhhcCCC
Confidence 56778888877 667777643 44555545443321 111 111223333 4566778899
Q ss_pred cEEEecccccccc------------------chHHHHHHHHcCC
Q psy1304 127 RVILNCVGPYTWY------------------GEAVVKACIEAKT 152 (184)
Q Consensus 127 dVVIN~aGPf~~~------------------g~~VaeACieAGt 152 (184)
|+||||+|..... ...++++|.+.|+
T Consensus 59 D~Vvh~a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~ 102 (292)
T TIGR01777 59 DAVINLAGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAAEQ 102 (292)
T ss_pred CEEEECCCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhcCC
Confidence 9999999864210 2688899999986
No 233
>PRK09242 tropinone reductase; Provisional
Probab=90.39 E-value=0.22 Score=40.91 Aligned_cols=76 Identities=11% Similarity=0.127 Sum_probs=45.7
Q ss_pred cccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeeccccccc-------C--CCCCCEEEEeCCCHHHHHHHh
Q psy1304 53 FRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRE-------N--LIDIPIIIADLKNESSILIMA 123 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~-------~--~~~v~~v~vDv~D~~sL~a~l 123 (184)
++||+.-|-|- .++-...++..|++. + .++.+.+|+.+.... . ..++.++.+|+.|++++.+++
T Consensus 7 ~~~k~~lItGa---~~gIG~~~a~~l~~~--G--~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~ 79 (257)
T PRK09242 7 LDGQTALITGA---SKGIGLAIAREFLGL--G--ADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAIL 79 (257)
T ss_pred cCCCEEEEeCC---CchHHHHHHHHHHHc--C--CEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHH
Confidence 45666655551 122111144444443 3 567777776532110 1 135678899999999988777
Q ss_pred h-------cCcEEEecccc
Q psy1304 124 K-------KCRVILNCVGP 135 (184)
Q Consensus 124 ~-------~~dVVIN~aGP 135 (184)
+ +.|+|||++|.
T Consensus 80 ~~~~~~~g~id~li~~ag~ 98 (257)
T PRK09242 80 DWVEDHWDGLHILVNNAGG 98 (257)
T ss_pred HHHHHHcCCCCEEEECCCC
Confidence 6 36999999985
No 234
>PRK07578 short chain dehydrogenase; Provisional
Probab=90.37 E-value=0.42 Score=37.85 Aligned_cols=29 Identities=17% Similarity=0.313 Sum_probs=25.1
Q ss_pred EEEEeCCCHHHHHHHhh---cCcEEEeccccc
Q psy1304 108 IIIADLKNESSILIMAK---KCRVILNCVGPY 136 (184)
Q Consensus 108 ~v~vDv~D~~sL~a~l~---~~dVVIN~aGPf 136 (184)
.+++|+.|+++++++++ +.|+|||++|..
T Consensus 35 ~~~~D~~~~~~~~~~~~~~~~id~lv~~ag~~ 66 (199)
T PRK07578 35 DVQVDITDPASIRALFEKVGKVDAVVSAAGKV 66 (199)
T ss_pred ceEecCCChHHHHHHHHhcCCCCEEEECCCCC
Confidence 57899999999999887 579999999853
No 235
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=90.35 E-value=1.2 Score=38.64 Aligned_cols=80 Identities=13% Similarity=0.174 Sum_probs=57.4
Q ss_pred hhhhhhhCCCCCceeEEeeeecccccccCCCCCCEEEEeCCCHHHHHHHhh--cCcEEEecccccccc-chHHHHHHHHc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRENLIDIPIIIADLKNESSILIMAK--KCRVILNCVGPYTWY-GEAVVKACIEA 150 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~~~~~v~~v~vDv~D~~sL~a~l~--~~dVVIN~aGPf~~~-g~~VaeACieA 150 (184)
++..|.+..-. +-+.+++.-.. ......+.+.--..|.+++.++++ +.++||++.=||... ..++.++|.+.
T Consensus 17 la~~L~~~g~~--v~~Svat~~g~---~~~~~~~v~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~~ 91 (248)
T PRK08057 17 LARALAAAGVD--IVLSLAGRTGG---PADLPGPVRVGGFGGAEGLAAYLREEGIDLVIDATHPYAAQISANAAAACRAL 91 (248)
T ss_pred HHHHHHhCCCe--EEEEEccCCCC---cccCCceEEECCCCCHHHHHHHHHHCCCCEEEECCCccHHHHHHHHHHHHHHh
Confidence 67777766433 55555554222 122345555555559999999998 589999999999754 58999999999
Q ss_pred CCCEeeCC
Q psy1304 151 KTHHVDIT 158 (184)
Q Consensus 151 GthYVDlt 158 (184)
|+.|+-+-
T Consensus 92 ~ipyiR~e 99 (248)
T PRK08057 92 GIPYLRLE 99 (248)
T ss_pred CCcEEEEe
Confidence 99998763
No 236
>PRK06484 short chain dehydrogenase; Validated
Probab=90.27 E-value=0.28 Score=44.83 Aligned_cols=75 Identities=17% Similarity=0.095 Sum_probs=46.4
Q ss_pred ccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeeccccccc----CCCCCCEEEEeCCCHHHHHHHhhc----
Q psy1304 54 RGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRE----NLIDIPIIIADLKNESSILIMAKK---- 125 (184)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~----~~~~v~~v~vDv~D~~sL~a~l~~---- 125 (184)
+||+.-|-|- ++|----++.+|++.. .++.+.+|+.....+ ...+..++++|+.|+++++++++.
T Consensus 4 ~~k~~lITGa---s~gIG~aia~~l~~~G----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (520)
T PRK06484 4 QSRVVLVTGA---AGGIGRAACQRFARAG----DQVVVADRNVERARERADSLGPDHHALAMDVSDEAQIREGFEQLHRE 76 (520)
T ss_pred CCeEEEEECC---CcHHHHHHHHHHHHCC----CEEEEEeCCHHHHHHHHHHhCCceeEEEeccCCHHHHHHHHHHHHHH
Confidence 5666655551 1220111555555543 567777776532211 113466799999999999888764
Q ss_pred ---CcEEEecccc
Q psy1304 126 ---CRVILNCVGP 135 (184)
Q Consensus 126 ---~dVVIN~aGP 135 (184)
.|++||++|.
T Consensus 77 ~g~iD~li~nag~ 89 (520)
T PRK06484 77 FGRIDVLVNNAGV 89 (520)
T ss_pred hCCCCEEEECCCc
Confidence 7999999985
No 237
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=90.22 E-value=0.61 Score=42.15 Aligned_cols=92 Identities=10% Similarity=0.048 Sum_probs=59.0
Q ss_pred cccccCccccceeeecccccCCCCCCCchhhhhh-hCCCCCceeEEeeeecccccccC-CCCCCEEEEeCCCHHHHHHHh
Q psy1304 46 RIGESQPFRGQTLSVQDKIRPGRGSNPRPSAYKA-DAPTSNLTRLGLLGARDCLYREN-LIDIPIIIADLKNESSILIMA 123 (184)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La-~~~~~~~~~iaLAGrr~~lg~~~-~~~v~~v~vDv~D~~sL~a~l 123 (184)
.|.+.+++.|+. ..+-|+ +..|. ..+.....++..|+.- ... ...++.+.+.. + +
T Consensus 8 aIvGATG~vG~e----------------LlrlL~~~~hP~--~~l~~v~s~~~aG~~l~~~~---~~l~~~~~~~~-~-~ 64 (336)
T PRK05671 8 AVVGATGTVGEA----------------LVQILEERDFPV--GTLHLLASSESAGHSVPFAG---KNLRVREVDSF-D-F 64 (336)
T ss_pred EEEccCCHHHHH----------------HHHHHhhCCCCc--eEEEEEECcccCCCeeccCC---cceEEeeCChH-H-h
Confidence 368889999988 677888 34566 5554443333333211 122 22333332222 2 4
Q ss_pred hcCcEEEeccccccccchHHHHHHHHcCCCEeeCCCChH
Q psy1304 124 KKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPY 162 (184)
Q Consensus 124 ~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltGE~~ 162 (184)
+++|+|+-|+++ .....++..+.++|+..||++++..
T Consensus 65 ~~vD~vFla~p~--~~s~~~v~~~~~~G~~VIDlS~~fR 101 (336)
T PRK05671 65 SQVQLAFFAAGA--AVSRSFAEKARAAGCSVIDLSGALP 101 (336)
T ss_pred cCCCEEEEcCCH--HHHHHHHHHHHHCCCeEEECchhhc
Confidence 799999999863 4457799999999999999998753
No 238
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=90.18 E-value=0.33 Score=40.06 Aligned_cols=32 Identities=19% Similarity=0.292 Sum_probs=27.3
Q ss_pred CCCEEEEeCCCHHHHHHHhh-------cCcEEEeccccc
Q psy1304 105 DIPIIIADLKNESSILIMAK-------KCRVILNCVGPY 136 (184)
Q Consensus 105 ~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGPf 136 (184)
++.++++|+.|++++.++++ +.|++|||+|..
T Consensus 58 ~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~D~li~~Ag~~ 96 (253)
T PRK08993 58 RFLSLTADLRKIDGIPALLERAVAEFGHIDILVNNAGLI 96 (253)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 46788999999999998887 479999999853
No 239
>PRK05599 hypothetical protein; Provisional
Probab=90.12 E-value=0.36 Score=39.94 Aligned_cols=51 Identities=10% Similarity=0.055 Sum_probs=36.8
Q ss_pred eeEEeeeeccccccc-------CC-CCCCEEEEeCCCHHHHHHHhh-------cCcEEEecccccc
Q psy1304 87 TRLGLLGARDCLYRE-------NL-IDIPIIIADLKNESSILIMAK-------KCRVILNCVGPYT 137 (184)
Q Consensus 87 ~~iaLAGrr~~lg~~-------~~-~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGPf~ 137 (184)
.++.+.+|+.+...+ .. ..+.++++|+.|+++++++++ +.|++||++|.+.
T Consensus 24 ~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lv~nag~~~ 89 (246)
T PRK05599 24 EDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEISLAVVAFGILG 89 (246)
T ss_pred CEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCCCEEEEecCcCC
Confidence 788888886532211 11 236789999999999988765 3699999999763
No 240
>PRK07775 short chain dehydrogenase; Provisional
Probab=90.11 E-value=0.24 Score=41.55 Aligned_cols=59 Identities=15% Similarity=0.071 Sum_probs=40.5
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc-------CCCCCCEEEEeCCCHHHHHHHhh-------cCcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE-------NLIDIPIIIADLKNESSILIMAK-------KCRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~-------~~~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGPf 136 (184)
++..|++. + .++.+..|+.....+ ...++.++.+|+.|++++.++++ +.|+|||++|-.
T Consensus 26 la~~L~~~--G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~Ag~~ 98 (274)
T PRK07775 26 TAIELAAA--G--FPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEALGEIEVLVSGAGDT 98 (274)
T ss_pred HHHHHHHC--C--CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 66677754 3 567676665422110 11356788899999999998887 469999999853
No 241
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.08 E-value=0.31 Score=39.51 Aligned_cols=32 Identities=13% Similarity=0.092 Sum_probs=27.6
Q ss_pred CCCCEEEEeCCCHHHHHHHhhc--------CcEEEecccc
Q psy1304 104 IDIPIIIADLKNESSILIMAKK--------CRVILNCVGP 135 (184)
Q Consensus 104 ~~v~~v~vDv~D~~sL~a~l~~--------~dVVIN~aGP 135 (184)
.++.++++|+.|++++.+++++ .|++||++|.
T Consensus 52 ~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~id~li~~ag~ 91 (253)
T PRK08642 52 DRAIALQADVTDREQVQAMFATATEHFGKPITTVVNNALA 91 (253)
T ss_pred CceEEEEcCCCCHHHHHHHHHHHHHHhCCCCeEEEECCCc
Confidence 3577899999999999988875 8999999974
No 242
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=90.07 E-value=0.33 Score=39.75 Aligned_cols=58 Identities=9% Similarity=-0.011 Sum_probs=40.6
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc-------CCCCCCEEEEeCCCHHHHHHHhhc-------CcEEEecccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE-------NLIDIPIIIADLKNESSILIMAKK-------CRVILNCVGP 135 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~-------~~~~v~~v~vDv~D~~sL~a~l~~-------~dVVIN~aGP 135 (184)
++.+|++. + .++.+.+|+...... ...++.++.+|+.|++++.++++. .|+|||++|.
T Consensus 25 ia~~L~~~--G--~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 96 (254)
T PRK08085 25 LATGLAEY--G--AEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIGPIDVLINNAGI 96 (254)
T ss_pred HHHHHHHc--C--CEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 55666654 3 577788876532111 113466788999999999988764 6999999984
No 243
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.05 E-value=0.3 Score=39.36 Aligned_cols=58 Identities=16% Similarity=0.175 Sum_probs=38.5
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc-------CCCCCCEEEEeCCCHHHHHHHhhc-------CcEEEecccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE-------NLIDIPIIIADLKNESSILIMAKK-------CRVILNCVGP 135 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~-------~~~~v~~v~vDv~D~~sL~a~l~~-------~dVVIN~aGP 135 (184)
++.+|++. + .++.+..|+.....+ ...++.++++|+.|+++++++++. .|+|||++|.
T Consensus 21 ~a~~l~~~--G--~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 92 (253)
T PRK08217 21 MAEYLAQK--G--AKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFGQLNGLINNAGI 92 (253)
T ss_pred HHHHHHHC--C--CEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 44555543 3 567777665432110 123567899999999998877764 5999999994
No 244
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=90.05 E-value=0.62 Score=41.92 Aligned_cols=90 Identities=14% Similarity=0.048 Sum_probs=60.6
Q ss_pred ccccCccccceeeecccccCCCCCCCchhhhhhh-CCCCCceeEEeeeecccccccC-CCCCCEEEEeCCCHHHHHHHhh
Q psy1304 47 IGESQPFRGQTLSVQDKIRPGRGSNPRPSAYKAD-APTSNLTRLGLLGARDCLYREN-LIDIPIIIADLKNESSILIMAK 124 (184)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~-~~~~~~~~iaLAGrr~~lg~~~-~~~v~~v~vDv~D~~sL~a~l~ 124 (184)
|.+.+++.|+. ++..|++ -.|. .++.+..+++..|..- ....+....|++ ..+ ++
T Consensus 4 IvGAtG~vG~e----------------Li~lL~~~~hp~--~~l~~~as~~~~g~~~~~~~~~~~~~~~~----~~~-~~ 60 (339)
T TIGR01296 4 IVGATGAVGQE----------------MLKILEERNFPI--DKLVLLASDRSAGRKVTFKGKELEVNEAK----IES-FE 60 (339)
T ss_pred EEcCCCHHHHH----------------HHHHHHhCCCCh--hhEEEEeccccCCCeeeeCCeeEEEEeCC----hHH-hc
Confidence 56677888887 7788874 3566 6666555554443311 123456666664 122 47
Q ss_pred cCcEEEeccccccccchHHHHHHHHcCCCEeeCCCCh
Q psy1304 125 KCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEP 161 (184)
Q Consensus 125 ~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltGE~ 161 (184)
++|+|+-|+|.. ....++...+++|+.-||++++.
T Consensus 61 ~~D~v~~a~g~~--~s~~~a~~~~~~G~~VID~ss~~ 95 (339)
T TIGR01296 61 GIDIALFSAGGS--VSKEFAPKAAKCGAIVIDNTSAF 95 (339)
T ss_pred CCCEEEECCCHH--HHHHHHHHHHHCCCEEEECCHHH
Confidence 999999999755 34677888889999999999754
No 245
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=90.03 E-value=0.27 Score=40.37 Aligned_cols=58 Identities=24% Similarity=0.244 Sum_probs=38.5
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc-------CCCCCCEEEEeCCCHHHHHHHhh-------cCcEEEecccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE-------NLIDIPIIIADLKNESSILIMAK-------KCRVILNCVGP 135 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~-------~~~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGP 135 (184)
++.+|++.. .++.+.+|+....+. ...++.++.+|+.|++++.++++ ..|+|||++|-
T Consensus 28 la~~l~~~G----~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~~id~vi~~ag~ 99 (259)
T PRK08213 28 IAEALGEAG----ARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERFGHVDILVNNAGA 99 (259)
T ss_pred HHHHHHHcC----CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 455555533 467777775432110 11356789999999999977765 47999999984
No 246
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.97 E-value=0.55 Score=39.32 Aligned_cols=79 Identities=13% Similarity=0.034 Sum_probs=46.2
Q ss_pred cccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecc---cccc---cCCCCCCEEEEeCCCHHHHHHHhh--
Q psy1304 53 FRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARD---CLYR---ENLIDIPIIIADLKNESSILIMAK-- 124 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~---~lg~---~~~~~v~~v~vDv~D~~sL~a~l~-- 124 (184)
+.||+.-|.| -+++..|-.++|+..-..-.++.+.+|.+ +... ...+...++.+|+.|+++++++++
T Consensus 4 l~~k~vlItG-----as~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 78 (260)
T PRK06997 4 LAGKRILITG-----LLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDALFASL 78 (260)
T ss_pred cCCcEEEEeC-----CCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHH
Confidence 5677776665 11223355566632221116677765421 1100 011233478899999999998875
Q ss_pred -----cCcEEEeccccc
Q psy1304 125 -----KCRVILNCVGPY 136 (184)
Q Consensus 125 -----~~dVVIN~aGPf 136 (184)
+.|++||++|-.
T Consensus 79 ~~~~g~iD~lvnnAG~~ 95 (260)
T PRK06997 79 GQHWDGLDGLVHSIGFA 95 (260)
T ss_pred HHHhCCCcEEEEccccC
Confidence 379999999854
No 247
>PLN02996 fatty acyl-CoA reductase
Probab=89.96 E-value=0.88 Score=42.70 Aligned_cols=47 Identities=11% Similarity=0.104 Sum_probs=35.6
Q ss_pred CCCCEEEEeCC-------CHHHHHHHhhcCcEEEeccccccccc-------------hHHHHHHHHc
Q psy1304 104 IDIPIIIADLK-------NESSILIMAKKCRVILNCVGPYTWYG-------------EAVVKACIEA 150 (184)
Q Consensus 104 ~~v~~v~vDv~-------D~~sL~a~l~~~dVVIN~aGPf~~~g-------------~~VaeACieA 150 (184)
.++.++..|+. |.+.++.+++++|+|||||+...... ..++++|.+.
T Consensus 84 ~kv~~i~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~~a~~~ 150 (491)
T PLN02996 84 EKVTPVPGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTNFDERYDVALGINTLGALNVLNFAKKC 150 (491)
T ss_pred cCEEEEecccCCcCCCCChHHHHHHHHhCCCEEEECccccCCcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 45788889987 55667889999999999998643111 5678888875
No 248
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=89.96 E-value=0.41 Score=41.62 Aligned_cols=85 Identities=7% Similarity=-0.014 Sum_probs=54.8
Q ss_pred ccccCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeeccccccc------CCCCCCEEEEeCCCHHHHH
Q psy1304 47 IGESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRE------NLIDIPIIIADLKNESSIL 120 (184)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~------~~~~v~~v~vDv~D~~sL~ 120 (184)
|.+.++|-|.- ++..|++..- +|....|+...... ...++.++.+|+.|++++.
T Consensus 9 ItGatG~IG~~----------------l~~~L~~~G~----~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~ 68 (349)
T TIGR02622 9 VTGHTGFKGSW----------------LSLWLLELGA----EVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLR 68 (349)
T ss_pred EECCCChhHHH----------------HHHHHHHCCC----EEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHH
Confidence 45666676665 6667776543 34334454321110 1124678899999999999
Q ss_pred HHhhc--CcEEEeccccccc----------------cchHHHHHHHHcC
Q psy1304 121 IMAKK--CRVILNCVGPYTW----------------YGEAVVKACIEAK 151 (184)
Q Consensus 121 a~l~~--~dVVIN~aGPf~~----------------~g~~VaeACieAG 151 (184)
+++++ .|+||||+|.... ....++++|.+.+
T Consensus 69 ~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~ 117 (349)
T TIGR02622 69 KAIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIG 117 (349)
T ss_pred HHHhhcCCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcC
Confidence 99996 5999999984211 0157788888876
No 249
>PLN02206 UDP-glucuronate decarboxylase
Probab=89.94 E-value=0.56 Score=43.40 Aligned_cols=50 Identities=8% Similarity=0.084 Sum_probs=35.6
Q ss_pred CCCCEEEEeCCCHHHHHHHhhcCcEEEecccccc----cc------------chHHHHHHHHcCCCEeeCC
Q psy1304 104 IDIPIIIADLKNESSILIMAKKCRVILNCVGPYT----WY------------GEAVVKACIEAKTHHVDIT 158 (184)
Q Consensus 104 ~~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~----~~------------g~~VaeACieAGthYVDlt 158 (184)
.+++++..|+.++ ++.++|+|||||++.. .. ..+++++|.++|+++|-++
T Consensus 167 ~~~~~i~~D~~~~-----~l~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~S 232 (442)
T PLN02206 167 PNFELIRHDVVEP-----ILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTS 232 (442)
T ss_pred CceEEEECCccCh-----hhcCCCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence 3466777777654 3468999999998432 10 1678999999999877554
No 250
>PRK07060 short chain dehydrogenase; Provisional
Probab=89.74 E-value=0.41 Score=38.58 Aligned_cols=77 Identities=14% Similarity=0.179 Sum_probs=47.1
Q ss_pred cccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeeccccccc--CCCCCCEEEEeCCCHHHHHHHhhc---Cc
Q psy1304 53 FRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRE--NLIDIPIIIADLKNESSILIMAKK---CR 127 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~--~~~~v~~v~vDv~D~~sL~a~l~~---~d 127 (184)
++||++-|-|- +.+--..++.+|++. + .++.+.+|+.+.... ......++.+|+.|++++.++++. .|
T Consensus 7 ~~~~~~lItGa---~g~iG~~~a~~l~~~--g--~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d 79 (245)
T PRK07060 7 FSGKSVLVTGA---SSGIGRACAVALAQR--G--ARVVAAARNAAALDRLAGETGCEPLRLDVGDDAAIRAALAAAGAFD 79 (245)
T ss_pred cCCCEEEEeCC---cchHHHHHHHHHHHC--C--CEEEEEeCCHHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCC
Confidence 55666655541 011111255555554 3 467777776532211 112467889999999999998874 79
Q ss_pred EEEeccccc
Q psy1304 128 VILNCVGPY 136 (184)
Q Consensus 128 VVIN~aGPf 136 (184)
+|||++|..
T Consensus 80 ~vi~~ag~~ 88 (245)
T PRK07060 80 GLVNCAGIA 88 (245)
T ss_pred EEEECCCCC
Confidence 999999854
No 251
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.50 E-value=0.33 Score=41.78 Aligned_cols=79 Identities=9% Similarity=0.036 Sum_probs=48.9
Q ss_pred CccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeeccc-ccc-------cCCCCCCEEEEeCCCHHHHHHH
Q psy1304 51 QPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDC-LYR-------ENLIDIPIIIADLKNESSILIM 122 (184)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~-lg~-------~~~~~v~~v~vDv~D~~sL~a~ 122 (184)
..|+||+.-|.|- ++|--.-++.+|++.. .++.+.+++.. ... ....++.++.+|+.|++++.++
T Consensus 8 ~~l~~k~~lVTGa---s~gIG~~ia~~L~~~G----a~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~ 80 (306)
T PRK07792 8 TDLSGKVAVVTGA---AAGLGRAEALGLARLG----ATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADEL 80 (306)
T ss_pred cCCCCCEEEEECC---CChHHHHHHHHHHHCC----CEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHH
Confidence 3467777777662 2221122555555543 56666665321 100 0113567899999999999988
Q ss_pred hh------cCcEEEeccccc
Q psy1304 123 AK------KCRVILNCVGPY 136 (184)
Q Consensus 123 l~------~~dVVIN~aGPf 136 (184)
++ +.|+|||++|-.
T Consensus 81 ~~~~~~~g~iD~li~nAG~~ 100 (306)
T PRK07792 81 VATAVGLGGLDIVVNNAGIT 100 (306)
T ss_pred HHHHHHhCCCCEEEECCCCC
Confidence 86 479999999954
No 252
>PRK12742 oxidoreductase; Provisional
Probab=89.49 E-value=0.47 Score=38.14 Aligned_cols=78 Identities=12% Similarity=0.125 Sum_probs=44.9
Q ss_pred ccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecc-ccccc--CCCCCCEEEEeCCCHHHHHHHhhc---
Q psy1304 52 PFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARD-CLYRE--NLIDIPIIIADLKNESSILIMAKK--- 125 (184)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~-~lg~~--~~~~v~~v~vDv~D~~sL~a~l~~--- 125 (184)
.++||++-|-|- ..+---.++.+|++. + .++.+.++++ +...+ ......++.+|+.|.+++.++++.
T Consensus 3 ~~~~k~vlItGa---sggIG~~~a~~l~~~--G--~~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 75 (237)
T PRK12742 3 AFTGKKVLVLGG---SRGIGAAIVRRFVTD--G--ANVRFTYAGSKDAAERLAQETGATAVQTDSADRDAVIDVVRKSGA 75 (237)
T ss_pred CCCCCEEEEECC---CChHHHHHHHHHHHC--C--CEEEEecCCCHHHHHHHHHHhCCeEEecCCCCHHHHHHHHHHhCC
Confidence 356777666651 112011144444443 3 4566655432 11110 012356888999999999888865
Q ss_pred CcEEEeccccc
Q psy1304 126 CRVILNCVGPY 136 (184)
Q Consensus 126 ~dVVIN~aGPf 136 (184)
.|++||++|..
T Consensus 76 id~li~~ag~~ 86 (237)
T PRK12742 76 LDILVVNAGIA 86 (237)
T ss_pred CcEEEECCCCC
Confidence 79999999854
No 253
>PRK07904 short chain dehydrogenase; Provisional
Probab=89.44 E-value=0.77 Score=38.27 Aligned_cols=50 Identities=16% Similarity=0.088 Sum_probs=34.7
Q ss_pred eeEEeeeeccccc-c-------c-CCCCCCEEEEeCCCHHHHHHHhh------cCcEEEeccccc
Q psy1304 87 TRLGLLGARDCLY-R-------E-NLIDIPIIIADLKNESSILIMAK------KCRVILNCVGPY 136 (184)
Q Consensus 87 ~~iaLAGrr~~lg-~-------~-~~~~v~~v~vDv~D~~sL~a~l~------~~dVVIN~aGPf 136 (184)
.++.+.+|+.... . . ...++.++.+|+.|++++.++++ +.|++||++|-+
T Consensus 34 ~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~g~id~li~~ag~~ 98 (253)
T PRK07904 34 ARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAGGDVDVAIVAFGLL 98 (253)
T ss_pred CeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhcCCCCEEEEeeecC
Confidence 4677777765420 0 0 01257899999999998766654 689999999865
No 254
>PRK07791 short chain dehydrogenase; Provisional
Probab=89.37 E-value=0.46 Score=40.45 Aligned_cols=33 Identities=12% Similarity=0.075 Sum_probs=27.0
Q ss_pred CCCEEEEeCCCHHHHHHHhh-------cCcEEEecccccc
Q psy1304 105 DIPIIIADLKNESSILIMAK-------KCRVILNCVGPYT 137 (184)
Q Consensus 105 ~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGPf~ 137 (184)
++.++.+|+.|++++.++++ +.|++||++|.+.
T Consensus 65 ~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAG~~~ 104 (286)
T PRK07791 65 EAVANGDDIADWDGAANLVDAAVETFGGLDVLVNNAGILR 104 (286)
T ss_pred ceEEEeCCCCCHHHHHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 45688899999999988775 3699999999653
No 255
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=89.35 E-value=0.39 Score=38.59 Aligned_cols=59 Identities=17% Similarity=0.180 Sum_probs=39.2
Q ss_pred hhhhhhhCCCCCceeEEeeeecccccc----cCCCCCCEEEEeCCCHHHHHHHhh-------cCcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYR----ENLIDIPIIIADLKNESSILIMAK-------KCRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~----~~~~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGPf 136 (184)
++.+|++.. .++.+.+|+.+... ....++.++.+|+.|.+++.++++ +.|+||||+|..
T Consensus 22 la~~l~~~g----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 91 (245)
T PRK12936 22 IARLLHAQG----AIVGLHGTRVEKLEALAAELGERVKIFPANLSDRDEVKALGQKAEADLEGVDILVNNAGIT 91 (245)
T ss_pred HHHHHHHCC----CEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 556666543 35666665542111 011357788999999999988865 479999999953
No 256
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=89.22 E-value=0.23 Score=36.90 Aligned_cols=32 Identities=9% Similarity=0.347 Sum_probs=26.7
Q ss_pred CCCEEEEeCCCHHHHHHHhhc-------CcEEEeccccc
Q psy1304 105 DIPIIIADLKNESSILIMAKK-------CRVILNCVGPY 136 (184)
Q Consensus 105 ~v~~v~vDv~D~~sL~a~l~~-------~dVVIN~aGPf 136 (184)
++.++.+|+.+++++++++.. .|.|||++|+.
T Consensus 54 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~ag~~ 92 (180)
T smart00822 54 EVTVVACDVADRAALAAALAAIPARLGPLRGVIHAAGVL 92 (180)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHcCCeeEEEEccccC
Confidence 456788999999999988765 49999999854
No 257
>KOG1430|consensus
Probab=89.02 E-value=1.1 Score=41.26 Aligned_cols=89 Identities=18% Similarity=0.195 Sum_probs=61.3
Q ss_pred ccccCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeeccc---cccc----CCCCCCEEEEeCCCHHHH
Q psy1304 47 IGESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDC---LYRE----NLIDIPIIIADLKNESSI 119 (184)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~---lg~~----~~~~v~~v~vDv~D~~sL 119 (184)
|.+-++|=|+- ++.+|.+..+. ..|-++-.... ...+ .-..++..++|+.|...+
T Consensus 9 VtGG~GflG~h----------------lv~~L~~~~~~--~~irv~D~~~~~~~~~~e~~~~~~~~v~~~~~D~~~~~~i 70 (361)
T KOG1430|consen 9 VTGGSGFLGQH----------------LVQALLENELK--LEIRVVDKTPTQSNLPAELTGFRSGRVTVILGDLLDANSI 70 (361)
T ss_pred EECCccHHHHH----------------HHHHHHhcccc--cEEEEeccCccccccchhhhcccCCceeEEecchhhhhhh
Confidence 34556677766 66777766654 55555442211 0000 126688999999999999
Q ss_pred HHHhhcCcEEEeccccccccc---------------hHHHHHHHHcCCC
Q psy1304 120 LIMAKKCRVILNCVGPYTWYG---------------EAVVKACIEAKTH 153 (184)
Q Consensus 120 ~a~l~~~dVVIN~aGPf~~~g---------------~~VaeACieAGth 153 (184)
...+.++-||..+++|..... ..++++|.++|+.
T Consensus 71 ~~a~~~~~Vvh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~ 119 (361)
T KOG1430|consen 71 SNAFQGAVVVHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVK 119 (361)
T ss_pred hhhccCceEEEeccccCccccccchhhheeecchhHHHHHHHHHHhCCC
Confidence 999999966666677765443 6899999999998
No 258
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=88.84 E-value=0.64 Score=37.26 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=27.7
Q ss_pred CCCCEEEEeCCCHHHHHHHhh-------cCcEEEeccccc
Q psy1304 104 IDIPIIIADLKNESSILIMAK-------KCRVILNCVGPY 136 (184)
Q Consensus 104 ~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGPf 136 (184)
.++.++.+|+.|++++.++++ ..|+|||++|..
T Consensus 50 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 89 (242)
T TIGR01829 50 FDFRVVEGDVSSFESCKAAVAKVEAELGPIDVLVNNAGIT 89 (242)
T ss_pred CceEEEEecCCCHHHHHHHHHHHHHHcCCCcEEEECCCCC
Confidence 457799999999999988776 379999999854
No 259
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=88.70 E-value=0.82 Score=42.28 Aligned_cols=49 Identities=8% Similarity=0.091 Sum_probs=34.8
Q ss_pred CCCEEEEeCCCHHHHHHHhhcCcEEEecccccc---c---------c----chHHHHHHHHcCCCEeeCC
Q psy1304 105 DIPIIIADLKNESSILIMAKKCRVILNCVGPYT---W---------Y----GEAVVKACIEAKTHHVDIT 158 (184)
Q Consensus 105 ~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~---~---------~----g~~VaeACieAGthYVDlt 158 (184)
+++++..|+.+. .+.++|+|||||++.. . . ..+++++|.+.|+++|-++
T Consensus 169 ~~~~~~~Di~~~-----~~~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~r~V~~S 233 (436)
T PLN02166 169 RFELIRHDVVEP-----ILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTS 233 (436)
T ss_pred ceEEEECccccc-----cccCCCEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence 456677777553 4578999999998432 1 0 1689999999998877554
No 260
>PRK06940 short chain dehydrogenase; Provisional
Probab=88.61 E-value=0.58 Score=39.50 Aligned_cols=61 Identities=11% Similarity=0.064 Sum_probs=41.3
Q ss_pred hhhhhhhCC-CCCceeEEeeeeccccccc-------CCCCCCEEEEeCCCHHHHHHHhh------cCcEEEeccccc
Q psy1304 74 PSAYKADAP-TSNLTRLGLLGARDCLYRE-------NLIDIPIIIADLKNESSILIMAK------KCRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~-~~~~~~iaLAGrr~~lg~~-------~~~~v~~v~vDv~D~~sL~a~l~------~~dVVIN~aGPf 136 (184)
|-.++++.. .+ .++.+.+|+.+.... ...++.++.+|+.|++++.++++ ..|++||++|.+
T Consensus 13 IG~~la~~l~~G--~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~li~nAG~~ 87 (275)
T PRK06940 13 IGQAIARRVGAG--KKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPVTGLVHTAGVS 87 (275)
T ss_pred HHHHHHHHHhCC--CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 445555222 34 688888876432111 11346789999999999998886 479999999954
No 261
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=88.59 E-value=1.5 Score=32.00 Aligned_cols=93 Identities=13% Similarity=0.103 Sum_probs=58.4
Q ss_pred hhhhhCCCCCceeE-EeeeecccccccCC--CCCCEEEEeCCCHHHHHHHhh--cCcEEEeccccccccchHHHHHHHHc
Q psy1304 76 AYKADAPTSNLTRL-GLLGARDCLYRENL--IDIPIIIADLKNESSILIMAK--KCRVILNCVGPYTWYGEAVVKACIEA 150 (184)
Q Consensus 76 ~~La~~~~~~~~~i-aLAGrr~~lg~~~~--~~v~~v~vDv~D~~sL~a~l~--~~dVVIN~aGPf~~~g~~VaeACieA 150 (184)
.++.+..|+ .++ ++..++.+...... -.++ .. +| ++++++ +.|+|+-|..+... ..++..|+++
T Consensus 17 ~~~~~~~~~--~~v~~v~d~~~~~~~~~~~~~~~~--~~--~~---~~~ll~~~~~D~V~I~tp~~~h--~~~~~~~l~~ 85 (120)
T PF01408_consen 17 RALLRSSPD--FEVVAVCDPDPERAEAFAEKYGIP--VY--TD---LEELLADEDVDAVIIATPPSSH--AEIAKKALEA 85 (120)
T ss_dssp HHHHHTTTT--EEEEEEECSSHHHHHHHHHHTTSE--EE--SS---HHHHHHHTTESEEEEESSGGGH--HHHHHHHHHT
T ss_pred HHHHhcCCC--cEEEEEEeCCHHHHHHHHHHhccc--ch--hH---HHHHHHhhcCCEEEEecCCcch--HHHHHHHHHc
Confidence 445567677 665 35555443222111 2233 22 22 667777 79999999866544 5999999999
Q ss_pred CCC-Eee--CCCChHHHHHHHHHhHHHHHHcCCeee
Q psy1304 151 KTH-HVD--ITGEPYFMEYMQYEYNTRAQESEVQKC 183 (184)
Q Consensus 151 Gth-YVD--ltGE~~~~~~ii~~lhe~AkaaGV~Iv 183 (184)
|.| +++ ++-+.+ +. +++-+.|+++|+.++
T Consensus 86 g~~v~~EKP~~~~~~---~~-~~l~~~a~~~~~~~~ 117 (120)
T PF01408_consen 86 GKHVLVEKPLALTLE---EA-EELVEAAKEKGVKVM 117 (120)
T ss_dssp TSEEEEESSSSSSHH---HH-HHHHHHHHHHTSCEE
T ss_pred CCEEEEEcCCcCCHH---HH-HHHHHHHHHhCCEEE
Confidence 999 777 344333 43 567778888887764
No 262
>PRK12827 short chain dehydrogenase; Provisional
Probab=88.56 E-value=0.56 Score=37.67 Aligned_cols=34 Identities=12% Similarity=0.079 Sum_probs=28.8
Q ss_pred CCCCEEEEeCCCHHHHHHHhh-------cCcEEEecccccc
Q psy1304 104 IDIPIIIADLKNESSILIMAK-------KCRVILNCVGPYT 137 (184)
Q Consensus 104 ~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGPf~ 137 (184)
.++.++.+|+.|++++.++++ +.|.|||++|+..
T Consensus 59 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~ 99 (249)
T PRK12827 59 GKALGLAFDVRDFAATRAALDAGVEEFGRLDILVNNAGIAT 99 (249)
T ss_pred CcEEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCCCCC
Confidence 457789999999999998875 5899999999754
No 263
>PRK12743 oxidoreductase; Provisional
Probab=88.53 E-value=0.53 Score=38.77 Aligned_cols=59 Identities=17% Similarity=0.075 Sum_probs=39.4
Q ss_pred hhhhhhhCCCCCceeEEeeeeccc-ccc-------cCCCCCCEEEEeCCCHHHHHHHhhc-------CcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDC-LYR-------ENLIDIPIIIADLKNESSILIMAKK-------CRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~-lg~-------~~~~~v~~v~vDv~D~~sL~a~l~~-------~dVVIN~aGPf 136 (184)
++.+|++.. .++.+..++.. ... ....++.++.+|+.|+++++++++. .|+||+++|..
T Consensus 18 ~a~~l~~~G----~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li~~ag~~ 91 (256)
T PRK12743 18 CALLLAQQG----FDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLGRIDVLVNNAGAM 91 (256)
T ss_pred HHHHHHHCC----CEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 566666543 56666654331 110 0114578999999999998888763 69999999964
No 264
>PRK06349 homoserine dehydrogenase; Provisional
Probab=88.06 E-value=1.6 Score=40.32 Aligned_cols=61 Identities=16% Similarity=0.164 Sum_probs=45.5
Q ss_pred HHHHhh--cCcEEEeccccccccchHHHHHHHHcCCCEeeCCCChHHHHHHHHHhHHHHHHcCCee
Q psy1304 119 ILIMAK--KCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVQK 182 (184)
Q Consensus 119 L~a~l~--~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltGE~~~~~~ii~~lhe~AkaaGV~I 182 (184)
+++++. +.|+||.|.|+. ......+++|+++|.|-| |.+.........++.+.|+++|+.+
T Consensus 64 ~~~ll~d~~iDvVve~tg~~-~~~~~~~~~aL~~GkhVV--taNK~~~a~~~~eL~~lA~~~gv~l 126 (426)
T PRK06349 64 PEELVNDPDIDIVVELMGGI-EPARELILKALEAGKHVV--TANKALLAVHGAELFAAAEEKGVDL 126 (426)
T ss_pred HHHHhhCCCCCEEEECCCCc-hHHHHHHHHHHHCCCeEE--EcCHHHHHHHHHHHHHHHHHcCCcE
Confidence 456665 479999999876 345789999999999987 4444333333478999999999865
No 265
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=87.99 E-value=0.64 Score=37.66 Aligned_cols=32 Identities=16% Similarity=0.084 Sum_probs=26.8
Q ss_pred CCCEEEEeCCCHHHHHHHhh-------cCcEEEeccccc
Q psy1304 105 DIPIIIADLKNESSILIMAK-------KCRVILNCVGPY 136 (184)
Q Consensus 105 ~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGPf 136 (184)
++..+.+|+.|.+++.++++ +.|+||||+|..
T Consensus 54 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~ag~~ 92 (246)
T PRK12938 54 DFIASEGNVGDWDSTKAAFDKVKAEVGEIDVLVNNAGIT 92 (246)
T ss_pred cEEEEEcCCCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 45677899999999988876 479999999964
No 266
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=87.89 E-value=0.46 Score=38.89 Aligned_cols=61 Identities=15% Similarity=0.139 Sum_probs=42.1
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc------CCCCCCEEEEeCCCHHHHHHHhh--------cCcEEEeccccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE------NLIDIPIIIADLKNESSILIMAK--------KCRVILNCVGPYTW 138 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~------~~~~v~~v~vDv~D~~sL~a~l~--------~~dVVIN~aGPf~~ 138 (184)
++.+|++.. .++.+.+|+.+.... .....+++.+|+.|+++++++++ +.|++||++|....
T Consensus 12 ia~~l~~~G----a~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV~~a~~~~~ 86 (241)
T PF13561_consen 12 IARALAEEG----ANVILTDRNEEKLADALEELAKEYGAEVIQCDLSDEESVEALFDEAVERFGGRIDILVNNAGISPP 86 (241)
T ss_dssp HHHHHHHTT----EEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTTSHHHHHHHHHHHHHHHCSSESEEEEEEESCTG
T ss_pred HHHHHHHCC----CEEEEEeCChHHHHHHHHHHHHHcCCceEeecCcchHHHHHHHHHHHhhcCCCeEEEEeccccccc
Confidence 444455444 889999987653100 00224579999999999998854 46999999987654
No 267
>PLN00015 protochlorophyllide reductase
Probab=87.89 E-value=0.67 Score=39.85 Aligned_cols=60 Identities=10% Similarity=0.001 Sum_probs=40.4
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc-------CCCCCCEEEEeCCCHHHHHHHhh-------cCcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE-------NLIDIPIIIADLKNESSILIMAK-------KCRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~-------~~~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGPf 136 (184)
++.+|++... -++.+.+|+.+.... ...++.++.+|+.|.++++++++ ..|++||++|.+
T Consensus 13 ia~~l~~~G~---~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~lInnAG~~ 86 (308)
T PLN00015 13 TAKALAETGK---WHVVMACRDFLKAERAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRSGRPLDVLVCNAAVY 86 (308)
T ss_pred HHHHHHHCCC---CEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHhcCCCCCEEEECCCcC
Confidence 5556665541 356777776532211 11356788999999999988875 369999999954
No 268
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=87.84 E-value=2.3 Score=37.86 Aligned_cols=59 Identities=10% Similarity=0.156 Sum_probs=42.3
Q ss_pred HHHHH-hhcCcEEEeccccccccchHHHHHHHHcCCCEeeCC-C---ChHHHHHHHHHhHHHHHHcCCee
Q psy1304 118 SILIM-AKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDIT-G---EPYFMEYMQYEYNTRAQESEVQK 182 (184)
Q Consensus 118 sL~a~-l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDlt-G---E~~~~~~ii~~lhe~AkaaGV~I 182 (184)
+++++ ...+|+||.||||-.. ....+.++++|+|++=++ | |..+. .++.+.|++.|..+
T Consensus 54 ~l~~ll~~~~DlVVE~A~~~av--~e~~~~iL~~g~dlvv~SvGALaD~~~~----~~l~~~A~~~g~~i 117 (267)
T PRK13301 54 GLPGLLAWRPDLVVEAAGQQAI--AEHAEGCLTAGLDMIICSAGALADDALR----ARLIAAAEAGGARI 117 (267)
T ss_pred CHHHHhhcCCCEEEECCCHHHH--HHHHHHHHhcCCCEEEEChhHhcCHHHH----HHHHHHHHhCCCEE
Confidence 36665 5779999999987644 477788999999987766 3 44444 35667788877544
No 269
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.67 E-value=1.1 Score=36.29 Aligned_cols=31 Identities=19% Similarity=0.260 Sum_probs=26.3
Q ss_pred CCCEEEEeCCCHHHHHHHhh-------cCcEEEecccc
Q psy1304 105 DIPIIIADLKNESSILIMAK-------KCRVILNCVGP 135 (184)
Q Consensus 105 ~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGP 135 (184)
+..++.+|+.|++++..+++ +.|+|||++|.
