Query psy13041
Match_columns 81
No_of_seqs 105 out of 1022
Neff 9.8
Searched_HMMs 29240
Date Fri Aug 16 17:58:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13041.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13041hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rjo_A Endoplasmic reticulum a 99.8 1.3E-19 4.3E-24 115.6 7.2 78 3-80 294-371 (419)
2 3se6_A Endoplasmic reticulum a 99.7 2.6E-17 8.7E-22 113.4 6.6 78 3-80 845-922 (967)
3 4fke_A Aminopeptidase N; zinc 99.7 3.8E-17 1.3E-21 112.0 5.1 79 2-80 784-862 (909)
4 2xdt_A Endoplasmic reticulum a 99.6 3.1E-16 1.1E-20 107.4 7.0 77 3-79 777-853 (897)
5 1z5h_A Tricorn protease intera 99.3 4.2E-13 1.4E-17 91.1 2.1 71 7-80 679-749 (780)
6 3kat_A Nacht, LRR and PYD doma 87.5 0.99 3.4E-05 23.7 3.7 49 22-74 10-58 (107)
7 1g1e_B SIN3A; four-helix bundl 70.2 6.7 0.00023 19.7 3.3 17 64-80 60-76 (89)
8 2czy_A Paired amphipathic heli 66.1 10 0.00034 18.5 4.7 19 62-80 39-57 (77)
9 2f05_A Paired amphipathic heli 65.2 9.1 0.00031 19.9 3.2 13 67-79 57-69 (105)
10 1e91_A Paired amphipathic heli 65.2 4.5 0.00016 20.2 2.0 14 66-79 56-69 (85)
11 3oao_A Uncharacterized protein 53.0 27 0.00093 19.3 5.0 54 24-78 41-94 (147)
12 1ioj_A APOC-I; apolipoprotein, 51.8 18 0.00061 16.8 2.7 25 23-47 31-55 (57)
13 2khr_A Protein MBTH; sideropho 50.8 6.5 0.00022 19.3 1.1 22 22-43 43-64 (74)
14 2cr7_A Paired amphipathic heli 47.7 24 0.00084 17.2 3.6 17 63-79 46-62 (80)
15 2ecc_A Homeobox and leucine zi 47.2 17 0.00057 17.8 2.3 19 62-80 8-26 (76)
16 3fzg_A 16S rRNA methylase; met 46.1 3.3 0.00011 24.2 -0.4 40 36-78 3-42 (200)
17 3a03_A T-cell leukemia homeobo 45.7 19 0.00065 15.9 2.3 17 64-80 4-20 (56)
18 1bw5_A ISL-1HD, insulin gene e 45.4 19 0.00064 16.5 2.3 18 63-80 9-26 (66)
19 3a02_A Homeobox protein arista 44.8 20 0.00067 16.1 2.3 18 63-80 5-22 (60)
20 1ig7_A Homeotic protein MSX-1; 44.8 20 0.00068 15.9 2.3 18 63-80 6-23 (58)
21 1jgg_A Segmentation protein EV 43.3 21 0.00073 15.9 2.3 18 63-80 7-24 (60)
22 2hdd_A Protein (engrailed home 42.5 22 0.00076 15.9 2.3 18 63-80 9-26 (61)
23 2dmu_A Homeobox protein goosec 42.2 22 0.00075 16.5 2.3 18 63-80 13-30 (70)
24 1akh_A Protein (mating-type pr 41.3 24 0.00082 15.8 2.3 18 63-80 11-28 (61)
25 2p1h_A APAF-1, apoptotic prote 41.3 33 0.0011 16.8 3.3 39 32-74 9-47 (94)
26 2dn0_A Zinc fingers and homeob 40.8 23 0.0008 16.7 2.3 19 62-80 13-31 (76)
27 2vi6_A Homeobox protein nanog; 40.7 25 0.00084 15.8 2.3 18 63-80 9-26 (62)
28 2e1o_A Homeobox protein PRH; D 40.7 24 0.00082 16.4 2.3 18 63-80 13-30 (70)
29 2cra_A Homeobox protein HOX-B1 40.6 24 0.00082 16.4 2.3 18 63-80 13-30 (70)
30 2da5_A Zinc fingers and homeob 40.6 24 0.00081 16.7 2.3 17 64-80 14-30 (75)
31 2da2_A Alpha-fetoprotein enhan 40.0 25 0.00085 16.2 2.3 18 63-80 13-30 (70)
32 2dmq_A LIM/homeobox protein LH 39.5 25 0.00085 16.7 2.3 18 63-80 13-30 (80)
33 1wh5_A ZF-HD homeobox family p 39.5 25 0.00085 17.0 2.2 16 63-78 23-38 (80)
34 2djn_A Homeobox protein DLX-5; 39.2 26 0.00088 16.2 2.2 18 63-80 13-30 (70)
35 1ahd_P Antennapedia protein mu 38.7 27 0.00093 16.1 2.3 18 63-80 8-25 (68)
36 2h1k_A IPF-1, pancreatic and d 38.7 28 0.00095 15.7 2.3 18 63-80 9-26 (63)
37 2da1_A Alpha-fetoprotein enhan 38.4 27 0.00094 16.1 2.3 18 63-80 13-30 (70)
38 1yz8_P Pituitary homeobox 2; D 37.2 29 0.001 15.9 2.2 18 63-80 9-26 (68)
39 2l7z_A Homeobox protein HOX-A1 36.3 30 0.001 16.2 2.3 18 63-80 13-30 (73)
40 2k40_A Homeobox expressed in E 35.3 33 0.0011 15.7 2.2 18 63-80 7-24 (67)
41 2dmt_A Homeobox protein BARH-l 35.3 32 0.0011 16.4 2.3 18 63-80 23-40 (80)
42 2dmp_A Zinc fingers and homeob 34.8 32 0.0011 16.9 2.3 17 64-80 20-36 (89)
43 3rkq_A Homeobox protein NKX-2. 34.4 33 0.0011 14.9 2.2 16 64-79 9-24 (58)
44 1ftt_A TTF-1 HD, thyroid trans 34.2 36 0.0012 15.7 2.3 18 63-80 8-25 (68)
45 1k61_A Mating-type protein alp 33.8 36 0.0012 15.1 2.2 15 64-78 5-19 (60)
46 2da4_A Hypothetical protein DK 33.0 36 0.0012 16.2 2.2 17 63-79 14-30 (80)
47 2dms_A Homeobox protein OTX2; 32.6 38 0.0013 16.1 2.3 18 63-80 13-30 (80)
48 2pst_X Hypothetical protein PA 32.4 3.2 0.00011 20.4 -1.7 21 22-42 41-61 (74)
49 3ewt_E Tumor necrosis factor r 32.3 27 0.00093 13.3 1.6 13 68-80 12-24 (25)
50 3thf_A Protein shroom; coiled- 32.3 64 0.0022 18.7 3.4 27 52-78 130-156 (190)
51 2cue_A Paired box protein PAX6 31.9 39 0.0013 16.1 2.2 18 63-80 13-30 (80)
52 1zq3_P PRD-4, homeotic bicoid 31.5 41 0.0014 15.4 2.2 18 63-80 8-25 (68)
53 1n0w_B Breast cancer type 2 su 31.4 14 0.00048 15.2 0.4 16 65-80 19-34 (35)
54 1nk2_P Homeobox protein VND; h 31.4 41 0.0014 15.9 2.3 18 63-80 15-32 (77)
55 1q87_A 39 kDa initiator bindin 31.4 16 0.00056 21.5 0.9 44 23-67 28-71 (221)
56 2ly9_A Zinc fingers and homeob 30.8 43 0.0015 15.6 2.3 18 62-79 11-28 (74)
57 2l9r_A Homeobox protein NKX-3. 30.7 48 0.0016 15.6 2.5 17 63-79 10-26 (69)
58 2cuf_A FLJ21616 protein; homeo 29.9 43 0.0015 16.6 2.3 18 63-80 13-30 (95)
59 2jpn_A DAR protein, ATP-depend 29.3 56 0.0019 15.9 2.8 26 53-79 18-43 (79)
60 1b8i_A Ultrabithorax, protein 29.1 47 0.0016 15.9 2.3 19 62-80 25-43 (81)
61 3nau_A Zinc fingers and homeob 29.1 48 0.0017 15.7 2.2 17 63-79 10-26 (66)
62 1puf_A HOX-1.7, homeobox prote 28.9 48 0.0016 15.6 2.3 18 63-80 19-36 (77)
63 1m45_B IQ2, IQ2 motif from MYO 28.5 32 0.0011 12.8 2.4 13 29-41 4-16 (26)
64 3vej_A Ubiquitin-like protein 28.3 44 0.0015 14.4 4.0 33 8-40 6-39 (41)
65 2ecb_A Zinc fingers and homeob 28.2 53 0.0018 16.4 2.4 18 63-80 17-34 (89)
66 2lpd_A Uncharacterized protein 28.0 4.9 0.00017 20.7 -1.5 21 22-42 54-74 (95)
67 3e8t_A Takeout 1, takeout-like 27.8 90 0.0031 17.8 4.0 26 22-47 166-191 (220)
68 1kn1_B Allophycocyanin; helix- 27.4 73 0.0025 17.7 3.1 27 52-78 5-33 (161)
69 2e19_A Transcription factor 8; 27.3 53 0.0018 15.0 2.2 15 65-79 11-25 (64)
70 1fjl_A Paired protein; DNA-bin 27.0 54 0.0018 15.6 2.3 18 63-80 24-41 (81)
71 3cu4_A Cytochrome C family pro 26.9 45 0.0016 15.5 2.0 18 63-80 67-84 (85)
