BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13041
(81 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RJO|A Chain A, Crystal Structure Of Erap1 Peptide Binding Domain
Length = 419
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 42/65 (64%)
Query: 8 IRSQDYFTVIVMVAGNPKGLPVAWDYVKKNWDYLLKRFGLNHRVFGRIIPSVCGKFTTQE 67
I++Q++ ++ ++ NP G P+AW +++KNW+ L+++F L ++ +F+T+
Sbjct: 299 IKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRT 358
Query: 68 RLDEV 72
RL+EV
Sbjct: 359 RLEEV 363
>pdb|3MDJ|A Chain A, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|B Chain B, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|C Chain C, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
Length = 921
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 42/65 (64%)
Query: 8 IRSQDYFTVIVMVAGNPKGLPVAWDYVKKNWDYLLKRFGLNHRVFGRIIPSVCGKFTTQE 67
I++Q++ ++ ++ NP G P+AW +++KNW+ L+++F L ++ +F+T+
Sbjct: 791 IKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRT 850
Query: 68 RLDEV 72
RL+EV
Sbjct: 851 RLEEV 855
>pdb|2YD0|A Chain A, Crystal Structure Of The Soluble Domain Of Human
Endoplasmic Reticulum Aminopeptidase 1 Erap1
Length = 897
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 42/65 (64%)
Query: 8 IRSQDYFTVIVMVAGNPKGLPVAWDYVKKNWDYLLKRFGLNHRVFGRIIPSVCGKFTTQE 67
I++Q++ ++ ++ NP G P+AW +++KNW+ L+++F L ++ +F+T+
Sbjct: 782 IKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRT 841
Query: 68 RLDEV 72
RL+EV
Sbjct: 842 RLEEV 846
>pdb|3QNF|A Chain A, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|B Chain B, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|C Chain C, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
Length = 954
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 42/65 (64%)
Query: 8 IRSQDYFTVIVMVAGNPKGLPVAWDYVKKNWDYLLKRFGLNHRVFGRIIPSVCGKFTTQE 67
I++Q++ ++ ++ NP G P+AW +++KNW+ L+++F L ++ +F+T+
Sbjct: 833 IKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRT 892
Query: 68 RLDEV 72
RL+EV
Sbjct: 893 RLEEV 897
>pdb|3SE6|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
pdb|3SE6|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
Length = 967
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 1 MAKDEKNIRSQDYFTVIVMVAGNPKGLPVAWDYVKKNWDYLLKRFGLNHRVFGRIIPSVC 60
+ + K I++Q+ ++ +A PKG +AWD+V++NW +LLK+F L II
Sbjct: 843 LGMEGKVIKTQNLAALLHAIARRPKGQQLAWDFVRENWTHLLKKFDLGSYDIRMIISGTT 902
Query: 61 GKFTTQERLDEV 72
F+++++L EV
Sbjct: 903 AHFSSKDKLQEV 914
>pdb|4E36|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
pdb|4E36|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
Length = 967
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 1 MAKDEKNIRSQDYFTVIVMVAGNPKGLPVAWDYVKKNWDYLLKRFGLNHRVFGRIIPSVC 60
+ + K I++Q+ ++ +A PKG +AWD+V++NW +LLK+F L II
Sbjct: 843 LGMEGKVIKTQNLAALLHAIARRPKGQQLAWDFVRENWTHLLKKFDLGSYDIRMIISGTT 902
Query: 61 GKFTTQERLDEV 72
F+++++L EV
Sbjct: 903 AHFSSKDKLQEV 914
>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Poly- Alanine
Length = 908
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%)
Query: 8 IRSQDYFTVIVMVAGNPKGLPVAWDYVKKNWDYLLKRFGLNHRVFGRIIPSVCGKFTTQE 67
IR QD + I +A N G P+AWD+V+ NW L + +G F +I V +F+++
Sbjct: 789 IRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFSSEF 848
Query: 68 RLDEVSEKSLKNL 80
L ++ + N+
Sbjct: 849 ELQQLEQFKKNNM 861
>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Alanine
pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Bestatin
Length = 909
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%)
Query: 8 IRSQDYFTVIVMVAGNPKGLPVAWDYVKKNWDYLLKRFGLNHRVFGRIIPSVCGKFTTQE 67
IR QD + I +A N G P+AWD+V+ NW L + +G F +I V +F+++
Sbjct: 790 IRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFSSEF 849
Query: 68 RLDEVSEKSLKNL 80
L ++ + N+
Sbjct: 850 ELQQLEQFKKNNM 862
>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Cleaved Poly-Alanine
pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Substance P
Length = 908
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%)
Query: 8 IRSQDYFTVIVMVAGNPKGLPVAWDYVKKNWDYLLKRFGLNHRVFGRIIPSVCGKFTTQE 67
IR QD + I +A N G P+AWD+V+ NW L + +G F +I V +F+++
Sbjct: 789 IRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFSSEF 848
Query: 68 RLDEVSEKSLKNL 80
L ++ + N+
Sbjct: 849 ELQQLEQFKKNNM 861
>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
pdb|4F5C|B Chain B, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
Length = 959
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%)
Query: 8 IRSQDYFTVIVMVAGNPKGLPVAWDYVKKNWDYLLKRFGLNHRVFGRIIPSVCGKFTTQE 67
IR QD + I +A N G P+AWD+V+ NW L + +G F +I V +F+++
Sbjct: 833 IRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFSSEF 892
Query: 68 RLDEVSEKSLKNL 80
L ++ + N+
Sbjct: 893 ELQQLEQFKKNNM 905
>pdb|4FYQ|A Chain A, Human Aminopeptidase N (Cd13)
pdb|4FYR|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Bestatin
pdb|4FYS|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Angiotensin
Iv
pdb|4FYT|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Amastatin
Length = 903
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%)
Query: 8 IRSQDYFTVIVMVAGNPKGLPVAWDYVKKNWDYLLKRFGLNHRVFGRIIPSVCGKFTTQE 67
IR QD + I+ + N G + WD+V+ NW L +G F +I +V +F+T+
Sbjct: 790 IRKQDATSTIISITNNVIGQGLVWDFVQSNWKKLFNDYGGGSFSFSNLIQAVTRRFSTEY 849
Query: 68 RLDEVSE 74
L ++ +
Sbjct: 850 ELQQLEQ 856
>pdb|3LVJ|A Chain A, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 1)
pdb|3LVJ|B Chain B, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 1)
pdb|3LVK|A Chain A, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 2)
pdb|3LVL|B Chain B, Crystal Structure Of E.Coli Iscs-Iscu Complex
pdb|3LVM|A Chain A, Crystal Structure Of E.Coli Iscs
pdb|3LVM|B Chain B, Crystal Structure Of E.Coli Iscs
Length = 423
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 40 YLLKRFGLNHRVFGRIIPSVCGKFTTQERLD---EVSEKSLKNL 80
Y+L+ GLN + I G+FTT+E +D E+ KS+ L
Sbjct: 356 YVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRL 399
>pdb|1P3W|B Chain B, X-Ray Crystal Structure Of E. Coli Iscs
pdb|1P3W|A Chain A, X-Ray Crystal Structure Of E. Coli Iscs
Length = 404
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 40 YLLKRFGLNHRVFGRIIPSVCGKFTTQERLD---EVSEKSLKNL 80
Y+L+ GLN + I G+FTT+E +D E+ KS+ L
Sbjct: 337 YVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRL 380
>pdb|3IJ6|A Chain A, Crystal Structure Of An Uncharacterized Metal-Dependent
Hydrolase From Lactobacillus Acidophilus
pdb|3IJ6|B Chain B, Crystal Structure Of An Uncharacterized Metal-Dependent
Hydrolase From Lactobacillus Acidophilus
pdb|3IJ6|C Chain C, Crystal Structure Of An Uncharacterized Metal-Dependent
Hydrolase From Lactobacillus Acidophilus
pdb|3IJ6|D Chain D, Crystal Structure Of An Uncharacterized Metal-Dependent
Hydrolase From Lactobacillus Acidophilus
Length = 312
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 16/68 (23%)
Query: 4 DEKNIRSQDYFTVIVMVAGNPKGLPVAWDYVKKNWDYLLKRFGLNHRVFGR-----IIPS 58
DEK+ + F V + GN L +A DY +G++H +FG ++PS
Sbjct: 223 DEKHAQDFKKFYVDTAILGNTPALQLAIDY-----------YGIDHVLFGTDAPFAVMPS 271
Query: 59 VCGKFTTQ 66
+ TQ
Sbjct: 272 GADQIITQ 279
>pdb|1H79|A Chain A, Structural Basis For Allosteric Substrate Specificity
Regulation In Class Iii Ribonucleotide Reductases: Nrdd
In Complex With Dttp
pdb|1H7A|A Chain A, Structural Basis For Allosteric Substrate Specificity
Regulation In Class Iii Ribonucleotide Reductases: Nrdd
In Complex With Datp
pdb|1H7B|A Chain A, Structural Basis For Allosteric Substrate Specificity
Regulation In Class Iii Ribonucleotide Reductases,
Native Nrdd
pdb|1H78|A Chain A, Structural Basis For Allosteric Substrate Specificity
Regulation In Class Iii Ribonucleotide Reductases: Nrdd
In Complex With Dctp.