T Consensus 57 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 94 (252)
T PRK06077 57 EGIGVLADVSTREGCETLAKATIDRYGVADILVNNAGL 94 (252)
T ss_pred eeEEEEeccCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 45688899999999988877 46999999983
No 270
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=87.62 E-value=0.91 Score=36.69 Aligned_cols=59 Identities=15% Similarity=0.093 Sum_probs=39.3
Q ss_pred hhhhhhhCCCCCceeEEeeeecccccc-------cCCCCCCEEEEeCCCHHHHHHHhh-------cCcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYR-------ENLIDIPIIIADLKNESSILIMAK-------KCRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~-------~~~~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGPf 136 (184)
++.+|++. + .++.+..|+.+... ....++.++++|+.|++++.++++ +.|+||+++|..
T Consensus 17 l~~~l~~~--g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~a~~~ 89 (255)
T TIGR01963 17 IALALAAA--G--ANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGGLDILVNNAGIQ 89 (255)
T ss_pred HHHHHHHC--C--CEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 56666654 3 46667777543211 011457789999999997766554 469999999864
No 271
>PRK06924 short chain dehydrogenase; Provisional
Probab=87.55 E-value=0.57 Score=38.09 Aligned_cols=58 Identities=9% Similarity=0.011 Sum_probs=38.1
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccc-----ccCCCCCCEEEEeCCCHHHHHHHhhcCc-----------EEEecccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLY-----RENLIDIPIIIADLKNESSILIMAKKCR-----------VILNCVGP 135 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg-----~~~~~~v~~v~vDv~D~~sL~a~l~~~d-----------VVIN~aGP 135 (184)
++.+|++.. .++.+.+|+.... .....++.++.+|+.|+++++++++.+. .+|+++|-
T Consensus 17 ia~~l~~~g----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ag~ 90 (251)
T PRK06924 17 IANQLLEKG----THVISISRTENKELTKLAEQYNSNLTFHSLDLQDVHELETNFNEILSSIQEDNVSSIHLINNAGM 90 (251)
T ss_pred HHHHHHhcC----CEEEEEeCCchHHHHHHHhccCCceEEEEecCCCHHHHHHHHHHHHHhcCcccCCceEEEEccee
Confidence 666666543 4566777764211 1112457789999999999998887531 68888774
No 272
>PRK08703 short chain dehydrogenase; Provisional
Probab=87.51 E-value=1.7 Score=35.23 Aligned_cols=58 Identities=21% Similarity=0.136 Sum_probs=35.2
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc--------CCCCCCEEEEeCCC--HHHHHHHh--------hcCcEEEecccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE--------NLIDIPIIIADLKN--ESSILIMA--------KKCRVILNCVGP 135 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~--------~~~~v~~v~vDv~D--~~sL~a~l--------~~~dVVIN~aGP 135 (184)
++.+|++. + .++.+.+|+...... ......++.+|+.| .+++..++ ...|+||||+|.
T Consensus 22 la~~l~~~--g--~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~~~~~id~vi~~ag~ 97 (239)
T PRK08703 22 VAKAYAAA--G--ATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEATQGKLDGIVHCAGY 97 (239)
T ss_pred HHHHHHHc--C--CEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHHhCCCCCEEEEeccc
Confidence 44555543 3 678888876632110 11346678899865 44555443 357999999995
No 273
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=87.44 E-value=0.76 Score=36.90 Aligned_cols=58 Identities=7% Similarity=-0.039 Sum_probs=38.5
Q ss_pred hhhhhhhCCCCCceeEEeeeeccc-----ccc---cCCCCCCEEEEeCCCHHHHHHHhhc-------CcEEEecccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDC-----LYR---ENLIDIPIIIADLKNESSILIMAKK-------CRVILNCVGP 135 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~-----lg~---~~~~~v~~v~vDv~D~~sL~a~l~~-------~dVVIN~aGP 135 (184)
++.+|++.. .++.+..|+.. ... ....++.++.+|+.|++++.+++++ .|+|||++|-
T Consensus 18 la~~l~~~g----~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id~vi~~ag~ 90 (245)
T PRK12824 18 IARELLNDG----YRVIATYFSGNDCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEGPVDILVNNAGI 90 (245)
T ss_pred HHHHHHHcC----CEEEEEeCCcHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 555565543 45666666531 000 0113578999999999999888764 7999999983
No 274
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=87.42 E-value=1.3 Score=40.36 Aligned_cols=61 Identities=13% Similarity=0.045 Sum_probs=43.8
Q ss_pred HHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEeeCCCChHHH--HHHHHHhHHHHHHc-CCeee
Q psy1304 119 ILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFM--EYMQYEYNTRAQES-EVQKC 183 (184)
Q Consensus 119 L~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltGE~~~~--~~ii~~lhe~Akaa-GV~Iv 183 (184)
...++.+.|+|+-|.++... .+.+..|+++|.|-||... + +. .+....+++.|++. |+.++
T Consensus 54 ~~e~l~~iDVViIctPs~th--~~~~~~~L~aG~NVV~s~~-~-h~~~p~~~~~ld~AAk~~g~vsvi 117 (324)
T TIGR01921 54 DEKHLDDVDVLILCMGSATD--IPEQAPYFAQFANTVDSFD-N-HRDIPRHRQVMDAAAKAAGNVSVI 117 (324)
T ss_pred HHHhccCCCEEEEcCCCccC--HHHHHHHHHcCCCEEECCC-c-ccCCHHHHHHHHHHHHHcCCEEEE
Confidence 34456889999999755444 6888899999999999964 2 22 23346788888875 56654
No 275
>PRK06953 short chain dehydrogenase; Provisional
Probab=87.38 E-value=0.76 Score=37.02 Aligned_cols=59 Identities=10% Similarity=0.013 Sum_probs=40.4
Q ss_pred hhhhhhhCCCCCceeEEeeeecccccccC-CCCCCEEEEeCCCHHHHHHHhh-----cCcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYREN-LIDIPIIIADLKNESSILIMAK-----KCRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~~-~~~v~~v~vDv~D~~sL~a~l~-----~~dVVIN~aGPf 136 (184)
++.+|++. + .++.+.+|+.+..++. ....+++.+|+.|.+++++++. ..|+|||++|.+
T Consensus 17 la~~L~~~--G--~~v~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~d~vi~~ag~~ 81 (222)
T PRK06953 17 FVRQYRAD--G--WRVIATARDAAALAALQALGAEALALDVADPASVAGLAWKLDGEALDAAVYVAGVY 81 (222)
T ss_pred HHHHHHhC--C--CEEEEEECCHHHHHHHHhccceEEEecCCCHHHHHHHHHHhcCCCCCEEEECCCcc
Confidence 55566543 4 6777777765322110 1245789999999999998753 379999999986
No 276
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=87.32 E-value=2.2 Score=38.72 Aligned_cols=90 Identities=16% Similarity=0.064 Sum_probs=56.0
Q ss_pred ccccCccccceeeecccccCCCCCCCchhhhhhh-CCCCCceeEE-eeeeccccccc-CCCCCCEEEEeCCCHHHHHHHh
Q psy1304 47 IGESQPFRGQTLSVQDKIRPGRGSNPRPSAYKAD-APTSNLTRLG-LLGARDCLYRE-NLIDIPIIIADLKNESSILIMA 123 (184)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~-~~~~~~~~ia-LAGrr~~lg~~-~~~~v~~v~vDv~D~~sL~a~l 123 (184)
|.+.+++.|+. +..-|+. -.|. ..+. +++.+. .|.. .....+...-++ +++ .+
T Consensus 12 VvGAtG~vG~e----------------LlrlL~~~~hP~--~~l~~las~rs-aGk~~~~~~~~~~v~~~-~~~----~~ 67 (344)
T PLN02383 12 IVGVTGAVGQE----------------FLSVLTDRDFPY--SSLKMLASARS-AGKKVTFEGRDYTVEEL-TED----SF 67 (344)
T ss_pred EEcCCChHHHH----------------HHHHHHhCCCCc--ceEEEEEccCC-CCCeeeecCceeEEEeC-CHH----HH
Confidence 68889999988 6677774 3565 4553 344332 2211 112233333333 222 24
Q ss_pred hcCcEEEeccccccccchHHHHHHHHcCCCEeeCCCChH
Q psy1304 124 KKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPY 162 (184)
Q Consensus 124 ~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltGE~~ 162 (184)
+++|+|+-|+|- .....++..+.++|+..||++++..
T Consensus 68 ~~~D~vf~a~p~--~~s~~~~~~~~~~g~~VIDlS~~fR 104 (344)
T PLN02383 68 DGVDIALFSAGG--SISKKFGPIAVDKGAVVVDNSSAFR 104 (344)
T ss_pred cCCCEEEECCCc--HHHHHHHHHHHhCCCEEEECCchhh
Confidence 789999999862 3456777778889999999998653
No 277
>PRK07035 short chain dehydrogenase; Provisional
Probab=87.23 E-value=0.54 Score=38.35 Aligned_cols=58 Identities=5% Similarity=-0.047 Sum_probs=38.9
Q ss_pred hhhhhhhCCCCCceeEEeeeecccccc-------cCCCCCCEEEEeCCCHHHHHHHhhc-------CcEEEecccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYR-------ENLIDIPIIIADLKNESSILIMAKK-------CRVILNCVGP 135 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~-------~~~~~v~~v~vDv~D~~sL~a~l~~-------~dVVIN~aGP 135 (184)
++.+|++. + -++.+.+|+..... +...+..++++|+.|.+++++++++ .|+|||++|.
T Consensus 24 l~~~l~~~--G--~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~ag~ 95 (252)
T PRK07035 24 IAKLLAQQ--G--AHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERHGRLDILVNNAAA 95 (252)
T ss_pred HHHHHHHC--C--CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 44555544 3 46777777543111 0113467889999999999887764 7999999983
No 278
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=86.99 E-value=2 Score=38.19 Aligned_cols=65 Identities=12% Similarity=0.214 Sum_probs=49.4
Q ss_pred EeeeecccccccCCCCCCEEEEeCCCHHHHHHHhhc--CcEEEeccccccc-cchHHHHHHHHcCCCEeeC
Q psy1304 90 GLLGARDCLYRENLIDIPIIIADLKNESSILIMAKK--CRVILNCVGPYTW-YGEAVVKACIEAKTHHVDI 157 (184)
Q Consensus 90 aLAGrr~~lg~~~~~~v~~v~vDv~D~~sL~a~l~~--~dVVIN~aGPf~~-~g~~VaeACieAGthYVDl 157 (184)
.++|+-..+.. ...+.+.+---+.+.|.++++. .|+||++.=||.. ...+.+++|-++|+.|+=+
T Consensus 32 s~t~~g~~l~~---~~~~~~~~G~l~~e~l~~~l~e~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~ 99 (257)
T COG2099 32 SLTGYGAKLAE---QIGPVRVGGFLGAEGLAAFLREEGIDLLIDATHPYAARISQNAARAAKETGIPYLRL 99 (257)
T ss_pred Ecccccccchh---ccCCeeecCcCCHHHHHHHHHHcCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEE
Confidence 34444444433 3344666677789999999985 8999999999964 5699999999999999754
No 279
>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.
Probab=86.64 E-value=1.6 Score=40.31 Aligned_cols=64 Identities=14% Similarity=0.183 Sum_probs=45.0
Q ss_pred HHHHHHHhhc--CcEEEeccccccc--cchHHHHHHHHcCCCEeeCCCChHHHHHHHHHhHHHHHHcCCeee
Q psy1304 116 ESSILIMAKK--CRVILNCVGPYTW--YGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVQKC 183 (184)
Q Consensus 116 ~~sL~a~l~~--~dVVIN~aGPf~~--~g~~VaeACieAGthYVDltGE~~~~~~ii~~lhe~AkaaGV~Iv 183 (184)
++.+.+.++. +||+||-. |--. ...-=+.||+++||.||..+-. ++-.. .+|.++++++|++++
T Consensus 112 ~~dv~~~lk~~~~dVlvnyl-PvGs~~A~~~YA~AAl~aG~afVN~~P~--~ia~~-p~~a~~f~e~glPi~ 179 (351)
T TIGR03450 112 PVDVVQALKDAKVDVLVSYL-PVGSEEADKFYAQCAIDAGVAFVNALPV--FIASD-PEWAKKFTDAGVPIV 179 (351)
T ss_pred HHHHHHHHHhcCCCEEEECC-ccchHHHHHHHHHHHHHcCCceEeccCc--cccCC-HHHHHHHHHCCCCEe
Confidence 3456666765 89999965 3321 1245577999999999987643 33343 578889999999875
No 280
>PRK06128 oxidoreductase; Provisional
Probab=86.56 E-value=1.1 Score=38.16 Aligned_cols=77 Identities=13% Similarity=0.110 Sum_probs=46.3
Q ss_pred ccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeeccccc---------ccCCCCCCEEEEeCCCHHHHHHH
Q psy1304 52 PFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLY---------RENLIDIPIIIADLKNESSILIM 122 (184)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg---------~~~~~~v~~v~vDv~D~~sL~a~ 122 (184)
.++||+.-|-|- .+|----++.+|++.. .++.+..++++.. .....+..++.+|+.|+++++++
T Consensus 52 ~l~~k~vlITGa---s~gIG~~~a~~l~~~G----~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~ 124 (300)
T PRK06128 52 RLQGRKALITGA---DSGIGRATAIAFAREG----ADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQL 124 (300)
T ss_pred ccCCCEEEEecC---CCcHHHHHHHHHHHcC----CEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH
Confidence 466777777762 1221112444555443 4566655432110 00113466889999999999888
Q ss_pred hh-------cCcEEEecccc
Q psy1304 123 AK-------KCRVILNCVGP 135 (184)
Q Consensus 123 l~-------~~dVVIN~aGP 135 (184)
++ +.|+|||++|.
T Consensus 125 ~~~~~~~~g~iD~lV~nAg~ 144 (300)
T PRK06128 125 VERAVKELGGLDILVNIAGK 144 (300)
T ss_pred HHHHHHHhCCCCEEEECCcc
Confidence 76 46999999995
No 281
>KOG1200|consensus
Probab=86.56 E-value=0.7 Score=40.57 Aligned_cols=60 Identities=13% Similarity=0.161 Sum_probs=40.3
Q ss_pred hhhhhhhCCCCCceeEEeeeecccccccC------CCCCCEEEEeCCCHHHHHHHhhc-------CcEEEecccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYREN------LIDIPIIIADLKNESSILIMAKK-------CRVILNCVGPYT 137 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~~------~~~v~~v~vDv~D~~sL~a~l~~-------~dVVIN~aGPf~ 137 (184)
|+-.||+.. .|++.+-++..-.++. -.+...+.||+.++.++..++++ .+++|||+|--.
T Consensus 30 ia~~la~~G----arv~v~dl~~~~A~ata~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~k~~g~psvlVncAGItr 102 (256)
T KOG1200|consen 30 IAQLLAKKG----ARVAVADLDSAAAEATAGDLGGYGDHSAFSCDVSKAHDVQNTLEEMEKSLGTPSVLVNCAGITR 102 (256)
T ss_pred HHHHHHhcC----cEEEEeecchhhHHHHHhhcCCCCccceeeeccCcHHHHHHHHHHHHHhcCCCcEEEEcCcccc
Confidence 444444544 6777777655322111 14567899999999988886653 799999999653
No 282
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=86.53 E-value=0.53 Score=40.80 Aligned_cols=60 Identities=10% Similarity=-0.027 Sum_probs=40.4
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc-------CCCCCCEEEEeCCCHHHHHHHhh-------cCcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE-------NLIDIPIIIADLKNESSILIMAK-------KCRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~-------~~~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGPf 136 (184)
++..|++..+ .++.+.+|+.....+ ...++.++.+|+.|.++++++++ +.|++||++|.+
T Consensus 19 ia~~L~~~G~---~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~iD~lI~nAG~~ 92 (314)
T TIGR01289 19 AAKALAATGE---WHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRESGRPLDALVCNAAVY 92 (314)
T ss_pred HHHHHHHcCC---CEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEECCCcc
Confidence 5555555441 367777776542211 11346788899999999988875 379999999954
No 283
>PRK06720 hypothetical protein; Provisional
Probab=86.52 E-value=1.1 Score=36.29 Aligned_cols=78 Identities=10% Similarity=0.109 Sum_probs=48.0
Q ss_pred cccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccc-------cCCCCCCEEEEeCCCHHHHHHHhh-
Q psy1304 53 FRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYR-------ENLIDIPIIIADLKNESSILIMAK- 124 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~-------~~~~~v~~v~vDv~D~~sL~a~l~- 124 (184)
++||..-|.|- ++|-..-++.+|++.. .++.+.+++..... .......++.+|+.|++++.++++
T Consensus 14 l~gk~~lVTGa---~~GIG~aia~~l~~~G----~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~ 86 (169)
T PRK06720 14 LAGKVAIVTGG---GIGIGRNTALLLAKQG----AKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISI 86 (169)
T ss_pred cCCCEEEEecC---CChHHHHHHHHHHHCC----CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 56777766662 1221112455555443 56777776543111 011345678999999999888663
Q ss_pred ------cCcEEEecccccc
Q psy1304 125 ------KCRVILNCVGPYT 137 (184)
Q Consensus 125 ------~~dVVIN~aGPf~ 137 (184)
+.|++||++|-+.
T Consensus 87 ~~~~~G~iDilVnnAG~~~ 105 (169)
T PRK06720 87 TLNAFSRIDMLFQNAGLYK 105 (169)
T ss_pred HHHHcCCCCEEEECCCcCC
Confidence 5899999998543
No 284
>PRK08303 short chain dehydrogenase; Provisional
Probab=86.36 E-value=0.83 Score=39.72 Aligned_cols=75 Identities=13% Similarity=0.118 Sum_probs=46.9
Q ss_pred cccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeeccccc----------c-------cCCCCCCEEEEeCCC
Q psy1304 53 FRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLY----------R-------ENLIDIPIIIADLKN 115 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg----------~-------~~~~~v~~v~vDv~D 115 (184)
++||+.-|.|- ++|----++.+|++. + .++.+.+|+.... . ....++.++++|+.|
T Consensus 6 l~~k~~lITGg---s~GIG~aia~~la~~--G--~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~ 78 (305)
T PRK08303 6 LRGKVALVAGA---TRGAGRGIAVELGAA--G--ATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLV 78 (305)
T ss_pred CCCCEEEEeCC---CchHHHHHHHHHHHC--C--CEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCC
Confidence 56777777662 123111244455443 4 6788888863110 0 001245688999999
Q ss_pred HHHHHHHhhc-------CcEEEecc-c
Q psy1304 116 ESSILIMAKK-------CRVILNCV-G 134 (184)
Q Consensus 116 ~~sL~a~l~~-------~dVVIN~a-G 134 (184)
+++++++++. .|++||++ |
T Consensus 79 ~~~v~~~~~~~~~~~g~iDilVnnA~g 105 (305)
T PRK08303 79 PEQVRALVERIDREQGRLDILVNDIWG 105 (305)
T ss_pred HHHHHHHHHHHHHHcCCccEEEECCcc
Confidence 9999988763 69999999 6
No 285
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=86.26 E-value=2.2 Score=36.56 Aligned_cols=61 Identities=13% Similarity=0.053 Sum_probs=44.4
Q ss_pred HHHHHHhhc--CcEEEeccccccccchHHHHHHHHcCCC-Eee--CCCChHHHHHHHHHhHHHHHHcCCeee
Q psy1304 117 SSILIMAKK--CRVILNCVGPYTWYGEAVVKACIEAKTH-HVD--ITGEPYFMEYMQYEYNTRAQESEVQKC 183 (184)
Q Consensus 117 ~sL~a~l~~--~dVVIN~aGPf~~~g~~VaeACieAGth-YVD--ltGE~~~~~~ii~~lhe~AkaaGV~Iv 183 (184)
.+++++++. .|+|+.|..|...+ .++.+|+++|.| +++ ++-.. .+. +++-+.|+++|+.++
T Consensus 57 ~~~~~ll~~~~iD~V~Iatp~~~H~--e~~~~AL~aGkhVl~EKPla~t~---~ea-~~l~~~a~~~~~~l~ 122 (342)
T COG0673 57 TDLEELLADPDIDAVYIATPNALHA--ELALAALEAGKHVLCEKPLALTL---EEA-EELVELARKAGVKLM 122 (342)
T ss_pred CCHHHHhcCCCCCEEEEcCCChhhH--HHHHHHHhcCCEEEEcCCCCCCH---HHH-HHHHHHHHHcCCcee
Confidence 347778876 69999999666554 788999999999 666 33332 344 467788888887764
No 286
>PRK08324 short chain dehydrogenase; Validated
Probab=86.03 E-value=0.48 Score=45.90 Aligned_cols=80 Identities=13% Similarity=0.138 Sum_probs=50.2
Q ss_pred cCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeeccccccc---CC---CCCCEEEEeCCCHHHHHHHh
Q psy1304 50 SQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRE---NL---IDIPIIIADLKNESSILIMA 123 (184)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~---~~---~~v~~v~vDv~D~~sL~a~l 123 (184)
..++.||++-|.|-- .+----++..|++. + .++.+.+|+...... .. .++.++.+|+.|++++.+++
T Consensus 417 ~~~l~gk~vLVTGas---ggIG~~la~~L~~~--G--a~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~ 489 (681)
T PRK08324 417 PKPLAGKVALVTGAA---GGIGKATAKRLAAE--G--ACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAF 489 (681)
T ss_pred CcCCCCCEEEEecCC---CHHHHHHHHHHHHC--c--CEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHH
Confidence 345778887776611 11001144444443 3 578888776532110 00 36778999999999998887
Q ss_pred h-------cCcEEEeccccc
Q psy1304 124 K-------KCRVILNCVGPY 136 (184)
Q Consensus 124 ~-------~~dVVIN~aGPf 136 (184)
+ +.|+|||++|..
T Consensus 490 ~~~~~~~g~iDvvI~~AG~~ 509 (681)
T PRK08324 490 EEAALAFGGVDIVVSNAGIA 509 (681)
T ss_pred HHHHHHcCCCCEEEECCCCC
Confidence 6 579999999954
No 287
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=85.96 E-value=1.3 Score=40.17 Aligned_cols=95 Identities=9% Similarity=-0.006 Sum_probs=59.8
Q ss_pred hcccc-ccccCccccceeeecccccCCCCCCCchhhhhhh-CCCCCceeEEeeeecccccccC-CCCCCEEEEeCCCHHH
Q psy1304 42 RKEDR-IGESQPFRGQTLSVQDKIRPGRGSNPRPSAYKAD-APTSNLTRLGLLGARDCLYREN-LIDIPIIIADLKNESS 118 (184)
Q Consensus 42 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~-~~~~~~~~iaLAGrr~~lg~~~-~~~v~~v~vDv~D~~s 118 (184)
+|+.+ |.+.+++.|+. ....|+. ..|. .+|.+..-++..|..- ....+ +.+. +.+.
T Consensus 3 ~~~~vaIvGATG~vG~e----------------llrlL~~~~hP~--~~l~~laS~~saG~~~~~~~~~-~~v~--~~~~ 61 (336)
T PRK08040 3 EGWNIALLGATGAVGEA----------------LLELLAERQFPV--GELYALASEESAGETLRFGGKS-VTVQ--DAAE 61 (336)
T ss_pred CCCEEEEEccCCHHHHH----------------HHHHHhcCCCCc--eEEEEEEccCcCCceEEECCcc-eEEE--eCch
Confidence 34444 78999999999 7788884 4677 6665544333333211 11112 2222 1111
Q ss_pred HHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEeeCCCCh
Q psy1304 119 ILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEP 161 (184)
Q Consensus 119 L~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltGE~ 161 (184)
..++++|+|+-|++. .....++..+.++|+..||++++.
T Consensus 62 --~~~~~~Dvvf~a~p~--~~s~~~~~~~~~~g~~VIDlS~~f 100 (336)
T PRK08040 62 --FDWSQAQLAFFVAGR--EASAAYAEEATNAGCLVIDSSGLF 100 (336)
T ss_pred --hhccCCCEEEECCCH--HHHHHHHHHHHHCCCEEEECChHh
Confidence 123689999999853 245688888889999999999865
No 288
>PLN02503 fatty acyl-CoA reductase 2
Probab=85.94 E-value=2.7 Score=41.12 Aligned_cols=102 Identities=16% Similarity=0.149 Sum_probs=63.1
Q ss_pred cccccccCccccceeeecccccCCCCC-CCchhhhhhhCCCCCce-eEEeeeecc-----------cc------------
Q psy1304 44 EDRIGESQPFRGQTLSVQDKIRPGRGS-NPRPSAYKADAPTSNLT-RLGLLGARD-----------CL------------ 98 (184)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~r~~~~La~~~~~~~~-~iaLAGrr~-----------~l------------ 98 (184)
.|-|+-.+-|+||++-|.|- -|. -..+++.|.+.+|+ + +|-+.-|.. ++
T Consensus 108 ~~~~~I~~f~~~k~VlVTGa----TGFLGk~LlekLLr~~~~--v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~ 181 (605)
T PLN02503 108 ADGIGIAEFLRGKNFLITGA----TGFLAKVLIEKILRTNPD--VGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQET 181 (605)
T ss_pred cCCcchhhhhcCCEEEEcCC----chHHHHHHHHHHHHhCCC--CcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHh
Confidence 45555566677777777661 110 01255666667777 4 666554421 10
Q ss_pred -ccc----CCCCCCEEEEeCCCH------HHHHHHhhcCcEEEeccccccccc-------------hHHHHHHHHcC
Q psy1304 99 -YRE----NLIDIPIIIADLKNE------SSILIMAKKCRVILNCVGPYTWYG-------------EAVVKACIEAK 151 (184)
Q Consensus 99 -g~~----~~~~v~~v~vDv~D~------~sL~a~l~~~dVVIN~aGPf~~~g-------------~~VaeACieAG 151 (184)
+.. ...++.++..|+.++ +.++.+.+++|+|||||+...... ..++++|.+.+
T Consensus 182 ~g~~~~~~~~~Ki~~v~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~f~~~~~~a~~vNV~GT~nLLelA~~~~ 258 (605)
T PLN02503 182 HGKSYQSFMLSKLVPVVGNVCESNLGLEPDLADEIAKEVDVIINSAANTTFDERYDVAIDINTRGPCHLMSFAKKCK 258 (605)
T ss_pred cCccccccccccEEEEEeeCCCcccCCCHHHHHHHHhcCCEEEECccccccccCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 000 124677899999986 566777888999999998753211 56888887764
No 289
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=85.86 E-value=0.43 Score=38.39 Aligned_cols=32 Identities=19% Similarity=0.332 Sum_probs=27.6
Q ss_pred CCCEEEEeCCCHHHHHHHhhcC-------cEEEeccccc
Q psy1304 105 DIPIIIADLKNESSILIMAKKC-------RVILNCVGPY 136 (184)
Q Consensus 105 ~v~~v~vDv~D~~sL~a~l~~~-------dVVIN~aGPf 136 (184)
++.++.+|+.|++++.++++++ |+|||++|..
T Consensus 52 ~~~~~~~D~~d~~~i~~~~~~~~~~~~~id~vi~~ag~~ 90 (247)
T PRK09730 52 KAFVLQADISDENQVVAMFTAIDQHDEPLAALVNNAGIL 90 (247)
T ss_pred eEEEEEccCCCHHHHHHHHHHHHHhCCCCCEEEECCCCC
Confidence 4678999999999999988864 7999999965
No 290
>PRK11579 putative oxidoreductase; Provisional
Probab=85.48 E-value=2.1 Score=37.77 Aligned_cols=60 Identities=20% Similarity=0.107 Sum_probs=43.0
Q ss_pred HHHHHhh--cCcEEEeccccccccchHHHHHHHHcCCC-Eee--CCCChHHHHHHHHHhHHHHHHcCCeee
Q psy1304 118 SILIMAK--KCRVILNCVGPYTWYGEAVVKACIEAKTH-HVD--ITGEPYFMEYMQYEYNTRAQESEVQKC 183 (184)
Q Consensus 118 sL~a~l~--~~dVVIN~aGPf~~~g~~VaeACieAGth-YVD--ltGE~~~~~~ii~~lhe~AkaaGV~Iv 183 (184)
+++++++ +.|+|+-|..|... ..++..|+++|.| +++ ++-. ..+. +++-+.|+++|+.++
T Consensus 55 ~~~ell~~~~vD~V~I~tp~~~H--~~~~~~al~aGkhVl~EKPla~t---~~ea-~~l~~~a~~~g~~l~ 119 (346)
T PRK11579 55 EPQHLFNDPNIDLIVIPTPNDTH--FPLAKAALEAGKHVVVDKPFTVT---LSQA-RELDALAKSAGRVLS 119 (346)
T ss_pred CHHHHhcCCCCCEEEEcCCcHHH--HHHHHHHHHCCCeEEEeCCCCCC---HHHH-HHHHHHHHHhCCEEE
Confidence 4567775 58999999876654 5899999999999 554 2222 2343 567778899998764
No 291
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=85.44 E-value=1.4 Score=39.57 Aligned_cols=39 Identities=21% Similarity=-0.009 Sum_probs=27.8
Q ss_pred HHHHHHHHcCCCEeeCCCChHHHHHHHHHhHHHHHHcCCeee
Q psy1304 142 AVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVQKC 183 (184)
Q Consensus 142 ~VaeACieAGthYVDltGE~~~~~~ii~~lhe~AkaaGV~Iv 183 (184)
--+.||+++||.||..+=..-. .. ..+.+.|+++|++++
T Consensus 191 ~YA~AAl~~g~~fvN~tP~~~a--~~-P~l~ela~~~gvpi~ 229 (295)
T PF07994_consen 191 LYAYAALEAGVPFVNGTPSNIA--DD-PALVELAEEKGVPIA 229 (295)
T ss_dssp HHHHHHHHTTEEEEE-SSSTTT--TS-HHHHHHHHHHTEEEE
T ss_pred HHHHHHHHCCCCeEeccCcccc--CC-HHHHHHHHHcCCCee
Confidence 3467899999999987654433 22 367778899998875
No 292
>KOG0725|consensus
Probab=85.43 E-value=0.73 Score=40.12 Aligned_cols=82 Identities=16% Similarity=0.184 Sum_probs=54.6
Q ss_pred CccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccccC----------CCCCCEEEEeCCCHHHHH
Q psy1304 51 QPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYREN----------LIDIPIIIADLKNESSIL 120 (184)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~~----------~~~v~~v~vDv~D~~sL~ 120 (184)
..|.||+.-|-| -.||-.--|+..|++.. .++.+.+|+.+...+. .+++..+.||+.+++..+
T Consensus 4 ~~l~gkvalVTG---~s~GIG~aia~~la~~G----a~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~ 76 (270)
T KOG0725|consen 4 GRLAGKVALVTG---GSSGIGKAIALLLAKAG----AKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVE 76 (270)
T ss_pred ccCCCcEEEEEC---CCChHHHHHHHHHHHCC----CEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHH
Confidence 357788777766 23342233556666666 8899999977543211 145778999999887655
Q ss_pred HHh--------hcCcEEEecccccccc
Q psy1304 121 IMA--------KKCRVILNCVGPYTWY 139 (184)
Q Consensus 121 a~l--------~~~dVVIN~aGPf~~~ 139 (184)
+++ .+-|++||.+|.-...
T Consensus 77 ~l~~~~~~~~~GkidiLvnnag~~~~~ 103 (270)
T KOG0725|consen 77 KLVEFAVEKFFGKIDILVNNAGALGLT 103 (270)
T ss_pred HHHHHHHHHhCCCCCEEEEcCCcCCCC
Confidence 554 3589999999976544
No 293
>KOG1208|consensus
Probab=85.40 E-value=1.1 Score=40.17 Aligned_cols=88 Identities=18% Similarity=0.100 Sum_probs=60.9
Q ss_pred ccccccCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccccC---------CCCCCEEEEeCCC
Q psy1304 45 DRIGESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYREN---------LIDIPIIIADLKN 115 (184)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~~---------~~~v~~v~vDv~D 115 (184)
..+.....+.|++.-|-|--. |=| --+|..||... .++.+++|+.+.+++. ..++.++++|+.|
T Consensus 25 ~~~~~~~~~~~~~~vVTGans-GIG--~eta~~La~~G----a~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLss 97 (314)
T KOG1208|consen 25 LEVTHGIDLSGKVALVTGATS-GIG--FETARELALRG----AHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSS 97 (314)
T ss_pred ceeeccccCCCcEEEEECCCC-chH--HHHHHHHHhCC----CEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC
Confidence 334455677888888887433 222 22455555555 7899999876443321 2456679999999
Q ss_pred HHHHHHHhhc-------CcEEEecccccccc
Q psy1304 116 ESSILIMAKK-------CRVILNCVGPYTWY 139 (184)
Q Consensus 116 ~~sL~a~l~~-------~dVVIN~aGPf~~~ 139 (184)
.+++.++.+. -|+.||.||-+...
T Consensus 98 l~SV~~fa~~~~~~~~~ldvLInNAGV~~~~ 128 (314)
T KOG1208|consen 98 LKSVRKFAEEFKKKEGPLDVLINNAGVMAPP 128 (314)
T ss_pred HHHHHHHHHHHHhcCCCccEEEeCcccccCC
Confidence 9999998874 68999999977654
No 294
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=85.28 E-value=1 Score=37.34 Aligned_cols=32 Identities=22% Similarity=0.485 Sum_probs=23.3
Q ss_pred CCCEEEEeCCCHHHHH----HHh-------hcCcEEEeccccc
Q psy1304 105 DIPIIIADLKNESSIL----IMA-------KKCRVILNCVGPY 136 (184)
Q Consensus 105 ~v~~v~vDv~D~~sL~----a~l-------~~~dVVIN~aGPf 136 (184)
+..++.+|+.|++++. +++ .+.|+|||++|-+
T Consensus 53 ~~~~~~~Dv~d~~~~~~~~~~~~~~~~~~~g~iD~lv~nAG~~ 95 (267)
T TIGR02685 53 SAVTCQADLSNSATLFSRCEAIIDACFRAFGRCDVLVNNASAF 95 (267)
T ss_pred ceEEEEccCCCchhhHHHHHHHHHHHHHccCCceEEEECCccC
Confidence 3457889999987653 333 2589999999953
No 295
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=85.20 E-value=0.75 Score=37.09 Aligned_cols=58 Identities=5% Similarity=-0.101 Sum_probs=38.4
Q ss_pred hhhhhhhCCCCCceeEEeeeecccc-cc-------cCCCCCCEEEEeCCCHHHHHHHhhc-------CcEEEecccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCL-YR-------ENLIDIPIIIADLKNESSILIMAKK-------CRVILNCVGP 135 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~l-g~-------~~~~~v~~v~vDv~D~~sL~a~l~~-------~dVVIN~aGP 135 (184)
++..|++.. .++.+..+++.. .. ....++.++.+|+.|++++.++++. .|.+||++|-
T Consensus 14 ~a~~l~~~G----~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i~~li~~ag~ 86 (239)
T TIGR01831 14 IANRLAADG----FEICVHYHSGRSDAESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIAEHGAYYGVVLNAGI 86 (239)
T ss_pred HHHHHHHCC----CEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 556666543 456666554311 00 0124578999999999999888764 5899999984
No 296
>PRK07985 oxidoreductase; Provisional
Probab=85.17 E-value=1.3 Score=37.90 Aligned_cols=77 Identities=10% Similarity=0.033 Sum_probs=47.0
Q ss_pred ccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccc-c--------ccCCCCCCEEEEeCCCHHHHHHH
Q psy1304 52 PFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCL-Y--------RENLIDIPIIIADLKNESSILIM 122 (184)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~l-g--------~~~~~~v~~v~vDv~D~~sL~a~ 122 (184)
.++||+.-|-|- .+|----++..|++. + .++.+.+|++.. . .....++.++.+|+.|++++.++
T Consensus 46 ~~~~k~vlITGa---s~gIG~aia~~L~~~--G--~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 118 (294)
T PRK07985 46 RLKDRKALVTGG---DSGIGRAAAIAYARE--G--ADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSL 118 (294)
T ss_pred ccCCCEEEEECC---CCcHHHHHHHHHHHC--C--CEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHH
Confidence 477888777762 222111144555544 3 566666653211 0 00113466889999999998887
Q ss_pred hhc-------CcEEEecccc
Q psy1304 123 AKK-------CRVILNCVGP 135 (184)
Q Consensus 123 l~~-------~dVVIN~aGP 135 (184)
++. .|++||++|.
T Consensus 119 ~~~~~~~~g~id~lv~~Ag~ 138 (294)
T PRK07985 119 VHEAHKALGGLDIMALVAGK 138 (294)
T ss_pred HHHHHHHhCCCCEEEECCCC
Confidence 764 5999999984
No 297
>PRK06270 homoserine dehydrogenase; Provisional
Probab=85.16 E-value=3.7 Score=36.79 Aligned_cols=62 Identities=13% Similarity=0.061 Sum_probs=44.5
Q ss_pred HHHHhh--cCcEEEecccccccc---chHHHHHHHHcCCCEeeCCCChHHHHHHHHHhHHHHHHcCCee
Q psy1304 119 ILIMAK--KCRVILNCVGPYTWY---GEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVQK 182 (184)
Q Consensus 119 L~a~l~--~~dVVIN~aGPf~~~---g~~VaeACieAGthYVDltGE~~~~~~ii~~lhe~AkaaGV~I 182 (184)
+.+++. ..|+||.|.++.... +...++.|+++|.|-|=-+ .-+..... .++.+.|+++|+.+
T Consensus 81 ~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaN-K~pla~~~-~eL~~~A~~~g~~~ 147 (341)
T PRK06270 81 GLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSN-KGPLALAY-KELKELAKKNGVRF 147 (341)
T ss_pred HHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCC-cHHHHhhH-HHHHHHHHHcCCEE
Confidence 445553 589999999876543 3678899999999976432 23444444 68899999999865
No 298
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=84.45 E-value=1.6 Score=39.55 Aligned_cols=78 Identities=12% Similarity=0.026 Sum_probs=52.5
Q ss_pred ccccCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccccCCCCCCEEEEeCCCHHHHHHHhhcC
Q psy1304 47 IGESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRENLIDIPIIIADLKNESSILIMAKKC 126 (184)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~~~~~v~~v~vDv~D~~sL~a~l~~~ 126 (184)
|.+.++|.|.- +.+-|+++ |+ +.+.-..-++. .+..+ .+++++++
T Consensus 6 IvGasGy~G~e----------------l~rlL~~H-P~--~el~~l~s~~~-------------~~~~~---~~~~~~~~ 50 (310)
T TIGR01851 6 IDGEAGTTGLQ----------------IRERLSGR-DD--IELLSIAPDRR-------------KDAAE---RAKLLNAA 50 (310)
T ss_pred EECCCChhHHH----------------HHHHHhCC-CC--eEEEEEecccc-------------cCcCC---HhHhhcCC
Confidence 56788898887 67777766 66 55444321111 11112 34567899
Q ss_pred cEEEeccccccccchHHHHHHHHcCCCEeeCCCCh
Q psy1304 127 RVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEP 161 (184)
Q Consensus 127 dVVIN~aGPf~~~g~~VaeACieAGthYVDltGE~ 161 (184)
|+|+-|++ - ......+....++|+.-||++++.
T Consensus 51 D~vFlalp-~-~~s~~~~~~~~~~g~~VIDlSadf 83 (310)
T TIGR01851 51 DVAILCLP-D-DAAREAVSLVDNPNTCIIDASTAY 83 (310)
T ss_pred CEEEECCC-H-HHHHHHHHHHHhCCCEEEECChHH
Confidence 99999984 3 244677777888999999999864
No 299
>KOG1611|consensus
Probab=84.32 E-value=3.8 Score=36.28 Aligned_cols=96 Identities=17% Similarity=0.105 Sum_probs=60.6
Q ss_pred hhhhhhhCCCCCceeEEeeeecc-ccc-----c--cCCCCCCEEEEeCCCHHHHHHHhh---------cCcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARD-CLY-----R--ENLIDIPIIIADLKNESSILIMAK---------KCRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~-~lg-----~--~~~~~v~~v~vDv~D~~sL~a~l~---------~~dVVIN~aGPf 136 (184)
++..|. ..++ ..+-++++|+ ++. . ..++++.++++|+++.+++..+++ +.++.||++|-+
T Consensus 19 LVk~ll-k~~~--i~~iiat~r~~e~a~~~l~~k~~~d~rvHii~Ldvt~deS~~~~~~~V~~iVg~~GlnlLinNaGi~ 95 (249)
T KOG1611|consen 19 LVKELL-KDKG--IEVIIATARDPEKAATELALKSKSDSRVHIIQLDVTCDESIDNFVQEVEKIVGSDGLNLLINNAGIA 95 (249)
T ss_pred HHHHHh-cCCC--cEEEEEecCChHHhhHHHHHhhccCCceEEEEEecccHHHHHHHHHHHHhhcccCCceEEEecccee
Confidence 556666 4455 6666777663 221 1 134789999999999999998875 578999999988
Q ss_pred cccc------hHHHHHHHHcCCCEeeCCCChHHHHHHHHHhHHHHHHc
Q psy1304 137 TWYG------EAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQES 178 (184)
Q Consensus 137 ~~~g------~~VaeACieAGthYVDltGE~~~~~~ii~~lhe~Akaa 178 (184)
..|+ ..+.-.|.+..+- |-....+.+ .-+-.+|+.+
T Consensus 96 ~~y~~~~~~~r~~~~~~~~tN~v-----~~il~~Q~~-lPLLkkaas~ 137 (249)
T KOG1611|consen 96 LSYNTVLKPSRAVLLEQYETNAV-----GPILLTQAF-LPLLKKAASK 137 (249)
T ss_pred eecccccCCcHHHHHHHhhhcch-----hHHHHHHHH-HHHHHHHhhc
Confidence 7765 4445556555432 333333443 4444444443
No 300
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=83.94 E-value=2 Score=32.82 Aligned_cols=43 Identities=19% Similarity=0.338 Sum_probs=35.0
Q ss_pred CHHHHHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEeeCC
Q psy1304 115 NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDIT 158 (184)
Q Consensus 115 D~~sL~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDlt 158 (184)
+.+.+..+++++|+||+|...+. ....+.+.|.+.|..|++..
