RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1304
(184 letters)
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 49.0 bits (117), Expect = 2e-08
Identities = 11/72 (15%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 105 DIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFM 164
+ D K+E+ + +++ P+ + + KA A H+ D+T +
Sbjct: 49 GVATKQVDAKDEAGLAKALGGFDAVISAA-PF-FLTPIIAKAAKAAGAHYFDLTEDVAAT 106
Query: 165 EYMQYEYNTRAQ 176
++ +Q
Sbjct: 107 NAVR-ALVEDSQ 117
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase,
oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
PDB: 3a63_A* 3abi_A*
Length = 365
Score = 42.6 bits (100), Expect = 2e-05
Identities = 14/75 (18%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 106 IPIIIADLKNESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFME 165
+ D N ++ + K+ +++ + + G +KA I++K VD++ P
Sbjct: 58 ATPLKVDASNFDKLVEVMKEFELVIGALPGF--LGFKSIKAAIKSKVDMVDVSFMPENPL 115
Query: 166 YMQYEYNTRAQESEV 180
E A++++V
Sbjct: 116 ----ELRDEAEKAQV 126
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.0 bits (95), Expect = 1e-04
Identities = 29/174 (16%), Positives = 57/174 (32%), Gaps = 35/174 (20%)
Query: 4 RITAV-SLKPLLTQILFEGEYLI------FSKGTVTAKVLSSRK--QRKEDRI-----GE 49
R+ L+ L + L + ++ K V V S K + + +I
Sbjct: 133 RLQPYLKLRQALLE-LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 50 SQPFRG-----QTLSVQ-DKIRPGRGSNPRPSAYKADAPTSNLTRLGLLGARDCLYRENL 103
Q L Q D R + + + + L RL L ++ Y L
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL--LKSKP--YENCL 247
Query: 104 IDIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDI 157
+ ++ +++N + C+++L T + V A T H+ +
Sbjct: 248 L----VLLNVQNAKAWNAFNLSCKILL------TTRFKQVTDFLSAATTTHISL 291
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.002
Identities = 27/173 (15%), Positives = 51/173 (29%), Gaps = 69/173 (39%)
Query: 7 AVSLKPL--LTQILFEGEYLIF---------------------SKGTVTAKVLSSRKQRK 43
+S PL + Q+ Y++ S+G VTA ++ +
Sbjct: 235 PISC-PLIGVIQL---AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE 290
Query: 44 E-----DR-------IG-ESQ-PFRGQTLS---VQDKIRPGRGSNPRPSAYKADAPTSNL 86
+ IG + +L ++D + G P P
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV-PSP------------ 337
Query: 87 TRLGLLGARDCLYRENLID-IPIIIADLKNESSI---LIMAKKCRVILNCVGP 135
+L + L +E + D + + L + L+ K V+ GP
Sbjct: 338 ----MLSISN-LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV---SGP 382
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin
carboxylase, carboxyltransferase, BT domain, BCCP DOM
ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Length = 675
Score = 28.4 bits (64), Expect = 1.6
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 5/22 (22%)
Query: 155 VDITGEPYFMEYMQYEYNTRAQ 176
+D G+ +FME M NTR Q
Sbjct: 304 LDERGQFFFME-M----NTRLQ 320
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein;
HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Length = 539
Score = 27.3 bits (59), Expect = 3.9
Identities = 7/53 (13%), Positives = 17/53 (32%), Gaps = 8/53 (15%)
Query: 67 GRGSNPRPSAYKADAPTSNLTRLGL--------LGARDCLYRENLIDIPIIIA 111
G P+ S + ++ L + +GA + +Y+ +
Sbjct: 1 GTTGMPQYSTFHSENRDWTFNHLTVHRRTGAVYVGAINRVYKLTGNLTIQVAH 53
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex,
biotin-dependent carboxylase, ligase; HET: BTI; 3.20A
{Ruegeria pomeroyi}
Length = 681
Score = 26.9 bits (60), Expect = 4.4
Identities = 10/22 (45%), Positives = 11/22 (50%), Gaps = 5/22 (22%)
Query: 155 VDITGEPYFMEYMQYEYNTRAQ 176
VD YF+E M NTR Q
Sbjct: 278 VDGQKNFYFLE-M----NTRLQ 294
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine
kinase, transferase; 1.80A {Rattus norvegicus} SCOP:
d.144.1.7 PDB: 3fpq_A
Length = 290
Score = 26.5 bits (59), Expect = 5.7
Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 13/73 (17%)
Query: 105 DIPIIIADLKNESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFM 164
PII DLK +I I V + +G A ++ + + G P FM
Sbjct: 149 TPPIIHRDLKC-DNIFITGPTGSVKIGDLGL----------ATLKRASFAKAVIGTPEFM 197
Query: 165 --EYMQYEYNTRA 175
E + +Y+
Sbjct: 198 APEMYEEKYDESV 210
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Length = 135
Score = 25.3 bits (55), Expect = 9.7
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 19 FEGEYLIFSKGTVTAKVLSSRKQRKEDR 46
FE Y + G +SR+QRK+ +
Sbjct: 85 FEPTYRLVRYGLAEKVEKASRQQRKQKK 112
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.394
Gapped
Lambda K H
0.267 0.0741 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,686,301
Number of extensions: 150435
Number of successful extensions: 252
Number of sequences better than 10.0: 1
Number of HSP's gapped: 251
Number of HSP's successfully gapped: 15
Length of query: 184
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 96
Effective length of database: 4,244,745
Effective search space: 407495520
Effective search space used: 407495520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.6 bits)