72 2m0c_A Homeobox protein arista 26.6 56 0.0019 15.1 2.3 18 63-80 15-32 (75)
73 1ayg_A Cytochrome C-552; elect 26.4 55 0.0019 15.0 2.2 17 63-79 63-79 (80)
74 2kt0_A Nanog, homeobox protein 26.2 56 0.0019 15.6 2.3 17 63-79 28-44 (84)
75 2r5y_A Homeotic protein sex co 26.1 55 0.0019 15.9 2.2 18 62-79 33-50 (88)
76 2c7l_B Phycoerythrocyanin beta 25.9 78 0.0027 17.8 3.1 27 52-78 5-33 (172)
77 3crd_A Raidd; caspase recruitm 25.7 71 0.0024 15.9 3.6 40 32-74 7-46 (100)
78 2vml_B Phycocyanin beta chain; 25.3 88 0.003 17.6 3.2 27 52-78 5-33 (172)
79 1uhs_A HOP, homeodomain only p 24.9 62 0.0021 15.0 2.2 16 63-78 7-22 (72)
80 2d0s_A Cytochrome C, cytochrom 24.9 60 0.002 14.8 2.2 16 64-79 63-78 (79)
81 1v31_A Hypothetical protein RA 24.8 32 0.0011 17.3 1.2 15 24-38 30-44 (93)
82 2kvc_A Putative uncharacterize 24.3 84 0.0029 16.3 7.1 66 5-78 20-88 (103)
83 2xqo_A Cellulosome enzyme, doc 24.3 95 0.0033 18.1 3.2 39 9-48 42-80 (243)
84 3a01_A Homeodomain-containing 24.2 63 0.0021 15.9 2.3 18 63-80 23-40 (93)
85 3l6g_A Betaine ABC transporter 24.1 1.2E+02 0.004 17.8 4.2 36 8-43 216-251 (256)
86 1v32_A AT5G08430, hypothetical 23.9 35 0.0012 17.6 1.2 14 25-38 39-52 (101)
87 3mab_A Uncharacterized protein 23.8 80 0.0027 15.9 2.6 24 56-79 62-85 (93)
88 1b72_A Protein (homeobox prote 23.7 64 0.0022 16.0 2.2 19 62-80 39-57 (97)
89 2dt7_A Splicing factor 3A subu 23.5 53 0.0018 13.7 1.9 11 68-78 18-28 (38)
90 2exv_A Cytochrome C-551; alpha 23.4 65 0.0022 14.7 2.3 16 64-79 66-81 (82)
91 1uhr_A SWI/SNF related, matrix 23.4 35 0.0012 17.1 1.2 14 25-38 31-44 (93)
92 3o18_A C-phycocyanin alpha sub 22.9 1E+02 0.0035 17.1 3.2 27 52-78 5-33 (162)
93 2oj4_A RGS3, regulator of G-pr 22.8 50 0.0017 16.9 1.8 21 17-37 11-31 (127)
94 2w7n_A TRFB transcriptional re 22.6 58 0.002 16.7 1.9 51 8-58 5-57 (101)
95 2aze_C Retinoblastoma-associat 22.6 20 0.00069 15.6 0.1 23 55-77 3-25 (46)
96 2da3_A Alpha-fetoprotein enhan 22.5 28 0.00097 16.5 0.7 16 64-79 24-39 (80)
97 2hi3_A Homeodomain-only protei 22.3 72 0.0025 14.8 2.3 16 63-78 8-23 (73)
98 3r2v_A PB2 C-terminal subunit; 22.3 42 0.0014 19.1 1.5 18 30-47 12-29 (216)
99 1c75_A Cytochrome C-553; heme, 22.1 66 0.0023 14.3 2.3 17 63-79 54-70 (71)
100 1gks_A Cytochrome C551; haloph 21.7 73 0.0025 14.6 2.3 16 64-79 62-77 (78)
101 1lfb_A Liver transcription fac 21.6 75 0.0026 16.1 2.2 18 63-80 15-32 (99)
102 2dkl_A Trinucleotide repeat co 21.2 89 0.003 15.4 2.7 17 23-39 45-61 (85)
103 2lky_A Uncharacterized protein 21.0 1.1E+02 0.0036 16.2 7.4 67 5-78 22-90 (112)
104 1cch_A Cytochrome C551; electr 20.8 75 0.0026 14.4 2.2 17 63-79 65-81 (82)
105 2dlv_A RGS18, regulator of G-p 20.8 45 0.0015 17.5 1.4 21 17-37 19-39 (140)
106 2zxy_A Cytochrome C552, cytoch 20.7 76 0.0026 14.5 2.2 16 64-79 71-86 (87)
107 2crn_A Ubash3A protein; compac 20.7 79 0.0027 14.6 2.3 15 25-39 36-50 (64)
108 3dwl_G Actin-related protein 2 20.0 1.1E+02 0.0038 17.0 2.8 30 8-39 87-116 (152)
No 1
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=99.80 E-value=1.3e-19 Score=115.62 Aligned_cols=78 Identities=26% Similarity=0.604 Sum_probs=72.0
Q ss_pred CCCCccccchHHHHHHHhhcCCchHHHHHHHHHHhHHHHHHHhCCCchhhhchHHHhhcccCCHHHHHHHHHHHhhcC
Q psy13041 3 KDEKNIRSQDYFTVIVMVAGNPKGLPVAWDYVKKNWDYLLKRFGLNHRVFGRIIPSVCGKFTTQERLDEVSEKSLKNL 80 (81)
Q Consensus 3 l~~~~v~~qd~~~~~~~~~~n~~~~~~~~~f~~~n~~~i~~~~~~~~~~l~~~i~~~~~~~~t~~~~~~~~~f~~~~~ 80 (81)
++++.||+||+..++.++++||.|++++|+|+++||+.|.++++++.+.+.++|..+++.++|+++++++++||+.++
T Consensus 294 l~~~~ir~qD~~~~~~~v~~n~~g~~~aw~fl~~nw~~l~~~~~~~~~~~~~~i~~~~~~~~t~~~l~e~~~Ff~~~~ 371 (419)
T 3rjo_A 294 FKGDKIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRTRLEEVKGFFSSLK 371 (419)
T ss_dssp HHTSSSCGGGHHHHHHHHHTSTTTHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHTTTTCCSHHHHHHHHHHHHTTT
T ss_pred hCCCCCchhHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHhCcCchhHHHHHHHHhhcCCCHHHHHHHHHHHHhCc
Confidence 455657999999999999999999999999999999999999997667899999999999999999999999999765
No 2
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A*
Probab=99.70 E-value=2.6e-17 Score=113.42 Aligned_cols=78 Identities=31% Similarity=0.540 Sum_probs=71.7
Q ss_pred CCCCccccchHHHHHHHhhcCCchHHHHHHHHHHhHHHHHHHhCCCchhhhchHHHhhcccCCHHHHHHHHHHHhhcC
Q psy13041 3 KDEKNIRSQDYFTVIVMVAGNPKGLPVAWDYVKKNWDYLLKRFGLNHRVFGRIIPSVCGKFTTQERLDEVSEKSLKNL 80 (81)
Q Consensus 3 l~~~~v~~qd~~~~~~~~~~n~~~~~~~~~f~~~n~~~i~~~~~~~~~~l~~~i~~~~~~~~t~~~~~~~~~f~~~~~ 80 (81)
++++.||.||+..++.++++||.|++++|+|+++||+.|.++++.+...+.++|..+++.++|+++++++++||+.++
T Consensus 845 l~~~~i~~qd~~~~~~~v~~n~~g~~~~w~f~~~nw~~i~~~~~~~~~~~~~~i~~~~~~~~t~~~l~~~~~f~~~~~ 922 (967)
T 3se6_A 845 MEGKVIKTQNLAALLHAIARRPKGQQLAWDFVRENWTHLLKKFDLGSYDIRMIISGTTAHFSSKDKLQEVKLFFESLE 922 (967)
T ss_dssp HHCSSSCGGGHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHTTTTTCCSHHHHHHHHHHHHHSC
T ss_pred hCcCcCcHhHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Confidence 445558999999999999999999999999999999999999987667899999999999999999999999998764
No 3
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=99.67 E-value=3.8e-17 Score=111.97 Aligned_cols=79 Identities=29% Similarity=0.548 Sum_probs=73.4
Q ss_pred CCCCCccccchHHHHHHHhhcCCchHHHHHHHHHHhHHHHHHHhCCCchhhhchHHHhhcccCCHHHHHHHHHHHhhcC
Q psy13041 2 AKDEKNIRSQDYFTVIVMVAGNPKGLPVAWDYVKKNWDYLLKRFGLNHRVFGRIIPSVCGKFTTQERLDEVSEKSLKNL 80 (81)
Q Consensus 2 ~l~~~~v~~qd~~~~~~~~~~n~~~~~~~~~f~~~n~~~i~~~~~~~~~~l~~~i~~~~~~~~t~~~~~~~~~f~~~~~ 80 (81)
+++++.||+||+..++.++++||.|+..+|+|+++||+.|.++++++...+.++|..+++.++|+++++++++||+.++
T Consensus 784 ~l~~~~ir~qd~~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~~~~t~~~~~~~~~f~~~~~ 862 (909)
T 4fke_A 784 TLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFSSEFELQQLEQFKKNNM 862 (909)
T ss_dssp TTCTTTSCGGGHHHHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHTTCCSHHHHHHHHHHHTTCS
T ss_pred HhCCCCCchhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Confidence 5677669999999999999999999999999999999999999998767799999999999999999999999998764