T Consensus 82 ~~~~~~~~~~~~d~vi~~~d~~~-~~~~l~~~~~~~~~p~i~~~ 124 (135)
T PF00899_consen 82 DEENIEELLKDYDIVIDCVDSLA-ARLLLNEICREYGIPFIDAG 124 (135)
T ss_dssp SHHHHHHHHHTSSEEEEESSSHH-HHHHHHHHHHHTT-EEEEEE
T ss_pred ccccccccccCCCEEEEecCCHH-HHHHHHHHHHHcCCCEEEEE
Confidence 56778899999999999998753 34678889999999999865
No 301
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.71 E-value=2.3 Score=38.50 Aligned_cols=80 Identities=14% Similarity=0.152 Sum_probs=47.5
Q ss_pred cCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeeccccc--cc--CCCCCCEEEEeCCCHHHHHHHhh-
Q psy1304 50 SQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLY--RE--NLIDIPIIIADLKNESSILIMAK- 124 (184)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg--~~--~~~~v~~v~vDv~D~~sL~a~l~- 124 (184)
+.+++|++.-|-|- .++--..++.+|++. + .++.+.+++.... .+ ..-...++.+|+.|+++++++++
T Consensus 205 ~~~~~g~~vlItGa---sggIG~~la~~l~~~--G--a~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~ 277 (450)
T PRK08261 205 DRPLAGKVALVTGA---ARGIGAAIAEVLARD--G--AHVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEH 277 (450)
T ss_pred ccCCCCCEEEEecC---CCHHHHHHHHHHHHC--C--CEEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHH
Confidence 34567888777661 122111244444443 3 5666665532110 00 00134688999999999988876
Q ss_pred ------cCcEEEeccccc
Q psy1304 125 ------KCRVILNCVGPY 136 (184)
Q Consensus 125 ------~~dVVIN~aGPf 136 (184)
+.|+|||++|..
T Consensus 278 ~~~~~g~id~vi~~AG~~ 295 (450)
T PRK08261 278 LAERHGGLDIVVHNAGIT 295 (450)
T ss_pred HHHhCCCCCEEEECCCcC
Confidence 479999999954
No 302
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=83.54 E-value=0.57 Score=41.18 Aligned_cols=111 Identities=11% Similarity=0.124 Sum_probs=61.6
Q ss_pred ccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccccCCCCCCEEEEeCCCHHHHHHHhhcCcEEEe
Q psy1304 52 PFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRENLIDIPIIIADLKNESSILIMAKKCRVILN 131 (184)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~~~~~v~~v~vDv~D~~sL~a~l~~~dVVIN 131 (184)
...|+++.|-|-=+-|+. ++..|.... .++.+..|+..... .........+ +.+++.+.++++|+|||
T Consensus 148 ~l~gk~v~IiG~G~iG~a----vA~~L~~~G----~~V~v~~R~~~~~~-~~~~~g~~~~---~~~~l~~~l~~aDiVin 215 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMT----IARTFSALG----ARVFVGARSSADLA-RITEMGLIPF---PLNKLEEKVAEIDIVIN 215 (287)
T ss_pred CCCCCEEEEEcChHHHHH----HHHHHHHCC----CEEEEEeCCHHHHH-HHHHCCCeee---cHHHHHHHhccCCEEEE
Confidence 346888888774333333 344443332 46777766553211 0000111111 24567889999999999
Q ss_pred ccccccccchHHHHHHHHcCCCEeeCCCChHHHHHHHHHhHHHHHHcCCee
Q psy1304 132 CVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVQK 182 (184)
Q Consensus 132 ~aGPf~~~g~~VaeACieAGthYVDltGE~~~~~~ii~~lhe~AkaaGV~I 182 (184)
|+ |........++ .+..++-.+|++-.+.-+ .| +.|++.|+..
T Consensus 216 t~-P~~ii~~~~l~-~~k~~aliIDlas~Pg~t-----df-~~Ak~~G~~a 258 (287)
T TIGR02853 216 TI-PALVLTADVLS-KLPKHAVIIDLASKPGGT-----DF-EYAKKRGIKA 258 (287)
T ss_pred CC-ChHHhCHHHHh-cCCCCeEEEEeCcCCCCC-----CH-HHHHHCCCEE
Confidence 98 55444444433 346678899998654221 23 3567777554
No 303
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=83.25 E-value=2.7 Score=32.21 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=34.5
Q ss_pred HHHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEeeCCCC
Q psy1304 118 SILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGE 160 (184)
Q Consensus 118 sL~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltGE 160 (184)
.....++++|+||.|...+ ..-..+.++|.+.|++|+|....
T Consensus 82 ~~~~~~~~~diVi~~~d~~-~~~~~l~~~~~~~~i~~i~~~~~ 123 (143)
T cd01483 82 NLDDFLDGVDLVIDAIDNI-AVRRALNRACKELGIPVIDAGGL 123 (143)
T ss_pred hHHHHhcCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEcCC
Confidence 3477889999999999875 33577899999999999997654
No 304
>PRK12747 short chain dehydrogenase; Provisional
Probab=83.06 E-value=1.5 Score=35.82 Aligned_cols=31 Identities=19% Similarity=0.204 Sum_probs=24.6
Q ss_pred CCCEEEEeCCCHHHHHHHhh-------------cCcEEEecccc
Q psy1304 105 DIPIIIADLKNESSILIMAK-------------KCRVILNCVGP 135 (184)
Q Consensus 105 ~v~~v~vDv~D~~sL~a~l~-------------~~dVVIN~aGP 135 (184)
....+.+|+.|.+++..+++ +.|++||++|.
T Consensus 55 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~g~~~id~lv~~Ag~ 98 (252)
T PRK12747 55 SAFSIGANLESLHGVEALYSSLDNELQNRTGSTKFDILINNAGI 98 (252)
T ss_pred ceEEEecccCCHHHHHHHHHHHHHHhhhhcCCCCCCEEEECCCc
Confidence 45678899999888776553 58999999994
No 305
>PRK10206 putative oxidoreductase; Provisional
Probab=82.87 E-value=3.8 Score=36.52 Aligned_cols=60 Identities=13% Similarity=0.119 Sum_probs=43.3
Q ss_pred HHHHHhh--cCcEEEeccccccccchHHHHHHHHcCCC-Eee--CCCChHHHHHHHHHhHHHHHHcCCeee
Q psy1304 118 SILIMAK--KCRVILNCVGPYTWYGEAVVKACIEAKTH-HVD--ITGEPYFMEYMQYEYNTRAQESEVQKC 183 (184)
Q Consensus 118 sL~a~l~--~~dVVIN~aGPf~~~g~~VaeACieAGth-YVD--ltGE~~~~~~ii~~lhe~AkaaGV~Iv 183 (184)
+++++++ +.|+|+.|..|... ..++.+|+++|.| +++ ++-+. .+. +++-+.|+++|+.++
T Consensus 55 ~~~ell~~~~iD~V~I~tp~~~H--~~~~~~al~aGkhVl~EKPla~~~---~ea-~~l~~~a~~~~~~l~ 119 (344)
T PRK10206 55 DLDEVLNDPDVKLVVVCTHADSH--FEYAKRALEAGKNVLVEKPFTPTL---AEA-KELFALAKSKGLTVT 119 (344)
T ss_pred CHHHHhcCCCCCEEEEeCCchHH--HHHHHHHHHcCCcEEEecCCcCCH---HHH-HHHHHHHHHhCCEEE
Confidence 4677775 58999999866655 5899999999999 665 33332 343 566778888888764
No 306
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.72 E-value=1.3 Score=39.78 Aligned_cols=80 Identities=13% Similarity=0.208 Sum_probs=51.9
Q ss_pred CchhhhhhhCC----CCCceeEEeeeecccccccCC-----CCCCEEEEeCCCHHHHHHHhhcCcEEEeccccccccchH
Q psy1304 72 PRPSAYKADAP----TSNLTRLGLLGARDCLYRENL-----IDIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYGEA 142 (184)
Q Consensus 72 ~r~~~~La~~~----~~~~~~iaLAGrr~~lg~~~~-----~~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~g~~ 142 (184)
|+.+-.|.+.+ .+ .++++.||+...|.+.+ .+.....++-.. .+++++++++|+||.|+|=-.
T Consensus 142 p~ai~~ll~~~~i~~~G--k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT-~~l~e~~~~ADIVIsavg~~~----- 213 (296)
T PRK14188 142 PLGCMMLLRRVHGDLSG--LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRT-RDLPAVCRRADILVAAVGRPE----- 213 (296)
T ss_pred HHHHHHHHHHhCCCCCC--CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCC-CCHHHHHhcCCEEEEecCChh-----
Confidence 45555555443 34 79999999887776543 456666675333 257889999999999997322
Q ss_pred HHHH-HHHcCCCEeeCCC
Q psy1304 143 VVKA-CIEAKTHHVDITG 159 (184)
Q Consensus 143 VaeA-CieAGthYVDltG 159 (184)
.+++ -+..|++.||++-
T Consensus 214 ~v~~~~lk~GavVIDvGi 231 (296)
T PRK14188 214 MVKGDWIKPGATVIDVGI 231 (296)
T ss_pred hcchheecCCCEEEEcCC
Confidence 2222 2666777766643
No 307
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=82.42 E-value=0.44 Score=41.20 Aligned_cols=115 Identities=11% Similarity=0.040 Sum_probs=58.3
Q ss_pred ccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccccCC---CCCCEEEEeCCCHHHHHHHhhcCcE
Q psy1304 52 PFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRENL---IDIPIIIADLKNESSILIMAKKCRV 128 (184)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~~~---~~v~~v~vDv~D~~sL~a~l~~~dV 128 (184)
.++||+..|-|-=.-||. ++.+|+.... .+|.+..|+.+...+.. .....+.++. ++...+.++|+
T Consensus 120 ~~~~k~vlVlGaGg~a~a----i~~aL~~~g~---~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~----~~~~~~~~~Di 188 (278)
T PRK00258 120 DLKGKRILILGAGGAARA----VILPLLDLGV---AEITIVNRTVERAEELAKLFGALGKAELDL----ELQEELADFDL 188 (278)
T ss_pred CCCCCEEEEEcCcHHHHH----HHHHHHHcCC---CEEEEEeCCHHHHHHHHHHhhhccceeecc----cchhccccCCE
Confidence 356666666663222233 5555554432 36888888654322111 1111011111 23466788999
Q ss_pred EEeccccccccc----hHHHHHHHHcCCCEeeCCCChHHHHHHHHHhHHHHHHcCCeee
Q psy1304 129 ILNCVGPYTWYG----EAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVQKC 183 (184)
Q Consensus 129 VIN~aGPf~~~g----~~VaeACieAGthYVDltGE~~~~~~ii~~lhe~AkaaGV~Iv 183 (184)
||||.. -...+ .++...++..+...+|+.=.+.- ..|-+.|+++|+.++
T Consensus 189 vInaTp-~g~~~~~~~~~~~~~~l~~~~~v~DivY~P~~-----T~ll~~A~~~G~~~~ 241 (278)
T PRK00258 189 IINATS-AGMSGELPLPPLPLSLLRPGTIVYDMIYGPLP-----TPFLAWAKAQGARTI 241 (278)
T ss_pred EEECCc-CCCCCCCCCCCCCHHHcCCCCEEEEeecCCCC-----CHHHHHHHHCcCeec
Confidence 999983 32211 24444566667777777432221 234445666666543
No 308
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=81.07 E-value=1 Score=40.43 Aligned_cols=82 Identities=15% Similarity=0.121 Sum_probs=49.7
Q ss_pred hhhhhhhCCCCCceeEEeeeecc--------cccc-cCCCCCC----EEEEeCCCHHHHHHHhh--cCcEEEeccccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARD--------CLYR-ENLIDIP----IIIADLKNESSILIMAK--KCRVILNCVGPYTW 138 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~--------~lg~-~~~~~v~----~v~vDv~D~~sL~a~l~--~~dVVIN~aGPf~~ 138 (184)
++.+|++..|. +|-+-++++ ++.. ....+++ ++..|+.|.+.|..+++ ++|+|+|+|- |-+
T Consensus 14 L~rql~~~~p~---~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiVfHaAA-~Kh 89 (293)
T PF02719_consen 14 LVRQLLRYGPK---KLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDIVFHAAA-LKH 89 (293)
T ss_dssp HHHHHHCCB-S---EEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SEEEE-------
T ss_pred HHHHHHhcCCC---eEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCEEEEChh-cCC
Confidence 56777777665 666777654 2210 0113343 34779999999999999 8999999995 322
Q ss_pred cc-----------------hHHHHHHHHcCCC-EeeCCC
Q psy1304 139 YG-----------------EAVVKACIEAKTH-HVDITG 159 (184)
Q Consensus 139 ~g-----------------~~VaeACieAGth-YVDltG 159 (184)
-. .+++++|++.|+. +|-++=
T Consensus 90 Vpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~IST 128 (293)
T PF02719_consen 90 VPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFIST 128 (293)
T ss_dssp HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEE
T ss_pred CChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccc
Confidence 11 7899999999998 666653
No 309
>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila. A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.
Probab=80.68 E-value=1.8 Score=36.18 Aligned_cols=85 Identities=15% Similarity=0.259 Sum_probs=50.5
Q ss_pred cccCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeeccc-------c----cc-----c----CCCCCC
Q psy1304 48 GESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDC-------L----YR-----E----NLIDIP 107 (184)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~-------l----g~-----~----~~~~v~ 107 (184)
-+.++|=|.- +...|.+.+++ .+|-.--|... + .. . ...++.
T Consensus 2 TGaTGflG~~----------------ll~~Ll~~~~~--~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~ 63 (249)
T PF07993_consen 2 TGATGFLGSH----------------LLEELLRQPPD--VKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIE 63 (249)
T ss_dssp E-TTSHHHHH----------------HHHHHHHHS-T--TEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEE
T ss_pred cCCCcHHHHH----------------HHHHHHcCCCC--cEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEE
Confidence 3567787777 67778877776 46666655321 1 00 0 147889
Q ss_pred EEEEeCCCH------HHHHHHhhcCcEEEeccccccccc-------------hHHHHHHHHc
Q psy1304 108 IIIADLKNE------SSILIMAKKCRVILNCVGPYTWYG-------------EAVVKACIEA 150 (184)
Q Consensus 108 ~v~vDv~D~------~sL~a~l~~~dVVIN~aGPf~~~g-------------~~VaeACieA 150 (184)
++..|+.++ +....+.+++|+||||++...... ..+++.|.+.
T Consensus 64 ~v~GDl~~~~lGL~~~~~~~L~~~v~~IiH~Aa~v~~~~~~~~~~~~NV~gt~~ll~la~~~ 125 (249)
T PF07993_consen 64 VVEGDLSQPNLGLSDEDYQELAEEVDVIIHCAASVNFNAPYSELRAVNVDGTRNLLRLAAQG 125 (249)
T ss_dssp EEE--TTSGGGG--HHHHHHHHHH--EEEE--SS-SBS-S--EEHHHHHHHHHHHHHHHTSS
T ss_pred EEeccccccccCCChHHhhccccccceeeecchhhhhcccchhhhhhHHHHHHHHHHHHHhc
Confidence 999999874 578888899999999998765442 6788888843
No 310
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=80.38 E-value=0.11 Score=40.32 Aligned_cols=94 Identities=10% Similarity=0.080 Sum_probs=55.4
Q ss_pred ccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccccCC---CCCCEEEEeCCCHHHHHHHhhcCcE
Q psy1304 52 PFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRENL---IDIPIIIADLKNESSILIMAKKCRV 128 (184)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~~~---~~v~~v~vDv~D~~sL~a~l~~~dV 128 (184)
.++|++.-|-|-=.-+|. ++.+|+..... +|.+.+|+.+...+.. ....+..++.++ +.+.+.++|+
T Consensus 9 ~l~~~~vlviGaGg~ar~----v~~~L~~~g~~---~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~---~~~~~~~~Di 78 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARA----VAAALAALGAK---EITIVNRTPERAEALAEEFGGVNIEAIPLED---LEEALQEADI 78 (135)
T ss_dssp TGTTSEEEEESSSHHHHH----HHHHHHHTTSS---EEEEEESSHHHHHHHHHHHTGCSEEEEEGGG---HCHHHHTESE
T ss_pred CcCCCEEEEECCHHHHHH----HHHHHHHcCCC---EEEEEECCHHHHHHHHHHcCccccceeeHHH---HHHHHhhCCe
Confidence 467788777774334444 67777766433 6999998765433211 334555666644 5578899999
Q ss_pred EEeccccccccchHHHHHHHHcC---C-CEeeCC
Q psy1304 129 ILNCVGPYTWYGEAVVKACIEAK---T-HHVDIT 158 (184)
Q Consensus 129 VIN~aGPf~~~g~~VaeACieAG---t-hYVDlt 158 (184)
||||.+--.. .+-+..++.+ . -.+|++
T Consensus 79 vI~aT~~~~~---~i~~~~~~~~~~~~~~v~Dla 109 (135)
T PF01488_consen 79 VINATPSGMP---IITEEMLKKASKKLRLVIDLA 109 (135)
T ss_dssp EEE-SSTTST---SSTHHHHTTTCHHCSEEEES-
T ss_pred EEEecCCCCc---ccCHHHHHHHHhhhhceeccc
Confidence 9999742211 2233334444 2 578884
No 311
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=80.06 E-value=5.8 Score=35.44 Aligned_cols=36 Identities=14% Similarity=0.139 Sum_probs=30.0
Q ss_pred hhcCcEEEeccccccccchHHHHHHHHcCCCEeeCCCC
Q psy1304 123 AKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGE 160 (184)
Q Consensus 123 l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltGE 160 (184)
+.++|+|+.|+++. ....++.++.++|++-||++|+
T Consensus 71 ~~~~DvVf~a~p~~--~s~~~~~~~~~~G~~VIDlsg~ 106 (341)
T TIGR00978 71 SKDVDIVFSALPSE--VAEEVEPKLAEAGKPVFSNASN 106 (341)
T ss_pred hccCCEEEEeCCHH--HHHHHHHHHHHCCCEEEECChh
Confidence 47899999999644 3457778999999999999987
No 312
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=80.05 E-value=0.43 Score=41.76 Aligned_cols=55 Identities=9% Similarity=0.021 Sum_probs=29.3
Q ss_pred hhhhhhhCCCCCceeEEeeeecccccccCC----CCCC-EEEEeCCCHHHHHHHhhcCcEEEec--cc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRENL----IDIP-IIIADLKNESSILIMAKKCRVILNC--VG 134 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~~~----~~v~-~v~vDv~D~~sL~a~l~~~dVVIN~--aG 134 (184)
++.+|+.... .+|.+..|+.++.+... .... ...... +++.+.++++|+|||| +|
T Consensus 142 ia~aL~~~G~---~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~---~~~~~~~~~aDiVInaTp~G 203 (284)
T PRK12549 142 VAHALLTLGV---ERLTIFDVDPARAAALADELNARFPAARATAG---SDLAAALAAADGLVHATPTG 203 (284)
T ss_pred HHHHHHHcCC---CEEEEECCCHHHHHHHHHHHHhhCCCeEEEec---cchHhhhCCCCEEEECCcCC
Confidence 4455555442 26888887654332111 1111 122222 2345677899999999 55
No 313
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.85 E-value=0.8 Score=40.92 Aligned_cols=92 Identities=14% Similarity=0.240 Sum_probs=61.2
Q ss_pred CCCchhhhhhhCC----CCCceeEEeeeecccccccCC-----CCCCEEEEeCCCHHHHHHHhhcCcEEEeccccccccc
Q psy1304 70 SNPRPSAYKADAP----TSNLTRLGLLGARDCLYRENL-----IDIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYG 140 (184)
Q Consensus 70 ~~~r~~~~La~~~----~~~~~~iaLAGrr~~lg~~~~-----~~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~g 140 (184)
--|+.+-.|.+.+ .+ .++++.||+..-|.+.. .+.....|.... ..|.+.++++|+||.++|--....
T Consensus 139 cTp~avi~lL~~y~i~l~G--k~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T-~nl~~~~~~ADIvIsAvGkp~~i~ 215 (282)
T PRK14166 139 CTPLGVMKLLKAYEIDLEG--KDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT-KDLSLYTRQADLIIVAAGCVNLLR 215 (282)
T ss_pred CCHHHHHHHHHHhCCCCCC--CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC-CCHHHHHhhCCEEEEcCCCcCccC
Confidence 3456666666543 34 79999999987776422 344455565543 358999999999999999554444
Q ss_pred hHHHH---HHHHcCCCEee---CCCChHHH
Q psy1304 141 EAVVK---ACIEAKTHHVD---ITGEPYFM 164 (184)
Q Consensus 141 ~~Vae---ACieAGthYVD---ltGE~~~~ 164 (184)
...++ .+++.|++|++ ++||.+|-
T Consensus 216 ~~~vk~GavVIDvGin~~~~gkl~GDVd~~ 245 (282)
T PRK14166 216 SDMVKEGVIVVDVGINRLESGKIVGDVDFE 245 (282)
T ss_pred HHHcCCCCEEEEecccccCCCCeeCCCCHH
Confidence 33333 36778888762 67777653
No 314
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=79.76 E-value=2.7 Score=37.86 Aligned_cols=40 Identities=13% Similarity=0.033 Sum_probs=34.0
Q ss_pred HHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEeeCCCC
Q psy1304 119 ILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGE 160 (184)
Q Consensus 119 L~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltGE 160 (184)
++.++.++|+|+.|.||+.. ...++.|+++|+.-||-+++
T Consensus 72 ~~el~~~vDVVIdaT~~~~~--~e~a~~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 72 IEDLLEKADIVVDATPGGVG--AKNKELYEKAGVKAIFQGGE 111 (341)
T ss_pred hhHhhccCCEEEECCCchhh--HHHHHHHHHCCCEEEEcCCC
Confidence 45566789999999998854 57889999999999999985
No 315
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=79.20 E-value=3.6 Score=34.52 Aligned_cols=42 Identities=12% Similarity=0.249 Sum_probs=34.7
Q ss_pred CHHHHHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEeeC
Q psy1304 115 NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDI 157 (184)
Q Consensus 115 D~~sL~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDl 157 (184)
+.+.+.++++++|+||+|+..+. .-.-+-++|.+.++.+++.
T Consensus 101 ~~~~~~~~~~~~DvVi~~~d~~~-~r~~l~~~~~~~~ip~i~~ 142 (228)
T cd00757 101 DAENAEELIAGYDLVLDCTDNFA-TRYLINDACVKLGKPLVSG 142 (228)
T ss_pred CHHHHHHHHhCCCEEEEcCCCHH-HHHHHHHHHHHcCCCEEEE
Confidence 35677889999999999998663 3467888999999999885
No 316
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=79.03 E-value=4.2 Score=35.37 Aligned_cols=52 Identities=12% Similarity=0.303 Sum_probs=42.4
Q ss_pred CCEEEEeCCCHHHHHHHhh--cCcEEEecccccccc-chHHHHHHHHcCCCEeeC
Q psy1304 106 IPIIIADLKNESSILIMAK--KCRVILNCVGPYTWY-GEAVVKACIEAKTHHVDI 157 (184)
Q Consensus 106 v~~v~vDv~D~~sL~a~l~--~~dVVIN~aGPf~~~-g~~VaeACieAGthYVDl 157 (184)
.+.+.--..|.+.+.++++ +.++||++.=||... ..++.+||.+.|+.|+-+
T Consensus 45 ~~v~~G~lg~~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~ 99 (249)
T PF02571_consen 45 LEVRVGRLGDEEGLAEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRF 99 (249)
T ss_pred ceEEECCCCCHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEE
Confidence 4444444449999999996 689999999999754 589999999999999754
No 317
>KOG1014|consensus
Probab=78.25 E-value=2.8 Score=38.26 Aligned_cols=82 Identities=15% Similarity=0.098 Sum_probs=58.1
Q ss_pred hccccccccCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeeccccccc--------CCCCCCEEEEeC
Q psy1304 42 RKEDRIGESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRE--------NLIDIPIIIADL 113 (184)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~--------~~~~v~~v~vDv 113 (184)
.+.-+|-+.++==||- .+..|||.. +++.|-+|++++-.. ....+.++.+|.
T Consensus 49 g~WAVVTGaTDGIGKa----------------yA~eLAkrG----~nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Df 108 (312)
T KOG1014|consen 49 GSWAVVTGATDGIGKA----------------YARELAKRG----FNVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDF 108 (312)
T ss_pred CCEEEEECCCCcchHH----------------HHHHHHHcC----CEEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEec
Confidence 3777786666656665 788899854 899999998754321 114577899998
Q ss_pred CCHH----HHHHHhhcCc--EEEeccccccccchHH
Q psy1304 114 KNES----SILIMAKKCR--VILNCVGPYTWYGEAV 143 (184)
Q Consensus 114 ~D~~----sL~a~l~~~d--VVIN~aGPf~~~g~~V 143 (184)
.++. .+...+.+.| ++||+||-++.+-+..
T Consensus 109 t~~~~~ye~i~~~l~~~~VgILVNNvG~~~~~P~~f 144 (312)
T KOG1014|consen 109 TKGDEVYEKLLEKLAGLDVGILVNNVGMSYDYPESF 144 (312)
T ss_pred CCCchhHHHHHHHhcCCceEEEEecccccCCCcHHH
Confidence 7655 4777777765 7999999887654333
No 318
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=77.60 E-value=7.8 Score=34.76 Aligned_cols=89 Identities=9% Similarity=-0.033 Sum_probs=54.4
Q ss_pred ccccCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeee-cccccccCC---CC---------CCEEEEeC
Q psy1304 47 IGESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGA-RDCLYRENL---ID---------IPIIIADL 113 (184)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGr-r~~lg~~~~---~~---------v~~v~vDv 113 (184)
|.+.++|.|+. ++..|.. .|+ .+|....+ ++..|.... +. +.-..+..
T Consensus 8 I~GatG~iG~~----------------l~~~L~~-~p~--~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~ 68 (349)
T PRK08664 8 ILGATGMVGQR----------------FVQLLAN-HPW--FEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVS 68 (349)
T ss_pred EECCCCHHHHH----------------HHHHHHc-CCC--ceEEEEEcChhhcCCcccccccccccccccccccceEEEe
Confidence 46677888887 6677775 455 56655522 222322110 00 11123333
Q ss_pred CCHHHHHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEeeCCCC
Q psy1304 114 KNESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGE 160 (184)
Q Consensus 114 ~D~~sL~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltGE 160 (184)
.|++. +.++|+|+-|++. .....+++++.++|+.-||++++
T Consensus 69 ~~~~~----~~~~DvVf~a~p~--~~s~~~~~~~~~~G~~vIDls~~ 109 (349)
T PRK08664 69 TDPEA----VDDVDIVFSALPS--DVAGEVEEEFAKAGKPVFSNASA 109 (349)
T ss_pred CCHHH----hcCCCEEEEeCCh--hHHHHHHHHHHHCCCEEEECCch
Confidence 45443 3689999998754 33467778889999999999985
No 319
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.11 E-value=1.4 Score=39.44 Aligned_cols=90 Identities=12% Similarity=0.212 Sum_probs=58.4
Q ss_pred CCchhhhhhhCC----CCCceeEEeeeecccccccCC-----CCCCEEEEeCCCHHHHHHHhhcCcEEEeccccccccch
Q psy1304 71 NPRPSAYKADAP----TSNLTRLGLLGARDCLYRENL-----IDIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYGE 141 (184)
Q Consensus 71 ~~r~~~~La~~~----~~~~~~iaLAGrr~~lg~~~~-----~~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~g~ 141 (184)
-|+.+-.|.+.+ .+ .++++-||+..-|.+.. .+.....|+... ..|.+.++++|+||.++|--.....
T Consensus 141 Tp~av~~lL~~~~i~l~G--k~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t-~~l~~~~~~ADIvI~AvG~p~~i~~ 217 (284)
T PRK14190 141 TPHGILELLKEYNIDISG--KHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT-KNLAELTKQADILIVAVGKPKLITA 217 (284)
T ss_pred CHHHHHHHHHHcCCCCCC--CEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc-hhHHHHHHhCCEEEEecCCCCcCCH
Confidence 445555555443 45 79999999987776422 344555666543 5689999999999999985444433
Q ss_pred HHHH---HHHHcCCCEee---CCCChHH
Q psy1304 142 AVVK---ACIEAKTHHVD---ITGEPYF 163 (184)
Q Consensus 142 ~Vae---ACieAGthYVD---ltGE~~~ 163 (184)
..++ .+++.|++|++ ++||.+|
T Consensus 218 ~~ik~gavVIDvGi~~~~~gkl~GDvd~ 245 (284)
T PRK14190 218 DMVKEGAVVIDVGVNRLENGKLCGDVDF 245 (284)
T ss_pred HHcCCCCEEEEeeccccCCCCeeccCcH
Confidence 3332 25666777763 6677765
No 320
>PRK08374 homoserine dehydrogenase; Provisional
Probab=77.05 E-value=7.9 Score=34.82 Aligned_cols=60 Identities=7% Similarity=-0.059 Sum_probs=41.9
Q ss_pred HHHHh--hcCcEEEeccccccccchHHHHHHHHcCCCEeeCCCCh-HHHHHHHHHhHHHHHHcCCeee
Q psy1304 119 ILIMA--KKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEP-YFMEYMQYEYNTRAQESEVQKC 183 (184)
Q Consensus 119 L~a~l--~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltGE~-~~~~~ii~~lhe~AkaaGV~Iv 183 (184)
+.+++ ..+|+||+|.++- ....+.+.|++.|.|.|=. +. ...... .++.+.|+++|+.+.
T Consensus 83 ~~ell~~~~~DVvVd~t~~~--~a~~~~~~al~~G~~VVta--nK~~la~~~-~el~~la~~~~~~~~ 145 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTNDK--NAHEWHLEALKEGKSVVTS--NKPPIAFHY-DELLDLANERNLPYL 145 (336)
T ss_pred HHHHHhcCCCCEEEECCCcH--HHHHHHHHHHhhCCcEEEC--CHHHHHhCH-HHHHHHHHHcCCeEE
Confidence 34455 3699999999753 4578899999999998743 32 222232 577888888887664
No 321
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=76.56 E-value=8.6 Score=35.25 Aligned_cols=94 Identities=15% Similarity=0.120 Sum_probs=56.6
Q ss_pred cccccCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccccC-CCCCCEEEEeCCCHHHHHHHhh
Q psy1304 46 RIGESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYREN-LIDIPIIIADLKNESSILIMAK 124 (184)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~~-~~~v~~v~vDv~D~~sL~a~l~ 124 (184)
.|.+.+++.|+. +..-|++++.=...++.+..-.+..|..- ...-+...-++ |+++ ++
T Consensus 9 aIvGATG~vG~e----------------ll~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~-~~~~----~~ 67 (347)
T PRK06728 9 AVVGATGAVGQK----------------IIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEA-KINS----FE 67 (347)
T ss_pred EEEeCCCHHHHH----------------HHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeC-CHHH----hc
Confidence 368889999998 66777733221112344443333222211 11123333333 4433 36
Q ss_pred cCcEEEeccccccccchHHHHHHHHcCCCEeeCCCChH
Q psy1304 125 KCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPY 162 (184)
Q Consensus 125 ~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltGE~~ 162 (184)
++|+|+.|+|.- ....++..+.++|+.-||++++..
T Consensus 68 ~~Divf~a~~~~--~s~~~~~~~~~~G~~VID~Ss~fR 103 (347)
T PRK06728 68 GVDIAFFSAGGE--VSRQFVNQAVSSGAIVIDNTSEYR 103 (347)
T ss_pred CCCEEEECCChH--HHHHHHHHHHHCCCEEEECchhhc
Confidence 899999998533 457888888999999999998653
No 322
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=76.31 E-value=3.1 Score=36.30 Aligned_cols=56 Identities=16% Similarity=0.046 Sum_probs=30.9
Q ss_pred hhhhhhhCCCCCceeEEeeeecccccccCCCC----CCEEEEeCCCHHHHHHHhhcCcEEEeccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRENLID----IPIIIADLKNESSILIMAKKCRVILNCVG 134 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~~~~~----v~~v~vDv~D~~sL~a~l~~~dVVIN~aG 134 (184)
++.+|+.... -+|.+..|+.++.++.... ..+.. +...+++...+.++|+||||..
T Consensus 140 i~~aL~~~G~---~~i~I~nRt~~ka~~La~~~~~~~~~~~--~~~~~~~~~~~~~~DiVInaTp 199 (282)
T TIGR01809 140 AVYALASLGV---TDITVINRNPDKLSRLVDLGVQVGVITR--LEGDSGGLAIEKAAEVLVSTVP 199 (282)
T ss_pred HHHHHHHcCC---CeEEEEeCCHHHHHHHHHHhhhcCccee--ccchhhhhhcccCCCEEEECCC
Confidence 4455665543 3688888876544321111 11111 2222445566788999999974
No 323
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=76.06 E-value=2.8 Score=33.46 Aligned_cols=70 Identities=9% Similarity=0.036 Sum_probs=48.4
Q ss_pred eeEEeeeecccccccCC-----CCCCEEEEeCCCHHHHHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEeeCCCCh
Q psy1304 87 TRLGLLGARDCLYRENL-----IDIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEP 161 (184)
Q Consensus 87 ~~iaLAGrr~~lg~~~~-----~~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltGE~ 161 (184)
.++.+-||+...|.+.. .+.....|+.+. .++++.++++|+||.++|--. -+-..-++.|+|-+|+.=+.
T Consensus 29 k~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t-~~l~~~v~~ADIVvsAtg~~~----~i~~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT-IQLQSKVHDADVVVVGSPKPE----KVPTEWIKPGATVINCSPTK 103 (140)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC-cCHHHHHhhCCEEEEecCCCC----ccCHHHcCCCCEEEEcCCCc
Confidence 67888888776655322 446666776543 458889999999999998332 13345688999999886443
No 324
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=75.56 E-value=3.5 Score=34.97 Aligned_cols=54 Identities=7% Similarity=0.044 Sum_probs=34.1
Q ss_pred hhhhhhhCCCCCceeEEeeeecccccccCCCCCCEEEEeCCCHHHHHHHhh-------cCcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRENLIDIPIIIADLKNESSILIMAK-------KCRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~~~~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGPf 136 (184)
++.+|++.. .++.+.++...+.. .....+|+.|.+++.++++ +.|++||+||..
T Consensus 31 IA~~la~~G----a~Vvlv~~~~~l~~-----~~~~~~Dv~d~~s~~~l~~~v~~~~g~iDiLVnnAgv~ 91 (227)
T TIGR02114 31 ITETFLSAG----HEVTLVTTKRALKP-----EPHPNLSIREIETTKDLLITLKELVQEHDILIHSMAVS 91 (227)
T ss_pred HHHHHHHCC----CEEEEEcChhhccc-----ccCCcceeecHHHHHHHHHHHHHHcCCCCEEEECCEec
Confidence 555666544 56676655332211 1124578888888887653 589999999954
No 325
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=75.40 E-value=4.8 Score=38.61 Aligned_cols=49 Identities=18% Similarity=0.178 Sum_probs=37.7
Q ss_pred EEEeCCCHHHHHHHhh--cCcEEEecccccc---c------------c----chHHHHHHHHcCCCEeeC
Q psy1304 109 IIADLKNESSILIMAK--KCRVILNCVGPYT---W------------Y----GEAVVKACIEAKTHHVDI 157 (184)
Q Consensus 109 v~vDv~D~~sL~a~l~--~~dVVIN~aGPf~---~------------~----g~~VaeACieAGthYVDl 157 (184)
...|+.|.+++...++ ++|+|||||+.-. . . -..++++|.+.|++.+-+
T Consensus 410 ~~~~l~d~~~v~~~i~~~~pd~Vih~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~~~v~~ 479 (668)
T PLN02260 410 GKGRLEDRSSLLADIRNVKPTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGLLMMNF 479 (668)
T ss_pred eccccccHHHHHHHHHhhCCCEEEECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCCeEEEE
Confidence 4567899999999887 6899999998431 0 1 167899999999876554
No 326
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=75.03 E-value=1.4 Score=37.83 Aligned_cols=56 Identities=11% Similarity=0.043 Sum_probs=35.0
Q ss_pred hhcCcEEEeccccccccc---hHHHHHHHHcCCCEeeCCCChHHHHHHHHHhHHHHHHcCCeee
Q psy1304 123 AKKCRVILNCVGPYTWYG---EAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVQKC 183 (184)
Q Consensus 123 l~~~dVVIN~aGPf~~~g---~~VaeACieAGthYVDltGE~~~~~~ii~~lhe~AkaaGV~Iv 183 (184)
..++|+||||.+.-.... .++....+..+...+|++=.+.-+ .+.++|+++|+.++
T Consensus 176 ~~~~DivInatp~gm~~~~~~~~~~~~~l~~~~~v~D~~y~p~~T-----~ll~~A~~~G~~~v 234 (270)
T TIGR00507 176 LHRVDLIINATSAGMSGNIDEPPVPAEKLKEGMVVYDMVYNPGET-----PFLAEAKSLGTKTI 234 (270)
T ss_pred ccCccEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEeccCCCCC-----HHHHHHHHCCCeee
Confidence 357999999985321111 133345667787888987654422 35667788887654
No 327
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=74.66 E-value=1.5 Score=39.43 Aligned_cols=91 Identities=12% Similarity=0.252 Sum_probs=59.3
Q ss_pred CCCchhhhhhhCC----CCCceeEEeeeecccccccCC-----CCCCEEEEeCCCHHHHHHHhhcCcEEEeccccccccc
Q psy1304 70 SNPRPSAYKADAP----TSNLTRLGLLGARDCLYRENL-----IDIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYG 140 (184)
Q Consensus 70 ~~~r~~~~La~~~----~~~~~~iaLAGrr~~lg~~~~-----~~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~g 140 (184)
.-|+.+-.|.+.+ .+ .++++-||+...|.+.. .+.....|.... ..|...++++|+||.++|--....
T Consensus 140 cTp~aii~lL~~~~i~l~G--k~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T-~~l~~~~~~ADIvIsAvGkp~~i~ 216 (297)
T PRK14186 140 CTPAGVMRLLRSQQIDIAG--KKAVVVGRSILVGKPLALMLLAANATVTIAHSRT-QDLASITREADILVAAAGRPNLIG 216 (297)
T ss_pred CCHHHHHHHHHHhCCCCCC--CEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC-CCHHHHHhhCCEEEEccCCcCccC
Confidence 3455555555443 34 79999999987776432 345555565443 458999999999999999443333
Q ss_pred hHHHH---HHHHcCCCEee-------CCCChHH
Q psy1304 141 EAVVK---ACIEAKTHHVD-------ITGEPYF 163 (184)
Q Consensus 141 ~~Vae---ACieAGthYVD-------ltGE~~~ 163 (184)
...++ .+++.|++|+| ++||.+|
T Consensus 217 ~~~ik~gavVIDvGin~~~~~~~~gkl~GDvd~ 249 (297)
T PRK14186 217 AEMVKPGAVVVDVGIHRLPSSDGKTRLCGDVDF 249 (297)
T ss_pred HHHcCCCCEEEEeccccccccccCCceeCCccH
Confidence 33332 36778888864 5677665
No 328
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=74.24 E-value=3.4 Score=38.93 Aligned_cols=96 Identities=13% Similarity=0.119 Sum_probs=63.4
Q ss_pred cccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccccCCCCCCEEEEeCCCHHHHHHHhhcCcEEEec
Q psy1304 53 FRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRENLIDIPIIIADLKNESSILIMAKKCRVILNC 132 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~~~~~v~~v~vDv~D~~sL~a~l~~~dVVIN~ 132 (184)
++|++.-|-|-=.-|+. .+.||+..+.. +|.++.|..+.....+.++. .++..-+++...+..+|+||+|
T Consensus 176 L~~~~vlvIGAGem~~l----va~~L~~~g~~---~i~IaNRT~erA~~La~~~~---~~~~~l~el~~~l~~~DvViss 245 (414)
T COG0373 176 LKDKKVLVIGAGEMGEL----VAKHLAEKGVK---KITIANRTLERAEELAKKLG---AEAVALEELLEALAEADVVISS 245 (414)
T ss_pred cccCeEEEEcccHHHHH----HHHHHHhCCCC---EEEEEcCCHHHHHHHHHHhC---CeeecHHHHHHhhhhCCEEEEe
Confidence 66777666653333333 67788766654 89999987766543334444 3344456789999999999999
Q ss_pred cc-cccccchHHHHHHHHcCCC--EeeCC
Q psy1304 133 VG-PYTWYGEAVVKACIEAKTH--HVDIT 158 (184)
Q Consensus 133 aG-Pf~~~g~~VaeACieAGth--YVDlt 158 (184)
.| |-......-++.+++.--+ .||++
T Consensus 246 Tsa~~~ii~~~~ve~a~~~r~~~livDia 274 (414)
T COG0373 246 TSAPHPIITREMVERALKIRKRLLIVDIA 274 (414)
T ss_pred cCCCccccCHHHHHHHHhcccCeEEEEec
Confidence 66 4445567777777776555 56665
No 329
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=74.10 E-value=6.4 Score=32.58 Aligned_cols=43 Identities=12% Similarity=0.336 Sum_probs=34.7
Q ss_pred CHHHHHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEeeCC
Q psy1304 115 NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDIT 158 (184)
Q Consensus 115 D~~sL~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDlt 158 (184)
+++.+.++++++|+||+|.+.+ ..-.-+-++|.+.++.+++..
T Consensus 101 ~~~~~~~~~~~~D~Vi~~~d~~-~~r~~l~~~~~~~~ip~i~~~ 143 (202)
T TIGR02356 101 TAENLELLINNVDLVLDCTDNF-ATRYLINDACVALGTPLISAA 143 (202)
T ss_pred CHHHHHHHHhCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEE
Confidence 3467888999999999999765 334668899999999998853
No 330
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=73.93 E-value=5.1 Score=35.62 Aligned_cols=60 Identities=12% Similarity=0.130 Sum_probs=41.7
Q ss_pred HHHHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEeeCC-C---ChHHHHHHHHHhHHHHHHcCCee
Q psy1304 117 SSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDIT-G---EPYFMEYMQYEYNTRAQESEVQK 182 (184)
Q Consensus 117 ~sL~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDlt-G---E~~~~~~ii~~lhe~AkaaGV~I 182 (184)
.+|++++++.|+||.||+|-.- ...+.-++++|+||+=++ | |+.+. ..+.+.|+..|..+
T Consensus 52 s~ide~~~~~DlvVEaAS~~Av--~e~~~~~L~~g~d~iV~SVGALad~~l~----erl~~lak~~~~rv 115 (255)
T COG1712 52 SDIDELIAEVDLVVEAASPEAV--REYVPKILKAGIDVIVMSVGALADEGLR----ERLRELAKCGGARV 115 (255)
T ss_pred ccHHHHhhccceeeeeCCHHHH--HHHhHHHHhcCCCEEEEechhccChHHH----HHHHHHHhcCCcEE
Confidence 3467778999999999986543 466777899999987655 2 44443 44566777766544
No 331
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=73.71 E-value=8.9 Score=35.29 Aligned_cols=50 Identities=6% Similarity=0.125 Sum_probs=41.2
Q ss_pred CCEEEEeCCCHHHHHHHhhc--CcEEEecccccc------------ccc----hHHHHHHHHcCCCEe
Q psy1304 106 IPIIIADLKNESSILIMAKK--CRVILNCVGPYT------------WYG----EAVVKACIEAKTHHV 155 (184)
Q Consensus 106 v~~v~vDv~D~~sL~a~l~~--~dVVIN~aGPf~------------~~g----~~VaeACieAGthYV 155 (184)
.++++.|+.|.+.|.++++. .|.||+.||--. ..+ ..++++|.++|+.-+
T Consensus 46 ~~f~~gDi~D~~~L~~vf~~~~idaViHFAa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~ 113 (329)
T COG1087 46 FKFYEGDLLDRALLTAVFEENKIDAVVHFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKF 113 (329)
T ss_pred CceEEeccccHHHHHHHHHhcCCCEEEECccccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEE
Confidence 68999999999999999985 899999998421 111 578999999999853
No 332
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=73.03 E-value=2.2 Score=38.24 Aligned_cols=93 Identities=9% Similarity=0.163 Sum_probs=56.9
Q ss_pred CCchhhhhhhCCC--CCceeEEeeeecccccccCC---------CCCCEEEEeCCCHHHHHHHhhcCcEEEecccccccc
Q psy1304 71 NPRPSAYKADAPT--SNLTRLGLLGARDCLYRENL---------IDIPIIIADLKNESSILIMAKKCRVILNCVGPYTWY 139 (184)
Q Consensus 71 ~~r~~~~La~~~~--~~~~~iaLAGrr~~lg~~~~---------~~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~ 139 (184)
-|+.+-.|.+.+. -.-.++++-||+..-|.+.. .+.....|+. +...|.+.++++|+||.++|--...