pdb|1HK8|A Chain A, Structural Basis For Allosteric Substrate Specificity
Regulation In Class Iii Ribonucleotide Reductases: Nrdd
In Complex With Dgtp
Length = 605
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 23 NPKGLPVAWDYVKKNWDYLLKRFGLNHRV 51
N KGL WDY ++ DY FG+N V
Sbjct: 516 NLKGLEAVWDYAAQHLDY----FGVNMPV 540
>pdb|3IZR|BB Chain b, Localization Of The Large Subunit Ribosomal Proteins
Into A 5.5 A Cryo-Em Map Of Triticum Aestivum
Translating 80s Ribosome
Length = 147
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 28 PVAWDYVKKNWDYLLKRFG 46
P+ W+ VKKN +L+K+FG
Sbjct: 7 PLIWEIVKKNNCFLVKQFG 25
>pdb|1PQ2|A Chain A, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|1PQ2|B Chain B, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|2NNH|A Chain A, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNH|B Chain B, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNI|A Chain A, Cyp2c8dh Complexed With Montelukast
pdb|2NNJ|A Chain A, Cyp2c8dh Complexed With Felodipine
pdb|2VN0|A Chain A, Cyp2c8dh Complexed With Troglitazone
Length = 476
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 31 WDYVKKNWDYLLKRFGLNHRVFGRIIPSVCGKF 63
+DY +N+ L+KRF N R+ VC F
Sbjct: 169 FDYKDQNFLTLMKRFNENFRILNSPWIQVCNNF 201
>pdb|1Y1E|X Chain X, Human Formylglycine Generating Enzyme
pdb|1Y1H|X Chain X, Human Formylglycine Generating Enzyme, Oxidised Cys
Refined As Hydroperoxide
pdb|1Y1I|X Chain X, Hyuman Formylglycine Generating Enzyme, Reduced Form
Length = 311
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 13/58 (22%)
Query: 23 NPKGLPVAWDYVKKNWDYLLKRFGLNHRVFGRIIPSVCGKFTTQERLDEVSEKSLKNL 80
NPKG P D VKK Y+ R S C ++ R + S NL
Sbjct: 245 NPKGPPSGKDRVKKGGSYMCHR-------------SYCYRYRCAARSQNTPDSSASNL 289
>pdb|2AII|X Chain X, Wild-Type Formylglycine Generating Enzyme Reacted With
Iodoacetamide
Length = 286
Score = 25.8 bits (55), Expect = 6.7, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 13/58 (22%)
Query: 23 NPKGLPVAWDYVKKNWDYLLKRFGLNHRVFGRIIPSVCGKFTTQERLDEVSEKSLKNL 80
NPKG P D VKK Y+ R S C ++ R + S NL
Sbjct: 232 NPKGPPSGKDRVKKGGSYMCHR-------------SYCYRYRCAARSQNTPDSSASNL 276
>pdb|2AFT|X Chain X, Formylglycine Generating Enzyme C336s Mutant
pdb|2AIJ|X Chain X, Formylglycine Generating Enzyme C336s Mutant Covalently
Bound To Substrate Peptide Ctpsr
pdb|2AIK|X Chain X, Formylglycine Generating Enzyme C336s Mutant Covalently
Bound To Substrate Peptide Lctpsra
pdb|2HI8|X Chain X, Human Formylglycine Generating Enzyme, C336s Mutant,
Bromide Co- Crystallization
pdb|2HIB|X Chain X, Human Formylglycine Generating Enzyme, C336s Mutant,
Iodide Co- Crystallization
Length = 286
Score = 25.4 bits (54), Expect = 7.3, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 13/58 (22%)
Query: 23 NPKGLPVAWDYVKKNWDYLLKRFGLNHRVFGRIIPSVCGKFTTQERLDEVSEKSLKNL 80
NPKG P D VKK Y ++HR S C ++ R + S NL
Sbjct: 232 NPKGPPSGKDRVKKGGSY------MSHR-------SYCYRYRCAARSQNTPDSSASNL 276
>pdb|1Y1F|X Chain X, Human Formylglycine Generating Enzyme With Cysteine
Sulfenic Acid
pdb|1Y1J|X Chain X, Human Formylglycine Generating Enzyme, Sulfonic
AcidDESULFURATED FORM
Length = 311
Score = 25.4 bits (54), Expect = 7.5, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 13/58 (22%)