No 4
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=99.64 E-value=3.1e-16 Score=107.42 Aligned_cols=77 Identities=26% Similarity=0.621 Sum_probs=70.6
Q ss_pred CCCCccccchHHHHHHHhhcCCchHHHHHHHHHHhHHHHHHHhCCCchhhhchHHHhhcccCCHHHHHHHHHHHhhc
Q psy13041 3 KDEKNIRSQDYFTVIVMVAGNPKGLPVAWDYVKKNWDYLLKRFGLNHRVFGRIIPSVCGKFTTQERLDEVSEKSLKN 79 (81)
Q Consensus 3 l~~~~v~~qd~~~~~~~~~~n~~~~~~~~~f~~~n~~~i~~~~~~~~~~l~~~i~~~~~~~~t~~~~~~~~~f~~~~ 79 (81)
++++.|+.||+..++.++++||.|+.++|+|+++||+.|.++++++...+.+++..+++.++|+++++++++||+.+
T Consensus 777 ~~~~~i~~qd~~~~~~~v~~n~~g~~~~~~~~~~n~~~i~~~~~~~~~~~~~~i~~~~~~~~t~~~~~~~~~f~~~~ 853 (897)
T 2xdt_A 777 FKGDKIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRTRLEEVKGFFSSL 853 (897)
T ss_dssp HHCSSSCGGGHHHHHHHHHTSTTTHHHHHHHHHHTHHHHHHHHCTTCHHHHHHHHHTTTTCCSHHHHHHHHHHHHHT
T ss_pred hCCCCCcHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Confidence 44445999999999999999999999999999999999999998765678999999999999999999999999874
No 5
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A*
Probab=99.31 E-value=4.2e-13 Score=91.10 Aligned_cols=71 Identities=10% Similarity=0.099 Sum_probs=65.1
Q ss_pred ccccchHHHHHHHhhcCCchHHHHHHHHHHhHHHHHHHhCCCchhhhchHHHhhcccCCHHHHHHHHHHHhhcC
Q psy13041 7 NIRSQDYFTVIVMVAGNPKGLPVAWDYVKKNWDYLLKRFGLNHRVFGRIIPSVCGKFTTQERLDEVSEKSLKNL 80 (81)
Q Consensus 7 ~v~~qd~~~~~~~~~~n~~~~~~~~~f~~~n~~~i~~~~~~~~~~l~~~i~~~~~~~~t~~~~~~~~~f~~~~~ 80 (81)
.++.||...++.++++||.|++.+|+|+++||+.|.+++++ ...+.+++..+ +.++|++ ++++++||+.++
T Consensus 679 ~i~~qd~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~-~~~~~~~i~~~-~~~~t~~-~~~~~~f~~~~~ 749 (780)
T 1z5h_A 679 EIKKQDMISFFSSALETLPGREFIFANLDRIIRLVIRYFTG-NRTASRTVEMM-IPVIGLD-HPDAEDIVRNIG 749 (780)
T ss_dssp SSCHHHHHHHHHHHTTSHHHHHHHHHTHHHHHHHHHHHHCS-SSHHHHHHHHH-HHHHHHH-CTTHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHhCC-chhHHHHHHhh-hccCCHH-HHHHHHHHccCC
Confidence 49999999999999999999999999999999999999975 35789999998 8999999 999999998754
No 6
>3kat_A Nacht, LRR and PYD domains-containing protein 1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 3.10A {Homo sapiens}
Probab=87.46 E-value=0.99 Score=23.75 Aligned_cols=49 Identities=18% Similarity=0.333 Sum_probs=29.3
Q ss_pred cCCchHHHHHHHHHHhHHHHHHHhCCCchhhhchHHHhhcccCCHHHHHHHHH
Q psy13041 22 GNPKGLPVAWDYVKKNWDYLLKRFGLNHRVFGRIIPSVCGKFTTQERLDEVSE 74 (81)
Q Consensus 22 ~n~~~~~~~~~f~~~n~~~i~~~~~~~~~~l~~~i~~~~~~~~t~~~~~~~~~ 74 (81)
..|.....-..|+++|...+.++... ..-++..+.+.+-|+++.+.+++
T Consensus 10 ~~~~~~~~~~~fv~~hR~~Li~rv~~----V~~ILD~Ll~~VLteee~e~I~a 58 (107)
T 3kat_A 10 HSPLDAPQLLHFVDQYREQLIARVTS----VEVVLDKLHGQVLSQEQYERVLA 58 (107)
T ss_dssp ---------CHHHHHTHHHHHTTCCC----HHHHHHHHTTTTSCHHHHHHHHH
T ss_pred CCCCCCcccchHHHHHHHHHHHHHhh----HHHHHHHHHHhhCCHHHHHHHHh
Confidence 34444455568999999999998873 33344444445778888888875
No 7
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=70.24 E-value=6.7 Score=19.75 Aligned_cols=17 Identities=24% Similarity=0.094 Sum_probs=11.3
Q ss_pred CCHHHHHHHHHHHhhcC
Q psy13041 64 TTQERLDEVSEKSLKNL 80 (81)
Q Consensus 64 ~t~~~~~~~~~f~~~~~ 80 (81)
.+.+-++++..+|+++|
T Consensus 60 ~~~~V~~~V~~LF~~h~ 76 (89)
T 1g1e_B 60 TEQEVYAQVARLFKNQE 76 (89)
T ss_dssp CHHHHHHHHHHHTTTCH
T ss_pred cHHHHHHHHHHHHccCH
Confidence 34577777777777654
No 8
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=66.12 E-value=10 Score=18.49 Aligned_cols=19 Identities=16% Similarity=0.074 Sum_probs=11.8
Q ss_pred ccCCHHHHHHHHHHHhhcC
Q psy13041 62 KFTTQERLDEVSEKSLKNL 80 (81)
Q Consensus 62 ~~~t~~~~~~~~~f~~~~~ 80 (81)
...+.+-++++...|+++|
T Consensus 39 ~~~~~~v~~rv~~Lf~~hp 57 (77)
T 2czy_A 39 SIDTPGVIRRVSQLFHEHP 57 (77)
T ss_dssp CSCHHHHHHHHHHHTTTCH
T ss_pred CCCHHHHHHHHHHHHcCCH
Confidence 4555666667777666653
No 9
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=65.17 E-value=9.1 Score=19.94 Aligned_cols=13 Identities=23% Similarity=0.133 Sum_probs=6.8
Q ss_pred HHHHHHHHHHhhc
Q psy13041 67 ERLDEVSEKSLKN 79 (81)
Q Consensus 67 ~~~~~~~~f~~~~ 79 (81)
+-++++..+|+++
T Consensus 57 eV~~~V~~LF~~h 69 (105)
T 2f05_A 57 EVFTEVANLFRGQ 69 (105)
T ss_dssp HHHHHHHHHTTTC
T ss_pred HHHHHHHHHHccC
Confidence 4455555555544
No 10
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=65.17 E-value=4.5 Score=20.18 Aligned_cols=14 Identities=21% Similarity=0.164 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHhhc
Q psy13041 66 QERLDEVSEKSLKN 79 (81)
Q Consensus 66 ~~~~~~~~~f~~~~ 79 (81)
.+-++++..+|+++
T Consensus 56 ~eV~~~V~~Lf~~h 69 (85)
T 1e91_A 56 EEVFTEVANLFRGQ 69 (85)
T ss_dssp HHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHccC
Confidence 44556666666654
No 11
>3oao_A Uncharacterized protein from DUF2059 family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.72A {Pseudomonas aeruginosa} PDB: 2x3o_A
Probab=53.01 E-value=27 Score=19.25 Aligned_cols=54 Identities=9% Similarity=-0.039 Sum_probs=29.7
Q ss_pred CchHHHHHHHHHHhHHHHHHHhCCCchhhhchHHHhhcccCCHHHHHHHHHHHhh
Q psy13041 24 PKGLPVAWDYVKKNWDYLLKRFGLNHRVFGRIIPSVCGKFTTQERLDEVSEKSLK 78 (81)
Q Consensus 24 ~~~~~~~~~f~~~n~~~i~~~~~~~~~~l~~~i~~~~~~~~t~~~~~~~~~f~~~ 78 (81)
|......|+=+.+.+..+..+.-+. ..+...+..+-...-|+++++++-+|+++
T Consensus 41 p~~~~~~~~~~~~k~~~~~~k~~s~-~~l~~~~~~iY~~~fT~~El~~l~~FY~s 94 (147)
T 3oao_A 41 PESKKAVLERYQAKANAELDRAIGW-DKIKPELIKLYTTNFTESELKDLNAFYQS 94 (147)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHSCHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHCCHHHHHHHHHHHCC
Confidence 5544455555566665554432211 12222232333456668999999999874
No 12
>1ioj_A APOC-I; apolipoprotein, amphipathic helix, lipid association, LCAT activation; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=51.80 E-value=18 Score=16.79 Aligned_cols=25 Identities=0% Similarity=0.142 Sum_probs=19.5
Q ss_pred CCchHHHHHHHHHHhHHHHHHHhCC
Q psy13041 23 NPKGLPVAWDYVKKNWDYLLKRFGL 47 (81)
Q Consensus 23 n~~~~~~~~~f~~~n~~~i~~~~~~ 47 (81)
+..-..-.++||.+.++.+.++++.