T Consensus 140 Tp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs-~t~~l~~~~~~ADIVI~AvG~p~li 218 (286)
T PRK14184 140 TPAGVMTLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHS-RTPDLAEECREADFLFVAIGRPRFV 218 (286)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeC-CchhHHHHHHhCCEEEEecCCCCcC
Confidence 3455555554332 11169999999887665421 1244555554 4467999999999999999854444
Q ss_pred chHHHH---HHHHcCCCEee--CCCChHHH
Q psy1304 140 GEAVVK---ACIEAKTHHVD--ITGEPYFM 164 (184)
Q Consensus 140 g~~Vae---ACieAGthYVD--ltGE~~~~ 164 (184)
....++ .+++.|++|++ ++||.+|-
T Consensus 219 ~~~~vk~GavVIDVGi~~~~~~l~GDVdf~ 248 (286)
T PRK14184 219 TADMVKPGAVVVDVGINRTDDGLVGDCDFE 248 (286)
T ss_pred CHHHcCCCCEEEEeeeeccCCCccCCccHH
Confidence 333332 24566666654 66777653
No 333
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=72.80 E-value=9 Score=30.24 Aligned_cols=15 Identities=27% Similarity=0.430 Sum_probs=7.0
Q ss_pred HHHHhhcCcEEEecc
Q psy1304 119 ILIMAKKCRVILNCV 133 (184)
Q Consensus 119 L~a~l~~~dVVIN~a 133 (184)
+.++++++|+|+.|+
T Consensus 51 ~~e~~~~~dvvi~~v 65 (163)
T PF03446_consen 51 PAEAAEQADVVILCV 65 (163)
T ss_dssp HHHHHHHBSEEEE-S
T ss_pred hhhHhhcccceEeec
Confidence 344445555555555
No 334
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=72.49 E-value=8.8 Score=33.81 Aligned_cols=58 Identities=14% Similarity=0.070 Sum_probs=30.4
Q ss_pred hhhhhhhCCCCCceeEEeeeeccc---ccccCCCC------CCEEEEeCCCHHHHHHHhhcCcEEEeccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDC---LYRENLID------IPIIIADLKNESSILIMAKKCRVILNCVG 134 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~---lg~~~~~~------v~~v~vDv~D~~sL~a~l~~~dVVIN~aG 134 (184)
++.+|+.... -+|.+..|+.+ +.+..... ......+..+.+.+...+.++|+||||..
T Consensus 139 i~~~l~~~g~---~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDivINaTp 205 (288)
T PRK12749 139 IGAQGAIEGL---KEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGTK 205 (288)
T ss_pred HHHHHHHCCC---CEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCEEEECCC
Confidence 3344655543 37888888732 21111111 11222333333346667788999999973
No 335
>PRK08223 hypothetical protein; Validated
Probab=72.22 E-value=8.1 Score=34.63 Aligned_cols=41 Identities=10% Similarity=0.077 Sum_probs=32.7
Q ss_pred HHHHHHHhhcCcEEEecccccc-ccchHHHHHHHHcCCCEee
Q psy1304 116 ESSILIMAKKCRVILNCVGPYT-WYGEAVVKACIEAKTHHVD 156 (184)
Q Consensus 116 ~~sL~a~l~~~dVVIN~aGPf~-~~g~~VaeACieAGthYVD 156 (184)
++.+.++++++|+||+|...|. ..-.-+-++|.+.|+.+|.
T Consensus 108 ~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~ 149 (287)
T PRK08223 108 KENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALT 149 (287)
T ss_pred ccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEE
Confidence 4557889999999999997652 3346788899999999876
No 336
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=72.18 E-value=12 Score=34.62 Aligned_cols=50 Identities=20% Similarity=0.193 Sum_probs=36.0
Q ss_pred CCEEEEeCCCHHHHHHHhhcCcEEEeccccccccchHHHHHHHHcCCC--EeeCCCCh
Q psy1304 106 IPIIIADLKNESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTH--HVDITGEP 161 (184)
Q Consensus 106 v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGth--YVDltGE~ 161 (184)
-...+.++.|++. ++++|+|+-|+|. .....++..+.++|+. .||.+++.
T Consensus 50 ~~~~v~~~~~~~~----~~~~Divf~a~~~--~~s~~~~~~~~~aG~~~~VID~Ss~f 101 (369)
T PRK06598 50 KEGTLQDAFDIDA----LKKLDIIITCQGG--DYTNEVYPKLRAAGWQGYWIDAASTL 101 (369)
T ss_pred CcceEEecCChhH----hcCCCEEEECCCH--HHHHHHHHHHHhCCCCeEEEECChHH
Confidence 3445566665444 3689999999963 3457888888899954 89999743
No 337
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=70.77 E-value=2.2 Score=39.29 Aligned_cols=91 Identities=11% Similarity=0.136 Sum_probs=57.9
Q ss_pred CCchhhhhhhCC----CCCceeEEeeeecccccccCC-----CCCCEEEEeCCCHHHHHHHhhcCcEEEeccccccccch
Q psy1304 71 NPRPSAYKADAP----TSNLTRLGLLGARDCLYRENL-----IDIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYGE 141 (184)
Q Consensus 71 ~~r~~~~La~~~----~~~~~~iaLAGrr~~lg~~~~-----~~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~g~ 141 (184)
-|+.+-.|.+.+ .+ .++++-||+..-|.+.. .+...-.|...- ..+.+.++++|+||.++|=-.....
T Consensus 197 Tp~avi~LL~~~~i~l~G--K~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T-~nl~~~~~~ADIvIsAvGkp~~v~~ 273 (345)
T PLN02897 197 TPKGCVELLIRSGVEIAG--KNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT-KDPEQITRKADIVIAAAGIPNLVRG 273 (345)
T ss_pred CHHHHHHHHHHhCCCCCC--CEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC-CCHHHHHhhCCEEEEccCCcCccCH
Confidence 344455555432 34 68999999987776432 334444555433 3488899999999999995444433
Q ss_pred HHHH---HHHHcCCCEee---------CCCChHHH
Q psy1304 142 AVVK---ACIEAKTHHVD---------ITGEPYFM 164 (184)
Q Consensus 142 ~Vae---ACieAGthYVD---------ltGE~~~~ 164 (184)
..++ .+++.|++++| ++||.+|-
T Consensus 274 d~vk~GavVIDVGin~~~~~~~~~g~klvGDVdfe 308 (345)
T PLN02897 274 SWLKPGAVVIDVGTTPVEDSSCEFGYRLVGDVCYE 308 (345)
T ss_pred HHcCCCCEEEEccccccccccccCCCeeEecccHH
Confidence 3333 36778888872 66777653
No 338
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=70.49 E-value=6.6 Score=35.45 Aligned_cols=79 Identities=14% Similarity=0.043 Sum_probs=52.7
Q ss_pred ccccCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccccCCCCCCEEEEeCCCHHHHHHHhhcC
Q psy1304 47 IGESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRENLIDIPIIIADLKNESSILIMAKKC 126 (184)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~~~~~v~~v~vDv~D~~sL~a~l~~~ 126 (184)
|.+.+++.|+. +.+-|+.+| . +++.-...+... ++.+ .+..++++
T Consensus 7 IvGAtGy~G~e----------------LlrlL~~hp-~--~~l~~~~s~~~~-------------~~~~---~~~~~~~~ 51 (313)
T PRK11863 7 IDGEAGTTGLQ----------------IRERLAGRS-D--IELLSIPEAKRK-------------DAAA---RRELLNAA 51 (313)
T ss_pred EECCCCHHHHH----------------HHHHHhcCC-C--eEEEEEecCCCC-------------cccC---chhhhcCC
Confidence 67788888887 667777664 5 555544332211 1111 13455789
Q ss_pred cEEEeccccccccchHHHHHHHHcCCCEeeCCCChH
Q psy1304 127 RVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPY 162 (184)
Q Consensus 127 dVVIN~aGPf~~~g~~VaeACieAGthYVDltGE~~ 162 (184)
|+|+-|+ |- .....++..+.+.|+.-||++++..
T Consensus 52 DvvFlal-p~-~~s~~~~~~~~~~g~~VIDlSadfR 85 (313)
T PRK11863 52 DVAILCL-PD-DAAREAVALIDNPATRVIDASTAHR 85 (313)
T ss_pred CEEEECC-CH-HHHHHHHHHHHhCCCEEEECChhhh
Confidence 9999998 43 3456778888899999999998653
No 339
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=70.36 E-value=2.1 Score=38.46 Aligned_cols=91 Identities=11% Similarity=0.161 Sum_probs=57.6
Q ss_pred CCchhhhhhhCC----CCCceeEEeeeecccccccCC-----CCCCEEEEeCCCHHHHHHHhhcCcEEEeccccccccch
Q psy1304 71 NPRPSAYKADAP----TSNLTRLGLLGARDCLYRENL-----IDIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYGE 141 (184)
Q Consensus 71 ~~r~~~~La~~~----~~~~~~iaLAGrr~~lg~~~~-----~~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~g~ 141 (184)
-|+.+-.|.+.+ .+ .++++-||+..-|.+.. .+.....|+... ..|.+.++++|+||.++|--.....
T Consensus 142 Tp~av~~lL~~y~i~l~G--K~vvViGrS~iVGkPla~lL~~~~ATVtichs~T-~~L~~~~~~ADIvV~AvGkp~~i~~ 218 (288)
T PRK14171 142 TALGCLAVIKKYEPNLTG--KNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT-HNLSSITSKADIVVAAIGSPLKLTA 218 (288)
T ss_pred CHHHHHHHHHHhCCCCCC--CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC-CCHHHHHhhCCEEEEccCCCCccCH
Confidence 344444455433 34 68999999987776422 344455565443 4589999999999999994433333
Q ss_pred HHHH---HHHHcCCCEee---CCCChHHH
Q psy1304 142 AVVK---ACIEAKTHHVD---ITGEPYFM 164 (184)
Q Consensus 142 ~Vae---ACieAGthYVD---ltGE~~~~ 164 (184)
..++ .+++.|+++++ ++||.+|-
T Consensus 219 ~~vk~GavVIDvGin~~~~gkl~GDVd~~ 247 (288)
T PRK14171 219 EYFNPESIVIDVGINRISGNKIIGDVDFE 247 (288)
T ss_pred HHcCCCCEEEEeeccccCCCCeECCccHH
Confidence 3332 36777777762 67777753
No 340
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=70.12 E-value=11 Score=30.61 Aligned_cols=77 Identities=17% Similarity=0.109 Sum_probs=42.2
Q ss_pred ccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccc--------cccCCCCCCEEEEeCC--CHHHHHH
Q psy1304 52 PFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCL--------YRENLIDIPIIIADLK--NESSILI 121 (184)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~l--------g~~~~~~v~~v~vDv~--D~~sL~a 121 (184)
+++||++-|.|-- .+---.++.+|++. + .++.+.+|+... ......++.++.+|++ |.+++.+
T Consensus 9 ~~~~k~vlItG~~---g~iG~~la~~l~~~--G--~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~ 81 (247)
T PRK08945 9 LLKDRIILVTGAG---DGIGREAALTYARH--G--ATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQ 81 (247)
T ss_pred ccCCCEEEEeCCC---chHHHHHHHHHHHC--C--CcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHH
Confidence 4566666665511 11001155555554 3 566677675421 1111134667888886 5555555
Q ss_pred Hhh-------cCcEEEecccc
Q psy1304 122 MAK-------KCRVILNCVGP 135 (184)
Q Consensus 122 ~l~-------~~dVVIN~aGP 135 (184)
+++ ..|+|||++|.
T Consensus 82 ~~~~~~~~~~~id~vi~~Ag~ 102 (247)
T PRK08945 82 LADTIEEQFGRLDGVLHNAGL 102 (247)
T ss_pred HHHHHHHHhCCCCEEEECCcc
Confidence 443 57999999985
No 341
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=70.00 E-value=4.2 Score=38.31 Aligned_cols=12 Identities=25% Similarity=0.725 Sum_probs=10.1
Q ss_pred hhcCcEEEeccc
Q psy1304 123 AKKCRVILNCVG 134 (184)
Q Consensus 123 l~~~dVVIN~aG 134 (184)
+.++|+||||..
T Consensus 388 l~~~DiVInatP 399 (477)
T PRK09310 388 LHRIDIIINCLP 399 (477)
T ss_pred cCCCCEEEEcCC
Confidence 468999999984
No 342
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=69.91 E-value=8.2 Score=33.06 Aligned_cols=42 Identities=12% Similarity=0.343 Sum_probs=34.4
Q ss_pred CHHHHHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEeeC
Q psy1304 115 NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDI 157 (184)
Q Consensus 115 D~~sL~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDl 157 (184)
+.+.+.++++++|+||+|...+. .-..+-++|.+.|+.+|.-
T Consensus 104 ~~~~~~~~~~~~DlVvd~~D~~~-~r~~ln~~~~~~~ip~v~~ 145 (240)
T TIGR02355 104 DDAELAALIAEHDIVVDCTDNVE-VRNQLNRQCFAAKVPLVSG 145 (240)
T ss_pred CHHHHHHHhhcCCEEEEcCCCHH-HHHHHHHHHHHcCCCEEEE
Confidence 44667889999999999998764 3466789999999999873
No 343
>PRK08328 hypothetical protein; Provisional
Probab=69.47 E-value=9.1 Score=32.44 Aligned_cols=42 Identities=17% Similarity=0.146 Sum_probs=32.9
Q ss_pred CHHHHHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEeeC
Q psy1304 115 NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDI 157 (184)
Q Consensus 115 D~~sL~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDl 157 (184)
+++.+.++++++|+||+|...+. .-.-+-++|.+.|+.+|+-
T Consensus 108 ~~~~~~~~l~~~D~Vid~~d~~~-~r~~l~~~~~~~~ip~i~g 149 (231)
T PRK08328 108 SEENIDEVLKGVDVIVDCLDNFE-TRYLLDDYAHKKGIPLVHG 149 (231)
T ss_pred CHHHHHHHHhcCCEEEECCCCHH-HHHHHHHHHHHcCCCEEEE
Confidence 44567889999999999997653 3356777899999998773
No 344
>PLN02730 enoyl-[acyl-carrier-protein] reductase
Probab=69.42 E-value=11 Score=33.36 Aligned_cols=35 Identities=14% Similarity=0.074 Sum_probs=20.6
Q ss_pred ccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEe
Q psy1304 52 PFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGL 91 (184)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaL 91 (184)
.++||+.-|.|- -|.|| |-.++|+..-..-.+|.+
T Consensus 6 ~l~gk~alITGa-~~s~G----IG~a~A~~la~~Ga~Vv~ 40 (303)
T PLN02730 6 DLRGKRAFIAGV-ADDNG----YGWAIAKALAAAGAEILV 40 (303)
T ss_pred CCCCCEEEEeCC-CCCCc----HHHHHHHHHHHCCCEEEE
Confidence 488999888882 11245 666666433221177887
No 345
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=69.29 E-value=2.3 Score=39.47 Aligned_cols=90 Identities=13% Similarity=0.213 Sum_probs=59.5
Q ss_pred CchhhhhhhCC----CCCceeEEeeeecccccccCC-----CCCCEEEEeCCCHHHHHHHhhcCcEEEeccccccccchH
Q psy1304 72 PRPSAYKADAP----TSNLTRLGLLGARDCLYRENL-----IDIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYGEA 142 (184)
Q Consensus 72 ~r~~~~La~~~----~~~~~~iaLAGrr~~lg~~~~-----~~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~g~~ 142 (184)
|+.+-.|.+.+ .+ .++++-||+..-|.+.. .+...-.|.... ..|.+.++++|+||.++|=-......
T Consensus 215 p~avielL~~y~i~l~G--K~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T-~nl~~~~r~ADIVIsAvGkp~~i~~d 291 (364)
T PLN02616 215 PKGCIELLHRYNVEIKG--KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-KNPEEITREADIIISAVGQPNMVRGS 291 (364)
T ss_pred HHHHHHHHHHhCCCCCC--CEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC-CCHHHHHhhCCEEEEcCCCcCcCCHH
Confidence 44444555433 34 68999999987776432 344555565443 45889999999999999954444333
Q ss_pred HHH---HHHHcCCCEee---------CCCChHHH
Q psy1304 143 VVK---ACIEAKTHHVD---------ITGEPYFM 164 (184)
Q Consensus 143 Vae---ACieAGthYVD---------ltGE~~~~ 164 (184)
.++ -+++.|++|+| ++||.+|-
T Consensus 292 ~vK~GAvVIDVGIn~~~~~~~~~g~klvGDVdfe 325 (364)
T PLN02616 292 WIKPGAVVIDVGINPVEDASSPRGYRLVGDVCYE 325 (364)
T ss_pred HcCCCCEEEeccccccccccccCCCeEEecCcHH
Confidence 333 36888999873 67888763
No 346
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=69.27 E-value=2.6 Score=37.89 Aligned_cols=91 Identities=16% Similarity=0.246 Sum_probs=58.2
Q ss_pred CCchhhhhhhCC----CCCceeEEeeeecccccccCC-----C----CCCEEEEeCCCHHHHHHHhhcCcEEEecccccc
Q psy1304 71 NPRPSAYKADAP----TSNLTRLGLLGARDCLYRENL-----I----DIPIIIADLKNESSILIMAKKCRVILNCVGPYT 137 (184)
Q Consensus 71 ~~r~~~~La~~~----~~~~~~iaLAGrr~~lg~~~~-----~----~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~ 137 (184)
-|+.+-.|.+.+ .+ .++++-||+..-|.+.. . +.....|.... ..|.+.++++|+||.++|--.
T Consensus 140 Tp~av~~lL~~~~i~l~G--K~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T-~nl~~~~~~ADIvIsAvGkp~ 216 (293)
T PRK14185 140 TPNGILELLKRYHIETSG--KKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS-KNLKKECLEADIIIAALGQPE 216 (293)
T ss_pred CHHHHHHHHHHhCCCCCC--CEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC-CCHHHHHhhCCEEEEccCCcC
Confidence 344445555432 34 78999999887665422 2 34555555433 458999999999999999444
Q ss_pred ccchHHHH---HHHHcCCCEe-e--------CCCChHHH
Q psy1304 138 WYGEAVVK---ACIEAKTHHV-D--------ITGEPYFM 164 (184)
Q Consensus 138 ~~g~~Vae---ACieAGthYV-D--------ltGE~~~~ 164 (184)
......++ ..++.|++++ | ++||.+|-
T Consensus 217 ~i~~~~vk~gavVIDvGin~~~~~~~~~g~klvGDVdf~ 255 (293)
T PRK14185 217 FVKADMVKEGAVVIDVGTTRVPDATRKSGFKLTGDVKFD 255 (293)
T ss_pred ccCHHHcCCCCEEEEecCcccccccccCCCeeEcCCCHH
Confidence 44444443 4677888876 3 67777753
No 347
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=69.12 E-value=5.2 Score=33.95 Aligned_cols=113 Identities=8% Similarity=0.070 Sum_probs=63.3
Q ss_pred ccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecc----ccccc------CC-CCCCEEEEeCCCHHHHH
Q psy1304 52 PFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARD----CLYRE------NL-IDIPIIIADLKNESSIL 120 (184)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~----~lg~~------~~-~~v~~v~vDv~D~~sL~ 120 (184)
.++|+++-|-|-=--||+ ++.+|+...-. .-+|.+..|+. +.... .. ...... +.. .++.
T Consensus 22 ~l~~~rvlvlGAGgAg~a----iA~~L~~~G~~-~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~--~~~--~~l~ 92 (226)
T cd05311 22 KIEEVKIVINGAGAAGIA----IARLLLAAGAK-PENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPE--KTG--GTLK 92 (226)
T ss_pred CccCCEEEEECchHHHHH----HHHHHHHcCcC-cceEEEEeCCCccccccchhhhHHHHHHHHHhccC--ccc--CCHH
Confidence 467777777664444455 66666654321 11577887762 21100 00 011000 111 2466
Q ss_pred HHhhcCcEEEeccccccccchHHHHHHHHcCCCEeeCCCChHHHHHHHHHhHHHHHHcCCe
Q psy1304 121 IMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVQ 181 (184)
Q Consensus 121 a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltGE~~~~~~ii~~lhe~AkaaGV~ 181 (184)
+.++++|+||||.+|... ...+++...+..+.| |+. .|. . ..+.++|++.|+.
T Consensus 93 ~~l~~~dvlIgaT~~G~~-~~~~l~~m~~~~ivf-~ls-nP~--~---e~~~~~A~~~ga~ 145 (226)
T cd05311 93 EALKGADVFIGVSRPGVV-KKEMIKKMAKDPIVF-ALA-NPV--P---EIWPEEAKEAGAD 145 (226)
T ss_pred HHHhcCCEEEeCCCCCCC-CHHHHHhhCCCCEEE-EeC-CCC--C---cCCHHHHHHcCCc
Confidence 777899999999986654 456666555555656 777 332 1 3477788888874
No 348
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=69.05 E-value=1.9 Score=38.47 Aligned_cols=90 Identities=19% Similarity=0.300 Sum_probs=57.8
Q ss_pred CCchhhhhhhCC----CCCceeEEeeeecccccccCC-----CCCCEEEEeCCCHHHHHHHhhcCcEEEeccccccccch
Q psy1304 71 NPRPSAYKADAP----TSNLTRLGLLGARDCLYRENL-----IDIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYGE 141 (184)
Q Consensus 71 ~~r~~~~La~~~----~~~~~~iaLAGrr~~lg~~~~-----~~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~g~ 141 (184)
-|+.+-.|.+.+ .+ .++++-||+...|.+.. .+.....|+-.. ..|.+.++++|+||.++|--.....
T Consensus 141 Tp~av~~lL~~~~i~l~G--k~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T-~~l~~~~~~ADIvIsAvGkp~~i~~ 217 (278)
T PRK14172 141 TPNSVITLIKSLNIDIEG--KEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT-KNLKEVCKKADILVVAIGRPKFIDE 217 (278)
T ss_pred CHHHHHHHHHHhCCCCCC--CEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC-CCHHHHHhhCCEEEEcCCCcCccCH
Confidence 345555555433 45 79999999987776422 345555666543 4589999999999999994433333
Q ss_pred HHHH---HHHHcCCCEee--CCCChHH
Q psy1304 142 AVVK---ACIEAKTHHVD--ITGEPYF 163 (184)
Q Consensus 142 ~Vae---ACieAGthYVD--ltGE~~~ 163 (184)
..++ .+++.|++++| ++||.+|
T Consensus 218 ~~ik~gavVIDvGin~~~gkl~GDvd~ 244 (278)
T PRK14172 218 EYVKEGAIVIDVGTSSVNGKITGDVNF 244 (278)
T ss_pred HHcCCCcEEEEeeccccCCceeeeccH
Confidence 3222 35666777763 6677765
No 349
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=68.92 E-value=5.8 Score=29.56 Aligned_cols=39 Identities=8% Similarity=0.020 Sum_probs=28.1
Q ss_pred hcCcEEEeccccccccch-HHHHHHHHcCCCEeeCCCChH
Q psy1304 124 KKCRVILNCVGPYTWYGE-AVVKACIEAKTHHVDITGEPY 162 (184)
Q Consensus 124 ~~~dVVIN~aGPf~~~g~-~VaeACieAGthYVDltGE~~ 162 (184)
.++|+|+.|+++-..... ..+..+++.|+..+|+++...
T Consensus 64 ~~~DvV~~~~~~~~~~~~~~~~~~~~~~g~~viD~s~~~~ 103 (122)
T smart00859 64 LAVDIVFLALPHGVSKEIAPLLPKAAEAGVKVIDLSSAFR 103 (122)
T ss_pred cCCCEEEEcCCcHHHHHHHHHHHhhhcCCCEEEECCcccc
Confidence 589999999976644321 123566799999999998644
No 350
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=68.92 E-value=5.3 Score=45.27 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=28.1
Q ss_pred CCCEEEEeCCCHHHHHHHhhc------CcEEEecccccc
Q psy1304 105 DIPIIIADLKNESSILIMAKK------CRVILNCVGPYT 137 (184)
Q Consensus 105 ~v~~v~vDv~D~~sL~a~l~~------~dVVIN~aGPf~ 137 (184)
++.++.||+.|.+++.++++. .|+|||++|-..
T Consensus 2095 ~v~y~~~DVtD~~av~~av~~v~~~g~IDgVVhnAGv~~ 2133 (2582)
T TIGR02813 2095 SAEYASADVTNSVSVAATVQPLNKTLQITGIIHGAGVLA 2133 (2582)
T ss_pred cEEEEEccCCCHHHHHHHHHHHHHhCCCcEEEECCccCC
Confidence 567899999999999988874 699999999653
No 351
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=68.91 E-value=7.9 Score=34.57 Aligned_cols=82 Identities=11% Similarity=0.112 Sum_probs=51.6
Q ss_pred CCchhhhhhhCCCCC--ceeEEeeeeccccccc---CC--CCCCEEEEeCCCHHHHHHHhhcCcEEEeccc-cccccchH
Q psy1304 71 NPRPSAYKADAPTSN--LTRLGLLGARDCLYRE---NL--IDIPIIIADLKNESSILIMAKKCRVILNCVG-PYTWYGEA 142 (184)
Q Consensus 71 ~~r~~~~La~~~~~~--~~~iaLAGrr~~lg~~---~~--~~v~~v~vDv~D~~sL~a~l~~~dVVIN~aG-Pf~~~g~~ 142 (184)
-|+.+-.|.+.+.-+ -.++.+-||+...|.+ .. .+.....++. +...|.+.++++|+||+++| |.... ..
T Consensus 135 Tp~av~~ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs-~t~~L~~~~~~ADIvI~Avgk~~lv~-~~ 212 (279)
T PRK14178 135 TPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHS-KTENLKAELRQADILVSAAGKAGFIT-PD 212 (279)
T ss_pred CHHHHHHHHHHcCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEec-ChhHHHHHHhhCCEEEECCCcccccC-HH
Confidence 455555555444211 1689999998877765 11 3344455554 45679999999999999999 64433 33
Q ss_pred HHHHHHHcCCCEeeCC
Q psy1304 143 VVKACIEAKTHHVDIT 158 (184)
Q Consensus 143 VaeACieAGthYVDlt 158 (184)
. +.-|+--||++
T Consensus 213 ~----vk~GavVIDVg 224 (279)
T PRK14178 213 M----VKPGATVIDVG 224 (279)
T ss_pred H----cCCCcEEEEee
Confidence 3 25666666653
No 352
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=68.86 E-value=13 Score=34.37 Aligned_cols=94 Identities=16% Similarity=0.224 Sum_probs=60.0
Q ss_pred ccccCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccccCC---CCCC-E--EEEeCCCHHHHH
Q psy1304 47 IGESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRENL---IDIP-I--IIADLKNESSIL 120 (184)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~~~---~~v~-~--v~vDv~D~~sL~ 120 (184)
|.+-++|+|-- +.+.|+.+| + +.+.++.-++..|.... ++.. . .....-|++.+
T Consensus 7 IvGasGYtG~E----------------L~rlL~~Hp-~--ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~- 66 (349)
T COG0002 7 IVGASGYTGLE----------------LLRLLAGHP-D--VELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKI- 66 (349)
T ss_pred EEcCCCCcHHH----------------HHHHHhcCC-C--eEEEEeechhhcCCchHHhCcccccccccccccCChhhh-
Confidence 56677888877 667777554 4 55666654444443211 2222 1 22223344443
Q ss_pred HHhhcCcEEEeccccccccchHHHHHHHHcCCCEeeCCCChHH
Q psy1304 121 IMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYF 163 (184)
Q Consensus 121 a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltGE~~~ 163 (184)
...+||+|+.|. |- .....++..-++.|+.-||++++.-+
T Consensus 67 -~~~~~DvvFlal-Ph-g~s~~~v~~l~~~g~~VIDLSadfR~ 106 (349)
T COG0002 67 -ELDECDVVFLAL-PH-GVSAELVPELLEAGCKVIDLSADFRL 106 (349)
T ss_pred -hcccCCEEEEec-Cc-hhHHHHHHHHHhCCCeEEECCccccc
Confidence 456799999998 43 44578899999999999999997544
No 353
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=68.24 E-value=10 Score=34.53 Aligned_cols=62 Identities=11% Similarity=0.086 Sum_probs=42.4
Q ss_pred HHHHHhhcCcEEEecccc--ccccchHHHHHHHHcCCC-EeeCCCChHHHHHHHHHhHHHHHHcCCeee
Q psy1304 118 SILIMAKKCRVILNCVGP--YTWYGEAVVKACIEAKTH-HVDITGEPYFMEYMQYEYNTRAQESEVQKC 183 (184)
Q Consensus 118 sL~a~l~~~dVVIN~aGP--f~~~g~~VaeACieAGth-YVDltGE~~~~~~ii~~lhe~AkaaGV~Iv 183 (184)
++++++++.|+++-++.. -......++.+|+++|.| ++. -|-..++. .++-+.|+++|+.++
T Consensus 55 ~~eell~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~E---KPla~~Ea-~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 55 EVEELPDDIDIACVVVRSAIVGGQGSALARALLARGIHVLQE---HPLHPRDI-QDLLRLAERQGRRYL 119 (343)
T ss_pred CHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHhCCCeEEEc---CCCCHHHH-HHHHHHHHHcCCEEE
Confidence 466777777766666521 123347999999999999 443 22224665 788899999998775
No 354
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=68.02 E-value=2.6 Score=38.04 Aligned_cols=89 Identities=12% Similarity=0.207 Sum_probs=56.0
Q ss_pred CchhhhhhhCC----CCCceeEEeeeecccccccCC-----CCCCEEEEeCCCHHHHHHHhhcCcEEEeccccccccchH
Q psy1304 72 PRPSAYKADAP----TSNLTRLGLLGARDCLYRENL-----IDIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYGEA 142 (184)
Q Consensus 72 ~r~~~~La~~~----~~~~~~iaLAGrr~~lg~~~~-----~~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~g~~ 142 (184)
|+.+-.|.+.+ .+ .++.+-||+..-|.+.. .+.....|+..- ..|.+.++++|+||.++|--......
T Consensus 151 p~avi~lL~~~~i~l~G--k~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T-~nl~~~~~~ADIvv~AvGk~~~i~~~ 227 (299)
T PLN02516 151 PKGCLELLSRSGIPIKG--KKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRT-PDPESIVREADIVIAAAGQAMMIKGD 227 (299)
T ss_pred HHHHHHHHHHhCCCCCC--CEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC-CCHHHHHhhCCEEEEcCCCcCccCHH
Confidence 44444444433 34 79999999987776422 445555665543 45899999999999999953333322
Q ss_pred HHH---HHHHcCCCEee---------CCCChHH
Q psy1304 143 VVK---ACIEAKTHHVD---------ITGEPYF 163 (184)
Q Consensus 143 Vae---ACieAGthYVD---------ltGE~~~ 163 (184)
-++ .+++.|++|+| ++||.+|
T Consensus 228 ~vk~gavVIDvGin~~~~~~~~~g~kl~GDvd~ 260 (299)
T PLN02516 228 WIKPGAAVIDVGTNAVSDPSKKSGYRLVGDVDF 260 (299)
T ss_pred HcCCCCEEEEeeccccCcccccCCCceEcCcCh
Confidence 222 35667777752 5666654
No 355
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=67.99 E-value=2.8 Score=37.55 Aligned_cols=93 Identities=12% Similarity=0.145 Sum_probs=56.5
Q ss_pred CCchhhhhhhCCCCC--ceeEEeeeecccccccCC-----CCCCEEEEeCCCHHHHHHHhhcCcEEEeccccccccchHH
Q psy1304 71 NPRPSAYKADAPTSN--LTRLGLLGARDCLYRENL-----IDIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYGEAV 143 (184)
Q Consensus 71 ~~r~~~~La~~~~~~--~~~iaLAGrr~~lg~~~~-----~~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~g~~V 143 (184)
-|+.+-.|.+.+.=+ -.++.+-||+...|.+.. .+.....|+-.. ..|...++++|+||+++|--.......
T Consensus 142 Tp~av~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T-~~l~~~~~~ADIvi~avG~p~~v~~~~ 220 (285)
T PRK10792 142 TPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT-KNLRHHVRNADLLVVAVGKPGFIPGEW 220 (285)
T ss_pred CHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC-CCHHHHHhhCCEEEEcCCCcccccHHH
Confidence 344444555433211 179999999987665422 345556666543 568999999999999998332222222
Q ss_pred HH---HHHHcCCCEe---eCCCChHHH
Q psy1304 144 VK---ACIEAKTHHV---DITGEPYFM 164 (184)
Q Consensus 144 ae---ACieAGthYV---DltGE~~~~ 164 (184)
++ .+++.|++|+ -++||.+|-
T Consensus 221 vk~gavVIDvGin~~~~gk~~GDvd~~ 247 (285)
T PRK10792 221 IKPGAIVIDVGINRLEDGKLVGDVEFE 247 (285)
T ss_pred cCCCcEEEEcccccccCCCcCCCcCHH
Confidence 22 2566777776 366777653
No 356
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=67.83 E-value=17 Score=32.23 Aligned_cols=53 Identities=13% Similarity=0.110 Sum_probs=43.8
Q ss_pred CCCCEEEEeCCCHHHHHHHhhc-----CcEEEeccccccccchHHHHHHHHcCCCEeeCCC
Q psy1304 104 IDIPIIIADLKNESSILIMAKK-----CRVILNCVGPYTWYGEAVVKACIEAKTHHVDITG 159 (184)
Q Consensus 104 ~~v~~v~vDv~D~~sL~a~l~~-----~dVVIN~aGPf~~~g~~VaeACieAGthYVDltG 159 (184)
...+++++|-.+++.|.++++. .++.|.+.| .....=++..+++|+||+.++.
T Consensus 201 ~GaDiI~LDn~~~e~l~~~v~~~~~~~~~~~ieAsG---gIt~~ni~~ya~~GvD~IsvG~ 258 (273)
T PRK05848 201 AGADIVMCDNMSVEEIKEVVAYRNANYPHVLLEASG---NITLENINAYAKSGVDAISSGS 258 (273)
T ss_pred cCCCEEEECCCCHHHHHHHHHHhhccCCCeEEEEEC---CCCHHHHHHHHHcCCCEEEeCh
Confidence 4578999999999999999885 377888888 3356778888999999999854
No 357
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=67.81 E-value=2.7 Score=37.82 Aligned_cols=91 Identities=11% Similarity=0.215 Sum_probs=59.0
Q ss_pred CCchhhhhhhCC----CCCceeEEeeeecccccccCC-----CCCCEEEEeCCCHHHHHHHhhcCcEEEeccccccccch
Q psy1304 71 NPRPSAYKADAP----TSNLTRLGLLGARDCLYRENL-----IDIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYGE 141 (184)
Q Consensus 71 ~~r~~~~La~~~----~~~~~~iaLAGrr~~lg~~~~-----~~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~g~ 141 (184)
-|+.+-.|.+.+ .+ .++++.||+...|.+.. .+.....|+..- ..|.+.++++|+||.++|--.....
T Consensus 143 Tp~avi~lL~~~~i~l~G--k~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T-~~l~~~~~~ADIvVsAvGkp~~i~~ 219 (294)
T PRK14187 143 TPKGCLYLIKTITRNLSG--SDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT-RDLADYCSKADILVAAVGIPNFVKY 219 (294)
T ss_pred CHHHHHHHHHHhCCCCCC--CEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC-CCHHHHHhhCCEEEEccCCcCccCH
Confidence 455555566433 33 69999999987776422 345555666543 3588999999999999995443333
Q ss_pred HHHH---HHHHcCCCEee------CCCChHHH
Q psy1304 142 AVVK---ACIEAKTHHVD------ITGEPYFM 164 (184)
Q Consensus 142 ~Vae---ACieAGthYVD------ltGE~~~~ 164 (184)
.-++ .+++.|++|+| ++||.+|-
T Consensus 220 ~~ik~gaiVIDVGin~~~~~~~~kl~GDvd~e 251 (294)
T PRK14187 220 SWIKKGAIVIDVGINSIEEGGVKKFVGDVDFA 251 (294)
T ss_pred HHcCCCCEEEEecccccCCCCccceeCCccHH
Confidence 3332 36778888863 57777654
No 358
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=67.25 E-value=2.1 Score=38.28 Aligned_cols=91 Identities=15% Similarity=0.204 Sum_probs=57.0
Q ss_pred CCchhhhhhhCC----CCCceeEEeeeecccccccCC-----CCCCEEEEeCCCHHHHHHHhhcCcEEEeccccccccch
Q psy1304 71 NPRPSAYKADAP----TSNLTRLGLLGARDCLYRENL-----IDIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYGE 141 (184)
Q Consensus 71 ~~r~~~~La~~~----~~~~~~iaLAGrr~~lg~~~~-----~~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~g~ 141 (184)
-|+.+-.|.+.+ .+ .++.+-||+..-|.+.. .+.....|.- ....|.+.++++|+||.++|=-.....
T Consensus 140 Tp~avi~lL~~~~i~l~G--k~vvViGrS~~VG~Pla~lL~~~~AtVti~hs-~T~~l~~~~~~ADIvV~AvGkp~~i~~ 216 (281)
T PRK14183 140 TPLGVMELLEEYEIDVKG--KDVCVVGASNIVGKPMAALLLNANATVDICHI-FTKDLKAHTKKADIVIVGVGKPNLITE 216 (281)
T ss_pred cHHHHHHHHHHcCCCCCC--CEEEEECCCCcchHHHHHHHHHCCCEEEEeCC-CCcCHHHHHhhCCEEEEecCcccccCH
Confidence 355555565543 34 69999999987665422 3333444443 335688999999999999984333333
Q ss_pred HHHH---HHHHcCCCEe---eCCCChHHH
Q psy1304 142 AVVK---ACIEAKTHHV---DITGEPYFM 164 (184)
Q Consensus 142 ~Vae---ACieAGthYV---DltGE~~~~ 164 (184)
..++ .+++.|++|+ -++||.+|-
T Consensus 217 ~~vk~gavvIDvGin~~~~gkl~GDVd~~ 245 (281)
T PRK14183 217 DMVKEGAIVIDIGINRTEDGRLVGDVDFE 245 (281)
T ss_pred HHcCCCcEEEEeeccccCCCCeECCccHH
Confidence 3333 4677777775 256776653
No 359
>KOG1199|consensus
Probab=67.05 E-value=5.9 Score=34.46 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=42.5
Q ss_pred hhhhhhhCCCCCceeEEeeeecccccccCC----CCCCEEEEeCCCHHHHHHHhh-------cCcEEEecccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRENL----IDIPIIIADLKNESSILIMAK-------KCRVILNCVGPYT 137 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~~~----~~v~~v~vDv~D~~sL~a~l~-------~~dVVIN~aGPf~ 137 (184)
.++-|++.. .+++|+...+.+|.+-+ .++-+.-+|+..++++.++++ +.|+.|||+|--+
T Consensus 25 taerlakqg----asv~lldlp~skg~~vakelg~~~vf~padvtsekdv~aala~ak~kfgrld~~vncagia~ 95 (260)
T KOG1199|consen 25 TAERLAKQG----ASVALLDLPQSKGADVAKELGGKVVFTPADVTSEKDVRAALAKAKAKFGRLDALVNCAGIAY 95 (260)
T ss_pred HHHHHHhcC----ceEEEEeCCcccchHHHHHhCCceEEeccccCcHHHHHHHHHHHHhhccceeeeeeccceee
Confidence 455666665 55777765555553211 567788899999999998876 4699999999643
No 360
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=66.98 E-value=2.5 Score=37.84 Aligned_cols=90 Identities=20% Similarity=0.244 Sum_probs=58.0
Q ss_pred CCchhhhhhhCC----CCCceeEEeeeecccccccCC-----CCCCEEEEeCCCHHHHHHHhhcCcEEEeccccccccch
Q psy1304 71 NPRPSAYKADAP----TSNLTRLGLLGARDCLYRENL-----IDIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYGE 141 (184)
Q Consensus 71 ~~r~~~~La~~~----~~~~~~iaLAGrr~~lg~~~~-----~~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~g~ 141 (184)
-|+.+-.|.+.+ .+ .++++-||+...|.+.. .+.....|.-.. ..|...++++|+||.++|--.....
T Consensus 139 Tp~avi~lL~~~~i~l~G--k~vvViGrS~iVGkPla~lL~~~~atVtichs~T-~~l~~~~~~ADIvI~AvG~p~~i~~ 215 (282)
T PRK14169 139 TPYGIMALLDAYDIDVAG--KRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT-RNLKQLTKEADILVVAVGVPHFIGA 215 (282)
T ss_pred CHHHHHHHHHHhCCCCCC--CEEEEECCCccchHHHHHHHHHCCCEEEEECCCC-CCHHHHHhhCCEEEEccCCcCccCH
Confidence 344444555433 34 79999999987776432 344444554332 4589999999999999995554444
Q ss_pred HHHH---HHHHcCCCEee---CCCChHH
Q psy1304 142 AVVK---ACIEAKTHHVD---ITGEPYF 163 (184)
Q Consensus 142 ~Vae---ACieAGthYVD---ltGE~~~ 163 (184)
..++ .+++.|+++++ ++||.+|
T Consensus 216 ~~vk~GavVIDvGin~~~~gkl~GDVd~ 243 (282)
T PRK14169 216 DAVKPGAVVIDVGISRGADGKLLGDVDE 243 (282)
T ss_pred HHcCCCcEEEEeeccccCCCCeeecCcH
Confidence 4444 46777777752 5566665
No 361
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=66.81 E-value=2.4 Score=38.01 Aligned_cols=90 Identities=11% Similarity=0.207 Sum_probs=56.7
Q ss_pred CchhhhhhhCC----CCCceeEEeeeecccccccCC-----C----CCCEEEEeCCCHHHHHHHhhcCcEEEeccccccc
Q psy1304 72 PRPSAYKADAP----TSNLTRLGLLGARDCLYRENL-----I----DIPIIIADLKNESSILIMAKKCRVILNCVGPYTW 138 (184)
Q Consensus 72 ~r~~~~La~~~----~~~~~~iaLAGrr~~lg~~~~-----~----~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~ 138 (184)
|+.+-.|.+.+ .+ .++++-||+..-|.+.. . +.....|... ...|.+.++++|+||.++|--..