Query: 23 NPKGLPVAWDYVKKNWDYLLKRFGLNHRVFGRIIPSVCGKFTTQERLDEVSEKSLKNL 80
NPKG P D VKK Y+ R S C ++ R + S NL
Sbjct: 245 NPKGPPSGKDRVKKGGSYMXHR-------------SYCYRYRCAARSQNTPDSSASNL 289
>pdb|2ODR|D Chain D, Methanococcus Maripaludis Phosphoseryl-Trna Synthetase
Length = 685
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 6 KNIRSQDYFTVIVMVAGNPKGLPVAWDYVKKNWDYLLKRFGLNHRVFG-RIIPSVCGKFT 64
KN+ I + GN G+P ++D VK+ + L++ G R I ++C K T
Sbjct: 436 KNLLGPSILNEIYVYDGNVIGIPESFDGVKEEFKDFLEKGKSEGVATGIRYIDALCFKIT 495
Query: 65 TQ 66
++
Sbjct: 496 SK 497
>pdb|2ODR|B Chain B, Methanococcus Maripaludis Phosphoseryl-Trna Synthetase
Length = 648
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 6 KNIRSQDYFTVIVMVAGNPKGLPVAWDYVKKNWDYLLKRFGLNHRVFG-RIIPSVCGKFT 64
KN+ I + GN G+P ++D VK+ + L++ G R I ++C K T
Sbjct: 436 KNLLGPSILNEIYVYDGNVIGIPESFDGVKEEFKDFLEKGKSEGVATGIRYIDALCFKIT 495
Query: 65 TQ 66
++
Sbjct: 496 SK 497
>pdb|2ODR|A Chain A, Methanococcus Maripaludis Phosphoseryl-Trna Synthetase
Length = 665
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 6 KNIRSQDYFTVIVMVAGNPKGLPVAWDYVKKNWDYLLKRFGLNHRVFG-RIIPSVCGKFT 64
KN+ I + GN G+P ++D VK+ + L++ G R I ++C K T
Sbjct: 436 KNLLGPSILNEIYVYDGNVIGIPESFDGVKEEFKDFLEKGKSEGVATGIRYIDALCFKIT 495
Query: 65 TQ 66
++
Sbjct: 496 SK 497
>pdb|2ODR|C Chain C, Methanococcus Maripaludis Phosphoseryl-Trna Synthetase
Length = 701
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 6 KNIRSQDYFTVIVMVAGNPKGLPVAWDYVKKNWDYLLKRFGLNHRVFG-RIIPSVCGKFT 64
KN+ I + GN G+P ++D VK+ + L++ G R I ++C K T
Sbjct: 436 KNLLGPSILNEIYVYDGNVIGIPESFDGVKEEFKDFLEKGKSEGVATGIRYIDALCFKIT 495
Query: 65 TQ 66
++
Sbjct: 496 SK 497
>pdb|4AG6|A Chain A, Structure Of Virb4 Of Thermoanaerobacter Pseudethanolicus
pdb|4AG6|B Chain B, Structure Of Virb4 Of Thermoanaerobacter Pseudethanolicus
pdb|4AG6|C Chain C, Structure Of Virb4 Of Thermoanaerobacter Pseudethanolicus
pdb|4AG6|D Chain D, Structure Of Virb4 Of Thermoanaerobacter Pseudethanolicus
Length = 392
Score = 25.4 bits (54), Expect = 8.2, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 23 NPKGLPV-AWDYVKKNWDYLLKRFGLNHRVFGRI 55
+P+G+P W VK+ ++Y +K+ N +GR+
Sbjct: 164 DPRGVPNDKWPTVKELYEYCVKKAEENPETYGRL 197
>pdb|4AG5|A Chain A, Structure Of Virb4 Of Thermoanaerobacter Pseudethanolicus
pdb|4AG5|B Chain B, Structure Of Virb4 Of Thermoanaerobacter Pseudethanolicus
pdb|4AG5|C Chain C, Structure Of Virb4 Of Thermoanaerobacter Pseudethanolicus
pdb|4AG5|D Chain D, Structure Of Virb4 Of Thermoanaerobacter Pseudethanolicus
Length = 392
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 23 NPKGLPV-AWDYVKKNWDYLLKRFGLNHRVFGRI 55
+P+G+P W VK+ ++Y +K+ N +GR+
Sbjct: 164 DPRGVPNDKWPTVKELYEYCVKKAEENPETYGRL 197
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,507,783
Number of Sequences: 62578
Number of extensions: 92087
Number of successful extensions: 208
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 192
Number of HSP's gapped (non-prelim): 28
length of query: 81
length of database: 14,973,337
effective HSP length: 50
effective length of query: 31
effective length of database: 11,844,437
effective search space: 367177547
effective search space used: 367177547
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)