T Consensus 31 ~Se~~tKtrnWfsEtfekvK~K~~~ 55 (57)
T 1ioj_A 31 QSELSAKMREWFSETFQKVKEKLKI 55 (57)
T ss_dssp SSSSSSHHHHHHHHHHHHHHHHSSS
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhcc
Confidence 3344456789999999999999875
No 13
>2khr_A Protein MBTH; siderophores, mycobactin, MTBH-like, 2-hydroxyphenyloxazolin tuberculosis, biosynthetic protein, structural genomics; NMR {Mycobacterium tuberculosis}
Probab=50.81 E-value=6.5 Score=19.28 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=18.5
Q ss_pred cCCchHHHHHHHHHHhHHHHHH
Q psy13041 22 GNPKGLPVAWDYVKKNWDYLLK 43 (81)
Q Consensus 22 ~n~~~~~~~~~f~~~n~~~i~~ 43 (81)
..+..+..-++|+.+||..+..
T Consensus 43 ~~~~sr~~CL~yIe~~WtDmRP 64 (74)
T 2khr_A 43 HGEASRAACLDYVEKNWTDLRP 64 (74)
T ss_dssp ECSCCHHHHHHHHHHHHHSCCC
T ss_pred CCCCCHHHHHHHHHhhhcCCCc
Confidence 4678899999999999988643
No 14
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=47.73 E-value=24 Score=17.22 Aligned_cols=17 Identities=18% Similarity=0.126 Sum_probs=8.7
Q ss_pred cCCHHHHHHHHHHHhhc
Q psy13041 63 FTTQERLDEVSEKSLKN 79 (81)
Q Consensus 63 ~~t~~~~~~~~~f~~~~ 79 (81)
..+.+-++++...|+++
T Consensus 46 ~~~~~v~~rV~~Lf~~h 62 (80)
T 2cr7_A 46 IDTPGVIRRVSQLFHEH 62 (80)
T ss_dssp SCHHHHHHHHHHHGGGC
T ss_pred CCHHHHHHHHHHHHcCC
Confidence 34445555555555544
No 15
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=47.23 E-value=17 Score=17.77 Aligned_cols=19 Identities=26% Similarity=0.148 Sum_probs=14.7
Q ss_pred ccCCHHHHHHHHHHHhhcC
Q psy13041 62 KFTTQERLDEVSEKSLKNL 80 (81)
Q Consensus 62 ~~~t~~~~~~~~~f~~~~~ 80 (81)
.--|.+++..|++.|..++
T Consensus 8 ~kfT~~Ql~~Le~~F~~~~ 26 (76)
T 2ecc_A 8 KRKTKEQLAILKSFFLQCQ 26 (76)
T ss_dssp CCCCHHHHHHHHHHHHHCS
T ss_pred CCCCHHHHHHHHHHHHHCC
Confidence 3456899999999987654
No 16
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=46.11 E-value=3.3 Score=24.18 Aligned_cols=40 Identities=23% Similarity=0.355 Sum_probs=27.4
Q ss_pred HhHHHHHHHhCCCchhhhchHHHhhcccCCHHHHHHHHHHHhh
Q psy13041 36 KNWDYLLKRFGLNHRVFGRIIPSVCGKFTTQERLDEVSEKSLK 78 (81)
Q Consensus 36 ~n~~~i~~~~~~~~~~l~~~i~~~~~~~~t~~~~~~~~~f~~~ 78 (81)
-||+.+.+++....-.+..+ +....+|.+.+..++.|...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~---l~~H~STReRLp~ld~fY~~ 42 (200)
T 3fzg_A 3 PNWDKLLKKYNQGQLSIEDL---LKIHSSTNERVATLNDFYTY 42 (200)
T ss_dssp CCHHHHHHHHHTTSCCHHHH---HHHSHHHHTTGGGHHHHHHH
T ss_pred CcHHHHHHHHHHhhhhHHHH---HhhCCCHHHHhHhHHHHHHH
Confidence 48999888887543334443 34578888888888888653
No 17
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=45.67 E-value=19 Score=15.91 Aligned_cols=17 Identities=12% Similarity=0.227 Sum_probs=12.6
Q ss_pred CCHHHHHHHHHHHhhcC
Q psy13041 64 TTQERLDEVSEKSLKNL 80 (81)
Q Consensus 64 ~t~~~~~~~~~f~~~~~ 80 (81)
.|.+++..++..|..++
T Consensus 4 ft~~Ql~~Le~~F~~~~ 20 (56)
T 3a03_A 4 FSRSQVLELERRFLRQK 20 (56)
T ss_dssp CCHHHHHHHHHHHHHCS
T ss_pred cCHHHHHHHHHHHHhcC
Confidence 46788888988887543
No 18
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=45.43 E-value=19 Score=16.50 Aligned_cols=18 Identities=11% Similarity=0.089 Sum_probs=13.7
Q ss_pred cCCHHHHHHHHHHHhhcC
Q psy13041 63 FTTQERLDEVSEKSLKNL 80 (81)
Q Consensus 63 ~~t~~~~~~~~~f~~~~~ 80 (81)
..|.++++.++..|..++
T Consensus 9 ~ft~~q~~~Le~~F~~~~ 26 (66)
T 1bw5_A 9 VLNEKQLHTLRTCYAANP 26 (66)
T ss_dssp CCSHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHhcCC
Confidence 456788899998887654
No 19
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=44.81 E-value=20 Score=16.07 Aligned_cols=18 Identities=17% Similarity=0.102 Sum_probs=13.4
Q ss_pred cCCHHHHHHHHHHHhhcC
Q psy13041 63 FTTQERLDEVSEKSLKNL 80 (81)
Q Consensus 63 ~~t~~~~~~~~~f~~~~~ 80 (81)
..|.++++.++..|..++
T Consensus 5 ~ft~~Q~~~Le~~F~~~~ 22 (60)
T 3a02_A 5 TFTSFQLEELEKAFSRTH 22 (60)
T ss_dssp CCCHHHHHHHHHHHHHCS
T ss_pred ccCHHHHHHHHHHHHcCC
Confidence 456788899998887653
No 20
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=44.76 E-value=20 Score=15.86 Aligned_cols=18 Identities=17% Similarity=-0.010 Sum_probs=13.4
Q ss_pred cCCHHHHHHHHHHHhhcC
Q psy13041 63 FTTQERLDEVSEKSLKNL 80 (81)
Q Consensus 63 ~~t~~~~~~~~~f~~~~~ 80 (81)
..|.+++..++..|..++
T Consensus 6 ~ft~~Q~~~Le~~F~~~~ 23 (58)
T 1ig7_A 6 PFTTAQLLALERKFRQKQ 23 (58)
T ss_dssp CCCHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHhcCC
Confidence 356788889988887653
No 21
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=43.32 E-value=21 Score=15.94 Aligned_cols=18 Identities=17% Similarity=0.204 Sum_probs=13.4
Q ss_pred cCCHHHHHHHHHHHhhcC
Q psy13041 63 FTTQERLDEVSEKSLKNL 80 (81)
Q Consensus 63 ~~t~~~~~~~~~f~~~~~ 80 (81)
..|.+++..|+..|..++
T Consensus 7 ~ft~~Q~~~Le~~F~~~~ 24 (60)
T 1jgg_A 7 AFTRDQLGRLEKEFYKEN 24 (60)
T ss_dssp CCCHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHHcC
Confidence 356788889998887653
No 22
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=42.51 E-value=22 Score=15.93 Aligned_cols=18 Identities=17% Similarity=0.130 Sum_probs=13.6
Q ss_pred cCCHHHHHHHHHHHhhcC
Q psy13041 63 FTTQERLDEVSEKSLKNL 80 (81)
Q Consensus 63 ~~t~~~~~~~~~f~~~~~ 80 (81)
..|.+++..++..|..++
T Consensus 9 ~ft~~Q~~~Le~~F~~~~ 26 (61)
T 2hdd_A 9 AFSSEQLARLKREFNENR 26 (61)
T ss_dssp CCCHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHccC
Confidence 456788899998887653
No 23
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.19 E-value=22 Score=16.47 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=13.9
Q ss_pred cCCHHHHHHHHHHHhhcC
Q psy13041 63 FTTQERLDEVSEKSLKNL 80 (81)
Q Consensus 63 ~~t~~~~~~~~~f~~~~~ 80 (81)
..|.+++..|+..|..++
T Consensus 13 ~ft~~q~~~Le~~F~~~~ 30 (70)
T 2dmu_A 13 IFTDEQLEALENLFQETK 30 (70)
T ss_dssp CCCHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHccC
Confidence 457889999999887653
No 24
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=41.33 E-value=24 Score=15.77 Aligned_cols=18 Identities=6% Similarity=-0.119 Sum_probs=12.9
Q ss_pred cCCHHHHHHHHHHHhhcC
Q psy13041 63 FTTQERLDEVSEKSLKNL 80 (81)
Q Consensus 63 ~~t~~~~~~~~~f~~~~~ 80 (81)
..|.++++.|+..|..++
T Consensus 11 ~ft~~q~~~Le~~f~~~~ 28 (61)
T 1akh_A 11 SISPQARAFLEEVFRRKQ 28 (61)
T ss_dssp -CCHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHhCC
Confidence 346788888888887653
No 25
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=41.29 E-value=33 Score=16.84 Aligned_cols=39 Identities=15% Similarity=0.240 Sum_probs=22.1
Q ss_pred HHHHHhHHHHHHHhCCCchhhhchHHHhhcccCCHHHHHHHHH
Q psy13041 32 DYVKKNWDYLLKRFGLNHRVFGRIIPSVCGKFTTQERLDEVSE 74 (81)
Q Consensus 32 ~f~~~n~~~i~~~~~~~~~~l~~~i~~~~~~~~t~~~~~~~~~ 74 (81)
+.++.|...+.+.+... ..+..++ ...+-|+++.+++++
T Consensus 9 ~~L~~~r~~Lv~~l~v~-~lld~L~---~~~vlt~~~~e~I~~ 47 (94)
T 2p1h_A 9 NCLLQHREALEKDIKTS-YIMDHMI---SDGFLTISEEEKVRN 47 (94)
T ss_dssp HHHHHTHHHHHHHCCHH-HHHHHHH---HHTSSCHHHHHHHHT
T ss_pred HHHHHhHHHHHHHCCHH-HHHHHHH---HCCCCCHHHHHHHHc
Confidence 56777888777776421 1233333 234666666666654
No 26
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.85 E-value=23 Score=16.73 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=14.8
Q ss_pred ccCCHHHHHHHHHHHhhcC
Q psy13041 62 KFTTQERLDEVSEKSLKNL 80 (81)
Q Consensus 62 ~~~t~~~~~~~~~f~~~~~ 80 (81)
.-.|.++++.|+..|..++
T Consensus 13 ~~ft~~Ql~~Le~~F~~~~ 31 (76)
T 2dn0_A 13 NKKSHEQLSALKGSFCRNQ 31 (76)
T ss_dssp CCCCHHHHHHHHHHHHHSS
T ss_pred ccCCHHHHHHHHHHHhcCC
Confidence 4557899999999987653
No 27
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=40.73 E-value=25 Score=15.84 Aligned_cols=18 Identities=17% Similarity=0.170 Sum_probs=13.5
Q ss_pred cCCHHHHHHHHHHHhhcC
Q psy13041 63 FTTQERLDEVSEKSLKNL 80 (81)
Q Consensus 63 ~~t~~~~~~~~~f~~~~~ 80 (81)
..|.++++.|+..|..++
T Consensus 9 ~ft~~q~~~Le~~F~~~~ 26 (62)
T 2vi6_A 9 VFSQAQLCALKDRFQKQK 26 (62)
T ss_dssp CCCHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHhCC
Confidence 456788899998887643
No 28
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=40.68 E-value=24 Score=16.36 Aligned_cols=18 Identities=11% Similarity=-0.016 Sum_probs=13.8
Q ss_pred cCCHHHHHHHHHHHhhcC
Q psy13041 63 FTTQERLDEVSEKSLKNL 80 (81)
Q Consensus 63 ~~t~~~~~~~~~f~~~~~ 80 (81)
..|.+++..|+..|..++
T Consensus 13 ~ft~~q~~~Le~~F~~~~ 30 (70)
T 2e1o_A 13 RFSNDQTIELEKKFETQK 30 (70)
T ss_dssp CCCHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHcCC
Confidence 456789999999887653
No 29
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=40.63 E-value=24 Score=16.36 Aligned_cols=18 Identities=17% Similarity=0.134 Sum_probs=13.9
Q ss_pred cCCHHHHHHHHHHHhhcC
Q psy13041 63 FTTQERLDEVSEKSLKNL 80 (81)
Q Consensus 63 ~~t~~~~~~~~~f~~~~~ 80 (81)
..|.++++.|+..|..++
T Consensus 13 ~ft~~Q~~~Le~~F~~~~ 30 (70)
T 2cra_A 13 PYSKGQLRELEREYAANK 30 (70)
T ss_dssp CSCHHHHHHHHHHHHHCS
T ss_pred cCCHHHHHHHHHHHHhcC
Confidence 457889999999887653
No 30
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.58 E-value=24 Score=16.72 Aligned_cols=17 Identities=18% Similarity=0.204 Sum_probs=13.5
Q ss_pred CCHHHHHHHHHHHhhcC
Q psy13041 64 TTQERLDEVSEKSLKNL 80 (81)
Q Consensus 64 ~t~~~~~~~~~f~~~~~ 80 (81)
.|.+++..|+..|..++
T Consensus 14 ~t~~Ql~~Le~~F~~~~ 30 (75)
T 2da5_A 14 RAPEQLRALESSFAQNP 30 (75)
T ss_dssp CCHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHhccC
Confidence 47899999999887653
No 31
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=40.05 E-value=25 Score=16.25 Aligned_cols=18 Identities=17% Similarity=-0.082 Sum_probs=13.8
Q ss_pred cCCHHHHHHHHHHHhhcC
Q psy13041 63 FTTQERLDEVSEKSLKNL 80 (81)
Q Consensus 63 ~~t~~~~~~~~~f~~~~~ 80 (81)
..|.+++..|+..|..++
T Consensus 13 ~ft~~q~~~Le~~F~~~~ 30 (70)
T 2da2_A 13 RFTDYQLRVLQDFFDANA 30 (70)
T ss_dssp CCCHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHcCC
Confidence 456788999998887653
No 32
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.51 E-value=25 Score=16.74 Aligned_cols=18 Identities=11% Similarity=-0.045 Sum_probs=13.8
Q ss_pred cCCHHHHHHHHHHHhhcC
Q psy13041 63 FTTQERLDEVSEKSLKNL 80 (81)
Q Consensus 63 ~~t~~~~~~~~~f~~~~~ 80 (81)
..|.++++.|+.+|..++
T Consensus 13 ~ft~~Q~~~Le~~F~~~~ 30 (80)
T 2dmq_A 13 SFKHHQLRTMKSYFAINH 30 (80)
T ss_dssp CCCHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHHcC
Confidence 456888999999887653
No 33
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=39.48 E-value=25 Score=17.02 Aligned_cols=16 Identities=13% Similarity=0.030 Sum_probs=13.4
Q ss_pred cCCHHHHHHHHHHHhh
Q psy13041 63 FTTQERLDEVSEKSLK 78 (81)
Q Consensus 63 ~~t~~~~~~~~~f~~~ 78 (81)
..|.+++++|+.+|+.