T Consensus 137 p~avi~lL~~~~i~l~G--k~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~-T~~l~~~~~~ADIvV~AvG~p~~ 213 (287)
T PRK14181 137 PAGIIELLKYYEIPLHG--RHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ-SENLTEILKTADIIIAAIGVPLF 213 (287)
T ss_pred HHHHHHHHHHhCCCCCC--CEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC-CCCHHHHHhhCCEEEEccCCcCc
Confidence 44444454433 34 68899998886665422 2 3455555543 34589999999999999994433
Q ss_pred cchHHHH---HHHHcCCCEee--------CCCChHHH
Q psy1304 139 YGEAVVK---ACIEAKTHHVD--------ITGEPYFM 164 (184)
Q Consensus 139 ~g~~Vae---ACieAGthYVD--------ltGE~~~~ 164 (184)
.....++ .+++.|++|++ ++||.+|-
T Consensus 214 i~~~~ik~GavVIDvGin~~~~~~~~g~kl~GDVd~e 250 (287)
T PRK14181 214 IKEEMIAEKAVIVDVGTSRVPAANPKGYILVGDVDFN 250 (287)
T ss_pred cCHHHcCCCCEEEEecccccccccCCCCeeEeccchH
Confidence 3333333 36778888862 67777753
No 362
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=66.68 E-value=5 Score=33.16 Aligned_cols=32 Identities=13% Similarity=0.146 Sum_probs=26.7
Q ss_pred CCCEEEEeCCCHHHHHHHhhc-------CcEEEeccccc
Q psy1304 105 DIPIIIADLKNESSILIMAKK-------CRVILNCVGPY 136 (184)
Q Consensus 105 ~v~~v~vDv~D~~sL~a~l~~-------~dVVIN~aGPf 136 (184)
++.++++|+.|++++.+++.. .|+|||++|-.
T Consensus 69 ~~~~~~~D~~~~~~i~~~~~~~~~~~g~id~li~~ag~~ 107 (256)
T PRK12859 69 KVSSMELDLTQNDAPKELLNKVTEQLGYPHILVNNAAYS 107 (256)
T ss_pred eEEEEEcCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCC
Confidence 567889999999999988853 59999999843
No 363
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=66.35 E-value=3.7 Score=36.76 Aligned_cols=90 Identities=10% Similarity=0.187 Sum_probs=54.5
Q ss_pred CCchhhhhhhCC----CCCceeEEeeeecccccccCC-----CCCCEEEEeCCCHHHHHHHhhcCcEEEeccccccccch
Q psy1304 71 NPRPSAYKADAP----TSNLTRLGLLGARDCLYRENL-----IDIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYGE 141 (184)
Q Consensus 71 ~~r~~~~La~~~----~~~~~~iaLAGrr~~lg~~~~-----~~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~g~ 141 (184)
-|+.+-.|.+.+ .+ .++.+-||+...|.+.. .+.....|+... ..|.+.++++|+||.++|--.....
T Consensus 140 Tp~avi~lL~~~~i~l~G--k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t-~~l~~~~~~ADIvV~AvG~p~~i~~ 216 (285)
T PRK14191 140 TPMGVMRLLKHYHIEIKG--KDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT-KDLSFYTQNADIVCVGVGKPDLIKA 216 (285)
T ss_pred cHHHHHHHHHHhCCCCCC--CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc-HHHHHHHHhCCEEEEecCCCCcCCH
Confidence 344555555433 34 78999999876555322 334455555544 5689999999999999984433333
Q ss_pred HHHH---HHHHcCCCEe---eCCCChHH
Q psy1304 142 AVVK---ACIEAKTHHV---DITGEPYF 163 (184)
Q Consensus 142 ~Vae---ACieAGthYV---DltGE~~~ 163 (184)
..++ .+++.|++|+ -++||.+|
T Consensus 217 ~~vk~GavVIDvGi~~~~~gklvGDvd~ 244 (285)
T PRK14191 217 SMVKKGAVVVDIGINRLNDGRLVGDVDF 244 (285)
T ss_pred HHcCCCcEEEEeecccccCCceeccccH
Confidence 3332 3556666664 25566554
No 364
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=65.89 E-value=3.3 Score=37.11 Aligned_cols=90 Identities=11% Similarity=0.152 Sum_probs=58.0
Q ss_pred CCchhhhhhhCC----CCCceeEEeeeecccccccCC-----CCCCEEEEeCCCHHHHHHHhhcCcEEEeccccccccch
Q psy1304 71 NPRPSAYKADAP----TSNLTRLGLLGARDCLYRENL-----IDIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYGE 141 (184)
Q Consensus 71 ~~r~~~~La~~~----~~~~~~iaLAGrr~~lg~~~~-----~~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~g~ 141 (184)
-|+.+-.|.+.+ .+ .++++-||+...|.+.. .+.....|+-.. ..|.+.++++|+||.++|--.....
T Consensus 142 Tp~avi~ll~~y~i~l~G--k~vvViGrS~iVGkPla~lL~~~~atVt~chs~T-~~l~~~~~~ADIvIsAvGk~~~i~~ 218 (284)
T PRK14177 142 TPYGMVLLLKEYGIDVTG--KNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT-QNLPSIVRQADIIVGAVGKPEFIKA 218 (284)
T ss_pred CHHHHHHHHHHhCCCCCC--CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC-CCHHHHHhhCCEEEEeCCCcCccCH
Confidence 455555555433 34 68999999987776432 345566666543 4588999999999999994433333
Q ss_pred HHHH---HHHHcCCCEeeCCCChHHH
Q psy1304 142 AVVK---ACIEAKTHHVDITGEPYFM 164 (184)
Q Consensus 142 ~Vae---ACieAGthYVDltGE~~~~ 164 (184)
..++ .+++.|++|. ++||.+|-
T Consensus 219 ~~ik~gavVIDvGin~~-~~GDVd~~ 243 (284)
T PRK14177 219 DWISEGAVLLDAGYNPG-NVGDIEIS 243 (284)
T ss_pred HHcCCCCEEEEecCccc-ccCCcCHH
Confidence 3222 3567777764 56887753
No 365
>PLN02780 ketoreductase/ oxidoreductase
Probab=65.41 E-value=7.3 Score=34.14 Aligned_cols=59 Identities=15% Similarity=0.173 Sum_probs=34.7
Q ss_pred hhhhhhhCCCCCceeEEeeeeccccccc-------C--CCCCCEEEEeCCC--HHHHH---HHhhc--CcEEEeccccc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRE-------N--LIDIPIIIADLKN--ESSIL---IMAKK--CRVILNCVGPY 136 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~-------~--~~~v~~v~vDv~D--~~sL~---a~l~~--~dVVIN~aGPf 136 (184)
++..|++. + .++.+.+|+.+..++ . ..++.++.+|+.+ .+.++ +.+.+ .|++||++|..
T Consensus 69 lA~~La~~--G--~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~~didilVnnAG~~ 143 (320)
T PLN02780 69 FAFQLARK--G--LNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEGLDVGVLINNVGVS 143 (320)
T ss_pred HHHHHHHC--C--CCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcCCCccEEEEecCcC
Confidence 55555554 3 678888887643211 1 1245677889874 34333 33444 44999999854
No 366
>PRK14851 hypothetical protein; Provisional
Probab=64.89 E-value=11 Score=37.55 Aligned_cols=51 Identities=10% Similarity=0.082 Sum_probs=38.1
Q ss_pred CEEEEeCCCHHHHHHHhhcCcEEEecccccc-ccchHHHHHHHHcCCCEeeCC
Q psy1304 107 PIIIADLKNESSILIMAKKCRVILNCVGPYT-WYGEAVVKACIEAKTHHVDIT 158 (184)
Q Consensus 107 ~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~-~~g~~VaeACieAGthYVDlt 158 (184)
+.+...+ +++.+..+++++|+||+|...|. .....+.++|.+.|+.+|+.+
T Consensus 116 ~~~~~~i-~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g 167 (679)
T PRK14851 116 TPFPAGI-NADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAG 167 (679)
T ss_pred EEEecCC-ChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEee
Confidence 3333345 45678999999999999997653 233578889999999998754
No 367
>CHL00139 rpl18 ribosomal protein L18; Validated
Probab=64.82 E-value=13 Score=28.85 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=34.4
Q ss_pred ccchHHHHHHHHcCCC--EeeCCCChHHHHHHHHHhHHHHHHcCCe
Q psy1304 138 WYGEAVVKACIEAKTH--HVDITGEPYFMEYMQYEYNTRAQESEVQ 181 (184)
Q Consensus 138 ~~g~~VaeACieAGth--YVDltGE~~~~~~ii~~lhe~AkaaGV~ 181 (184)
..|.-+++-|+++|+. ++|..|.. +...+ ..+-|.|+++|+-
T Consensus 65 ~vG~lla~ra~~~gi~~vvfDrgg~~-yhGrV-~a~a~~are~GL~ 108 (109)
T CHL00139 65 LVGQKLAKKSLKKGITKVVFDRGGKL-YHGRI-KALAEAAREAGLQ 108 (109)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCCc-cchHH-HHHHHHHHHhCCC
Confidence 5578999999999999 88976555 55565 8999999999974
No 368
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=64.76 E-value=11 Score=34.03 Aligned_cols=42 Identities=10% Similarity=0.163 Sum_probs=33.9
Q ss_pred CHHHHHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEeeC
Q psy1304 115 NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDI 157 (184)
Q Consensus 115 D~~sL~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDl 157 (184)
+.+.+.++++++|+||+|...+. .-.-+-++|.+.++.+|..
T Consensus 215 ~~~~~~~~~~~~D~Vv~~~d~~~-~r~~ln~~~~~~~ip~i~~ 256 (376)
T PRK08762 215 TSDNVEALLQDVDVVVDGADNFP-TRYLLNDACVKLGKPLVYG 256 (376)
T ss_pred ChHHHHHHHhCCCEEEECCCCHH-HHHHHHHHHHHcCCCEEEE
Confidence 34567889999999999998664 2346889999999998875
No 369
>PRK08618 ornithine cyclodeaminase; Validated
Probab=64.45 E-value=1 Score=39.88 Aligned_cols=39 Identities=8% Similarity=0.010 Sum_probs=28.8
Q ss_pred HHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEeeCCCCh
Q psy1304 119 ILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEP 161 (184)
Q Consensus 119 L~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltGE~ 161 (184)
++++++++|+||+|. |.. .+++..+++.|+|-+-+..+.
T Consensus 186 ~~~~~~~aDiVi~aT-~s~---~p~i~~~l~~G~hV~~iGs~~ 224 (325)
T PRK08618 186 ADEAIEEADIIVTVT-NAK---TPVFSEKLKKGVHINAVGSFM 224 (325)
T ss_pred HHHHHhcCCEEEEcc-CCC---CcchHHhcCCCcEEEecCCCC
Confidence 566778999999998 433 344448999999987665543
No 370
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=63.96 E-value=13 Score=31.92 Aligned_cols=58 Identities=7% Similarity=-0.084 Sum_probs=31.4
Q ss_pred HHHHhhcCcEEEeccccccccchHHH------HHHHHcCCCEeeCCCChH-HHHHHHHHhHHHHHHcCCe
Q psy1304 119 ILIMAKKCRVILNCVGPYTWYGEAVV------KACIEAKTHHVDITGEPY-FMEYMQYEYNTRAQESEVQ 181 (184)
Q Consensus 119 L~a~l~~~dVVIN~aGPf~~~g~~Va------eACieAGthYVDltGE~~-~~~~ii~~lhe~AkaaGV~ 181 (184)
..++++++|+||-|+.|.... ..++ ..++..|...||.+.-.+ ..+ ++.+.+++.|+.
T Consensus 46 ~~~~~~~advVil~vp~~~~~-~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~----~~~~~~~~~g~~ 110 (288)
T TIGR01692 46 PAEAAEGADRVITMLPAGQHV-ISVYSGDEGILPKVAKGSLLIDCSTIDPDSAR----KLAELAAAHGAV 110 (288)
T ss_pred HHHHHhcCCEEEEeCCChHHH-HHHHcCcchHhhcCCCCCEEEECCCCCHHHHH----HHHHHHHHcCCc
Confidence 455677788888887654332 1222 233455666788775432 222 344555556654
No 371
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=63.85 E-value=3.8 Score=36.87 Aligned_cols=91 Identities=10% Similarity=0.174 Sum_probs=57.4
Q ss_pred CCchhhhhhhCC----CCCceeEEeeeecccccccCC-----C----CCCEEEEeCCCHHHHHHHhhcCcEEEecccccc
Q psy1304 71 NPRPSAYKADAP----TSNLTRLGLLGARDCLYRENL-----I----DIPIIIADLKNESSILIMAKKCRVILNCVGPYT 137 (184)
Q Consensus 71 ~~r~~~~La~~~----~~~~~~iaLAGrr~~lg~~~~-----~----~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~ 137 (184)
-|+.+-.|.+.+ .+ .++++-||+...|.+.. . +...-.|.. ....|.+.++++|+||.++|=-.
T Consensus 144 Tp~avi~lL~~~~i~l~G--k~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs-~T~~l~~~~~~ADIvVsAvGkp~ 220 (297)
T PRK14168 144 TPAGIQEMLVRSGVETSG--AEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHT-RSKNLARHCQRADILIVAAGVPN 220 (297)
T ss_pred CHHHHHHHHHHhCCCCCC--CEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecC-CCcCHHHHHhhCCEEEEecCCcC
Confidence 345555555433 34 68999999887665422 1 233334443 23458899999999999998443
Q ss_pred ccchHHHH---HHHHcCCCEee---------CCCChHHH
Q psy1304 138 WYGEAVVK---ACIEAKTHHVD---------ITGEPYFM 164 (184)
Q Consensus 138 ~~g~~Vae---ACieAGthYVD---------ltGE~~~~ 164 (184)
......++ -+++.|++|++ ++||.+|-
T Consensus 221 ~i~~~~ik~gavVIDvGin~~~~~~~~g~~~~~GDVdfe 259 (297)
T PRK14168 221 LVKPEWIKPGATVIDVGVNRVGTNESTGKAILSGDVDFD 259 (297)
T ss_pred ccCHHHcCCCCEEEecCCCccCccccCCCcceeccccHH
Confidence 33333332 36788888873 77888763
No 372
>KOG1205|consensus
Probab=63.45 E-value=7.4 Score=34.83 Aligned_cols=33 Identities=18% Similarity=0.322 Sum_probs=28.4
Q ss_pred CCCEEEEeCCCHHHHHHHh-------hcCcEEEecccccc
Q psy1304 105 DIPIIIADLKNESSILIMA-------KKCRVILNCVGPYT 137 (184)
Q Consensus 105 ~v~~v~vDv~D~~sL~a~l-------~~~dVVIN~aGPf~ 137 (184)
++..+++|+.|.+++.+++ .+.|++||-||-..
T Consensus 64 ~v~~~~~Dvs~~~~~~~~~~~~~~~fg~vDvLVNNAG~~~ 103 (282)
T KOG1205|consen 64 KVLVLQLDVSDEESVKKFVEWAIRHFGRVDVLVNNAGISL 103 (282)
T ss_pred ccEEEeCccCCHHHHHHHHHHHHHhcCCCCEEEecCcccc
Confidence 5889999999999999765 46899999999655
No 373
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=63.39 E-value=24 Score=29.22 Aligned_cols=41 Identities=15% Similarity=0.220 Sum_probs=32.7
Q ss_pred HHHHHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEeeC
Q psy1304 116 ESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDI 157 (184)
Q Consensus 116 ~~sL~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDl 157 (184)
.+....+++++|+||.|..|+. .-..+-+.|.+.++.++..
T Consensus 104 ~~~~~~~~~~~dvVi~~~d~~~-~~~~ln~~c~~~~ip~i~~ 144 (198)
T cd01485 104 DSNIEEYLQKFTLVIATEENYE-RTAKVNDVCRKHHIPFISC 144 (198)
T ss_pred hhhHHHHHhCCCEEEECCCCHH-HHHHHHHHHHHcCCCEEEE
Confidence 3456778999999999988753 3467889999999998764
No 374
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=63.13 E-value=37 Score=29.57 Aligned_cols=62 Identities=10% Similarity=-0.072 Sum_probs=42.6
Q ss_pred EEEeCCCHHHHHHHhhcCcE-EEeccccccccchHHHHHHHHcCCC-EeeCCCChHHHHHHHHHhH
Q psy1304 109 IIADLKNESSILIMAKKCRV-ILNCVGPYTWYGEAVVKACIEAKTH-HVDITGEPYFMEYMQYEYN 172 (184)
Q Consensus 109 v~vDv~D~~sL~a~l~~~dV-VIN~aGPf~~~g~~VaeACieAGth-YVDltGE~~~~~~ii~~lh 172 (184)
-.+|.-+-+.=-++-.++|+ .|.|+.|... =...++.|-+.|.+ |+|+.|.+.|.+.. +.+.
T Consensus 64 Kt~D~G~~e~~ma~~aGAd~~tV~g~A~~~T-I~~~i~~A~~~~~~v~iDl~~~~~~~~~~-~~l~ 127 (217)
T COG0269 64 KTADAGAIEARMAFEAGADWVTVLGAADDAT-IKKAIKVAKEYGKEVQIDLIGVWDPEQRA-KWLK 127 (217)
T ss_pred eecchhHHHHHHHHHcCCCEEEEEecCCHHH-HHHHHHHHHHcCCeEEEEeecCCCHHHHH-HHHH
Confidence 34455454443445567874 4677777633 37788889999998 99999999888775 4444
No 375
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=63.00 E-value=3.7 Score=36.70 Aligned_cols=91 Identities=16% Similarity=0.233 Sum_probs=58.8
Q ss_pred CCchhhhhhhCC----CCCceeEEeeeecccccccCC-----CCCCEEEEeCCCHHHHHHHhhcCcEEEeccccccccch
Q psy1304 71 NPRPSAYKADAP----TSNLTRLGLLGARDCLYRENL-----IDIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYGE 141 (184)
Q Consensus 71 ~~r~~~~La~~~----~~~~~~iaLAGrr~~lg~~~~-----~~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~g~ 141 (184)
-|+.+-.|.+.+ .+ .++++-||+..-|.+.. .+.....|+-.. ..|.+.++++|+||.++|--.....
T Consensus 141 Tp~aii~lL~~y~i~l~G--k~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T-~dl~~~~k~ADIvIsAvGkp~~i~~ 217 (282)
T PRK14180 141 TPKGIMTMLREYGIKTEG--AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT-TDLKSHTTKADILIVAVGKPNFITA 217 (282)
T ss_pred CHHHHHHHHHHhCCCCCC--CEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC-CCHHHHhhhcCEEEEccCCcCcCCH
Confidence 455555565543 34 69999999987766422 345555665543 4588899999999999994433433
Q ss_pred HHHH---HHHHcCCCEee--CCCChHHH
Q psy1304 142 AVVK---ACIEAKTHHVD--ITGEPYFM 164 (184)
Q Consensus 142 ~Vae---ACieAGthYVD--ltGE~~~~ 164 (184)
..++ .+++.|++|+| ++||.+|-
T Consensus 218 ~~vk~gavVIDvGin~~~gkl~GDvd~~ 245 (282)
T PRK14180 218 DMVKEGAVVIDVGINHVDGKIVGDVDFA 245 (282)
T ss_pred HHcCCCcEEEEecccccCCceeCCcCHH
Confidence 3333 35677777763 56676653
No 376
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=62.92 E-value=38 Score=28.26 Aligned_cols=72 Identities=13% Similarity=0.066 Sum_probs=50.1
Q ss_pred CEEEEeCCCHHHHHHHhh-cCcEEEeccccccccchHHHHHHHHcCCCEeeCCCC--h-----------HHHHHHHHHhH
Q psy1304 107 PIIIADLKNESSILIMAK-KCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGE--P-----------YFMEYMQYEYN 172 (184)
Q Consensus 107 ~~v~vDv~D~~sL~a~l~-~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltGE--~-----------~~~~~ii~~lh 172 (184)
-.+.+|-.+++.++++++ +.++++|..| +.. -..+++.+.+.|+.||=++-+ + +.+.++...+.
T Consensus 73 ~plSIDT~~~~v~~~aL~~g~~~ind~~~-~~~-~~~~~~l~a~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 150 (210)
T PF00809_consen 73 VPLSIDTFNPEVAEAALKAGADIINDISG-FED-DPEMLPLAAEYGAPVVLMHSDGNPKGMPETADYRLDIAEEIIEFLE 150 (210)
T ss_dssp SEEEEEESSHHHHHHHHHHTSSEEEETTT-TSS-STTHHHHHHHHTSEEEEESESSETTTTTSSHHHSHSHHHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHcCcceEEeccc-ccc-cchhhhhhhcCCCEEEEEecccccccccccchhhhhHHHHHHHHHH
Confidence 478889999999998876 6888888886 322 578999999999998655433 2 44555544444
Q ss_pred H---HHHHcCC
Q psy1304 173 T---RAQESEV 180 (184)
Q Consensus 173 e---~AkaaGV 180 (184)
+ .+.++|+
T Consensus 151 ~~i~~l~~~Gi 161 (210)
T PF00809_consen 151 ERIEALEKAGI 161 (210)
T ss_dssp HHHHHHHHTT-
T ss_pred HHHHHHHHcCC
Confidence 4 2455776
No 377
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=62.76 E-value=16 Score=33.95 Aligned_cols=78 Identities=13% Similarity=0.128 Sum_probs=46.4
Q ss_pred Cccccceeeeccc-----ccCCCC----CCCc----hhhhhhhCCCCCceeEEeeeecccccccCCCCCCEEEEeCCCHH
Q psy1304 51 QPFRGQTLSVQDK-----IRPGRG----SNPR----PSAYKADAPTSNLTRLGLLGARDCLYRENLIDIPIIIADLKNES 117 (184)
Q Consensus 51 ~~~~~~~~~~~~~-----~~~~~~----~~~r----~~~~La~~~~~~~~~iaLAGrr~~lg~~~~~~v~~v~vDv~D~~ 117 (184)
+.++||.+-|.+- |-|=|. |.-+ ++.+|+... .++.+..++..+. ....+..+|+.+.+
T Consensus 184 ~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~G----a~V~~v~~~~~~~----~~~~~~~~dv~~~~ 255 (399)
T PRK05579 184 KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRG----ADVTLVSGPVNLP----TPAGVKRIDVESAQ 255 (399)
T ss_pred cccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCC----CEEEEeCCCcccc----CCCCcEEEccCCHH
Confidence 4577887777662 222111 1222 444444444 5566665544321 11235678999988
Q ss_pred HHHHHhh----cCcEEEeccccc
Q psy1304 118 SILIMAK----KCRVILNCVGPY 136 (184)
Q Consensus 118 sL~a~l~----~~dVVIN~aGPf 136 (184)
++.+.+. +.|++|||||..
T Consensus 256 ~~~~~v~~~~~~~DilI~~Aav~ 278 (399)
T PRK05579 256 EMLDAVLAALPQADIFIMAAAVA 278 (399)
T ss_pred HHHHHHHHhcCCCCEEEEccccc
Confidence 8887774 589999999974
No 378
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=62.43 E-value=13 Score=33.53 Aligned_cols=48 Identities=6% Similarity=0.087 Sum_probs=36.9
Q ss_pred EEEEeCCCHHHHHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEeeC
Q psy1304 108 IIIADLKNESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDI 157 (184)
Q Consensus 108 ~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDl 157 (184)
.+..|++ ++.++++++++|+||+|...|.. ..-+-++|.+.|+.+|..
T Consensus 100 ~~~~~~~-~~~~~~~~~~~DlVid~~D~~~~-r~~in~~~~~~~ip~i~~ 147 (338)
T PRK12475 100 PVVTDVT-VEELEELVKEVDLIIDATDNFDT-RLLINDLSQKYNIPWIYG 147 (338)
T ss_pred EEeccCC-HHHHHHHhcCCCEEEEcCCCHHH-HHHHHHHHHHcCCCEEEE
Confidence 3444553 56788999999999999987743 356778999999997764
No 379
>PRK06392 homoserine dehydrogenase; Provisional
Probab=62.29 E-value=32 Score=31.10 Aligned_cols=56 Identities=13% Similarity=0.018 Sum_probs=40.5
Q ss_pred hcCcEEEeccccccccc---hHHHHHHHHcCCCEeeCCCChHHHHHHHHHhHHHHHHcCCee
Q psy1304 124 KKCRVILNCVGPYTWYG---EAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVQK 182 (184)
Q Consensus 124 ~~~dVVIN~aGPf~~~g---~~VaeACieAGthYVDltGE~~~~~~ii~~lhe~AkaaGV~I 182 (184)
.++|+||.|++.. ..| ....+.+++.|.|.|=.+ -.++.... .++.+.|+++|+.+
T Consensus 80 ~~~DVvVE~t~~~-~~g~~~~~~~~~aL~~G~hVVTaN-KgalA~~~-~eL~~lA~~~g~~~ 138 (326)
T PRK06392 80 IKPDVIVDVTPAS-KDGIREKNLYINAFEHGIDVVTAN-KSGLANHW-HDIMDSASKNRRII 138 (326)
T ss_pred CCCCEEEECCCCC-CcCchHHHHHHHHHHCCCEEEcCC-HHHHHhhH-HHHHHHHHHcCCeE
Confidence 4789999999644 333 456689999999988554 23444343 78899999988765
No 380
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=62.15 E-value=13 Score=31.78 Aligned_cols=42 Identities=17% Similarity=0.348 Sum_probs=34.3
Q ss_pred CHHHHHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEeeC
Q psy1304 115 NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDI 157 (184)
Q Consensus 115 D~~sL~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDl 157 (184)
+++.+.++++++|+||+|...+. .-..+-++|.+.++.+|+-
T Consensus 112 ~~~~~~~~~~~~DiVi~~~D~~~-~r~~ln~~~~~~~ip~v~~ 153 (245)
T PRK05690 112 DDDELAALIAGHDLVLDCTDNVA-TRNQLNRACFAAKKPLVSG 153 (245)
T ss_pred CHHHHHHHHhcCCEEEecCCCHH-HHHHHHHHHHHhCCEEEEe
Confidence 35567889999999999998664 3466889999999999873
No 381
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=61.91 E-value=3.1 Score=37.42 Aligned_cols=90 Identities=11% Similarity=0.239 Sum_probs=56.2
Q ss_pred CCchhhhhhhCC----CCCceeEEeeeecccccccCC-----C----CCCEEEEeCCCHHHHHHHhhcCcEEEecccccc
Q psy1304 71 NPRPSAYKADAP----TSNLTRLGLLGARDCLYRENL-----I----DIPIIIADLKNESSILIMAKKCRVILNCVGPYT 137 (184)
Q Consensus 71 ~~r~~~~La~~~----~~~~~~iaLAGrr~~lg~~~~-----~----~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~ 137 (184)
-|+.+-.|.+.+ .+ .++++-||+..-|.+.. . +...-.|.- ....|...++++|+||.++|=-.
T Consensus 140 Tp~avi~lL~~~~i~l~G--k~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs-~T~~l~~~~~~ADIvIsAvGkp~ 216 (297)
T PRK14167 140 TPHGIQKLLAAAGVDTEG--ADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHS-RTDDLAAKTRRADIVVAAAGVPE 216 (297)
T ss_pred CHHHHHHHHHHhCCCCCC--CEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCC-CCCCHHHHHhhCCEEEEccCCcC
Confidence 455555555443 45 79999999987665422 1 233334443 33468999999999999999443
Q ss_pred ccchHHHH---HHHHcCCCEee--------CCCChHH
Q psy1304 138 WYGEAVVK---ACIEAKTHHVD--------ITGEPYF 163 (184)
Q Consensus 138 ~~g~~Vae---ACieAGthYVD--------ltGE~~~ 163 (184)
......++ .+++.|++|+| ++||.+|
T Consensus 217 ~i~~~~ik~gaiVIDvGin~~~~~~~~g~kl~GDVd~ 253 (297)
T PRK14167 217 LIDGSMLSEGATVIDVGINRVDADTEKGYELVGDVEF 253 (297)
T ss_pred ccCHHHcCCCCEEEEccccccCcccccCCceeecCcH
Confidence 33333332 36777877762 5666665
No 382
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=61.90 E-value=29 Score=31.93 Aligned_cols=59 Identities=17% Similarity=0.160 Sum_probs=45.0
Q ss_pred HhhcCcEEEeccccccccch--HHHHHHHHcCCCEeeCCCChHHHHHHHHHhHHHHHHcCCee
Q psy1304 122 MAKKCRVILNCVGPYTWYGE--AVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVQK 182 (184)
Q Consensus 122 ~l~~~dVVIN~aGPf~~~g~--~VaeACieAGthYVDltGE~~~~~~ii~~lhe~AkaaGV~I 182 (184)
..+..|+||+++|+-...+. .....+++.|-|-|=-+= ....... .++.+.|+++|+.+
T Consensus 75 ~~~~~dvvve~~~~d~~~~~~~~~~~~al~~GkhVVTaNK-~~lA~~~-~el~~~A~~~g~~l 135 (333)
T COG0460 75 LDEDIDVVVELVGGDVEPAEPADLYLKALENGKHVVTANK-ALLALHY-HELREAAEKNGVKL 135 (333)
T ss_pred ccccCCEEEecCcccCCchhhHHHHHHHHHcCCeEECCCc-hHhHhhH-HHHHHHHHHhCCeE
Confidence 34568899999998677777 888899999999875533 3333443 68899999988765
No 383
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=61.89 E-value=3.6 Score=36.79 Aligned_cols=91 Identities=14% Similarity=0.214 Sum_probs=58.8
Q ss_pred CCchhhhhhhCC----CCCceeEEeeeecccccccCC-----CCCCEEEEeCCCHHHHHHHhhcCcEEEeccccccccch
Q psy1304 71 NPRPSAYKADAP----TSNLTRLGLLGARDCLYRENL-----IDIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYGE 141 (184)
Q Consensus 71 ~~r~~~~La~~~----~~~~~~iaLAGrr~~lg~~~~-----~~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~g~ 141 (184)
-|+.+-.|.+.+ .+ .++++-||+...|.+.. .+.....|... ...|...++++|+||.++|--.....
T Consensus 140 Tp~avi~ll~~~~i~l~G--k~vvViGrS~iVGkPla~lL~~~~AtVtichs~-T~nl~~~~~~ADIvI~AvGk~~~i~~ 216 (282)
T PRK14182 140 TPAGVMRMLDEARVDPKG--KRALVVGRSNIVGKPMAMMLLERHATVTIAHSR-TADLAGEVGRADILVAAIGKAELVKG 216 (282)
T ss_pred CHHHHHHHHHHhCCCCCC--CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC-CCCHHHHHhhCCEEEEecCCcCccCH
Confidence 345555555433 44 79999999987776422 33444555543 34588999999999999995444443
Q ss_pred HHHH---HHHHcCCCEe---eCCCChHHH
Q psy1304 142 AVVK---ACIEAKTHHV---DITGEPYFM 164 (184)
Q Consensus 142 ~Vae---ACieAGthYV---DltGE~~~~ 164 (184)
..++ .+++.|++++ .++||.+|-
T Consensus 217 ~~ik~gaiVIDvGin~~~~gkl~GDVd~~ 245 (282)
T PRK14182 217 AWVKEGAVVIDVGMNRLADGKLVGDVEFA 245 (282)
T ss_pred HHcCCCCEEEEeeceecCCCCeeCCCCHH
Confidence 3333 3677888885 267777653
No 384
>PRK07340 ornithine cyclodeaminase; Validated
Probab=61.44 E-value=0.75 Score=40.60 Aligned_cols=45 Identities=9% Similarity=-0.039 Sum_probs=32.1
Q ss_pred HHHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEeeCCCChHHHHH
Q psy1304 118 SILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEY 166 (184)
Q Consensus 118 sL~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltGE~~~~~~ 166 (184)
+++++++++|+||+|.. . ..|++.+.++.|+|-.=+..+.+..++
T Consensus 181 ~~~~av~~aDiVitaT~-s---~~Pl~~~~~~~g~hi~~iGs~~p~~~E 225 (304)
T PRK07340 181 DGEAIPEAVDLVVTATT-S---RTPVYPEAARAGRLVVAVGAFTPDMAE 225 (304)
T ss_pred CHHHHhhcCCEEEEccC-C---CCceeCccCCCCCEEEecCCCCCCccc
Confidence 35667889999999984 2 246667778999998877655444433
No 385
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=61.43 E-value=14 Score=31.71 Aligned_cols=41 Identities=10% Similarity=0.104 Sum_probs=29.5
Q ss_pred HHHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEeeCCCCh
Q psy1304 118 SILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEP 161 (184)
Q Consensus 118 sL~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltGE~ 161 (184)
.|.+.++++|+||.++|--.. .+-.--++-|+-.||+.-+.
T Consensus 119 ~l~~~~~~ADIVIsAvG~~~~---~i~~d~ik~GavVIDVGi~~ 159 (197)
T cd01079 119 MTLDCLSQSDVVITGVPSPNY---KVPTELLKDGAICINFASIK 159 (197)
T ss_pred HHHHHhhhCCEEEEccCCCCC---ccCHHHcCCCcEEEEcCCCc
Confidence 488999999999999984332 23344566788888886554
No 386
>KOG1371|consensus
Probab=61.41 E-value=18 Score=33.50 Aligned_cols=53 Identities=6% Similarity=0.103 Sum_probs=42.1
Q ss_pred CCCCCEEEEeCCCHHHHHHHhhc--CcEEEecccc------------ccccc----hHHHHHHHHcCCCEe
Q psy1304 103 LIDIPIIIADLKNESSILIMAKK--CRVILNCVGP------------YTWYG----EAVVKACIEAKTHHV 155 (184)
Q Consensus 103 ~~~v~~v~vDv~D~~sL~a~l~~--~dVVIN~aGP------------f~~~g----~~VaeACieAGthYV 155 (184)
-.++.+.+.|+.|.+.|+++++. .|-|++-++- |+..+ -.++++|.+.++.++
T Consensus 53 ~~~v~f~~~Dl~D~~~L~kvF~~~~fd~V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~~~~~ 123 (343)
T KOG1371|consen 53 GKSVFFVEGDLNDAEALEKLFSEVKFDAVMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHNVKAL 123 (343)
T ss_pred CCceEEEEeccCCHHHHHHHHhhcCCceEEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcCCceE
Confidence 36799999999999999999985 7899998763 22211 688899999997754
No 387
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=60.84 E-value=33 Score=30.71 Aligned_cols=70 Identities=11% Similarity=0.021 Sum_probs=49.2
Q ss_pred eeEEeeeeccccc-ccCCCCCCEEEEeCCCHHHHHHHhh-----cCcEEEeccccccccchHHHHHHHHcCCCEeeCCC
Q psy1304 87 TRLGLLGARDCLY-RENLIDIPIIIADLKNESSILIMAK-----KCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITG 159 (184)
Q Consensus 87 ~~iaLAGrr~~lg-~~~~~~v~~v~vDv~D~~sL~a~l~-----~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltG 159 (184)
.+|.+=-.+-+.. +......+++++|-.+++.+.++++ ..++.+-+.| .....=+...+++|++|+.++.
T Consensus 197 ~~I~VEv~tleea~eA~~~GaD~I~LDn~~~e~l~~av~~~~~~~~~i~leAsG---GIt~~ni~~ya~tGvD~Isvgs 272 (288)
T PRK07428 197 LTIEVETETLEQVQEALEYGADIIMLDNMPVDLMQQAVQLIRQQNPRVKIEASG---NITLETIRAVAETGVDYISSSA 272 (288)
T ss_pred CEEEEECCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcCCCeEEEEEC---CCCHHHHHHHHHcCCCEEEEch
Confidence 5666553332211 1122668999999999999999887 4678888887 3345556667799999999865
No 388
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=60.72 E-value=6.6 Score=34.58 Aligned_cols=57 Identities=5% Similarity=-0.132 Sum_probs=28.7
Q ss_pred hhhhhhhCCCCCceeEEeeeecccccccCCC----CCCEEEEeCCCHHHHHHHhhcCcEEEecc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRENLI----DIPIIIADLKNESSILIMAKKCRVILNCV 133 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~~~~----~v~~v~vDv~D~~sL~a~l~~~dVVIN~a 133 (184)
++.+|++... -+|.+..|..++.+.... ......+...+...+...+..+|+||||.
T Consensus 142 i~~aL~~~g~---~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaT 202 (283)
T PRK14027 142 VAYALVTHGV---QKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNAT 202 (283)
T ss_pred HHHHHHHCCC---CEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcC
Confidence 4445555443 367788776543321111 11111112223333455567899999996
No 389
>PRK07877 hypothetical protein; Provisional
Probab=60.61 E-value=24 Score=35.49 Aligned_cols=101 Identities=11% Similarity=-0.021 Sum_probs=62.5
Q ss_pred cCccccceeeecccccCCCCCCCchhhhhhhCCC-CCceeEEeeee--------cc------ccccc-----------CC
Q psy1304 50 SQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPT-SNLTRLGLLGA--------RD------CLYRE-----------NL 103 (184)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~-~~~~~iaLAGr--------r~------~lg~~-----------~~ 103 (184)
....+.+++.|.|- |=||+ ++.|||++.- + +|.|+-. ++ ..|.+ --
T Consensus 102 Q~~L~~~~V~IvG~---GlGs~--~a~~LaraGvvG---~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~in 173 (722)
T PRK07877 102 QERLGRLRIGVVGL---SVGHA--IAHTLAAEGLCG---ELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELD 173 (722)
T ss_pred HHHHhcCCEEEEEe---cHHHH--HHHHHHHccCCC---eEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHC
Confidence 34455666667664 33333 7888998874 4 4444431 11 11110 00
Q ss_pred CCCCEEEEeCC-CHHHHHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEeeCCC
Q psy1304 104 IDIPIIIADLK-NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITG 159 (184)
Q Consensus 104 ~~v~~v~vDv~-D~~sL~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltG 159 (184)
+.+++...+.. +++.+.++++++|+||+|..=| ..-.-+-++|.+.|+.+|--++
T Consensus 174 p~i~v~~~~~~i~~~n~~~~l~~~DlVvD~~D~~-~~R~~ln~~a~~~~iP~i~~~~ 229 (722)
T PRK07877 174 PYLPVEVFTDGLTEDNVDAFLDGLDVVVEECDSL-DVKVLLREAARARRIPVLMATS 229 (722)
T ss_pred CCCEEEEEeccCCHHHHHHHhcCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEcC
Confidence 33444444322 4788999999999999999744 3346777899999999877664
No 390
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=60.07 E-value=3.9 Score=36.63 Aligned_cols=89 Identities=13% Similarity=0.222 Sum_probs=58.0
Q ss_pred CCchhhhhhhCC----CCCceeEEeeeecccccccCC-----CCCCEEEEeCCCHHHHHHHhhcCcEEEeccccccccch
Q psy1304 71 NPRPSAYKADAP----TSNLTRLGLLGARDCLYRENL-----IDIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYGE 141 (184)
Q Consensus 71 ~~r~~~~La~~~----~~~~~~iaLAGrr~~lg~~~~-----~~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~g~ 141 (184)
-|+.+-.|.+.+ .+ .++++-||+..-|.+.. .+.....|.-.. ..|...++++|+||.++|--.....
T Consensus 138 Tp~avi~lL~~~~i~l~G--k~vvViGrS~iVGkPla~lL~~~~aTVtichs~T-~~l~~~~~~ADIvIsAvGkp~~i~~ 214 (287)
T PRK14173 138 TPAGVVRLLKHYGIPLAG--KEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT-QDLPAVTRRADVLVVAVGRPHLITP 214 (287)
T ss_pred CHHHHHHHHHHcCCCCCC--CEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC-CCHHHHHhhCCEEEEecCCcCccCH
Confidence 455555666443 24 79999999987665422 334444555443 3588999999999999995444333
Q ss_pred HHHH---HHHHcCCCEee-------CCCChH
Q psy1304 142 AVVK---ACIEAKTHHVD-------ITGEPY 162 (184)
Q Consensus 142 ~Vae---ACieAGthYVD-------ltGE~~ 162 (184)
..++ .+++.|++|++ ++||.+
T Consensus 215 ~~vk~GavVIDVGin~~~~~~gk~~l~GDVd 245 (287)
T PRK14173 215 EMVRPGAVVVDVGINRVGGNGGRDILTGDVH 245 (287)
T ss_pred HHcCCCCEEEEccCccccCCCCceeeecccc
Confidence 3333 36778888862 677665
No 391
>PLN02522 ATP citrate (pro-S)-lyase
Probab=59.99 E-value=20 Score=35.41 Aligned_cols=63 Identities=14% Similarity=0.006 Sum_probs=45.1
Q ss_pred HHHHHhh---cCcEEEeccccccccchHHHHHHHHcCCCEeeC-CCChHHHHHHHHHhHHHHHHcCCeee
Q psy1304 118 SILIMAK---KCRVILNCVGPYTWYGEAVVKACIEAKTHHVDI-TGEPYFMEYMQYEYNTRAQESEVQKC 183 (184)
Q Consensus 118 sL~a~l~---~~dVVIN~aGPf~~~g~~VaeACieAGthYVDl-tGE~~~~~~ii~~lhe~AkaaGV~Iv 183 (184)
++.++++ ++|+.|+.+.|..- .+.++|+|.+.|+..+=+ +.-.+- ... .++.+.|++.|+.|+
T Consensus 68 tv~eA~~~~~~~~~~vifvp~~~a-~da~lEa~~a~GIk~~VIiteGfpe-~d~-~~l~~~Ar~~g~rlI 134 (608)
T PLN02522 68 SIEAACKAHPTADVFINFASFRSA-AASSMEALKQPTIRVVAIIAEGVPE-SDT-KQLIAYARANNKVVI 134 (608)
T ss_pred hHHHHHHhCCCCcEEEEeCChHHh-HHHHHHHHhhCCCCEEEEECCCCCh-hhH-HHHHHHHHHcCCEEE
Confidence 4555554 57999999966544 589999999999996544 322221 233 688999999999886
No 392
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=59.50 E-value=21 Score=29.39 Aligned_cols=70 Identities=11% Similarity=0.075 Sum_probs=45.5
Q ss_pred eeEEeeeecccccccCC-CCCCEEEEeCCCHHHHHHHhh-----cCcEEEeccccccccchHHHHHHHHcCCCEeeCCC
Q psy1304 87 TRLGLLGARDCLYRENL-IDIPIIIADLKNESSILIMAK-----KCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITG 159 (184)
Q Consensus 87 ~~iaLAGrr~~lg~~~~-~~v~~v~vDv~D~~sL~a~l~-----~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltG 159 (184)
.+|.+=..+.+...+.. ..++.+++|-.+++.+.++++ ..++.|.+.|=. ...=++.-.++|++|+.++.
T Consensus 81 ~~I~VEv~~~ee~~ea~~~g~d~I~lD~~~~~~~~~~v~~l~~~~~~v~ie~SGGI---~~~ni~~ya~~gvD~isvg~ 156 (169)
T PF01729_consen 81 KKIEVEVENLEEAEEALEAGADIIMLDNMSPEDLKEAVEELRELNPRVKIEASGGI---TLENIAEYAKTGVDVISVGS 156 (169)
T ss_dssp SEEEEEESSHHHHHHHHHTT-SEEEEES-CHHHHHHHHHHHHHHTTTSEEEEESSS---STTTHHHHHHTT-SEEEECH
T ss_pred ceEEEEcCCHHHHHHHHHhCCCEEEecCcCHHHHHHHHHHHhhcCCcEEEEEECCC---CHHHHHHHHhcCCCEEEcCh
Confidence 55766654443222222 679999999999999999988 356888888832 33334444599999999854
No 393
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=59.40 E-value=4.5 Score=36.24 Aligned_cols=90 Identities=13% Similarity=0.203 Sum_probs=56.8
Q ss_pred CchhhhhhhCC----CCCceeEEeeeecccccccCC-----CCCCEEEEeCCCHHHHHHHhhcCcEEEeccccccccchH
Q psy1304 72 PRPSAYKADAP----TSNLTRLGLLGARDCLYRENL-----IDIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYGEA 142 (184)
Q Consensus 72 ~r~~~~La~~~----~~~~~~iaLAGrr~~lg~~~~-----~~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~g~~ 142 (184)
|+.+-.|.+.+ .+ .++++-||+..-|.+.. .+.....|...- ..|.+.++++|+||.++|--......
T Consensus 141 p~avi~lL~~~~i~l~G--k~vvVvGrS~iVGkPla~lL~~~~atVtichs~T-~~l~~~~~~ADIvI~AvG~~~~i~~~ 217 (284)
T PRK14170 141 PAGIIELIKSTGTQIEG--KRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT-KDLPQVAKEADILVVATGLAKFVKKD 217 (284)
T ss_pred HHHHHHHHHHhCCCCCC--CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC-CCHHHHHhhCCEEEEecCCcCccCHH
Confidence 45555555433 34 79999999987776422 344555565543 45899999999999999944333322
Q ss_pred HHH---HHHHcCCCEe---eCCCChHHH
Q psy1304 143 VVK---ACIEAKTHHV---DITGEPYFM 164 (184)
Q Consensus 143 Vae---ACieAGthYV---DltGE~~~~ 164 (184)
-++ .+++.|++++ -++||.+|-
T Consensus 218 ~vk~GavVIDvGin~~~~gkl~GDvdfe 245 (284)
T PRK14170 218 YIKPGAIVIDVGMDRDENNKLCGDVDFD 245 (284)
T ss_pred HcCCCCEEEEccCcccCCCCeecccchH
Confidence 222 3566777765 266676654
No 394
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=59.36 E-value=33 Score=30.58 Aligned_cols=55 Identities=24% Similarity=0.349 Sum_probs=0.0
Q ss_pred HHHHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEe-eCCC--ChHHHHHHHHHhHHHHHHcCCeee
Q psy1304 117 SSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHV-DITG--EPYFMEYMQYEYNTRAQESEVQKC 183 (184)
Q Consensus 117 ~sL~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYV-DltG--E~~~~~~ii~~lhe~AkaaGV~Iv 183 (184)
..|+++.+..++.|+-= .+...++++|+++|+++| |++| ++..... +++.|+.+|
T Consensus 80 pvI~~l~~~~~~~ISID----T~~~~va~~AL~~GadiINDI~g~~d~~~~~~--------~a~~~~~vV 137 (282)
T PRK11613 80 PVVEAIAQRFEVWISVD----TSKPEVIRESAKAGAHIINDIRSLSEPGALEA--------AAETGLPVC 137 (282)
T ss_pred HHHHHHHhcCCCeEEEE----CCCHHHHHHHHHcCCCEEEECCCCCCHHHHHH--------HHHcCCCEE
No 395
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=59.11 E-value=11 Score=34.33 Aligned_cols=51 Identities=16% Similarity=0.266 Sum_probs=38.1
Q ss_pred CEEEEeCCCHHHHHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEeeCCC
Q psy1304 107 PIIIADLKNESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITG 159 (184)
Q Consensus 107 ~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltG 159 (184)
++......|++.+.=--.++|+|+-|.|.|.. ...+...+++|+..||++.
T Consensus 77 ~i~v~~~~~p~~~~w~~~gvDiVie~tG~~~s--~~~a~~hl~aGak~ViiSa 127 (338)
T PLN02358 77 PVTVFGIRNPEDIPWGEAGADFVVESTGVFTD--KDKAAAHLKGGAKKVVISA 127 (338)
T ss_pred EEEEEEcCCcccCcccccCCCEEEEcccchhh--HHHHHHHHHCCCEEEEeCC
Confidence 45555666666554222589999999999844 4778889999999999984
No 396
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=58.85 E-value=17 Score=32.15 Aligned_cols=44 Identities=11% Similarity=0.178 Sum_probs=34.8
Q ss_pred CHHHHHHHhh-cCcEEEeccccccccchHHHHHHHHcCCCEeeCCC
Q psy1304 115 NESSILIMAK-KCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITG 159 (184)
Q Consensus 115 D~~sL~a~l~-~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltG 159 (184)
+++.+.+++. ++|+||+|.+.+.. -..+.+.|.+.++.++...|
T Consensus 110 ~~e~~~~ll~~~~D~VIdaiD~~~~-k~~L~~~c~~~~ip~I~~gG 154 (268)
T PRK15116 110 TPDNVAEYMSAGFSYVIDAIDSVRP-KAALIAYCRRNKIPLVTTGG 154 (268)
T ss_pred ChhhHHHHhcCCCCEEEEcCCCHHH-HHHHHHHHHHcCCCEEEECC
Confidence 4566777774 79999999997643 46799999999999887655
No 397
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=58.75 E-value=70 Score=27.49 Aligned_cols=52 Identities=10% Similarity=0.123 Sum_probs=35.1
Q ss_pred CCCEEEEeCCCHHHHHHHh----------hcCcEEEeccccccccchHHHHHHHHcCCCEee
Q psy1304 105 DIPIIIADLKNESSILIMA----------KKCRVILNCVGPYTWYGEAVVKACIEAKTHHVD 156 (184)
Q Consensus 105 ~v~~v~vDv~D~~sL~a~l----------~~~dVVIN~aGPf~~~g~~VaeACieAGthYVD 156 (184)
+.+++.+=+-+++.+..++ ..-.+||++.+-.......+.+.+.+.|++|+|
T Consensus 52 ~advVil~vp~~~~~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vd 113 (288)
T TIGR01692 52 GADRVITMLPAGQHVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMD 113 (288)
T ss_pred cCCEEEEeCCChHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 3455555455444444333 334689999876656667888899999999999
No 398
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=58.74 E-value=27 Score=27.52 Aligned_cols=54 Identities=7% Similarity=0.065 Sum_probs=40.2
Q ss_pred CCCCEEEEeCCCHHHHHHHhhc---------CcEEEeccccccccchHHHHHHHHcCCCEeeC
Q psy1304 104 IDIPIIIADLKNESSILIMAKK---------CRVILNCVGPYTWYGEAVVKACIEAKTHHVDI 157 (184)
Q Consensus 104 ~~v~~v~vDv~D~~sL~a~l~~---------~dVVIN~aGPf~~~g~~VaeACieAGthYVDl 157 (184)
.+.+++..-+.|.+++++++.+ -+++|+|.--.......+.+.+.+.|++|+|.
T Consensus 56 ~~~dvvi~~v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vda 118 (163)
T PF03446_consen 56 EQADVVILCVPDDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDA 118 (163)
T ss_dssp HHBSEEEE-SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEE
T ss_pred hcccceEeecccchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeee
Confidence 3457888888888888887665 56888887666666789999999999999994
No 399
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=58.64 E-value=11 Score=33.81 Aligned_cols=80 Identities=8% Similarity=0.150 Sum_probs=49.3
Q ss_pred CCchhhhhhhCC----CCCceeEEeeeecccccccCC-----CCCCEEEEeCCCHHHHHHHhhcCcEEEeccccccccch
Q psy1304 71 NPRPSAYKADAP----TSNLTRLGLLGARDCLYRENL-----IDIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYGE 141 (184)
Q Consensus 71 ~~r~~~~La~~~----~~~~~~iaLAGrr~~lg~~~~-----~~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~g~ 141 (184)
-|+.+-.|.+.+ .+ .++++-||+...|.+.. .+.....+.- ....+.++++++|+||.|+|=-.....
T Consensus 141 Tp~avi~lL~~~~i~l~G--k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s-~t~~l~~~~~~ADIVI~avg~~~~v~~ 217 (284)
T PRK14179 141 TPAGIMEMFREYNVELEG--KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHS-RTRNLAEVARKADILVVAIGRGHFVTK 217 (284)
T ss_pred CHHHHHHHHHHhCCCCCC--CEEEEECCCCcCcHHHHHHHHHCCCEEEEECC-CCCCHHHHHhhCCEEEEecCccccCCH
Confidence 445555555443 44 79999999887766533 3455555533 234688899999999999983333222
Q ss_pred HHHHHHHHcCCCEeeC
Q psy1304 142 AVVKACIEAKTHHVDI 157 (184)
Q Consensus 142 ~VaeACieAGthYVDl 157 (184)
.. ++.|+-.||+
T Consensus 218 ~~----ik~GavVIDv 229 (284)
T PRK14179 218 EF----VKEGAVVIDV 229 (284)
T ss_pred HH----ccCCcEEEEe
Confidence 22 4555555554
No 400
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=58.54 E-value=16 Score=32.98 Aligned_cols=41 Identities=20% Similarity=0.058 Sum_probs=32.5
Q ss_pred CHHHHHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEee
Q psy1304 115 NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVD 156 (184)
Q Consensus 115 D~~sL~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVD 156 (184)
+++.+.++++++|+||+|..-|.. -.-+-++|.+.++.+|.
T Consensus 108 ~~~~~~~~~~~~DvVvd~~d~~~~-r~~~n~~c~~~~ip~v~ 148 (355)
T PRK05597 108 TWSNALDELRDADVILDGSDNFDT-RHLASWAAARLGIPHVW 148 (355)
T ss_pred CHHHHHHHHhCCCEEEECCCCHHH-HHHHHHHHHHcCCCEEE
Confidence 345677889999999999986533 24678899999999875
No 401
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=58.23 E-value=9.7 Score=33.53 Aligned_cols=95 Identities=12% Similarity=0.101 Sum_probs=49.2
Q ss_pred cccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccccCCCCCCEEEEeCCCHHHHHHHhhcCcEEEec
Q psy1304 53 FRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRENLIDIPIIIADLKNESSILIMAKKCRVILNC 132 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~~~~~v~~v~vDv~D~~sL~a~l~~~dVVIN~ 132 (184)
+.|+++.|-|-=.-|+. ++.+|.. ... -+|.+.+|+.+...+........ +.+.+++.+.+.++|+||+|
T Consensus 176 l~~~~V~ViGaG~iG~~----~a~~L~~-~g~--~~V~v~~r~~~ra~~la~~~g~~---~~~~~~~~~~l~~aDvVi~a 245 (311)
T cd05213 176 LKGKKVLVIGAGEMGEL----AAKHLAA-KGV--AEITIANRTYERAEELAKELGGN---AVPLDELLELLNEADVVISA 245 (311)
T ss_pred ccCCEEEEECcHHHHHH----HHHHHHH-cCC--CEEEEEeCCHHHHHHHHHHcCCe---EEeHHHHHHHHhcCCEEEEC
Confidence 56777777662222222 3344433 222 46777777643321111112211 22335677888999999999
Q ss_pred cccccccchHHHHHHHHc----CCCEeeCCC
Q psy1304 133 VGPYTWYGEAVVKACIEA----KTHHVDITG 159 (184)
Q Consensus 133 aGPf~~~g~~VaeACieA----GthYVDltG 159 (184)
.|.-.. ..+++..++. +.-.+|++-
T Consensus 246 t~~~~~--~~~~~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 246 TGAPHY--AKIVERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred CCCCch--HHHHHHHHhhCCCCCeEEEEeCC
Confidence 975433 2333333322 344788873
No 402
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=58.14 E-value=13 Score=33.50 Aligned_cols=35 Identities=11% Similarity=0.131 Sum_probs=29.7
Q ss_pred hcCcEEEeccccccccchHHHHHHHHcCCCEeeCCCC
Q psy1304 124 KKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGE 160 (184)
Q Consensus 124 ~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltGE 160 (184)
.+.|+|+.|.|++.. ...+..|+++|+|-+|.+.-
T Consensus 69 ~dIDiVf~AT~a~~H--~e~a~~a~eaGk~VID~sPA 103 (302)
T PRK08300 69 DDIDIVFDATSAGAH--VRHAAKLREAGIRAIDLTPA 103 (302)
T ss_pred CCCCEEEECCCHHHH--HHHHHHHHHcCCeEEECCcc
Confidence 568999999987654 48889999999999999853
No 403
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=58.03 E-value=34 Score=30.46 Aligned_cols=61 Identities=13% Similarity=0.042 Sum_probs=43.0
Q ss_pred HHHHHhhc--CcEEEeccccccccchHHHHHHHHcCCCEeeC--CCChHHHHHHHHHhHHHHHHcCCeee
Q psy1304 118 SILIMAKK--CRVILNCVGPYTWYGEAVVKACIEAKTHHVDI--TGEPYFMEYMQYEYNTRAQESEVQKC 183 (184)
Q Consensus 118 sL~a~l~~--~dVVIN~aGPf~~~g~~VaeACieAGthYVDl--tGE~~~~~~ii~~lhe~AkaaGV~Iv 183 (184)
++.++-+. .|++|-++.+..- ..+++.|.+.|+..+=+ .|-.+. .+.++-+.|++.|+.++
T Consensus 54 sv~dlp~~~~~Dlavi~vpa~~v--~~~l~e~~~~Gvk~avIis~Gf~e~---~~~~l~~~a~~~giril 118 (286)
T TIGR01019 54 SVKEAVEETGANASVIFVPAPFA--ADAIFEAIDAGIELIVCITEGIPVH---DMLKVKRYMEESGTRLI 118 (286)
T ss_pred CHHHHhhccCCCEEEEecCHHHH--HHHHHHHHHCCCCEEEEECCCCCHH---HHHHHHHHHHHcCCEEE
Confidence 45555555 7999999964433 58899999999995433 333332 23578889999999886
No 404
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=57.56 E-value=6.7 Score=34.53 Aligned_cols=59 Identities=14% Similarity=0.236 Sum_probs=37.8
Q ss_pred HHHHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEeeCCCChHHHHHHHHHhHHHHHHcCCeee
Q psy1304 117 SSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVQKC 183 (184)
Q Consensus 117 ~sL~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltGE~~~~~~ii~~lhe~AkaaGV~Iv 183 (184)
+++.+.++++|+||||+++.. .....+ ..+..|.-.+|+.-++.-+. + +.|++.|+.++
T Consensus 202 ~~l~~~l~~aDiVI~t~p~~~-i~~~~l-~~~~~g~vIIDla~~pggtd-----~-~~a~~~Gv~~~ 260 (296)
T PRK08306 202 SELAEEVGKIDIIFNTIPALV-LTKEVL-SKMPPEALIIDLASKPGGTD-----F-EYAEKRGIKAL 260 (296)
T ss_pred HHHHHHhCCCCEEEECCChhh-hhHHHH-HcCCCCcEEEEEccCCCCcC-----e-eehhhCCeEEE
Confidence 467788999999999995432 222222 23456788999986653321 2 35677777654
No 405
>PTZ00325 malate dehydrogenase; Provisional
Probab=57.51 E-value=20 Score=32.34 Aligned_cols=77 Identities=14% Similarity=0.085 Sum_probs=46.7
Q ss_pred eEEeeeecccccccCC---CCCCEEEEeCCCHHHHHHHhhcCcEEEeccccccccc--------------hHHHHHHHHc
Q psy1304 88 RLGLLGARDCLYRENL---IDIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYG--------------EAVVKACIEA 150 (184)
Q Consensus 88 ~iaLAGrr~~lg~~~~---~~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~g--------------~~VaeACieA 150 (184)
.|.|-.+....+.... ....+...+..|+.++.+.++++|+||.|+|+-...+ ..++++..+.
T Consensus 36 elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~ 115 (321)
T PTZ00325 36 ELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASS 115 (321)
T ss_pred EEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667666322322111 1224556677776667889999999999999865533 3556666777
Q ss_pred CCC--EeeCCCChHHH
Q psy1304 151 KTH--HVDITGEPYFM 164 (184)
Q Consensus 151 Gth--YVDltGE~~~~ 164 (184)
|.+ ++=++.-.+.+
T Consensus 116 ~~~~iviv~SNPvdv~ 131 (321)
T PTZ00325 116 APKAIVGIVSNPVNST 131 (321)
T ss_pred CCCeEEEEecCcHHHH
Confidence 776 44444444433
No 406
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=57.18 E-value=24 Score=26.87 Aligned_cols=40 Identities=10% Similarity=0.068 Sum_probs=29.9
Q ss_pred HHHHHHhhc--CcEEEecccc-ccc----cchHHHHHHHHcCCCEee
Q psy1304 117 SSILIMAKK--CRVILNCVGP-YTW----YGEAVVKACIEAKTHHVD 156 (184)
Q Consensus 117 ~sL~a~l~~--~dVVIN~aGP-f~~----~g~~VaeACieAGthYVD 156 (184)
..+.+++.. .|+|||+-.| -.. .+..+-++|++.++.|+=
T Consensus 60 ~~i~~~i~~g~i~~VInt~~~~~~~~~~~dg~~iRr~a~~~~Ip~~T 106 (115)
T cd01422 60 QQIGALIAEGEIDAVIFFRDPLTAQPHEPDVKALLRLCDVYNIPLAT 106 (115)
T ss_pred hHHHHHHHcCceeEEEEcCCCCCCCcccccHHHHHHHHHHcCCCEEE
Confidence 445666653 8999999876 322 368899999999999873
No 407
>KOG1201|consensus
Probab=57.13 E-value=8.8 Score=34.88 Aligned_cols=93 Identities=16% Similarity=0.193 Sum_probs=56.0
Q ss_pred cccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccccCC------CCCCEEEEeCCCHHHHHHHhh--
Q psy1304 53 FRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRENL------IDIPIIIADLKNESSILIMAK-- 124 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~~~------~~v~~v~vDv~D~~sL~a~l~-- 124 (184)
+.||+.-+.| -|.|--.-++-.+|+.. .++++...+..-..+-. +.+...+||+.|++++.++.+
T Consensus 36 v~g~~vLITG---gg~GlGr~ialefa~rg----~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~V 108 (300)
T KOG1201|consen 36 VSGEIVLITG---GGSGLGRLIALEFAKRG----AKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKV 108 (300)
T ss_pred ccCCEEEEeC---CCchHHHHHHHHHHHhC----CeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHH
Confidence 4556555554 23441112444455544 46778876553222111 457899999999999988776
Q ss_pred -----cCcEEEeccccccc-----cchHHHHHHHHcCC
Q psy1304 125 -----KCRVILNCVGPYTW-----YGEAVVKACIEAKT 152 (184)
Q Consensus 125 -----~~dVVIN~aGPf~~-----~g~~VaeACieAGt 152 (184)
..+++||-||--.. ..+..++-|.+-.+
T Consensus 109 k~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~ 146 (300)
T KOG1201|consen 109 KKEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNT 146 (300)
T ss_pred HHhcCCceEEEeccccccCCCccCCCHHHHHHHHHHhh
Confidence 47999999994432 23555666555443
No 408
>PRK09620 hypothetical protein; Provisional
Probab=57.02 E-value=18 Score=30.88 Aligned_cols=70 Identities=6% Similarity=-0.074 Sum_probs=39.5
Q ss_pred cccCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccccCCCCCC--EEEEeCCCHHHHHHHhh-
Q psy1304 48 GESQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRENLIDIP--IIIADLKNESSILIMAK- 124 (184)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~~~~~v~--~v~vDv~D~~sL~a~l~- 124 (184)
--|++|.|.- ++.+|.+.... +-+ +.|-...........+. .+..|.+..+.+.++++
T Consensus 25 N~SSGfiGs~----------------LA~~L~~~Ga~--V~l-i~g~~~~~~~~~~~~~~~~~V~s~~d~~~~l~~~~~~ 85 (229)
T PRK09620 25 NMAKGTIGRI----------------IAEELISKGAH--VIY-LHGYFAEKPNDINNQLELHPFEGIIDLQDKMKSIITH 85 (229)
T ss_pred CCCcCHHHHH----------------HHHHHHHCCCe--EEE-EeCCCcCCCcccCCceeEEEEecHHHHHHHHHHHhcc
Confidence 4578888877 67777776544 321 22221111110011222 34444455578888885
Q ss_pred -cCcEEEeccccc
Q psy1304 125 -KCRVILNCVGPY 136 (184)
Q Consensus 125 -~~dVVIN~aGPf 136 (184)
++|+||++|.+-
T Consensus 86 ~~~D~VIH~AAvs 98 (229)
T PRK09620 86 EKVDAVIMAAAGS 98 (229)
T ss_pred cCCCEEEECcccc
Confidence 689999999874
No 409
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=56.95 E-value=17 Score=32.62 Aligned_cols=89 Identities=13% Similarity=0.085 Sum_probs=51.9
Q ss_pred hCCCCCceeEEeeeecccccccCCCCCCEEEEeCCCHHHHHHHhhc--CcEEEeccccccccchHHHHHHHHcCCCEeeC
Q psy1304 80 DAPTSNLTRLGLLGARDCLYRENLIDIPIIIADLKNESSILIMAKK--CRVILNCVGPYTWYGEAVVKACIEAKTHHVDI 157 (184)
Q Consensus 80 ~~~~~~~~~iaLAGrr~~lg~~~~~~v~~v~vDv~D~~sL~a~l~~--~dVVIN~aGPf~~~g~~VaeACieAGthYVDl 157 (184)
+.|+.| | .||++-..+.+....+++ -.++.++-.. .|++|-++.+.. -..+++.|.+.|++.+=+
T Consensus 33 ~~ygt~---~-~~gV~p~~~~~~i~G~~~-------y~sv~dlp~~~~~DlAvI~vPa~~--v~~al~e~~~~Gvk~~vI 99 (300)
T PLN00125 33 IEYGTK---M-VGGVTPKKGGTEHLGLPV-------FNTVAEAKAETKANASVIYVPPPF--AAAAILEAMEAELDLVVC 99 (300)
T ss_pred HHhCCc---E-EEEECCCCCCceEcCeec-------cCCHHHHhhccCCCEEEEecCHHH--HHHHHHHHHHcCCCEEEE
Confidence 566442 2 567766543222222321 1234445444 799999995443 358889999999995443
Q ss_pred --CCChHHHHHHHHHhHHHHHHcCCeee
Q psy1304 158 --TGEPYFMEYMQYEYNTRAQESEVQKC 183 (184)
Q Consensus 158 --tGE~~~~~~ii~~lhe~AkaaGV~Iv 183 (184)
.|-.+. .++..+.+.|++.|+.++
T Consensus 100 isaGf~e~--g~~~~~~~~ar~~girvi 125 (300)
T PLN00125 100 ITEGIPQH--DMVRVKAALNRQSKTRLI 125 (300)
T ss_pred ECCCCCcc--cHHHHHHHHHhhcCCEEE
Confidence 222221 133455667899998775
No 410
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=56.58 E-value=22 Score=31.72 Aligned_cols=61 Identities=13% Similarity=0.109 Sum_probs=43.3
Q ss_pred HHHHHhhc--CcEEEeccccccccchHHHHHHHHcCCCEeeC--CCChHHHHHHHHHhHHHHHHcCCeee
Q psy1304 118 SILIMAKK--CRVILNCVGPYTWYGEAVVKACIEAKTHHVDI--TGEPYFMEYMQYEYNTRAQESEVQKC 183 (184)
Q Consensus 118 sL~a~l~~--~dVVIN~aGPf~~~g~~VaeACieAGthYVDl--tGE~~~~~~ii~~lhe~AkaaGV~Iv 183 (184)
++.++-.. .|++|-++.|-.- ..+++.|.+.|++.+=+ .|-. .++. .++-+.|++.|+.++
T Consensus 56 sv~dlp~~~~~DlAvi~vp~~~v--~~~l~e~~~~gvk~avI~s~Gf~--~~~~-~~l~~~a~~~girvl 120 (291)
T PRK05678 56 TVAEAVEATGANASVIYVPPPFA--ADAILEAIDAGIDLIVCITEGIP--VLDM-LEVKAYLERKKTRLI 120 (291)
T ss_pred CHHHHhhccCCCEEEEEcCHHHH--HHHHHHHHHCCCCEEEEECCCCC--HHHH-HHHHHHHHHcCCEEE
Confidence 45555565 8999999965433 58899999999996433 3322 2222 478899999999886
No 411
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=56.37 E-value=28 Score=30.89 Aligned_cols=74 Identities=12% Similarity=0.083 Sum_probs=51.4
Q ss_pred CCCCCceeEEeeeecccccccC-CCCCCEEEEeCCCHHHHHHHhhcC--cEEEeccccccccchHHHHHHHHcCCCEeeC
Q psy1304 81 APTSNLTRLGLLGARDCLYREN-LIDIPIIIADLKNESSILIMAKKC--RVILNCVGPYTWYGEAVVKACIEAKTHHVDI 157 (184)
Q Consensus 81 ~~~~~~~~iaLAGrr~~lg~~~-~~~v~~v~vDv~D~~sL~a~l~~~--dVVIN~aGPf~~~g~~VaeACieAGthYVDl 157 (184)
.+|+ .+|.+-..+.+.-.++ ...++++.+|...++.+.++++.. ++.+-+.| .....-++..+++|++++-+
T Consensus 186 ~~~~--~~I~VEv~tleea~eA~~~gaD~I~LD~~~~e~l~~~v~~~~~~i~leAsG---GIt~~ni~~~a~tGvD~Isv 260 (277)
T PRK05742 186 IAPG--KPVEVEVESLDELRQALAAGADIVMLDELSLDDMREAVRLTAGRAKLEASG---GINESTLRVIAETGVDYISI 260 (277)
T ss_pred hCCC--CeEEEEeCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhCCCCcEEEEC---CCCHHHHHHHHHcCCCEEEE
Confidence 3555 6677665443221111 256899999999999999888744 67777777 33455667788999999988
Q ss_pred CC
Q psy1304 158 TG 159 (184)
Q Consensus 158 tG 159 (184)
+.
T Consensus 261 g~ 262 (277)
T PRK05742 261 GA 262 (277)
T ss_pred Ch
Confidence 54
No 412
>KOG3923|consensus
Probab=56.00 E-value=10 Score=35.05 Aligned_cols=33 Identities=15% Similarity=0.238 Sum_probs=25.5
Q ss_pred CCCCEEEEeCCCHHHHHHHhhcCcEEEeccccccc
Q psy1304 104 IDIPIIIADLKNESSILIMAKKCRVILNCVGPYTW 138 (184)
Q Consensus 104 ~~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~ 138 (184)
..+++++=-++|-+++.+ ++.||||||+|-+..
T Consensus 164 ~Gvef~~r~v~~l~E~~~--~~~DVivNCtGL~a~ 196 (342)
T KOG3923|consen 164 NGVEFVQRRVESLEEVAR--PEYDVIVNCTGLGAG 196 (342)
T ss_pred cCcEEEEeeeccHHHhcc--CCCcEEEECCccccc
Confidence 457788888877555555 899999999997754
No 413
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=55.81 E-value=11 Score=34.59 Aligned_cols=97 Identities=10% Similarity=0.062 Sum_probs=49.9
Q ss_pred cccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccccCCCCCCEEEEeCCCHHHHHHHhhcCcEEEec
Q psy1304 53 FRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRENLIDIPIIIADLKNESSILIMAKKCRVILNC 132 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~~~~~v~~v~vDv~D~~sL~a~l~~~dVVIN~ 132 (184)
+.|+++.|-|-=.-|+. ++.+|..... -+|.+..|+............. ++.+.+++.+.+.++|+||+|
T Consensus 180 ~~~~~vlViGaG~iG~~----~a~~L~~~G~---~~V~v~~r~~~ra~~la~~~g~---~~~~~~~~~~~l~~aDvVI~a 249 (423)
T PRK00045 180 LSGKKVLVIGAGEMGEL----VAKHLAEKGV---RKITVANRTLERAEELAEEFGG---EAIPLDELPEALAEADIVISS 249 (423)
T ss_pred ccCCEEEEECchHHHHH----HHHHHHHCCC---CeEEEEeCCHHHHHHHHHHcCC---cEeeHHHHHHHhccCCEEEEC
Confidence 67788887763222222 3444444332 2677777764332111111111 122335677888999999999
Q ss_pred cccc-cccchHHHHHHHH----cCCCEeeCCC
Q psy1304 133 VGPY-TWYGEAVVKACIE----AKTHHVDITG 159 (184)
Q Consensus 133 aGPf-~~~g~~VaeACie----AGthYVDltG 159 (184)
.|-- .......++.+.. -+.-.+|++.
T Consensus 250 T~s~~~~i~~~~l~~~~~~~~~~~~vviDla~ 281 (423)
T PRK00045 250 TGAPHPIIGKGMVERALKARRHRPLLLVDLAV 281 (423)
T ss_pred CCCCCcEEcHHHHHHHHhhccCCCeEEEEeCC
Confidence 8722 2223333444332 1244778764
No 414
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=55.50 E-value=9.5 Score=31.24 Aligned_cols=76 Identities=13% Similarity=0.273 Sum_probs=42.1
Q ss_pred eeEEeeeecccccccCC-----CCCCEEEEeCCCHHHHHHHhhcCcEEEeccccccccchHHHH---HHHHcCCCEe---
Q psy1304 87 TRLGLLGARDCLYRENL-----IDIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYGEAVVK---ACIEAKTHHV--- 155 (184)
Q Consensus 87 ~~iaLAGrr~~lg~~~~-----~~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~g~~Vae---ACieAGthYV--- 155 (184)
.++.+.||+...|.+.. .+.....|+... ..+.+.++++|+||.++|--......-++ ..++.|++++
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T-~~l~~~~~~ADIVVsa~G~~~~i~~~~ik~gavVIDvG~~~~~~~ 115 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT-KNLQEITRRADIVVSAVGKPNLIKADWIKPGAVVIDVGINYVPGD 115 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS-SSHHHHHTTSSEEEE-SSSTT-B-GGGS-TTEEEEE--CEEETTT
T ss_pred CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC-CcccceeeeccEEeeeeccccccccccccCCcEEEecCCcccccc
Confidence 67888888776655321 445555666654 56889999999999999944332221111 3566677777
Q ss_pred -eCCCChHH
Q psy1304 156 -DITGEPYF 163 (184)
Q Consensus 156 -DltGE~~~ 163 (184)
-++||.+|
T Consensus 116 ~~~~GDv~~ 124 (160)
T PF02882_consen 116 GKLVGDVDF 124 (160)
T ss_dssp TEEEESB-H
T ss_pred ceeeecccH
Confidence 35566655
No 415
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=55.43 E-value=24 Score=31.89 Aligned_cols=89 Identities=11% Similarity=0.171 Sum_probs=53.7
Q ss_pred cccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecc--cccc--cCC--CCCCEEEEeCCCHHHHHHHhhcC
Q psy1304 53 FRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARD--CLYR--ENL--IDIPIIIADLKNESSILIMAKKC 126 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~--~lg~--~~~--~~v~~v~vDv~D~~sL~a~l~~~ 126 (184)
++||+..|-|--+-|. .++.+|++..-. +.+..++. .... ... ..+.++..|..| ....++
T Consensus 3 ~~~k~v~iiG~g~~G~----~~A~~l~~~G~~----V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~ 69 (450)
T PRK14106 3 LKGKKVLVVGAGVSGL----ALAKFLKKLGAK----VILTDEKEEDQLKEALEELGELGIELVLGEYPE-----EFLEGV 69 (450)
T ss_pred cCCCEEEEECCCHHHH----HHHHHHHHCCCE----EEEEeCCchHHHHHHHHHHHhcCCEEEeCCcch-----hHhhcC
Confidence 4667777766333333 377777776643 44444432 1100 001 235566666654 345789
Q ss_pred cEEEeccccccccchHHHHHHHHcCCCEee
Q psy1304 127 RVILNCVGPYTWYGEAVVKACIEAKTHHVD 156 (184)
Q Consensus 127 dVVIN~aGPf~~~g~~VaeACieAGthYVD 156 (184)
|+||+++|.. ...+.+.+|.+.|+..+.
T Consensus 70 d~vv~~~g~~--~~~~~~~~a~~~~i~~~~ 97 (450)
T PRK14106 70 DLVVVSPGVP--LDSPPVVQAHKKGIEVIG 97 (450)
T ss_pred CEEEECCCCC--CCCHHHHHHHHCCCcEEe
Confidence 9999999964 345788999998987654
No 416
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=55.07 E-value=5.7 Score=36.98 Aligned_cols=74 Identities=11% Similarity=-0.001 Sum_probs=43.6
Q ss_pred cccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccccCCCCCCEEEEeCCCHHHHHHHhhcCcEEEec
Q psy1304 53 FRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRENLIDIPIIIADLKNESSILIMAKKCRVILNC 132 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~~~~~v~~v~vDv~D~~sL~a~l~~~dVVIN~ 132 (184)
+.|+++-|-|-=--||. ++.+|+...+. +|.+..|+.+....-...+.- ..+..-+++...+.++|+||||
T Consensus 179 l~~kkvlviGaG~~a~~----va~~L~~~g~~---~I~V~nRt~~ra~~La~~~~~--~~~~~~~~l~~~l~~aDiVI~a 249 (414)
T PRK13940 179 ISSKNVLIIGAGQTGEL----LFRHVTALAPK---QIMLANRTIEKAQKITSAFRN--ASAHYLSELPQLIKKADIIIAA 249 (414)
T ss_pred ccCCEEEEEcCcHHHHH----HHHHHHHcCCC---EEEEECCCHHHHHHHHHHhcC--CeEecHHHHHHHhccCCEEEEC
Confidence 56777777663333333 56666655433 688888875543221121210 1122335678899999999999
Q ss_pred ccc
Q psy1304 133 VGP 135 (184)
Q Consensus 133 aGP 135 (184)
.+.
T Consensus 250 T~a 252 (414)
T PRK13940 250 VNV 252 (414)
T ss_pred cCC
Confidence 974
No 417
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=54.40 E-value=49 Score=29.82 Aligned_cols=70 Identities=13% Similarity=0.015 Sum_probs=49.8
Q ss_pred eeEEeeeecccccccCC-CCCCEEEEeCCCHHHHHHHhhc--CcEEEeccccccccchHHHHHHHHcCCCEeeCCC
Q psy1304 87 TRLGLLGARDCLYRENL-IDIPIIIADLKNESSILIMAKK--CRVILNCVGPYTWYGEAVVKACIEAKTHHVDITG 159 (184)
Q Consensus 87 ~~iaLAGrr~~lg~~~~-~~v~~v~vDv~D~~sL~a~l~~--~dVVIN~aGPf~~~g~~VaeACieAGthYVDltG 159 (184)
.||.+=..+-+...+.+ ...+.+++|-.+++++.++++- ..+.+.+.| .....-++.=+++|++|+.++-
T Consensus 198 ~kIeVEv~tleea~~a~~agaDiImLDnmspe~l~~av~~~~~~~~leaSG---GI~~~ni~~yA~tGVD~Is~ga 270 (290)
T PRK06559 198 KMVEVEVESLAAAEEAAAAGADIIMLDNMSLEQIEQAITLIAGRSRIECSG---NIDMTTISRFRGLAIDYVSSGS 270 (290)
T ss_pred CeEEEECCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhcCceEEEEEC---CCCHHHHHHHHhcCCCEEEeCc
Confidence 66766644332222122 5689999999999999998873 467888887 4445666667899999999854
No 418
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=54.35 E-value=21 Score=32.62 Aligned_cols=41 Identities=17% Similarity=0.080 Sum_probs=32.5
Q ss_pred CHHHHHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEee
Q psy1304 115 NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVD 156 (184)
Q Consensus 115 D~~sL~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVD 156 (184)
+.+.+.++++++|+||+|..-+ ..-.-+-++|.+.|+.||.
T Consensus 122 ~~~~~~~~~~~~D~Vvd~~d~~-~~r~~ln~~~~~~~~p~v~ 162 (392)
T PRK07878 122 DPSNAVELFSQYDLILDGTDNF-ATRYLVNDAAVLAGKPYVW 162 (392)
T ss_pred ChhHHHHHHhcCCEEEECCCCH-HHHHHHHHHHHHcCCCEEE
Confidence 3456778999999999999755 3335678999999999876
No 419
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=53.69 E-value=22 Score=28.78 Aligned_cols=41 Identities=5% Similarity=0.097 Sum_probs=30.8
Q ss_pred HHHHHHhhcCcEEEeccccccccchHHHHHHHHc-CCCEeeCC
Q psy1304 117 SSILIMAKKCRVILNCVGPYTWYGEAVVKACIEA-KTHHVDIT 158 (184)
Q Consensus 117 ~sL~a~l~~~dVVIN~aGPf~~~g~~VaeACieA-GthYVDlt 158 (184)
+.+.++++++|+||.|..-+... ..+.+.|.+. ++.+|--+
T Consensus 80 ~~~~~~l~~~DlVi~~~d~~~~r-~~i~~~~~~~~~ip~i~~~ 121 (174)
T cd01487 80 NNLEGLFGDCDIVVEAFDNAETK-AMLAESLLGNKNKPVVCAS 121 (174)
T ss_pred hhHHHHhcCCCEEEECCCCHHHH-HHHHHHHHHHCCCCEEEEe
Confidence 56788899999999998655332 4577888887 88877543
No 420
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=53.21 E-value=19 Score=32.01 Aligned_cols=35 Identities=9% Similarity=0.128 Sum_probs=29.3
Q ss_pred hcCcEEEeccccccccchHHHHHHHHcCCCEeeCCCC
Q psy1304 124 KKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGE 160 (184)
Q Consensus 124 ~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltGE 160 (184)
.+.|+|+.|.+++.. ...+..|+++|+|-+|.+.-
T Consensus 63 ~dIDaV~iaTp~~~H--~e~a~~al~aGk~VIdekPa 97 (285)
T TIGR03215 63 PDIDIVFDATSAKAH--ARHARLLAELGKIVIDLTPA 97 (285)
T ss_pred CCCCEEEECCCcHHH--HHHHHHHHHcCCEEEECCcc
Confidence 368999999987755 47889999999999998753
No 421
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=52.94 E-value=18 Score=32.68 Aligned_cols=81 Identities=7% Similarity=0.180 Sum_probs=50.0
Q ss_pred CCchhhhhhhCC----CCCceeEEeeeecccccccCC-----CCCCEEEEeCCCHHHHHHHhhcCcEEEeccccccccch
Q psy1304 71 NPRPSAYKADAP----TSNLTRLGLLGARDCLYRENL-----IDIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYGE 141 (184)
Q Consensus 71 ~~r~~~~La~~~----~~~~~~iaLAGrr~~lg~~~~-----~~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~g~ 141 (184)
-|+.+-.|.+.+ .+ .+|++-||....|.+.. .+.....++-.. .++.++++++|+||.|+|=-.....
T Consensus 142 Tp~aii~lL~~~~i~l~G--k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t-~~l~e~~~~ADIVIsavg~~~~v~~ 218 (301)
T PRK14194 142 TPSGCLRLLEDTCGDLTG--KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS-TDAKALCRQADIVVAAVGRPRLIDA 218 (301)
T ss_pred cHHHHHHHHHHhCCCCCC--CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC-CCHHHHHhcCCEEEEecCChhcccH
Confidence 455555565443 24 68999998766555432 445666665433 4688999999999999973222211
Q ss_pred HHHHHHHHcCCCEeeCC
Q psy1304 142 AVVKACIEAKTHHVDIT 158 (184)
Q Consensus 142 ~VaeACieAGthYVDlt 158 (184)
. -++.|+-.||++
T Consensus 219 ~----~ik~GaiVIDvg 231 (301)
T PRK14194 219 D----WLKPGAVVIDVG 231 (301)
T ss_pred h----hccCCcEEEEec
Confidence 1 155555566654
No 422
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=52.94 E-value=24 Score=29.61 Aligned_cols=43 Identities=19% Similarity=0.317 Sum_probs=33.2
Q ss_pred HHHHHHHhhcCcEEEeccccccccchHHHHHHHHc-CCCEeeCCC
Q psy1304 116 ESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEA-KTHHVDITG 159 (184)
Q Consensus 116 ~~sL~a~l~~~dVVIN~aGPf~~~g~~VaeACieA-GthYVDltG 159 (184)
.+.+.++++++|+||+|..-+.. -..+.+.|.+. ++.+|.-++
T Consensus 108 ~~~~~~~~~~~DvVI~a~D~~~~-r~~l~~~~~~~~~~p~I~~~~ 151 (212)
T PRK08644 108 EDNIEELFKDCDIVVEAFDNAET-KAMLVETVLEHPGKKLVAASG 151 (212)
T ss_pred HHHHHHHHcCCCEEEECCCCHHH-HHHHHHHHHHhCCCCEEEeeh
Confidence 35677889999999999875543 35678899998 999887544
No 423
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=52.74 E-value=21 Score=32.33 Aligned_cols=44 Identities=18% Similarity=0.229 Sum_probs=33.6
Q ss_pred CCHHHHHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEeeCCC
Q psy1304 114 KNESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITG 159 (184)
Q Consensus 114 ~D~~sL~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltG 159 (184)
.|++.+.=--.++|+|+-|+|+|.. ...+..++++|+.-||++.
T Consensus 78 ~~p~~~~w~~~gvDiVie~tG~~~s--~e~a~~~l~aGa~~V~~Sa 121 (325)
T TIGR01532 78 PTPEALPWRALGVDLVLDCTGVYGN--REQGERHIRAGAKRVLFSH 121 (325)
T ss_pred CChhhccccccCCCEEEEccchhcc--HHHHHHHHHcCCeEEEecC
Confidence 3454443222489999999999955 4788899999999999984
No 424
>PRK07411 hypothetical protein; Validated
Probab=52.66 E-value=23 Score=32.46 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=32.5
Q ss_pred HHHHHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEee
Q psy1304 116 ESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVD 156 (184)
Q Consensus 116 ~~sL~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVD 156 (184)
++...++++++|+||+|...+.. -.-+-++|.+.++.+|.
T Consensus 119 ~~~~~~~~~~~D~Vvd~~d~~~~-r~~ln~~~~~~~~p~v~ 158 (390)
T PRK07411 119 SENALDILAPYDVVVDGTDNFPT-RYLVNDACVLLNKPNVY 158 (390)
T ss_pred HHhHHHHHhCCCEEEECCCCHHH-HHHHHHHHHHcCCCEEE
Confidence 35667889999999999987743 35678999999999774
No 425
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=52.55 E-value=20 Score=29.70 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=23.3
Q ss_pred cCccccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeec
Q psy1304 50 SQPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGAR 95 (184)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr 95 (184)
+...+||++.|+|-=+-|+. ++.+|.+.. .++.+..++
T Consensus 23 ~~~l~gk~v~I~G~G~vG~~----~A~~L~~~G----~~Vvv~D~~ 60 (200)
T cd01075 23 TDSLEGKTVAVQGLGKVGYK----LAEHLLEEG----AKLIVADIN 60 (200)
T ss_pred CCCCCCCEEEEECCCHHHHH----HHHHHHHCC----CEEEEEcCC
Confidence 55689999999995444443 445554443 556655443
No 426
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=52.28 E-value=22 Score=32.12 Aligned_cols=38 Identities=16% Similarity=0.255 Sum_probs=31.5
Q ss_pred HHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEeeC
Q psy1304 119 ILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDI 157 (184)
Q Consensus 119 L~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDl 157 (184)
...+++++|+||+|...+.. -..+-+.|.+.++.+||.