T Consensus 23 ~ft~~Ql~~Le~~f~~ 38 (80)
T 1wh5_A 23 KFTAEQKERMLALAER 38 (80)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh
Confidence 4578999999999876
No 34
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.16 E-value=26 Score=16.25 Aligned_cols=18 Identities=11% Similarity=0.093 Sum_probs=13.7
Q ss_pred cCCHHHHHHHHHHHhhcC
Q psy13041 63 FTTQERLDEVSEKSLKNL 80 (81)
Q Consensus 63 ~~t~~~~~~~~~f~~~~~ 80 (81)
..|.++++.|+..|..++
T Consensus 13 ~ft~~Q~~~Le~~F~~~~ 30 (70)
T 2djn_A 13 IYSSFQLAALQRRFQKTQ 30 (70)
T ss_dssp SSCHHHHHHHHHHHTTCS
T ss_pred CCCHHHHHHHHHHHcCCC
Confidence 457788999998887653
No 35
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=38.70 E-value=27 Score=16.12 Aligned_cols=18 Identities=17% Similarity=-0.090 Sum_probs=13.7
Q ss_pred cCCHHHHHHHHHHHhhcC
Q psy13041 63 FTTQERLDEVSEKSLKNL 80 (81)
Q Consensus 63 ~~t~~~~~~~~~f~~~~~ 80 (81)
..|.+++..|+..|..++
T Consensus 8 ~ft~~Q~~~Le~~F~~~~ 25 (68)
T 1ahd_P 8 TYTRYQTLELEKEFHFNR 25 (68)
T ss_dssp CCCHHHHHHHHHHHHHCS
T ss_pred CcCHHHHHHHHHHHccCC
Confidence 457788999998887643
No 36
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=38.66 E-value=28 Score=15.75 Aligned_cols=18 Identities=28% Similarity=0.167 Sum_probs=13.5
Q ss_pred cCCHHHHHHHHHHHhhcC
Q psy13041 63 FTTQERLDEVSEKSLKNL 80 (81)
Q Consensus 63 ~~t~~~~~~~~~f~~~~~ 80 (81)
..|.+++..|+..|..++
T Consensus 9 ~ft~~Q~~~Le~~F~~~~ 26 (63)
T 2h1k_A 9 AYTRAQLLELEKEFLFNK 26 (63)
T ss_dssp CCCHHHHHHHHHHHHHCS
T ss_pred CcCHHHHHHHHHHHhcCC
Confidence 456788999998887653
No 37
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=38.37 E-value=27 Score=16.09 Aligned_cols=18 Identities=17% Similarity=-0.021 Sum_probs=13.7
Q ss_pred cCCHHHHHHHHHHHhhcC
Q psy13041 63 FTTQERLDEVSEKSLKNL 80 (81)
Q Consensus 63 ~~t~~~~~~~~~f~~~~~ 80 (81)
..|.++++.|+..|..++
T Consensus 13 ~ft~~q~~~Le~~F~~~~ 30 (70)
T 2da1_A 13 RITDDQLRVLRQYFDINN 30 (70)
T ss_dssp CCCHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHHCC
Confidence 457788999998887543
No 38
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=37.16 E-value=29 Score=15.95 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=13.8
Q ss_pred cCCHHHHHHHHHHHhhcC
Q psy13041 63 FTTQERLDEVSEKSLKNL 80 (81)
Q Consensus 63 ~~t~~~~~~~~~f~~~~~ 80 (81)
..|.+++..|+..|..++
T Consensus 9 ~ft~~Q~~~Le~~F~~~~ 26 (68)
T 1yz8_P 9 HFTSQQLQQLEATFQRNR 26 (68)
T ss_dssp CCCHHHHHHHHHHHTTCS
T ss_pred CCCHHHHHHHHHHHHccC
Confidence 456788999999887653
No 39
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=36.34 E-value=30 Score=16.20 Aligned_cols=18 Identities=22% Similarity=0.156 Sum_probs=13.9
Q ss_pred cCCHHHHHHHHHHHhhcC
Q psy13041 63 FTTQERLDEVSEKSLKNL 80 (81)
Q Consensus 63 ~~t~~~~~~~~~f~~~~~ 80 (81)
..|.+++..|+..|..++
T Consensus 13 ~ft~~Q~~~Le~~F~~~~ 30 (73)
T 2l7z_A 13 PYTKVQLKELEREYATNK 30 (73)
T ss_dssp CSCHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHhhCC
Confidence 457889999999887653
No 40
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=35.32 E-value=33 Score=15.69 Aligned_cols=18 Identities=17% Similarity=0.067 Sum_probs=13.1
Q ss_pred cCCHHHHHHHHHHHhhcC
Q psy13041 63 FTTQERLDEVSEKSLKNL 80 (81)
Q Consensus 63 ~~t~~~~~~~~~f~~~~~ 80 (81)
..|.+++..++..|..++
T Consensus 7 ~ft~~q~~~Le~~F~~~~ 24 (67)
T 2k40_A 7 AFTQNQIEVLENVFRVNC 24 (67)
T ss_dssp CCCHHHHHHHHHHHTTCS
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 356788888888887643
No 41
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.28 E-value=32 Score=16.42 Aligned_cols=18 Identities=17% Similarity=0.060 Sum_probs=14.0
Q ss_pred cCCHHHHHHHHHHHhhcC
Q psy13041 63 FTTQERLDEVSEKSLKNL 80 (81)
Q Consensus 63 ~~t~~~~~~~~~f~~~~~ 80 (81)
..|.+++..|+..|..++
T Consensus 23 ~ft~~Q~~~Le~~F~~~~ 40 (80)
T 2dmt_A 23 VFTELQLMGLEKRFEKQK 40 (80)
T ss_dssp CCCHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 457889999999887653
No 42
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.84 E-value=32 Score=16.93 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=13.8
Q ss_pred CCHHHHHHHHHHHhhcC
Q psy13041 64 TTQERLDEVSEKSLKNL 80 (81)
Q Consensus 64 ~t~~~~~~~~~f~~~~~ 80 (81)
.|.++++.|+..|..++
T Consensus 20 ~t~~Ql~~Le~~F~~~~ 36 (89)
T 2dmp_A 20 KTQGQVKILEDSFLKSS 36 (89)
T ss_dssp CCHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHccCC
Confidence 57899999999987653
No 43
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=34.43 E-value=33 Score=14.93 Aligned_cols=16 Identities=13% Similarity=0.179 Sum_probs=11.7
Q ss_pred CCHHHHHHHHHHHhhc
Q psy13041 64 TTQERLDEVSEKSLKN 79 (81)
Q Consensus 64 ~t~~~~~~~~~f~~~~ 79 (81)
-|.+++..++..|..+
T Consensus 9 ~t~~q~~~Le~~F~~~ 24 (58)
T 3rkq_A 9 FSQAQVYELERRFKQQ 24 (58)
T ss_dssp CCHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHc
Confidence 4567888888888654
No 44
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=34.18 E-value=36 Score=15.66 Aligned_cols=18 Identities=11% Similarity=0.158 Sum_probs=13.4
Q ss_pred cCCHHHHHHHHHHHhhcC
Q psy13041 63 FTTQERLDEVSEKSLKNL 80 (81)
Q Consensus 63 ~~t~~~~~~~~~f~~~~~ 80 (81)
..|.+++..|+..|..++
T Consensus 8 ~ft~~Q~~~Le~~F~~~~ 25 (68)
T 1ftt_A 8 LFSQAQVYELERRFKQQK 25 (68)
T ss_dssp SCCHHHHHHHHHHHHHSS
T ss_pred ccCHHHHHHHHHHHHhCC
Confidence 456788899998887643
No 45
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=33.81 E-value=36 Score=15.10 Aligned_cols=15 Identities=20% Similarity=0.056 Sum_probs=11.7
Q ss_pred CCHHHHHHHHHHHhh
Q psy13041 64 TTQERLDEVSEKSLK 78 (81)
Q Consensus 64 ~t~~~~~~~~~f~~~ 78 (81)
.|.++++.++++|..