T Consensus 84 ~~~f~~~~DvVv~a~Dn~~a-r~~in~~c~~~~ip~I~~ 121 (312)
T cd01489 84 NVEFFKQFDLVFNALDNLAA-RRHVNKMCLAADVPLIES 121 (312)
T ss_pred hHHHHhcCCEEEECCCCHHH-HHHHHHHHHHCCCCEEEE
Confidence 35788999999999986642 467889999999999985
No 427
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=52.18 E-value=21 Score=25.01 Aligned_cols=38 Identities=16% Similarity=0.131 Sum_probs=25.5
Q ss_pred HHHHhhcCcEEEeccccccccchHHHH--HHHHcCCCEeeCC
Q psy1304 119 ILIMAKKCRVILNCVGPYTWYGEAVVK--ACIEAKTHHVDIT 158 (184)
Q Consensus 119 L~a~l~~~dVVIN~aGPf~~~g~~Vae--ACieAGthYVDlt 158 (184)
..++++.+|+||.|+-|.... .+++ .....+..+||++
T Consensus 55 ~~~~~~~advvilav~p~~~~--~v~~~i~~~~~~~~vis~~ 94 (96)
T PF03807_consen 55 NEEAAQEADVVILAVKPQQLP--EVLSEIPHLLKGKLVISIA 94 (96)
T ss_dssp HHHHHHHTSEEEE-S-GGGHH--HHHHHHHHHHTTSEEEEES
T ss_pred hHHhhccCCEEEEEECHHHHH--HHHHHHhhccCCCEEEEeC
Confidence 356777999999999777554 3333 3577888888875
No 428
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=52.04 E-value=37 Score=23.59 Aligned_cols=55 Identities=20% Similarity=0.186 Sum_probs=40.4
Q ss_pred cEEEeccccccccc--hHHHHHHHHcCCCEeeCC---------------CChHHHHHHHHHhHHHHHHcCCee
Q psy1304 127 RVILNCVGPYTWYG--EAVVKACIEAKTHHVDIT---------------GEPYFMEYMQYEYNTRAQESEVQK 182 (184)
Q Consensus 127 dVVIN~aGPf~~~g--~~VaeACieAGthYVDlt---------------GE~~~~~~ii~~lhe~AkaaGV~I 182 (184)
.+||+..||- +.| ..+.+++.+.|++-+|+. +++.-..++...+.+.+++-|+.+
T Consensus 2 ~~vItv~G~D-rpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~~~~~~~l~~~L~~l~~~~~l~v 73 (76)
T PF13740_consen 2 QLVITVVGPD-RPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIPEDSLERLESALEELAEELGLDV 73 (76)
T ss_dssp EEEEEEEEE---TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEESHHHHHHHHHHHHHHHHHTT-EE
T ss_pred EEEEEEEecC-CCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeCcccHHHHHHHHHHHHHHCCcEE
Confidence 4789999987 345 789999999999987743 455566777789999999988765
No 429
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=51.79 E-value=5.7 Score=35.76 Aligned_cols=95 Identities=11% Similarity=0.190 Sum_probs=59.8
Q ss_pred CCCchhhhhhhCCCC--CceeEEeeeecccccccCC-----CCCCEEEEeCCCHHHHHHHhhcCcEEEeccccccccc-h
Q psy1304 70 SNPRPSAYKADAPTS--NLTRLGLLGARDCLYRENL-----IDIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYG-E 141 (184)
Q Consensus 70 ~~~r~~~~La~~~~~--~~~~iaLAGrr~~lg~~~~-----~~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~g-~ 141 (184)
.-|+-.-.|-+.+.- +-.++++-||+..-|.+.. .+...-.|...- ..+...++++|+||.++|--.... +
T Consensus 138 CTp~gi~~ll~~~~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T-~~l~~~~k~ADIvv~AvG~p~~i~~d 216 (283)
T COG0190 138 CTPAGIMTLLEEYGIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT-KDLASITKNADIVVVAVGKPHFIKAD 216 (283)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC-CCHHHHhhhCCEEEEecCCccccccc
Confidence 344544455533322 1268999999987776533 344444554433 568999999999999999443332 2
Q ss_pred HHHH--HHHHcCCCEee---CCCChHHHH
Q psy1304 142 AVVK--ACIEAKTHHVD---ITGEPYFME 165 (184)
Q Consensus 142 ~Vae--ACieAGthYVD---ltGE~~~~~ 165 (184)
-+-+ .-++-|+.|++ ++||.+|-.
T Consensus 217 ~vk~gavVIDVGinrv~~~kl~GDVdf~~ 245 (283)
T COG0190 217 MVKPGAVVIDVGINRVNDGKLVGDVDFDS 245 (283)
T ss_pred cccCCCEEEecCCccccCCceEeeccHHH
Confidence 2211 24677888887 889888753
No 430
>KOG4039|consensus
Probab=51.78 E-value=67 Score=28.11 Aligned_cols=78 Identities=13% Similarity=0.064 Sum_probs=56.4
Q ss_pred hhhhhhhCCCCCceeEEeeeecccccccCCCCCCEEEEeCCCHHHHHHHhhcCcEEEeccccccc-------------cc
Q psy1304 74 PSAYKADAPTSNLTRLGLLGARDCLYRENLIDIPIIIADLKNESSILIMAKKCRVILNCVGPYTW-------------YG 140 (184)
Q Consensus 74 ~~~~La~~~~~~~~~iaLAGrr~~lg~~~~~~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~-------------~g 140 (184)
...+++.++.= -|+.+-+||+...++....+....+|.+.-+++....++.||..-|.|--.. +.
T Consensus 34 llk~~~E~~~F--SKV~~i~RR~~~d~at~k~v~q~~vDf~Kl~~~a~~~qg~dV~FcaLgTTRgkaGadgfykvDhDyv 111 (238)
T KOG4039|consen 34 LLKHAQEAPQF--SKVYAILRRELPDPATDKVVAQVEVDFSKLSQLATNEQGPDVLFCALGTTRGKAGADGFYKVDHDYV 111 (238)
T ss_pred HHHHHHhcccc--eeEEEEEeccCCCccccceeeeEEechHHHHHHHhhhcCCceEEEeecccccccccCceEeechHHH
Confidence 55666666655 5888888887444434467888889998888999999999999999875321 11
Q ss_pred hHHHHHHHHcCCC
Q psy1304 141 EAVVKACIEAKTH 153 (184)
Q Consensus 141 ~~VaeACieAGth 153 (184)
...+++|.+.||.
T Consensus 112 l~~A~~AKe~Gck 124 (238)
T KOG4039|consen 112 LQLAQAAKEKGCK 124 (238)
T ss_pred HHHHHHHHhCCCe
Confidence 5666777777776
No 431
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=51.70 E-value=24 Score=31.89 Aligned_cols=47 Identities=11% Similarity=0.135 Sum_probs=35.9
Q ss_pred EEEEeCCCHHHHHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEee
Q psy1304 108 IIIADLKNESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVD 156 (184)
Q Consensus 108 ~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVD 156 (184)
.+..++ +++.+.++++++|+||.|..-+. ...-+.++|.+.|+.+|.
T Consensus 100 ~~~~~~-~~~~~~~~~~~~DlVid~~Dn~~-~r~~ln~~~~~~~iP~i~ 146 (339)
T PRK07688 100 AIVQDV-TAEELEELVTGVDLIIDATDNFE-TRFIVNDAAQKYGIPWIY 146 (339)
T ss_pred EEeccC-CHHHHHHHHcCCCEEEEcCCCHH-HHHHHHHHHHHhCCCEEE
Confidence 333344 35677889999999999998653 346788999999999775
No 432
>PRK00124 hypothetical protein; Validated
Probab=51.31 E-value=1.2e+02 Score=24.92 Aligned_cols=83 Identities=12% Similarity=0.137 Sum_probs=52.3
Q ss_pred eeeecccccccCCCCCCEEEEeCC-CH--HHHHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEeeCCCChH---HH
Q psy1304 91 LLGARDCLYRENLIDIPIIIADLK-NE--SSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPY---FM 164 (184)
Q Consensus 91 LAGrr~~lg~~~~~~v~~v~vDv~-D~--~sL~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltGE~~---~~ 164 (184)
+|..+..+..+..+.++.+++|.. |. ..+.+.++.-|+||.. ..+++..|++.|+..++-.|+.- -+
T Consensus 30 Vas~n~~~~~~~~~~v~~v~V~~g~D~AD~~Iv~~~~~gDiVIT~-------Di~LAa~~l~Kga~vl~prG~~yt~~nI 102 (151)
T PRK00124 30 VASFNHFLRVPYSPFIRTVYVDAGFDAADNEIVQLAEKGDIVITQ-------DYGLAALALEKGAIVLNPRGYIYTNDNI 102 (151)
T ss_pred EEeCCcccCCCCCCceEEEEeCCCCChHHHHHHHhCCCCCEEEeC-------CHHHHHHHHHCCCEEECCCCcCCCHHHH
Confidence 354455444322244677888643 22 2456777778999965 46999999999999999999632 12
Q ss_pred HHH--HHHhHHHHHHcCC
Q psy1304 165 EYM--QYEYNTRAQESEV 180 (184)
Q Consensus 165 ~~i--i~~lhe~AkaaGV 180 (184)
... ..-+.++-+++|.
T Consensus 103 ~~~L~~R~~~~~lR~~G~ 120 (151)
T PRK00124 103 DQLLAMRDLMATLRRSGI 120 (151)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 211 1345666666664
No 433
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=51.21 E-value=19 Score=32.16 Aligned_cols=93 Identities=16% Similarity=0.147 Sum_probs=55.7
Q ss_pred cccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecc-------cccccCCCCCCEEEEeCCCHHHHHHHhhc
Q psy1304 53 FRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARD-------CLYRENLIDIPIIIADLKNESSILIMAKK 125 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~-------~lg~~~~~~v~~v~vDv~D~~sL~a~l~~ 125 (184)
.+||+.-|.| |--.|| |+-.+|+..-+.-.++++-...+ ++.+ ..+..-+..||+.|.++++++++.
T Consensus 4 L~GK~~lI~G-van~rS----IAwGIAk~l~~~GAeL~fTy~~e~l~krv~~la~-~~~s~~v~~cDV~~d~~i~~~f~~ 77 (259)
T COG0623 4 LEGKRILIMG-VANNRS----IAWGIAKALAEQGAELAFTYQGERLEKRVEELAE-ELGSDLVLPCDVTNDESIDALFAT 77 (259)
T ss_pred cCCceEEEEE-eccccc----HHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHh-hccCCeEEecCCCCHHHHHHHHHH
Confidence 3577766665 223344 66666643332115555555333 2222 224445799999999999998873
Q ss_pred -------CcEEEeccccccccchHHHHHHHHcCCCEeeCCCC
Q psy1304 126 -------CRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGE 160 (184)
Q Consensus 126 -------~dVVIN~aGPf~~~g~~VaeACieAGthYVDltGE 160 (184)
-|.+|+|+| |.... +-.-.|+|++-|
T Consensus 78 i~~~~g~lD~lVHsIa-Fa~k~--------el~G~~~dtsre 110 (259)
T COG0623 78 IKKKWGKLDGLVHSIA-FAPKE--------ELKGDYLDTSRE 110 (259)
T ss_pred HHHhhCcccEEEEEec-cCChH--------HhCCcccccCHH
Confidence 799999997 54421 234458886544
No 434
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=51.11 E-value=17 Score=34.05 Aligned_cols=51 Identities=16% Similarity=0.108 Sum_probs=37.7
Q ss_pred CEEEEeCCCHHHHHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEeeCCC
Q psy1304 107 PIIIADLKNESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITG 159 (184)
Q Consensus 107 ~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltG 159 (184)
++....-.|++.+.=--.++|+||-|.|.|.. ...+...+++|+.-||+++
T Consensus 132 ~I~v~~~~dp~~~~w~~~gvDiVie~TG~f~s--~~~a~~hl~aGAkkV~iSa 182 (395)
T PLN03096 132 VIKVVSDRNPLNLPWGELGIDLVIEGTGVFVD--REGAGKHIQAGAKKVLITA 182 (395)
T ss_pred EEEEEEcCCcccccccccCCCEEEECcchhhh--HHHHHHHHHCCCEEEEeCC
Confidence 34444555666554222489999999999844 4678899999999999996
No 435
>TIGR00060 L18_bact ribosomal protein L18, bacterial type. The archaeal and eukaryotic type rpL18 is not detectable under this model.
Probab=51.05 E-value=30 Score=27.13 Aligned_cols=42 Identities=17% Similarity=0.125 Sum_probs=34.1
Q ss_pred ccchHHHHHHHHcCCC--EeeCCCChHHHHHHHHHhHHHHHHcCCe
Q psy1304 138 WYGEAVVKACIEAKTH--HVDITGEPYFMEYMQYEYNTRAQESEVQ 181 (184)
Q Consensus 138 ~~g~~VaeACieAGth--YVDltGE~~~~~~ii~~lhe~AkaaGV~ 181 (184)
..|.-+++.|++.|+. ++|- |...|.-.+ ..+.|.|++.|+.
T Consensus 70 ~vG~~la~ra~~~gi~~vvfDr-gg~~YhGrv-~A~a~~aRe~Gl~ 113 (114)
T TIGR00060 70 KVGKLVAERLKEKGIKDVVFDR-GGYKYHGRV-AALAEAAREAGLN 113 (114)
T ss_pred HHHHHHHHHHHHCCCCEEEEeC-CCCcchHHH-HHHHHHHHHhCCC
Confidence 4578999999999999 8996 455555565 8999999999974
No 436
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=50.94 E-value=1.2e+02 Score=26.54 Aligned_cols=72 Identities=21% Similarity=0.091 Sum_probs=48.0
Q ss_pred EEEEeCCCHHHHHHHhh---cCcEEEeccccccccchHHHHHHHHcCCCEeeCC----CChHHH---HHHHHHhHHHHHH
Q psy1304 108 IIIADLKNESSILIMAK---KCRVILNCVGPYTWYGEAVVKACIEAKTHHVDIT----GEPYFM---EYMQYEYNTRAQE 177 (184)
Q Consensus 108 ~v~vDv~D~~sL~a~l~---~~dVVIN~aGPf~~~g~~VaeACieAGthYVDlt----GE~~~~---~~ii~~lhe~Aka 177 (184)
.+.+|..+++.++++++ +.+ +||.+--....-+.+++.+.+.|+.+|=++ |.+.-. .+...+.-+.|.+
T Consensus 71 plsIDT~~~~v~eaaL~~~~G~~-iINsIs~~~~~~~~~~~l~~~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~ 149 (261)
T PRK07535 71 PLCIDSPNPAAIEAGLKVAKGPP-LINSVSAEGEKLEVVLPLVKKYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADE 149 (261)
T ss_pred CEEEeCCCHHHHHHHHHhCCCCC-EEEeCCCCCccCHHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 36899999999999998 544 677765433223578888999999988322 333211 1222455667888
Q ss_pred cCC
Q psy1304 178 SEV 180 (184)
Q Consensus 178 aGV 180 (184)
+|+
T Consensus 150 ~GI 152 (261)
T PRK07535 150 YGI 152 (261)
T ss_pred cCC
Confidence 888
No 437
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=50.81 E-value=23 Score=30.47 Aligned_cols=38 Identities=11% Similarity=-0.000 Sum_probs=31.1
Q ss_pred HHHhhcCcEEEeccccccccchHHHHHHHHcCCCEeeCC
Q psy1304 120 LIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDIT 158 (184)
Q Consensus 120 ~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDlt 158 (184)
..+++++|+||+|..-+. .-..+-+.|...++.++|..
T Consensus 86 ~~f~~~~DvVi~a~Dn~~-aR~~ln~~c~~~~iplI~~g 123 (234)
T cd01484 86 DTFFEQFHIIVNALDNII-ARRYVNGMLIFLIVPLIESG 123 (234)
T ss_pred HHHHhCCCEEEECCCCHH-HHHHHHHHHHHcCCCEEEEc
Confidence 468899999999987553 34668889999999999863
No 438
>PRK06153 hypothetical protein; Provisional
Probab=50.13 E-value=29 Score=32.63 Aligned_cols=50 Identities=12% Similarity=0.100 Sum_probs=35.5
Q ss_pred CCEEEEeCCCHHHHHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEeeCC
Q psy1304 106 IPIIIADLKNESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDIT 158 (184)
Q Consensus 106 v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDlt 158 (184)
+..+...+ +++.+. .+.++|+|+.|+.=+. .-.-+.++|.+.|+.|||+.
T Consensus 249 I~~~~~~I-~~~n~~-~L~~~DiV~dcvDn~~-aR~~ln~~a~~~gIP~Id~G 298 (393)
T PRK06153 249 IVPHPEYI-DEDNVD-ELDGFTFVFVCVDKGS-SRKLIVDYLEALGIPFIDVG 298 (393)
T ss_pred EEEEeecC-CHHHHH-HhcCCCEEEEcCCCHH-HHHHHHHHHHHcCCCEEEee
Confidence 33333445 556555 6789999999997332 23567789999999999974
No 439
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=50.00 E-value=37 Score=35.11 Aligned_cols=49 Identities=20% Similarity=0.396 Sum_probs=36.9
Q ss_pred CCCCEEEEeCC------CHHHHHHHhhcCcEEEecccccccc---------c----hHHHHHHHHcCC
Q psy1304 104 IDIPIIIADLK------NESSILIMAKKCRVILNCVGPYTWY---------G----EAVVKACIEAKT 152 (184)
Q Consensus 104 ~~v~~v~vDv~------D~~sL~a~l~~~dVVIN~aGPf~~~---------g----~~VaeACieAGt 152 (184)
.++.++..|+. +.+....+..++|+||||+++.... + ..++++|...++
T Consensus 1034 ~~i~~~~gDl~~~~lgl~~~~~~~l~~~~d~iiH~Aa~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~ 1101 (1389)
T TIGR03443 1034 SRIEVVLGDLSKEKFGLSDEKWSDLTNEVDVIIHNGALVHWVYPYSKLRDANVIGTINVLNLCAEGKA 1101 (1389)
T ss_pred cceEEEeccCCCccCCcCHHHHHHHHhcCCEEEECCcEecCccCHHHHHHhHHHHHHHHHHHHHhCCC
Confidence 35788888986 4466778888999999999876421 1 577888888765
No 440
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=49.82 E-value=21 Score=32.68 Aligned_cols=45 Identities=13% Similarity=0.167 Sum_probs=34.1
Q ss_pred CCCHHHHHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEeeCCC
Q psy1304 113 LKNESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITG 159 (184)
Q Consensus 113 v~D~~sL~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltG 159 (184)
-.||+.|.=--.+.|+|+-|.|.|.. ...+.+.+++|+.-||+++
T Consensus 78 ~~dp~~lpW~~~gvDiVle~tG~~~s--~~~a~~~l~aGak~V~iSa 122 (337)
T PTZ00023 78 EKDPAAIPWGKNGVDVVCESTGVFLT--KEKAQAHLKGGAKKVIMSA 122 (337)
T ss_pred CCChhhCCccccCCCEEEEecchhcC--HHHHHHHhhCCCEEEEeCC
Confidence 34555444223489999999998843 5778889999999999997
No 441
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=49.72 E-value=28 Score=31.82 Aligned_cols=41 Identities=12% Similarity=0.050 Sum_probs=32.4
Q ss_pred CHHHHHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEee
Q psy1304 115 NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVD 156 (184)
Q Consensus 115 D~~sL~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVD 156 (184)
+++.+.++++++|+||+|..-+. .-.-+-++|...|+.+|.
T Consensus 121 ~~~~~~~~~~~~DlVid~~Dn~~-~r~~in~~~~~~~iP~v~ 161 (370)
T PRK05600 121 TAENAVELLNGVDLVLDGSDSFA-TKFLVADAAEITGTPLVW 161 (370)
T ss_pred CHHHHHHHHhCCCEEEECCCCHH-HHHHHHHHHHHcCCCEEE
Confidence 35667889999999999998653 235667899999998765
No 442
>PLN02438 inositol-3-phosphate synthase
Probab=49.61 E-value=25 Score=34.26 Aligned_cols=37 Identities=14% Similarity=0.040 Sum_probs=28.3
Q ss_pred HHHHHHHcCCCEeeCCCChHHHHHHHHHhHHHHHHcCCeee
Q psy1304 143 VVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVQKC 183 (184)
Q Consensus 143 VaeACieAGthYVDltGE~~~~~~ii~~lhe~AkaaGV~Iv 183 (184)
-+.||+++||.||.-+-...|. -.+-|.|+++|++++
T Consensus 267 YA~AAl~eG~~fVNgsP~~t~v----P~~~elA~~~gvpi~ 303 (510)
T PLN02438 267 YALACILEGVPFINGSPQNTFV----PGVIELAVKKNSLIG 303 (510)
T ss_pred HHHHHHHcCCCeEecCCccccC----hhhHHHHHHcCCCEe
Confidence 3679999999999987655553 356677889998875
No 443
>PRK14852 hypothetical protein; Provisional
Probab=49.59 E-value=42 Score=35.13 Aligned_cols=43 Identities=7% Similarity=0.148 Sum_probs=34.5
Q ss_pred CHHHHHHHhhcCcEEEeccccccc-cchHHHHHHHHcCCCEeeC
Q psy1304 115 NESSILIMAKKCRVILNCVGPYTW-YGEAVVKACIEAKTHHVDI 157 (184)
Q Consensus 115 D~~sL~a~l~~~dVVIN~aGPf~~-~g~~VaeACieAGthYVDl 157 (184)
+++.+.++++++|+||+|..-|.. .-..+..+|.+.|+.+|..
T Consensus 412 ~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~a 455 (989)
T PRK14852 412 AAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITA 455 (989)
T ss_pred CHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEe
Confidence 567889999999999999975532 2357788999999998763
No 444
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=49.46 E-value=35 Score=25.49 Aligned_cols=41 Identities=20% Similarity=0.142 Sum_probs=29.1
Q ss_pred CHHHHHHHhh--cCcEEEecccccc----c-cchHHHHHHHHcCCCEe
Q psy1304 115 NESSILIMAK--KCRVILNCVGPYT----W-YGEAVVKACIEAKTHHV 155 (184)
Q Consensus 115 D~~sL~a~l~--~~dVVIN~aGPf~----~-~g~~VaeACieAGthYV 155 (184)
+++-++.+.+ +.|+|||.-.|.. . .|..+-++|++.+++|+
T Consensus 56 ~~~i~~~i~~~g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~ 103 (112)
T cd00532 56 EPTVDAAIAEKGKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVT 103 (112)
T ss_pred CcHHHHHHhCCCCEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEE
Confidence 3444444444 4799999976554 2 26889999999999986
No 445
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=49.07 E-value=28 Score=30.27 Aligned_cols=34 Identities=18% Similarity=0.116 Sum_probs=23.8
Q ss_pred hhcCcEEEeccccccccchHHHHHHHHcCCCEee
Q psy1304 123 AKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVD 156 (184)
Q Consensus 123 l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVD 156 (184)
++.-++||+|............+.+.+.|+||+|
T Consensus 83 l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vd 116 (298)
T TIGR00872 83 LEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLD 116 (298)
T ss_pred CCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEe
Confidence 3345788888766655556677777788888888
No 446
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=48.97 E-value=44 Score=27.33 Aligned_cols=43 Identities=14% Similarity=0.031 Sum_probs=23.7
Q ss_pred ccchHHHHHHHHcCCCEeeCCCChHHHHHHHHHhHHHHHHcCC
Q psy1304 138 WYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEV 180 (184)
Q Consensus 138 ~~g~~VaeACieAGthYVDltGE~~~~~~ii~~lhe~AkaaGV 180 (184)
.+.+.++++|++..+|-|=+|+-..........+.|..+++|+
T Consensus 50 ~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~ 92 (143)
T COG2185 50 QTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAGV 92 (143)
T ss_pred CCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHhCC
Confidence 4446666666666666666665443333334555556665553
No 447
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=48.90 E-value=62 Score=23.19 Aligned_cols=27 Identities=7% Similarity=0.083 Sum_probs=14.7
Q ss_pred CCCEeeCCCChHHHHHHHHHhHHHHHHcCCee
Q psy1304 151 KTHHVDITGEPYFMEYMQYEYNTRAQESEVQK 182 (184)
Q Consensus 151 GthYVDltGE~~~~~~ii~~lhe~AkaaGV~I 182 (184)
+++|+|.+|-. .+ ...++++++.|..+
T Consensus 48 ~v~~iDssgi~----~L-~~~~~~~~~~g~~l 74 (106)
T TIGR02886 48 NVTFMDSSGLG----VI-LGRYKKIKNEGGEV 74 (106)
T ss_pred CCcEecchHHH----HH-HHHHHHHHHcCCEE
Confidence 35566665533 33 34556666776654
No 448
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.82 E-value=19 Score=31.87 Aligned_cols=47 Identities=15% Similarity=0.255 Sum_probs=33.4
Q ss_pred eeEEeeeecccccccCC-----CCCCEEEEeCCCHHHHHHHhhcCcEEEeccc
Q psy1304 87 TRLGLLGARDCLYRENL-----IDIPIIIADLKNESSILIMAKKCRVILNCVG 134 (184)
Q Consensus 87 ~~iaLAGrr~~lg~~~~-----~~v~~v~vDv~D~~sL~a~l~~~dVVIN~aG 134 (184)
.++.+.||...-|.+-. .+.....|+- ....|.+.++++|+||||+|
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~gatVtv~~~-~t~~L~~~~~~aDIvI~AtG 211 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNANATVTICHS-RTQNLPELVKQADIIVGAVG 211 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCEEEEEeC-CchhHHHHhccCCEEEEccC
Confidence 68999998763333211 3345556665 55678999999999999997
No 449
>PLN02257 phosphoribosylamine--glycine ligase
Probab=48.79 E-value=51 Score=30.71 Aligned_cols=48 Identities=17% Similarity=0.230 Sum_probs=35.3
Q ss_pred EeCCCHHHHHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEeeCC
Q psy1304 111 ADLKNESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDIT 158 (184)
Q Consensus 111 vDv~D~~sL~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDlt 158 (184)
.|.+|.++|.++++..++-+-.+||-...-..+++++-+.|+.|+--+
T Consensus 46 ~~~~d~~~l~~~a~~~~id~vvvg~E~~lv~~~~d~l~~~Gi~~~Gps 93 (434)
T PLN02257 46 LDISDSAAVISFCRKWGVGLVVVGPEAPLVAGLADDLVKAGIPTFGPS 93 (434)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEECCchHHHHHHHHHHHHCCCCEECCh
Confidence 688999999999997654222367754444688889989999987543
No 450
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=48.55 E-value=24 Score=29.92 Aligned_cols=56 Identities=13% Similarity=0.200 Sum_probs=39.3
Q ss_pred CcEEEeccccccccc--hHHHHHHHHcCCCEee---------------CCCChHHHHHHHHHhHHHHHHcCCee
Q psy1304 126 CRVILNCVGPYTWYG--EAVVKACIEAKTHHVD---------------ITGEPYFMEYMQYEYNTRAQESEVQK 182 (184)
Q Consensus 126 ~dVVIN~aGPf~~~g--~~VaeACieAGthYVD---------------ltGE~~~~~~ii~~lhe~AkaaGV~I 182 (184)
.-+|||++|+-. .| ..++++|.++||..+| ++|.++-+..+...+...-++.|+.+
T Consensus 4 ~~LvItavg~d~-pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisgs~dav~~le~~l~~l~~~~~L~v 76 (176)
T COG2716 4 HYLVITAVGADR-PGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISGSWDAVTLLEATLPLLGAELDLLV 76 (176)
T ss_pred cEEEEEEecCCC-cHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEeeCHHHHHHHHHHhhcccccCCeEE
Confidence 458999999763 34 7999999999999877 56777766666445544444444443
No 451
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=48.51 E-value=44 Score=30.96 Aligned_cols=61 Identities=7% Similarity=0.137 Sum_probs=35.7
Q ss_pred CEEEEeCCCHHHH-HHHh----hcCcEEEeccccccccchHHHHHHHHc--CCCEeeCCCChHHHHHH
Q psy1304 107 PIIIADLKNESSI-LIMA----KKCRVILNCVGPYTWYGEAVVKACIEA--KTHHVDITGEPYFMEYM 167 (184)
Q Consensus 107 ~~v~vDv~D~~sL-~a~l----~~~dVVIN~aGPf~~~g~~VaeACieA--GthYVDltGE~~~~~~i 167 (184)
....+|+.+.+++ ++++ .+.|++||+||+....-....+-=+.. ....+.+.-.++.+..+
T Consensus 242 ~~~~~~v~~~~~~~~~~~~~~~~~~D~~i~~Aavsd~~~~~~~~~Ki~~~~~~~~l~L~~~pdil~~l 309 (390)
T TIGR00521 242 GVKSIKVSTAEEMLEAALNELAKDFDIFISAAAVADFKPKTVFEGKIKKQGEELSLKLVKNPDIIAEV 309 (390)
T ss_pred CcEEEEeccHHHHHHHHHHhhcccCCEEEEccccccccccccccccccccCCceeEEEEeCcHHHHHH
Confidence 3467899999888 5555 358999999998754321111111111 12245555556665554
No 452
>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=47.66 E-value=37 Score=27.45 Aligned_cols=33 Identities=18% Similarity=0.322 Sum_probs=25.9
Q ss_pred CCCEEEEeCCC-HHHHHHHhh-------cCcEEEecccccc
Q psy1304 105 DIPIIIADLKN-ESSILIMAK-------KCRVILNCVGPYT 137 (184)
Q Consensus 105 ~v~~v~vDv~D-~~sL~a~l~-------~~dVVIN~aGPf~ 137 (184)
...+..+|+.+ .+++..+++ +.|++||++|.+.
T Consensus 58 ~~~~~~~Dvs~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~ 98 (251)
T COG1028 58 RAAAVAADVSDDEESVEALVAAAEEEFGRIDILVNNAGIAG 98 (251)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence 46677799998 888777665 3789999999654
No 453
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=47.43 E-value=68 Score=28.83 Aligned_cols=53 Identities=11% Similarity=0.022 Sum_probs=42.8
Q ss_pred CCCCEEEEeCCCHHHHHHHhh-----cCcEEEeccccccccchHHHHHHHHcCCCEeeCCC
Q psy1304 104 IDIPIIIADLKNESSILIMAK-----KCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITG 159 (184)
Q Consensus 104 ~~v~~v~vDv~D~~sL~a~l~-----~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltG 159 (184)
...+.+++|-.++++++++++ ..++.+-+.| .....=+++=+++|++|+.++.
T Consensus 218 ~gaDiI~LDnm~~e~vk~av~~~~~~~~~v~ieaSG---GI~~~ni~~yA~tGvD~Is~ga 275 (289)
T PRK07896 218 EGAELVLLDNFPVWQTQEAVQRRDARAPTVLLESSG---GLTLDTAAAYAETGVDYLAVGA 275 (289)
T ss_pred cCCCEEEeCCCCHHHHHHHHHHHhccCCCEEEEEEC---CCCHHHHHHHHhcCCCEEEeCh
Confidence 568999999999999999984 3578888887 4445566667789999999854
No 454
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=46.91 E-value=23 Score=32.45 Aligned_cols=50 Identities=18% Similarity=0.143 Sum_probs=36.0
Q ss_pred EEEEeCCCHHHHHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEeeCCC
Q psy1304 108 IIIADLKNESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITG 159 (184)
Q Consensus 108 ~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltG 159 (184)
+....-.||+++.=---+.|+|+-|.|.|.. ...+...+++|+.-||+++
T Consensus 73 I~v~~~~dp~~~~W~~~gvDiV~e~tG~f~s--~~~a~~hl~aGak~V~iSa 122 (337)
T PRK07403 73 IKCVSDRNPLNLPWKEWGIDLIIESTGVFVT--KEGASKHIQAGAKKVLITA 122 (337)
T ss_pred EEEEEcCCcccCChhhcCCCEEEeccchhhh--HHHHHHHhhCCcEEEEeCC
Confidence 3333434555554222389999999999844 4677888899999999996
No 455
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=46.80 E-value=1.8e+02 Score=24.93 Aligned_cols=50 Identities=18% Similarity=-0.039 Sum_probs=40.0
Q ss_pred EEEEeCCCHHHHHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEeeCC
Q psy1304 108 IIIADLKNESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDIT 158 (184)
Q Consensus 108 ~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDlt 158 (184)
.+.+|..+++.++++++-..-+||-+.-+.. ...+++.+.+.|+.+|=+.
T Consensus 78 piSIDT~~~~v~~aaL~~g~~iINdis~~~~-~~~~~~l~~~~~~~vV~m~ 127 (258)
T cd00423 78 PISVDTFNAEVAEAALKAGADIINDVSGGRG-DPEMAPLAAEYGAPVVLMH 127 (258)
T ss_pred eEEEeCCcHHHHHHHHHhCCCEEEeCCCCCC-ChHHHHHHHHcCCCEEEEC
Confidence 4789999999999999887778888865532 2678899999999976554
No 456
>PRK06091 membrane protein FdrA; Validated
Probab=46.74 E-value=46 Score=32.71 Aligned_cols=62 Identities=13% Similarity=0.119 Sum_probs=45.4
Q ss_pred HHHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEeeCCCChHHHHHHHHHhHHHHHHcCCeee
Q psy1304 118 SILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVQKC 183 (184)
Q Consensus 118 sL~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltGE~~~~~~ii~~lhe~AkaaGV~Iv 183 (184)
+..+.+.+.|++|-++.+- +-..+++.|++.|.+-+=+++.... ..+.++.+.|++.|+.++
T Consensus 110 ~a~~~lpe~DLAvIsVPa~--~v~~al~ea~~~G~~viI~S~gfg~--~~E~~L~e~Ar~~Glrvm 171 (555)
T PRK06091 110 SACQKLPDANLALISVAGE--YAAELAEQALDRNLNVMMFSDNVTL--EDEIRLKTRAREKGLLVM 171 (555)
T ss_pred HHHhcCCCCCEEEEecCHH--HHHHHHHHHHHcCCeEEEEcCCCCH--HHHHHHHHHHHHcCCEEE
Confidence 3344445689999998533 3468899999999887766666642 334689999999999886
No 457
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=46.72 E-value=26 Score=32.18 Aligned_cols=47 Identities=11% Similarity=0.178 Sum_probs=34.5
Q ss_pred EeCCCHHHHHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEeeCCC
Q psy1304 111 ADLKNESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITG 159 (184)
Q Consensus 111 vDv~D~~sL~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltG 159 (184)
..-.|++++.=--.+.|+|+-|.|.|.. ...+...+++|+.-||+++
T Consensus 75 ~~~~dp~~~~W~~~gvDiVle~tG~f~s--~~~a~~hl~aGak~V~iSa 121 (343)
T PRK07729 75 LNNRDPKELPWTDLGIDIVIEATGKFNS--KEKAILHVEAGAKKVILTA 121 (343)
T ss_pred EEcCChhhCcccccCCCEEEEccchhhh--HhHHHHHHHcCCeEEEeCC
Confidence 3334555544222489999999999844 4677888899999999995
No 458
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=46.65 E-value=22 Score=32.45 Aligned_cols=35 Identities=20% Similarity=0.413 Sum_probs=29.9
Q ss_pred hcCcEEEeccccccccchHHHHHHHHcCCCEeeCCCC
Q psy1304 124 KKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGE 160 (184)
Q Consensus 124 ~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltGE 160 (184)
+++|+|+-|+|.|.. ...+...+++|+.-||+++-
T Consensus 87 ~gvDiVle~tG~~~s--~~~a~~hl~aGak~V~iSap 121 (334)
T PRK08955 87 SGCDVVIEASGVMKT--KALLQAYLDQGVKRVVVTAP 121 (334)
T ss_pred cCCCEEEEccchhhc--HHHHHHHHHCCCEEEEECCC
Confidence 499999999999843 57788999999999999853
No 459
>PRK05968 hypothetical protein; Provisional
Probab=46.36 E-value=49 Score=29.91 Aligned_cols=56 Identities=7% Similarity=-0.012 Sum_probs=40.3
Q ss_pred CCCCEEEEeCCCHHHHHHHhhcCcEEEec--cccccccc--hHHHHHHHHcCCC-EeeCCC
Q psy1304 104 IDIPIIIADLKNESSILIMAKKCRVILNC--VGPYTWYG--EAVVKACIEAKTH-HVDITG 159 (184)
Q Consensus 104 ~~v~~v~vDv~D~~sL~a~l~~~dVVIN~--aGPf~~~g--~~VaeACieAGth-YVDltG 159 (184)
..+++..+|..|++++++.+.++++|+-+ .||..... ..+++.|-+.|+. .+|-+-
T Consensus 126 ~G~~v~~vd~~d~~~l~~~i~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~ 186 (389)
T PRK05968 126 MGVEVDYVDGRDEEAVAKALPGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSW 186 (389)
T ss_pred cCceEEEeCCCCHHHHHHhcccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCC
Confidence 35677888999999999999888877633 33332222 6788889888987 778653
No 460
>PRK05593 rplR 50S ribosomal protein L18; Reviewed
Probab=46.34 E-value=40 Score=26.39 Aligned_cols=43 Identities=12% Similarity=0.128 Sum_probs=34.3
Q ss_pred cccchHHHHHHHHcCCC--EeeCCCChHHHHHHHHHhHHHHHHcCCe
Q psy1304 137 TWYGEAVVKACIEAKTH--HVDITGEPYFMEYMQYEYNTRAQESEVQ 181 (184)
Q Consensus 137 ~~~g~~VaeACieAGth--YVDltGE~~~~~~ii~~lhe~AkaaGV~ 181 (184)
+..|.-+++.|++.|+. ++|-.|.. +.-.+ ..+-+.|+++|+-
T Consensus 72 ~~vG~~la~ra~~~gi~~vvfDrg~~~-yhGrV-~a~a~~are~Gl~ 116 (117)
T PRK05593 72 KKVGKLIAERAKAKGIKQVVFDRGGYK-YHGRV-KALADAAREAGLK 116 (117)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcCCCCc-ccHHH-HHHHHHHHHhCCC
Confidence 45689999999999999 89975544 34454 8999999999974
No 461
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=46.25 E-value=7.8 Score=34.43 Aligned_cols=129 Identities=8% Similarity=0.039 Sum_probs=64.4
Q ss_pred hcceEEEEec--ceeeeee-ech-hhhhccccccc---c--CccccceeeecccccCCCCCCCchhhhhhhCCCCCceeE
Q psy1304 19 FEGEYLIFSK--GTVTAKV-LSS-RKQRKEDRIGE---S--QPFRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRL 89 (184)
Q Consensus 19 ~~~~~~~~~~--~~~~~~~-~~~-~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~i 89 (184)
++|-++.|+. |.+++.+ +.. -....-|.++. . ..-.++++.|-|-=.-+|. .+.+|+...+= -+|
T Consensus 84 ~~g~i~l~d~~tG~~~ai~~d~~~lT~~RTaa~~~laa~~la~~~~~~v~iiGaG~qA~~----~~~al~~~~~i--~~v 157 (326)
T TIGR02992 84 LNGMMVLLSSRTGLLQALLLDNGYLTDVRTAAAGAVAARHLAREDSSVVAIFGAGMQARL----QLEALTLVRDI--RSA 157 (326)
T ss_pred eeEEEEEEECCCCCceEEEcCCchHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCHHHHH----HHHHHHHhCCc--cEE
Confidence 4577788887 4456764 332 11111122100 0 0113345555542111222 44455444332 467
Q ss_pred EeeeecccccccCC----CCCCEEEEeCCCHHHHHHHhhcCcEEEeccccccccchHHHH-HHHHcCCCEeeCCCC
Q psy1304 90 GLLGARDCLYRENL----IDIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYGEAVVK-ACIEAKTHHVDITGE 160 (184)
Q Consensus 90 aLAGrr~~lg~~~~----~~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~g~~Vae-ACieAGthYVDltGE 160 (184)
.+.+|+.+....-. ....+..... ++++++++++|+||||.+ - ..+++. ..++.|+|-.++.-+
T Consensus 158 ~V~~R~~~~a~~~a~~~~~~~g~~v~~~---~~~~~av~~aDiVvtaT~-s---~~p~i~~~~l~~g~~i~~vg~~ 226 (326)
T TIGR02992 158 RIWARDSAKAEALALQLSSLLGIDVTAA---TDPRAAMSGADIIVTTTP-S---ETPILHAEWLEPGQHVTAMGSD 226 (326)
T ss_pred EEECCCHHHHHHHHHHHHhhcCceEEEe---CCHHHHhccCCEEEEecC-C---CCcEecHHHcCCCcEEEeeCCC
Confidence 78888664432111 1111111122 336778899999999984 3 235554 567889987776543
No 462
>KOG4169|consensus
Probab=45.41 E-value=19 Score=32.18 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=30.4
Q ss_pred CCCCEEEEeCCCHHHHHHHhhc-------CcEEEecccccccc
Q psy1304 104 IDIPIIIADLKNESSILIMAKK-------CRVILNCVGPYTWY 139 (184)
Q Consensus 104 ~~v~~v~vDv~D~~sL~a~l~~-------~dVVIN~aGPf~~~ 139 (184)
.++-++++|+.+..++++.++. -|++||-+|-+...
T Consensus 55 ~~v~F~~~DVt~~~~~~~~f~ki~~~fg~iDIlINgAGi~~dk 97 (261)
T KOG4169|consen 55 VSVIFIKCDVTNRGDLEAAFDKILATFGTIDILINGAGILDDK 97 (261)
T ss_pred ceEEEEEeccccHHHHHHHHHHHHHHhCceEEEEcccccccch
Confidence 4567999999999999988764 79999999987654
No 463
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=45.34 E-value=22 Score=25.77 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=26.7
Q ss_pred HHHHHhhc--CcEEEeccccccc----cchHHHHHHHHcCCCEe
Q psy1304 118 SILIMAKK--CRVILNCVGPYTW----YGEAVVKACIEAKTHHV 155 (184)
Q Consensus 118 sL~a~l~~--~dVVIN~aGPf~~----~g~~VaeACieAGthYV 155 (184)
++.++++. .|+|||...|+.. .|..+-++|++.++.|+
T Consensus 51 ~i~~~i~~~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 51 QIMDLIKNGKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHHHHHHTTSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred HHHHHHHcCCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 36666664 7999999988865 35677788888887764
No 464
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=45.21 E-value=23 Score=32.32 Aligned_cols=33 Identities=21% Similarity=0.333 Sum_probs=28.7
Q ss_pred cCcEEEeccccccccchHHHHHHHHcCCCEeeCCC
Q psy1304 125 KCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITG 159 (184)
Q Consensus 125 ~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltG 159 (184)
++|+|+-|.|.|.. ..-+.+.+++|+.-||+++
T Consensus 89 gvDiVle~tG~f~s--~~~a~~hl~aGak~V~iSa 121 (331)
T PRK15425 89 GVDVVAEATGLFLT--DETARKHITAGAKKVVMTG 121 (331)
T ss_pred CCCEEEEecchhhc--HHHHHHHHHCCCEEEEeCC
Confidence 89999999999844 4678889999999999995
No 465
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=45.12 E-value=39 Score=30.73 Aligned_cols=49 Identities=14% Similarity=0.073 Sum_probs=32.7
Q ss_pred EEeCCCHHHHHHHhhcCcEEEeccccccc-----cchHHHHHHHHcCCCEeeCCC
Q psy1304 110 IADLKNESSILIMAKKCRVILNCVGPYTW-----YGEAVVKACIEAKTHHVDITG 159 (184)
Q Consensus 110 ~vDv~D~~sL~a~l~~~dVVIN~aGPf~~-----~g~~VaeACieAGthYVDltG 159 (184)
..+..+++.+.+.++++|+||||++.... .....++ +++.|.-.+|++-
T Consensus 215 ~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~p~lit~~~l~-~mk~g~vIvDva~ 268 (370)
T TIGR00518 215 HTRYSNAYEIEDAVKRADLLIGAVLIPGAKAPKLVSNSLVA-QMKPGAVIVDVAI 268 (370)
T ss_pred EeccCCHHHHHHHHccCCEEEEccccCCCCCCcCcCHHHHh-cCCCCCEEEEEec
Confidence 34566778899999999999999842111 1233443 3567777888763
No 466
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=45.11 E-value=53 Score=28.18 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=17.0
Q ss_pred hHHHHHHHHcCCCEeeCCCChH
Q psy1304 141 EAVVKACIEAKTHHVDITGEPY 162 (184)
Q Consensus 141 ~~VaeACieAGthYVDltGE~~ 162 (184)
...++..++.|+|+||++++..