T Consensus 5 ft~~q~~~Le~~f~~ 19 (60)
T 1k61_A 5 FTKENVRILESWFAK 19 (60)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 457788888888876
No 46
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.02 E-value=36 Score=16.21 Aligned_cols=17 Identities=6% Similarity=-0.072 Sum_probs=13.1
Q ss_pred cCCHHHHHHHHHHHhhc
Q psy13041 63 FTTQERLDEVSEKSLKN 79 (81)
Q Consensus 63 ~~t~~~~~~~~~f~~~~ 79 (81)
..|.++++.|+.+|+.+
T Consensus 14 ~ft~~Q~~~Le~~F~~~ 30 (80)
T 2da4_A 14 QFSDRDLATLKKYWDNG 30 (80)
T ss_dssp CCCHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHhC
Confidence 34678889999888765
No 47
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=32.60 E-value=38 Score=16.13 Aligned_cols=18 Identities=22% Similarity=0.100 Sum_probs=13.6
Q ss_pred cCCHHHHHHHHHHHhhcC
Q psy13041 63 FTTQERLDEVSEKSLKNL 80 (81)
Q Consensus 63 ~~t~~~~~~~~~f~~~~~ 80 (81)
..|.+++..|+..|..++
T Consensus 13 ~ft~~Q~~~Le~~F~~~~ 30 (80)
T 2dms_A 13 TFTRAQLDVLEALFAKTR 30 (80)
T ss_dssp SCCHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHccC
Confidence 456788999998887653
No 48
>2pst_X Hypothetical protein PA2412; pyoverdine synthesis, non-ribosomal peptide synthesis cluste like family, COG3251, unknown function; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: d.100.2.1 PDB: 2gpf_A
Probab=32.37 E-value=3.2 Score=20.40 Aligned_cols=21 Identities=14% Similarity=0.308 Sum_probs=17.2
Q ss_pred cCCchHHHHHHHHHHhHHHHH
Q psy13041 22 GNPKGLPVAWDYVKKNWDYLL 42 (81)
Q Consensus 22 ~n~~~~~~~~~f~~~n~~~i~ 42 (81)
..+..+..-++|+.+||..+.
T Consensus 41 ~~~~sr~~CL~yIe~~WtDmR 61 (74)
T 2pst_X 41 GKSGLKKDCLAYIEEVWTDMR 61 (74)
T ss_dssp EEEECHHHHHHHHHHHCCCCS
T ss_pred CCCCCHHHHHHHHHHHcccCC
Confidence 456788999999999998753
No 49
>3ewt_E Tumor necrosis factor receptor superfamily member 6; calmodulin-peptide complex, FAS, death domain, calcium, calcium binding protein; 2.40A {Homo sapiens}
Probab=32.31 E-value=27 Score=13.29 Aligned_cols=13 Identities=31% Similarity=0.125 Sum_probs=9.2
Q ss_pred HHHHHHHHHhhcC
Q psy13041 68 RLDEVSEKSLKNL 80 (81)
Q Consensus 68 ~~~~~~~f~~~~~ 80 (81)
.++++++|...+-
T Consensus 12 ~~~~Vk~fvR~~g 24 (25)
T 3ewt_E 12 TLSQVKGFVRKNG 24 (26)
T ss_pred hHHHHHHHHHHcC
Confidence 3677888887653
No 50
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=32.29 E-value=64 Score=18.69 Aligned_cols=27 Identities=11% Similarity=-0.068 Sum_probs=21.5
Q ss_pred hhchHHHhhcccCCHHHHHHHHHHHhh
Q psy13041 52 FGRIIPSVCGKFTTQERLDEVSEKSLK 78 (81)
Q Consensus 52 l~~~i~~~~~~~~t~~~~~~~~~f~~~ 78 (81)
-.+.|..+...+-+++++.+...|++.
T Consensus 130 Re~~V~~iL~~~L~~eql~DY~~fv~m 156 (190)
T 3thf_A 130 RGVSIAGLLAKNLSADMCADYDYFINM 156 (190)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 346677777888899999999999864
No 51
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=31.86 E-value=39 Score=16.11 Aligned_cols=18 Identities=17% Similarity=0.204 Sum_probs=13.7
Q ss_pred cCCHHHHHHHHHHHhhcC
Q psy13041 63 FTTQERLDEVSEKSLKNL 80 (81)
Q Consensus 63 ~~t~~~~~~~~~f~~~~~ 80 (81)
..|.+++..|+..|..++
T Consensus 13 ~ft~~Q~~~Le~~F~~~~ 30 (80)
T 2cue_A 13 SFTQEQIEALEKEFERTH 30 (80)
T ss_dssp CSCHHHHHHHHHHHTTCS
T ss_pred ccCHHHHHHHHHHHhccC
Confidence 457888999998887643
No 52
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=31.50 E-value=41 Score=15.44 Aligned_cols=18 Identities=17% Similarity=0.211 Sum_probs=13.2
Q ss_pred cCCHHHHHHHHHHHhhcC
Q psy13041 63 FTTQERLDEVSEKSLKNL 80 (81)
Q Consensus 63 ~~t~~~~~~~~~f~~~~~ 80 (81)
..|.+++..|+..|..++
T Consensus 8 ~ft~~Q~~~Le~~F~~~~ 25 (68)
T 1zq3_P 8 TFTSSQIAELEQHFLQGR 25 (68)
T ss_dssp CCCHHHHHHHHHHHTTCS
T ss_pred CcCHHHHHHHHHHHhcCC
Confidence 456788888888887543
No 53
>1n0w_B Breast cancer type 2 susceptibility protein; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: j.97.1.1
Probab=31.43 E-value=14 Score=15.24 Aligned_cols=16 Identities=25% Similarity=0.212 Sum_probs=12.3
Q ss_pred CHHHHHHHHHHHhhcC
Q psy13041 65 TQERLDEVSEKSLKNL 80 (81)
Q Consensus 65 t~~~~~~~~~f~~~~~ 80 (81)
..+-++.++.||+.+.
T Consensus 19 akesL~Kvk~lF~E~~ 34 (35)
T 1n0w_B 19 AKESLDKVKNLFDEKE 34 (35)
T ss_dssp CHHHHHHTTTTTCCCC
T ss_pred hHHHHHHHHHHhhhcc
Confidence 4678899999987654
No 54
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=31.42 E-value=41 Score=15.89 Aligned_cols=18 Identities=11% Similarity=0.093 Sum_probs=13.8
Q ss_pred cCCHHHHHHHHHHHhhcC
Q psy13041 63 FTTQERLDEVSEKSLKNL 80 (81)
Q Consensus 63 ~~t~~~~~~~~~f~~~~~ 80 (81)
..|.+++..|+..|..++
T Consensus 15 ~ft~~Q~~~Le~~F~~~~ 32 (77)
T 1nk2_P 15 LFTKAQTYELERRFRQQR 32 (77)
T ss_dssp CCCHHHHHHHHHHHHHCS
T ss_pred cCCHHHHHHHHHHHhhcC
Confidence 457889999999887653
No 55
>1q87_A 39 kDa initiator binding protein; INR, core promoter, DNA binding protein; 2.32A {Trichomonas vaginalis} SCOP: e.47.1.1 PDB: 1q88_A 1q89_A
Probab=31.37 E-value=16 Score=21.50 Aligned_cols=44 Identities=16% Similarity=0.138 Sum_probs=31.3
Q ss_pred CCchHHHHHHHHHHhHHHHHHHhCCCchhhhchHHHhhcccCCHH
Q psy13041 23 NPKGLPVAWDYVKKNWDYLLKRFGLNHRVFGRIIPSVCGKFTTQE 67 (81)
Q Consensus 23 n~~~~~~~~~f~~~n~~~i~~~~~~~~~~l~~~i~~~~~~~~t~~ 67 (81)
.|.....+.+...+-|++|.+..++ ...+.-+|...+.+|+-++
T Consensus 28 ~~~~~~~Fk~~vi~iW~eiv~~~~i-~~~~~~fI~~aa~~F~~~~ 71 (221)
T 1q87_A 28 TPNEQETFRAKVDEIWFRLTQKTDG-TVMRDFLIEKAAEYFKQPE 71 (221)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSSSSS-EEEHHHHHHHHHHHHSCTT
T ss_pred CHHHHHHHHHHHHHHHHHHhccccc-cccHHHHHHHHHHHHhccc
Confidence 4455667778888888888888776 4567777777777776543
No 56
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=30.78 E-value=43 Score=15.59 Aligned_cols=18 Identities=39% Similarity=0.409 Sum_probs=13.6
Q ss_pred ccCCHHHHHHHHHHHhhc
Q psy13041 62 KFTTQERLDEVSEKSLKN 79 (81)
Q Consensus 62 ~~~t~~~~~~~~~f~~~~ 79 (81)
..-|.+++..++..|..+
T Consensus 11 t~ft~~Ql~~Le~~F~~~ 28 (74)
T 2ly9_A 11 AKKTKEQLAELKVSYLKN 28 (74)
T ss_dssp CCCCHHHHHHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHHHHc
Confidence 345678899999888754
No 57
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=30.66 E-value=48 Score=15.58 Aligned_cols=17 Identities=12% Similarity=0.139 Sum_probs=11.5