T Consensus 27 ~~~a~~~~~~GAdiIDvG~~st 48 (258)
T cd00423 27 LEHARRMVEEGADIIDIGGEST 48 (258)
T ss_pred HHHHHHHHHCCCCEEEECCCcC
Confidence 3445667899999999998753
No 467
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=44.83 E-value=56 Score=27.01 Aligned_cols=38 Identities=5% Similarity=-0.121 Sum_probs=29.8
Q ss_pred HHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEeeC
Q psy1304 119 ILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDI 157 (184)
Q Consensus 119 L~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDl 157 (184)
..++++++|+||.|..++ ..-..+-++|.+.|+.++..
T Consensus 104 ~~~~~~~~dvVi~~~~~~-~~~~~ln~~c~~~~ip~i~~ 141 (197)
T cd01492 104 PEEFFSQFDVVVATELSR-AELVKINELCRKLGVKFYAT 141 (197)
T ss_pred HHHHHhCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEE
Confidence 356789999999998775 33467888999999997653
No 468
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=44.60 E-value=51 Score=29.77 Aligned_cols=53 Identities=15% Similarity=0.119 Sum_probs=42.6
Q ss_pred CCCCEEEEeCCCHHHHHHHhhc--CcEEEeccccccccchHHHHHHHHcCCCEeeCCC
Q psy1304 104 IDIPIIIADLKNESSILIMAKK--CRVILNCVGPYTWYGEAVVKACIEAKTHHVDITG 159 (184)
Q Consensus 104 ~~v~~v~vDv~D~~sL~a~l~~--~dVVIN~aGPf~~~g~~VaeACieAGthYVDltG 159 (184)
...+.+++|-.+++++.++++. ..+++.+.| .....-+++=+++|++|+.++.
T Consensus 224 aGaDiImLDnmspe~l~~av~~~~~~~~lEaSG---GIt~~ni~~yA~tGVD~IS~ga 278 (294)
T PRK06978 224 HGAQSVLLDNFTLDMMREAVRVTAGRAVLEVSG---GVNFDTVRAFAETGVDRISIGA 278 (294)
T ss_pred cCCCEEEECCCCHHHHHHHHHhhcCCeEEEEEC---CCCHHHHHHHHhcCCCEEEeCc
Confidence 5689999999999999998874 368888888 4445556666789999999854
No 469
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=44.60 E-value=38 Score=31.38 Aligned_cols=46 Identities=15% Similarity=0.059 Sum_probs=36.0
Q ss_pred EEEeCCCHHHHHHHhhc--CcEEEeccccccccchHHHHHHHHcCCCEee
Q psy1304 109 IIADLKNESSILIMAKK--CRVILNCVGPYTWYGEAVVKACIEAKTHHVD 156 (184)
Q Consensus 109 v~vDv~D~~sL~a~l~~--~dVVIN~aGPf~~~g~~VaeACieAGthYVD 156 (184)
+.+|..|.++|.++++. .|+||. ||-...-..+++.|-+.|..++.
T Consensus 50 ~~~~~~d~~~l~~~a~~~~iD~Vv~--g~E~~l~~glad~~~~~Gip~~G 97 (426)
T PRK13789 50 DSFSILDKSSVQSFLKSNPFDLIVV--GPEDPLVAGFADWAAELGIPCFG 97 (426)
T ss_pred cCcCcCCHHHHHHHHHHcCCCEEEE--CCchHHHHHHHHHHHHcCCCcCC
Confidence 34788999999999987 899984 66544446788889999998763
No 470
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=44.55 E-value=35 Score=30.83 Aligned_cols=46 Identities=15% Similarity=0.140 Sum_probs=35.7
Q ss_pred EeCCCHHHHHHHhhcCcE--EEeccccccccchHHHHHHHHcCCCEeeCC
Q psy1304 111 ADLKNESSILIMAKKCRV--ILNCVGPYTWYGEAVVKACIEAKTHHVDIT 158 (184)
Q Consensus 111 vDv~D~~sL~a~l~~~dV--VIN~aGPf~~~g~~VaeACieAGthYVDlt 158 (184)
+|.+|.+.|.++++..++ || .||-...-..+++.+-++|++|+-.+
T Consensus 11 ~~~~d~~~l~~~~~~~~id~vi--~g~E~~l~~~~~d~l~~~Gi~~~g~s 58 (379)
T PRK13790 11 ISESDHQAILDFAKQQNVDWVV--IGPEQPLIDGLADILRANGFKVFGPN 58 (379)
T ss_pred CCCCCHHHHHHHHHHhCCCEEE--ECCcHHHHHHHHHHHHhCCCcEECCC
Confidence 577999999999998654 66 57766555678888999999987543
No 471
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=43.88 E-value=34 Score=30.73 Aligned_cols=37 Identities=16% Similarity=0.137 Sum_probs=27.9
Q ss_pred HHHHhhcCcEEEeccccccc-cchHHHHHHHHcCCCEe
Q psy1304 119 ILIMAKKCRVILNCVGPYTW-YGEAVVKACIEAKTHHV 155 (184)
Q Consensus 119 L~a~l~~~dVVIN~aGPf~~-~g~~VaeACieAGthYV 155 (184)
+.++++++|+||.|..=|.. +-..+=++|.+.|+.+|
T Consensus 145 ~~~li~~~DlVid~tDn~~~r~L~~iN~ac~~~~~PlV 182 (318)
T TIGR03603 145 LKDLLKDYNYIIICTEHSNISLLRGLNKLSKETKKPNT 182 (318)
T ss_pred HHHHhCCCCEEEECCCCccHhHHHHHHHHHHHHCCCEE
Confidence 67889999999999963321 11236699999999987
No 472
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=43.07 E-value=84 Score=28.19 Aligned_cols=58 Identities=12% Similarity=0.089 Sum_probs=32.9
Q ss_pred HHHHhhcCcEEEeccccccccchHHHH------HHHHcCCCEeeCCCC-hHHHHHHHHHhHHHHHHcCCe
Q psy1304 119 ILIMAKKCRVILNCVGPYTWYGEAVVK------ACIEAKTHHVDITGE-PYFMEYMQYEYNTRAQESEVQ 181 (184)
Q Consensus 119 L~a~l~~~dVVIN~aGPf~~~g~~Vae------ACieAGthYVDltGE-~~~~~~ii~~lhe~AkaaGV~ 181 (184)
..++++++|+||.|++..... ..|+. ..+..|..+||.+=- +...+ ++++.+++.|..
T Consensus 51 ~~eaa~~aDvVitmv~~~~~V-~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~----~~a~~~~~~G~~ 115 (286)
T COG2084 51 PAEAAAEADVVITMLPDDAAV-RAVLFGENGLLEGLKPGAIVIDMSTISPETAR----ELAAALAAKGLE 115 (286)
T ss_pred HHHHHHhCCEEEEecCCHHHH-HHHHhCccchhhcCCCCCEEEECCCCCHHHHH----HHHHHHHhcCCc
Confidence 456778888888888532221 22221 112247778887654 44333 456677777654
No 473
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=43.05 E-value=71 Score=29.04 Aligned_cols=42 Identities=10% Similarity=0.056 Sum_probs=34.1
Q ss_pred HHHHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEeeCC
Q psy1304 117 SSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDIT 158 (184)
Q Consensus 117 ~sL~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDlt 158 (184)
+.|...++.-|+||+---.+++...+-.+...+.|+||+|+.
T Consensus 78 ~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~G 119 (300)
T COG1023 78 DDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVG 119 (300)
T ss_pred HHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEecc
Confidence 456777888999999876666666777888999999999964
No 474
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=42.54 E-value=60 Score=29.36 Aligned_cols=53 Identities=15% Similarity=0.185 Sum_probs=42.6
Q ss_pred CCCCEEEEeCCCHHHHHHHhhc--CcEEEeccccccccchHHHHHHHHcCCCEeeCCC
Q psy1304 104 IDIPIIIADLKNESSILIMAKK--CRVILNCVGPYTWYGEAVVKACIEAKTHHVDITG 159 (184)
Q Consensus 104 ~~v~~v~vDv~D~~sL~a~l~~--~dVVIN~aGPf~~~g~~VaeACieAGthYVDltG 159 (184)
...+++++|-.+++++.++++. .++.|.+.| .....=++.=+++|++|+.++.
T Consensus 227 ~gaDiI~LDn~s~e~~~~av~~~~~~~~ieaSG---GI~~~ni~~yA~tGVD~Is~ga 281 (296)
T PRK09016 227 AGADIIMLDNFTTEQMREAVKRTNGRALLEVSG---NVTLETLREFAETGVDFISVGA 281 (296)
T ss_pred cCCCEEEeCCCChHHHHHHHHhhcCCeEEEEEC---CCCHHHHHHHHhcCCCEEEeCc
Confidence 5689999999999999999873 478888888 4445556666899999999854
No 475
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=42.46 E-value=82 Score=27.31 Aligned_cols=55 Identities=18% Similarity=0.109 Sum_probs=0.0
Q ss_pred EEeccccccccc---------hHHHHHHHHcCCCEeeCCC--------------ChHHHHHHHHHhHHH-----------
Q psy1304 129 ILNCVGPYTWYG---------EAVVKACIEAKTHHVDITG--------------EPYFMEYMQYEYNTR----------- 174 (184)
Q Consensus 129 VIN~aGPf~~~g---------~~VaeACieAGthYVDltG--------------E~~~~~~ii~~lhe~----------- 174 (184)
|+|...=.+.-| ...++..+++|+||+|++| |...+..+++..++.
T Consensus 5 ilN~tpdSF~dg~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT~~ 84 (257)
T TIGR01496 5 IVNVTPDSFSDGGRFLSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVDTYR 84 (257)
T ss_pred EEeCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCC
Q ss_pred ------HHHcCCeee
Q psy1304 175 ------AQESEVQKC 183 (184)
Q Consensus 175 ------AkaaGV~Iv 183 (184)
|-+.|+.++
T Consensus 85 ~~vi~~al~~G~~iI 99 (257)
T TIGR01496 85 AEVARAALEAGADII 99 (257)
T ss_pred HHHHHHHHHcCCCEE
No 476
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=42.42 E-value=2.1e+02 Score=24.08 Aligned_cols=91 Identities=7% Similarity=-0.027 Sum_probs=52.8
Q ss_pred chhhhhhhCCCCCceeEEeeeecccccccCCCCCCEEEEeCCCHHHHHHHhhcCcEEEeccccccccchHHHHHHHHcCC
Q psy1304 73 RPSAYKADAPTSNLTRLGLLGARDCLYRENLIDIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKT 152 (184)
Q Consensus 73 r~~~~La~~~~~~~~~iaLAGrr~~lg~~~~~~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGt 152 (184)
.+..+|+. .|+ .++-+-|...... ..+++.+... +...+.+.++.||+||+.+| ..-+--|+..|+
T Consensus 206 ~~~~~l~~-~~~--~~~~v~g~~~~~~--~~~ni~~~~~---~~~~~~~~m~~ad~vIs~~G------~~t~~Ea~~~g~ 271 (318)
T PF13528_consen 206 DLIEALKA-LPD--YQFIVFGPNAADP--RPGNIHVRPF---STPDFAELMAAADLVISKGG------YTTISEALALGK 271 (318)
T ss_pred HHHHHHHh-CCC--CeEEEEcCCcccc--cCCCEEEeec---ChHHHHHHHHhCCEEEECCC------HHHHHHHHHcCC
Confidence 56666666 556 5555556654221 1244443333 33567889999999999986 343445667788
Q ss_pred C--EeeCCCChHHHHHHHHHhHHHHHHcCCee
Q psy1304 153 H--HVDITGEPYFMEYMQYEYNTRAQESEVQK 182 (184)
Q Consensus 153 h--YVDltGE~~~~~~ii~~lhe~AkaaGV~I 182 (184)
. ++...+ +.+|. -..+..++.|+.+
T Consensus 272 P~l~ip~~~---~~EQ~--~~a~~l~~~G~~~ 298 (318)
T PF13528_consen 272 PALVIPRPG---QDEQE--YNARKLEELGLGI 298 (318)
T ss_pred CEEEEeCCC---CchHH--HHHHHHHHCCCeE
Confidence 7 566543 22222 2444566666554
No 477
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=42.34 E-value=50 Score=28.18 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=25.2
Q ss_pred HHHHhhcCcEEEeccccccccchHHH------HHHHHcCCCEeeCCCChH
Q psy1304 119 ILIMAKKCRVILNCVGPYTWYGEAVV------KACIEAKTHHVDITGEPY 162 (184)
Q Consensus 119 L~a~l~~~dVVIN~aGPf~~~g~~Va------eACieAGthYVDltGE~~ 162 (184)
+.++++++|+||-|+.+... -..++ ..++..|..++|++.-.+
T Consensus 52 ~~e~~~~~d~vi~~vp~~~~-~~~v~~~~~~~~~~~~~g~iiid~st~~~ 100 (296)
T PRK11559 52 AKAVAEQCDVIITMLPNSPH-VKEVALGENGIIEGAKPGTVVIDMSSIAP 100 (296)
T ss_pred HHHHHhcCCEEEEeCCCHHH-HHHHHcCcchHhhcCCCCcEEEECCCCCH
Confidence 44566788888888843322 12222 223466778888876543
No 478
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=41.88 E-value=29 Score=31.73 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=30.0
Q ss_pred hcCcEEEeccccccccchHHHHHHHHcCCCEeeCCCC
Q psy1304 124 KKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGE 160 (184)
Q Consensus 124 ~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltGE 160 (184)
.++|+|+-|+|.|.. ...+...+++|+.-||+++-
T Consensus 90 ~gvDiVle~tG~~~s--~~~a~~~l~aGAk~V~iSap 124 (336)
T PRK13535 90 LGVDVVLDCTGVYGS--REDGEAHIAAGAKKVLFSHP 124 (336)
T ss_pred cCCCEEEEccchhhh--HHHHHHHHHcCCEEEEecCC
Confidence 589999999998843 57888999999999999854
No 479
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=41.84 E-value=57 Score=30.44 Aligned_cols=63 Identities=17% Similarity=0.097 Sum_probs=42.5
Q ss_pred HHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEeeC-C-C--ChHH-HHHHHHHhHHHHHHcCCeee
Q psy1304 119 ILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDI-T-G--EPYF-MEYMQYEYNTRAQESEVQKC 183 (184)
Q Consensus 119 L~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDl-t-G--E~~~-~~~ii~~lhe~AkaaGV~Iv 183 (184)
++++-...|++|-|+.|-. -..+++.|.+.|++.+=+ + | |..- -..++.++.+.|++.|+.++
T Consensus 58 l~~lp~~~Dlavi~vp~~~--~~~~l~e~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvl 125 (447)
T TIGR02717 58 VLEIPDPVDLAVIVVPAKY--VPQVVEECGEKGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLL 125 (447)
T ss_pred HHHCCCCCCEEEEecCHHH--HHHHHHHHHhcCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEE
Confidence 4444467899999996543 368999999999996533 1 1 2110 11234678899999999876
No 480
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.71 E-value=29 Score=31.04 Aligned_cols=83 Identities=11% Similarity=0.098 Sum_probs=50.4
Q ss_pred CCchhhhhhhCCCCC--ceeEEeeeecccccccCC-----CCCCEEEEeCCCHHHHHHHhhcCcEEEeccccccccchHH
Q psy1304 71 NPRPSAYKADAPTSN--LTRLGLLGARDCLYRENL-----IDIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYGEAV 143 (184)
Q Consensus 71 ~~r~~~~La~~~~~~--~~~iaLAGrr~~lg~~~~-----~~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~g~~V 143 (184)
-|+.+-.|.+.++-+ -.++.+-||....|.+.. .+.....|+-. ...|.+.++++|+||+++|--......
T Consensus 141 Tp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~-t~~l~~~~~~ADIVIsAvg~p~~i~~~- 218 (286)
T PRK14175 141 TPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSR-SKDMASYLKDADVIVSAVGKPGLVTKD- 218 (286)
T ss_pred cHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC-chhHHHHHhhCCEEEECCCCCcccCHH-
Confidence 455555666444311 168999998885554322 34555666653 356899999999999999854322222
Q ss_pred HHHHHHcCCCEeeCC
Q psy1304 144 VKACIEAKTHHVDIT 158 (184)
Q Consensus 144 aeACieAGthYVDlt 158 (184)
-++-|+-.||+.
T Consensus 219 ---~vk~gavVIDvG 230 (286)
T PRK14175 219 ---VVKEGAVIIDVG 230 (286)
T ss_pred ---HcCCCcEEEEcC
Confidence 234455555653
No 481
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=41.45 E-value=97 Score=27.49 Aligned_cols=74 Identities=12% Similarity=0.041 Sum_probs=50.3
Q ss_pred CCCCCceeEEeeeeccccccc-CCCCCCEEEEeCCCHHHHHHHhhcCc--EEEeccccccccchHHHHHHHHcCCCEeeC
Q psy1304 81 APTSNLTRLGLLGARDCLYRE-NLIDIPIIIADLKNESSILIMAKKCR--VILNCVGPYTWYGEAVVKACIEAKTHHVDI 157 (184)
Q Consensus 81 ~~~~~~~~iaLAGrr~~lg~~-~~~~v~~v~vDv~D~~sL~a~l~~~d--VVIN~aGPf~~~g~~VaeACieAGthYVDl 157 (184)
.+++ .+|++--.+.+.... ....++++.+|...++.+.++++..+ ++|-+.| .....=+...+++|+++|-+
T Consensus 185 ~~~~--~~Igvsv~tleea~~A~~~gaDyI~lD~~~~e~l~~~~~~~~~~i~i~AiG---GIt~~ni~~~a~~Gvd~IAv 259 (277)
T PRK08072 185 LGHM--VKIEVETETEEQVREAVAAGADIIMFDNRTPDEIREFVKLVPSAIVTEASG---GITLENLPAYGGTGVDYISL 259 (277)
T ss_pred CCCC--CEEEEEeCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHhcCCCceEEEEC---CCCHHHHHHHHHcCCCEEEE
Confidence 3445 566655433322111 22668999999889999999988654 7777777 33456677788999999988
Q ss_pred CC
Q psy1304 158 TG 159 (184)
Q Consensus 158 tG 159 (184)
+-
T Consensus 260 g~ 261 (277)
T PRK08072 260 GF 261 (277)
T ss_pred Ch
Confidence 54
No 482
>PRK08291 ectoine utilization protein EutC; Validated
Probab=41.19 E-value=3.5 Score=36.63 Aligned_cols=74 Identities=11% Similarity=0.168 Sum_probs=42.3
Q ss_pred hhhhhCCCCCceeEEeeeecccccccCCC------CCCEEEEeCCCHHHHHHHhhcCcEEEeccccccccchHHHHH-HH
Q psy1304 76 AYKADAPTSNLTRLGLLGARDCLYRENLI------DIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYGEAVVKA-CI 148 (184)
Q Consensus 76 ~~La~~~~~~~~~iaLAGrr~~lg~~~~~------~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~g~~VaeA-Ci 148 (184)
.+|+...+- -+|.+.+|+.+..+.-.. .+++.. .+ +++++++++|+||||. |- ..+++++ .+
T Consensus 149 ~al~~~~~~--~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~--~~---d~~~al~~aDiVi~aT-~s---~~p~i~~~~l 217 (330)
T PRK08291 149 EALTLVRPI--REVRVWARDAAKAEAYAADLRAELGIPVTV--AR---DVHEAVAGADIIVTTT-PS---EEPILKAEWL 217 (330)
T ss_pred HHHHhcCCC--CEEEEEcCCHHHHHHHHHHHhhccCceEEE--eC---CHHHHHccCCEEEEee-CC---CCcEecHHHc
Confidence 444444433 477788877543321111 122222 22 3567888999999997 33 2466655 47
Q ss_pred HcCCCEeeCCCC
Q psy1304 149 EAKTHHVDITGE 160 (184)
Q Consensus 149 eAGthYVDltGE 160 (184)
+.|+|-..+..+
T Consensus 218 ~~g~~v~~vg~d 229 (330)
T PRK08291 218 HPGLHVTAMGSD 229 (330)
T ss_pred CCCceEEeeCCC
Confidence 888887666443
No 483
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.12 E-value=35 Score=30.55 Aligned_cols=63 Identities=10% Similarity=0.172 Sum_probs=41.7
Q ss_pred CCchhhhhhhCC----CCCceeEEeeeecccccccCC-----CCCCEEEEeCCCHHHHHHHhhcCcEEEeccccc
Q psy1304 71 NPRPSAYKADAP----TSNLTRLGLLGARDCLYRENL-----IDIPIIIADLKNESSILIMAKKCRVILNCVGPY 136 (184)
Q Consensus 71 ~~r~~~~La~~~----~~~~~~iaLAGrr~~lg~~~~-----~~v~~v~vDv~D~~sL~a~l~~~dVVIN~aGPf 136 (184)
-|+.+-.|.+.+ .+ .++++-||+...|.+.. .+.....|+.. ...|...++++|+||.++|--
T Consensus 141 Tp~aii~lL~~~~i~l~G--k~vvViGrs~iVGkPla~lL~~~~atVt~~hs~-t~~l~~~~~~ADIVV~avG~~ 212 (285)
T PRK14189 141 TPYGVMKMLESIGIPLRG--AHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK-TRDLAAHTRQADIVVAAVGKR 212 (285)
T ss_pred CHHHHHHHHHHcCCCCCC--CEEEEECCCCccHHHHHHHHHHCCCEEEEecCC-CCCHHHHhhhCCEEEEcCCCc
Confidence 345555555443 45 79999999887665322 33444455543 346899999999999999833
No 484
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=41.10 E-value=1.9e+02 Score=27.03 Aligned_cols=72 Identities=19% Similarity=0.264 Sum_probs=44.7
Q ss_pred CCCCEEEEeCCCH--HHHHHHhh-------cCcEEE-eccccccccchHHHHHHHHcCCCEeeCC-C-------------
Q psy1304 104 IDIPIIIADLKNE--SSILIMAK-------KCRVIL-NCVGPYTWYGEAVVKACIEAKTHHVDIT-G------------- 159 (184)
Q Consensus 104 ~~v~~v~vDv~D~--~sL~a~l~-------~~dVVI-N~aGPf~~~g~~VaeACieAGthYVDlt-G------------- 159 (184)
..++.+.+|..+. ..+.++++ +..+++ |++ ...-++.++++|++.|+++ |
T Consensus 235 aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~------t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~ 308 (450)
T TIGR01302 235 AGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVA------TAEQAKALIDAGADGLRVGIGPGSICTTRIVAGV 308 (450)
T ss_pred hCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCC------CHHHHHHHHHhCCCEEEECCCCCcCCccceecCC
Confidence 5688999999432 22333332 234444 332 3577899999999999865 1
Q ss_pred -ChHHHHHHHHHhHHHHHHcCCeee
Q psy1304 160 -EPYFMEYMQYEYNTRAQESEVQKC 183 (184)
Q Consensus 160 -E~~~~~~ii~~lhe~AkaaGV~Iv 183 (184)
-+.+ . .+.+..+.+++.|++++
T Consensus 309 g~p~~-~-~i~~~~~~~~~~~vpvi 331 (450)
T TIGR01302 309 GVPQI-T-AVYDVAEYAAQSGIPVI 331 (450)
T ss_pred CccHH-H-HHHHHHHHHhhcCCeEE
Confidence 1222 2 23567777888888876
No 485
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=41.06 E-value=29 Score=31.59 Aligned_cols=33 Identities=18% Similarity=0.428 Sum_probs=28.8
Q ss_pred cCcEEEeccccccccchHHHHHHHHcCCCEeeCCC
Q psy1304 125 KCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITG 159 (184)
Q Consensus 125 ~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltG 159 (184)
++|+|+-|.|.|.. ...+.+.+++|+.-||+++
T Consensus 90 gvDiVle~tG~~~s--~~~a~~hl~~Gak~V~iSa 122 (327)
T TIGR01534 90 GVDIVIECTGKFRD--KEKLEGHLEAGAKKVLISA 122 (327)
T ss_pred CCCEEEEccchhhc--HHHHHHHhhCCCEEEEeCC
Confidence 89999999998844 4678899999999999995
No 486
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=40.97 E-value=38 Score=30.03 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=24.9
Q ss_pred hHHHHHHHHcCCCEeeCCCChHHHHHH
Q psy1304 141 EAVVKACIEAKTHHVDITGEPYFMEYM 167 (184)
Q Consensus 141 ~~VaeACieAGthYVDltGE~~~~~~i 167 (184)
..+++||-..|..|||+.-+++.++.+
T Consensus 30 ~~i~~AA~~ggAt~vDIAadp~LV~~~ 56 (242)
T PF04481_consen 30 AAIVKAAEIGGATFVDIAADPELVKLA 56 (242)
T ss_pred HHHHHHHHccCCceEEecCCHHHHHHH
Confidence 789999999999999999999998865
No 487
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=40.75 E-value=27 Score=25.74 Aligned_cols=46 Identities=9% Similarity=0.088 Sum_probs=32.4
Q ss_pred EEEeCCCHHHHHHH----h-hcCcEEEecccccc--ccchHHHHHHHHcCCCE
Q psy1304 109 IIADLKNESSILIM----A-KKCRVILNCVGPYT--WYGEAVVKACIEAKTHH 154 (184)
Q Consensus 109 v~vDv~D~~sL~a~----l-~~~dVVIN~aGPf~--~~g~~VaeACieAGthY 154 (184)
+.+|....+.+.+. + ++.+||.--.||+. .....+.++|.+.|+++
T Consensus 62 vvVE~t~~~~~~~~~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~ 114 (117)
T PF03447_consen 62 VVVECTSSEAVAEYYEKALERGKHVVTANKGALADEALYEELREAARKNGVRI 114 (117)
T ss_dssp EEEE-SSCHHHHHHHHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EE
T ss_pred EEEECCCchHHHHHHHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEE
Confidence 44455555544443 3 35899999999999 78899999999999985
No 488
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=40.66 E-value=43 Score=29.08 Aligned_cols=34 Identities=15% Similarity=0.104 Sum_probs=21.9
Q ss_pred hhcCcEEEeccccccccchHHHHHHHHcCCCEee
Q psy1304 123 AKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVD 156 (184)
Q Consensus 123 l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVD 156 (184)
++.-+++|++..-.......+++.+.+.|++|+|
T Consensus 84 l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~d 117 (301)
T PRK09599 84 LSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVD 117 (301)
T ss_pred CCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEe
Confidence 3345677777543334445677777788888888
No 489
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=40.30 E-value=48 Score=29.07 Aligned_cols=48 Identities=19% Similarity=0.199 Sum_probs=35.9
Q ss_pred cccccccc-hHHHHHHHHcCCCEeeCCCChHHHHHHHHHhHHHHHHcCCeee
Q psy1304 133 VGPYTWYG-EAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVQKC 183 (184)
Q Consensus 133 aGPf~~~g-~~VaeACieAGthYVDltGE~~~~~~ii~~lhe~AkaaGV~Iv 183 (184)
.=|++.+| ++.++.|.++|++.+=+-+.+. ++. .+|.+.+++.|+..+
T Consensus 100 ~N~i~~~G~e~F~~~~~~aGvdgviipDLP~--ee~-~~~~~~~~~~gi~~I 148 (263)
T CHL00200 100 YNPVLHYGINKFIKKISQAGVKGLIIPDLPY--EES-DYLISVCNLYNIELI 148 (263)
T ss_pred ccHHHHhCHHHHHHHHHHcCCeEEEecCCCH--HHH-HHHHHHHHHcCCCEE
Confidence 33445566 7899999999999877766654 444 689999999997654
No 490
>PHA02709 hypothetical protein; Provisional
Probab=40.20 E-value=7 Score=25.76 Aligned_cols=15 Identities=53% Similarity=0.782 Sum_probs=11.8
Q ss_pred HhhcceEEEEeccee
Q psy1304 17 ILFEGEYLIFSKGTV 31 (184)
Q Consensus 17 ~~~~~~~~~~~~~~~ 31 (184)
-||-.+||||||-.+
T Consensus 12 klf~dkyfi~skivv 26 (44)
T PHA02709 12 KLFTDKYFIFSKIVV 26 (44)
T ss_pred HHHhhhhhhhhhhhh
Confidence 378889999999644
No 491
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=40.04 E-value=65 Score=23.68 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=29.6
Q ss_pred HHHHHHHhh--cCcEEEecccccc--ccchHHHHHHHHcCCCEe
Q psy1304 116 ESSILIMAK--KCRVILNCVGPYT--WYGEAVVKACIEAKTHHV 155 (184)
Q Consensus 116 ~~sL~a~l~--~~dVVIN~aGPf~--~~g~~VaeACieAGthYV 155 (184)
...+.++++ +.|+|||...+.. ..|..+-++|++.|++|+
T Consensus 56 ~~~i~~~i~~~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~ 99 (110)
T cd01424 56 RPNIVDLIKNGEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYF 99 (110)
T ss_pred chhHHHHHHcCCeEEEEECCCCCccCccHHHHHHHHHHhCCCEE
Confidence 355667766 4899999854332 136789999999999988
No 492
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=39.91 E-value=38 Score=31.24 Aligned_cols=97 Identities=7% Similarity=0.028 Sum_probs=52.0
Q ss_pred cccceeeecccccCCCCCCCchhhhhhhCCCCCceeEEeeeecccccccCCCCCCEEEEeCCCHHHHHHHhhcCcEEEec
Q psy1304 53 FRGQTLSVQDKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRENLIDIPIIIADLKNESSILIMAKKCRVILNC 132 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~r~~~~La~~~~~~~~~iaLAGrr~~lg~~~~~~v~~v~vDv~D~~sL~a~l~~~dVVIN~ 132 (184)
+.|+++.|-|-=.-|+. ++.+|.... - .+|.+..|+.+...+....+....+ +.+++.+.+.++|+||+|
T Consensus 178 l~~~~VlViGaG~iG~~----~a~~L~~~G-~--~~V~v~~rs~~ra~~la~~~g~~~i---~~~~l~~~l~~aDvVi~a 247 (417)
T TIGR01035 178 LKGKKALLIGAGEMGEL----VAKHLLRKG-V--GKILIANRTYERAEDLAKELGGEAV---KFEDLEEYLAEADIVISS 247 (417)
T ss_pred ccCCEEEEECChHHHHH----HHHHHHHCC-C--CEEEEEeCCHHHHHHHHHHcCCeEe---eHHHHHHHHhhCCEEEEC
Confidence 67888888773222332 445555432 1 3677777764432111111221122 235678888999999999
Q ss_pred cc-cccccchHHHHHHHHcC---CCEeeCCC
Q psy1304 133 VG-PYTWYGEAVVKACIEAK---THHVDITG 159 (184)
Q Consensus 133 aG-Pf~~~g~~VaeACieAG---thYVDltG 159 (184)
.| |-.......++.+.... .-.+|++.
T Consensus 248 T~s~~~ii~~e~l~~~~~~~~~~~~viDla~ 278 (417)
T TIGR01035 248 TGAPHPIVSKEDVERALRERTRPLFIIDIAV 278 (417)
T ss_pred CCCCCceEcHHHHHHHHhcCCCCeEEEEeCC
Confidence 86 22223444555554422 23667764
No 493
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=39.57 E-value=38 Score=27.01 Aligned_cols=101 Identities=17% Similarity=0.197 Sum_probs=52.0
Q ss_pred ccccceeeecccccCCCCCCCchhhhhhh-CCCCCceeEEeeeecccccccCCCCCCEEEEeCCCHHHHHHHhh------
Q psy1304 52 PFRGQTLSVQDKIRPGRGSNPRPSAYKAD-APTSNLTRLGLLGARDCLYRENLIDIPIIIADLKNESSILIMAK------ 124 (184)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~r~~~~La~-~~~~~~~~iaLAGrr~~lg~~~~~~v~~v~vDv~D~~sL~a~l~------ 124 (184)
+..|.|..--....|++..-.|+-..+.. ..|+ +=+...|.|+...... ...+-.. .+-+++...++
T Consensus 48 Gv~G~tt~~~~~~~~~~~~l~~l~~~l~~~~~pd--~vii~lGtND~~~~~~-~~~~~~~---~~l~~lv~~i~~~~~~~ 121 (208)
T cd01839 48 GLPGRTTVLDDPFFPGRNGLTYLPQALESHSPLD--LVIIMLGTNDLKSYFN-LSAAEIA---QGLGALVDIIRTAPIEP 121 (208)
T ss_pred CcCCcceeccCccccCcchHHHHHHHHHhCCCCC--EEEEeccccccccccC-CCHHHHH---HHHHHHHHHHHhccccc
Confidence 34455543222233444544566666765 6788 7677777887653100 0111000 11122233332
Q ss_pred ---cCcEEEeccccc------------------cccchHHHHHHHHcCCCEeeCC
Q psy1304 125 ---KCRVILNCVGPY------------------TWYGEAVVKACIEAKTHHVDIT 158 (184)
Q Consensus 125 ---~~dVVIN~aGPf------------------~~~g~~VaeACieAGthYVDlt 158 (184)
++.+++-+..|. ..+...+-+.|-+.+++|+|+.
T Consensus 122 ~~~~~~iil~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~iD~~ 176 (208)
T cd01839 122 GMPAPKILIVAPPPIRTPKGSLAGKFAGAEEKSKGLADAYRALAEELGCHFFDAG 176 (208)
T ss_pred cCCCCCEEEEeCCccCccccchhhhhccHHHHHHHHHHHHHHHHHHhCCCEEcHH
Confidence 355777665443 0122446677999999999974
No 494
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=39.03 E-value=2e+02 Score=23.22 Aligned_cols=54 Identities=19% Similarity=0.189 Sum_probs=31.1
Q ss_pred CCCCEEEEeCCCHH---HHHHHhhcCc-EEEeccccccccchHHHHHHHHcCCCEeeCCCC
Q psy1304 104 IDIPIIIADLKNES---SILIMAKKCR-VILNCVGPYTWYGEAVVKACIEAKTHHVDITGE 160 (184)
Q Consensus 104 ~~v~~v~vDv~D~~---sL~a~l~~~d-VVIN~aGPf~~~g~~VaeACieAGthYVDltGE 160 (184)
..+.+++++..++. .+..+.+.+. +.|. +|+... ..-++.|+++|.+++.+.+.
T Consensus 28 ~G~~~vev~~~~~~~~~~i~~l~~~~~~~~iG-ag~v~~--~~~~~~a~~~Ga~~i~~p~~ 85 (190)
T cd00452 28 GGIRAIEITLRTPGALEAIRALRKEFPEALIG-AGTVLT--PEQADAAIAAGAQFIVSPGL 85 (190)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHCCCCEEE-EEeCCC--HHHHHHHHHcCCCEEEcCCC
Confidence 45677777766553 4444555543 4443 354432 23457777788888776554
No 495
>PF02515 CoA_transf_3: CoA-transferase family III; InterPro: IPR003673 CoA-transferases are found in organisms from all kingdoms of life. They catalyse reversible transfer reactions of coenzyme A groups from CoA-thioesters to free acids. There are at least three families of CoA-transferases, which differ in sequence and reaction mechanism: Family I consists of CoA-transferases for 3-oxoacids (2.8.3.5 from EC, 2.8.3.6 from EC), short-chain fatty acids (2.8.3.8 from EC, 2.8.3.9 from EC) and glutaconate (2.8.3.12 from EC). Most use succinyl-CoA or acetyl-CoA as CoA donors. Family II consists of the homodimeric alpha-subunits of citrate lyase and citramalate lyase (2.8.3.10 from EC, 2.8.3.11 from EC). These enzymes catalyse the transfer of acyl carrier protein (ACP) with a covalently bound CoA derivative, but can accept free CoA thioesters as well. Family III consists of formyl-CoA:oxalate CoA-transferase [], succinyl-CoA:(R)-benzylsuccinate CoA-transferase [], (E)-cinnamoyl-CoA:(R)-phenyllactate CoA-transferase [], and butyrobetainyl-CoA:(R)-carnitine CoA-transferase []. These CoA-transferases occur in prokaryotes and eukaryotes, and catalyse CoA-transfer reactions in a highly substrate- and stereo-specific manner []. This entry represents family III CoA-transferases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1PT7_B 1PT8_A 1PQY_A 1Q7E_A 1Q6Y_A 1PT5_A 1XK6_B 1XK7_C 1XVT_A 1XVU_A ....
Probab=38.92 E-value=46 Score=27.18 Aligned_cols=53 Identities=17% Similarity=0.202 Sum_probs=32.1
Q ss_pred EEEeCCCHH---HHHHHhhcCcEEEeccccccc--cch-HHHHHHHHcCCCEeeCCCCh
Q psy1304 109 IIADLKNES---SILIMAKKCRVILNCVGPYTW--YGE-AVVKACIEAKTHHVDITGEP 161 (184)
Q Consensus 109 v~vDv~D~~---sL~a~l~~~dVVIN~aGPf~~--~g~-~VaeACieAGthYVDltGE~ 161 (184)
+.+|+.+++ .+.++++.+||||+.--|=.. .|- .-.-..+.-+.-|+.++|-.
T Consensus 1 V~lDl~~~~gr~~l~~L~~~ADV~i~n~rpg~~~~lGl~~~~l~~~nP~LV~~~isgfG 59 (191)
T PF02515_consen 1 VALDLKSPEGRAALRRLLATADVVIENFRPGVLERLGLDYEALRAINPRLVYCSISGFG 59 (191)
T ss_dssp EEEETTSHHHHHHHHHHHHT-SEEEEESSTTHHHHTT-SHHHHHHH-TT-EEEEEESS-
T ss_pred CEeeCcCHHHHHHHHHHHHhCCEEEECCchhhhHhcCCCHHHHHhhCCCCeEEEEEeec
Confidence 467877655 677889999999999866432 221 11112556677799998743
No 496
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=38.59 E-value=38 Score=32.39 Aligned_cols=50 Identities=14% Similarity=0.135 Sum_probs=37.1
Q ss_pred EEEEeCCCHHHHHHHhhcCcEEEeccccccccchHHHHHHHHcCCCEeeCCC
Q psy1304 108 IIIADLKNESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITG 159 (184)
Q Consensus 108 ~v~vDv~D~~sL~a~l~~~dVVIN~aGPf~~~g~~VaeACieAGthYVDltG 159 (184)
+...+..||+.+.=--.++|+||-|.|.|.. ...+...+++|+.-||++.
T Consensus 148 I~V~~~~dp~~l~W~~~gVDiViE~TG~f~s--~e~a~~hl~aGAkkV~iSA 197 (442)
T PLN02237 148 IKVVSNRDPLKLPWAELGIDIVIEGTGVFVD--GPGAGKHIQAGAKKVIITA 197 (442)
T ss_pred EEEEEcCCchhCChhhcCCCEEEEccChhhh--HHHHHHHHhCCCEEEEECC
Confidence 4444555665554223589999999999854 4778889999999999993
No 497
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=38.45 E-value=87 Score=30.08 Aligned_cols=51 Identities=12% Similarity=0.010 Sum_probs=30.5
Q ss_pred CCEEEEeCCCHHHHHHHh-------hcCcEEEeccccccccchHHHHHHHHcCCCEee
Q psy1304 106 IPIIIADLKNESSILIMA-------KKCRVILNCVGPYTWYGEAVVKACIEAKTHHVD 156 (184)
Q Consensus 106 v~~v~vDv~D~~sL~a~l-------~~~dVVIN~aGPf~~~g~~VaeACieAGthYVD 156 (184)
.+.+..=+.|.+.+++++ +.-|+||+|---+........+.|.+.|+||+|
T Consensus 73 ~dvIi~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fld 130 (493)
T PLN02350 73 PRSVIILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLG 130 (493)
T ss_pred CCEEEEECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEe
Confidence 444444454444444443 345677777544445556777777778888887
No 498
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=38.44 E-value=42 Score=28.89 Aligned_cols=56 Identities=18% Similarity=0.076 Sum_probs=33.8
Q ss_pred cCcEEEeccccccccc---------hHHHHHHHHcC-CCEeeCCCChHHHHHHHHHhHHHHHHcCCeee
Q psy1304 125 KCRVILNCVGPYTWYG---------EAVVKACIEAK-THHVDITGEPYFMEYMQYEYNTRAQESEVQKC 183 (184)
Q Consensus 125 ~~dVVIN~aGPf~~~g---------~~VaeACieAG-thYVDltGE~~~~~~ii~~lhe~AkaaGV~Iv 183 (184)
+..+++.+-.+. .-| ..+.+.+++.| ++|||+==.. -.+...++-+.+++.|..+|
T Consensus 74 ~~PiI~T~R~~~-eGG~~~~~~~~~~~ll~~~~~~~~~d~vDiEl~~--~~~~~~~l~~~~~~~~~kvI 139 (253)
T PRK02412 74 GKPLLFTFRTAK-EGGEIALSDEEYLALIKAVIKSGLPDYIDVELFS--GKDVVKEMVAFAHEHGVKVV 139 (253)
T ss_pred CCcEEEEECChh-hCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeccC--ChHHHHHHHHHHHHcCCEEE
Confidence 457788776332 212 35788899999 8999993221 12222455566666676654
No 499
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=37.89 E-value=60 Score=25.93 Aligned_cols=40 Identities=10% Similarity=-0.002 Sum_probs=29.0
Q ss_pred HHHHHHhhc--CcEEEeccccccc-----cchHHHHHHHHcCCCEee
Q psy1304 117 SSILIMAKK--CRVILNCVGPYTW-----YGEAVVKACIEAKTHHVD 156 (184)
Q Consensus 117 ~sL~a~l~~--~dVVIN~aGPf~~-----~g~~VaeACieAGthYVD 156 (184)
..+..+++. .++|||+..|... .+..+-++|++.++.|+=
T Consensus 65 ~~i~~~I~~g~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~T 111 (142)
T PRK05234 65 QQIGALIAEGKIDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVAT 111 (142)
T ss_pred hhHHHHHHcCceeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEEc
Confidence 446666654 8999999744422 246889999999999864
No 500
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=37.86 E-value=1.3e+02 Score=26.90 Aligned_cols=70 Identities=13% Similarity=0.017 Sum_probs=46.9
Q ss_pred eeEEeeeeccccccc-CCCCCCEEEEeCCCHHHHHHHhhc--CcEEEeccccccccchHHHHHHHHcCCCEeeCCC
Q psy1304 87 TRLGLLGARDCLYRE-NLIDIPIIIADLKNESSILIMAKK--CRVILNCVGPYTWYGEAVVKACIEAKTHHVDITG 159 (184)
Q Consensus 87 ~~iaLAGrr~~lg~~-~~~~v~~v~vDv~D~~sL~a~l~~--~dVVIN~aGPf~~~g~~VaeACieAGthYVDltG 159 (184)
.||.+=-.+-+...+ .....+.+++|-.+++++.++++- ....+.+.| .....=++.=+.+|++|+.++-
T Consensus 194 ~kIeVEv~slee~~ea~~~gaDiImLDn~s~e~l~~av~~~~~~~~leaSG---gI~~~ni~~yA~tGVD~Is~ga 266 (281)
T PRK06543 194 THVEVEVDRLDQIEPVLAAGVDTIMLDNFSLDDLREGVELVDGRAIVEASG---NVNLNTVGAIASTGVDVISVGA 266 (281)
T ss_pred CcEEEEeCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHhCCCeEEEEEC---CCCHHHHHHHHhcCCCEEEeCc
Confidence 566664333221111 225689999999999999998874 356777777 3344445555679999999854
Done!