Q ss_pred cCCHHHHHHHHHHHhhc
Q psy13041 63 FTTQERLDEVSEKSLKN 79 (81)
Q Consensus 63 ~~t~~~~~~~~~f~~~~ 79 (81)
..|..++.+++..|..+
T Consensus 10 ~~t~~ql~~LE~~F~~~ 26 (69)
T 2l9r_A 10 HMSHTQVIELERKFSHQ 26 (69)
T ss_dssp CCCHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHhcC
Confidence 45667777777777654
No 58
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=29.85 E-value=43 Score=16.57 Aligned_cols=18 Identities=17% Similarity=-0.066 Sum_probs=14.1
Q ss_pred cCCHHHHHHHHHHHhhcC
Q psy13041 63 FTTQERLDEVSEKSLKNL 80 (81)
Q Consensus 63 ~~t~~~~~~~~~f~~~~~ 80 (81)
..|++++..|+..|..++
T Consensus 13 ~ft~~ql~~Le~~F~~~~ 30 (95)
T 2cuf_A 13 TWRKECLAVMESYFNENQ 30 (95)
T ss_dssp CCCHHHHHHHHHHHHHCS
T ss_pred cCCHHHHHHHHHHHhcCC
Confidence 457889999999987653
No 59
>2jpn_A DAR protein, ATP-dependent DNA helicase UVSW; bacteriophage helicase, hydrolase; NMR {Enterobacteria phage T4}
Probab=29.26 E-value=56 Score=15.95 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=18.9
Q ss_pred hchHHHhhcccCCHHHHHHHHHHHhhc
Q psy13041 53 GRIIPSVCGKFTTQERLDEVSEKSLKN 79 (81)
Q Consensus 53 ~~~i~~~~~~~~t~~~~~~~~~f~~~~ 79 (81)
..++.-+. ...|.+-++|++++.+.+
T Consensus 18 e~Fm~KI~-sC~T~dGl~ELEkyY~kR 43 (79)
T 2jpn_A 18 DEFMGKIA-SCQTLEGLEELEAYYKKR 43 (79)
T ss_dssp SSHHHHHH-TCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-cccccccHHHHHHHHHHh
Confidence 34554443 678899999999998753
No 60
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=29.13 E-value=47 Score=15.91 Aligned_cols=19 Identities=16% Similarity=0.006 Sum_probs=14.6
Q ss_pred ccCCHHHHHHHHHHHhhcC
Q psy13041 62 KFTTQERLDEVSEKSLKNL 80 (81)
Q Consensus 62 ~~~t~~~~~~~~~f~~~~~ 80 (81)
...|.+++..|+..|..++
T Consensus 25 t~ft~~Ql~~Le~~F~~~~ 43 (81)
T 1b8i_A 25 QTYTRYQTLELEKEFHTNH 43 (81)
T ss_dssp CCCCHHHHHHHHHHHHHCS
T ss_pred cccCHHHHHHHHHHHhcCC
Confidence 3567889999999987653
No 61
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=29.10 E-value=48 Score=15.69 Aligned_cols=17 Identities=18% Similarity=0.284 Sum_probs=12.3
Q ss_pred cCCHHHHHHHHHHHhhc
Q psy13041 63 FTTQERLDEVSEKSLKN 79 (81)
Q Consensus 63 ~~t~~~~~~~~~f~~~~ 79 (81)
-.|.+++.+|++.|..+
T Consensus 10 ~~~~~Ql~~LE~~F~~~ 26 (66)
T 3nau_A 10 KKTKEQIAHLKASFLQS 26 (66)
T ss_dssp -CCHHHHHHHHHHHHGG
T ss_pred hhhHHHHHHHHHHHhcC
Confidence 45778888888887654
No 62
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=28.91 E-value=48 Score=15.64 Aligned_cols=18 Identities=22% Similarity=0.139 Sum_probs=13.7
Q ss_pred cCCHHHHHHHHHHHhhcC
Q psy13041 63 FTTQERLDEVSEKSLKNL 80 (81)
Q Consensus 63 ~~t~~~~~~~~~f~~~~~ 80 (81)
..|.+++..|+..|..++
T Consensus 19 ~ft~~Q~~~Le~~F~~~~ 36 (77)
T 1puf_A 19 PYTKHQTLELEKEFLFNM 36 (77)
T ss_dssp CCCHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHhccC
Confidence 457788999998887643
No 63
>1m45_B IQ2, IQ2 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae}
Probab=28.45 E-value=32 Score=12.79 Aligned_cols=13 Identities=23% Similarity=0.309 Sum_probs=9.4
Q ss_pred HHHHHHHHhHHHH
Q psy13041 29 VAWDYVKKNWDYL 41 (81)
Q Consensus 29 ~~~~f~~~n~~~i 41 (81)
-+.+|+++|...+
T Consensus 4 qaikylqnnikgf 16 (26)
T 1m45_B 4 QAIKYLQNNIKGF 16 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHhccceE
Confidence 4668888888754
No 64
>3vej_A Ubiquitin-like protein MDY2; alpha helical, dimerization, homodimerization, protein bindi; 1.23A {Saccharomyces cerevisiae}
Probab=28.28 E-value=44 Score=14.36 Aligned_cols=33 Identities=12% Similarity=0.185 Sum_probs=26.2
Q ss_pred cccchHHHHHHHhhcCCchHH-HHHHHHHHhHHH
Q psy13041 8 IRSQDYFTVIVMVAGNPKGLP-VAWDYVKKNWDY 40 (81)
Q Consensus 8 v~~qd~~~~~~~~~~n~~~~~-~~~~f~~~n~~~ 40 (81)
|+=.|+..++..--.|+.... .+++-++..|+-
T Consensus 6 VPWd~Ie~lL~~~~~d~~~a~~~~L~RLqkGWel 39 (41)
T 3vej_A 6 VPWDDIEALLKNNFENDQAAVRQVMERLQKGWSL 39 (41)
T ss_dssp SCHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhcChHHHHHHHHHHHHhcccc
Confidence 677888889988666777665 888999999963
No 65
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=28.16 E-value=53 Score=16.36 Aligned_cols=18 Identities=22% Similarity=0.156 Sum_probs=13.8
Q ss_pred cCCHHHHHHHHHHHhhcC
Q psy13041 63 FTTQERLDEVSEKSLKNL 80 (81)
Q Consensus 63 ~~t~~~~~~~~~f~~~~~ 80 (81)
-.|.+++.+|++.|..++
T Consensus 17 ~~t~~Ql~~Le~~F~~~~ 34 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSS 34 (89)
T ss_dssp CCCHHHHHHHHHHHHHCS
T ss_pred cCCHHHHHHHHHHHHhcC
Confidence 457889999998887643
No 66
>2lpd_A Uncharacterized protein; infectious disease, melioidosis, seattle structural genomics for infectious disease, ssgcid, drug target; NMR {Burkholderia pseudomallei}
Probab=28.05 E-value=4.9 Score=20.67 Aligned_cols=21 Identities=14% Similarity=0.438 Sum_probs=17.4
Q ss_pred cCCchHHHHHHHHHHhHHHHH
Q psy13041 22 GNPKGLPVAWDYVKKNWDYLL 42 (81)
Q Consensus 22 ~n~~~~~~~~~f~~~n~~~i~ 42 (81)
..+..+..-++|+.+||..+.
T Consensus 54 ~~~~sr~~CL~yIe~~WTDMR 74 (95)
T 2lpd_A 54 GEPATKQQCLQRIEQLWTDMV 74 (95)
T ss_dssp EEEECHHHHHHHHHTTTTTCC
T ss_pred CCCCCHHHHHHHHHHHccCCC
Confidence 457788999999999998753
No 67
>3e8t_A Takeout 1, takeout-like protein 1; transport protein; HET: UQ8; 1.30A {Epiphyas postvittana} PDB: 3e8w_A*
Probab=27.84 E-value=90 Score=17.81 Aligned_cols=26 Identities=23% Similarity=0.529 Sum_probs=19.9
Q ss_pred cCCchHHHHHHHHHHhHHHHHHHhCC
Q psy13041 22 GNPKGLPVAWDYVKKNWDYLLKRFGL 47 (81)
Q Consensus 22 ~n~~~~~~~~~f~~~n~~~i~~~~~~ 47 (81)
+++.-.+.+-+|+-+||..+.+-+.+
T Consensus 166 g~~~L~~~~n~~iN~nw~~i~~e~~p 191 (220)
T 3e8t_A 166 GNKELSDTMLTFLNQNWKQVSEEFGK 191 (220)
T ss_dssp GCHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCHHHHHHHHHH
Confidence 34455567779999999998888765
No 68
>1kn1_B Allophycocyanin; helix-turn-helix, electron transport; HET: CYC; 2.20A {Porphyra yezoensis} SCOP: a.1.1.3 PDB: 1all_B* 3dbj_B* 2v8a_B* 1b33_B* 2vjt_B*
Probab=27.37 E-value=73 Score=17.68 Aligned_cols=27 Identities=15% Similarity=0.276 Sum_probs=20.3
Q ss_pred hhchHH--HhhcccCCHHHHHHHHHHHhh
Q psy13041 52 FGRIIP--SVCGKFTTQERLDEVSEKSLK 78 (81)
Q Consensus 52 l~~~i~--~~~~~~~t~~~~~~~~~f~~~ 78 (81)
+..++. ..-++|-+..+++.++.+|..
T Consensus 5 ~t~~i~~AD~~gRyls~~eL~~l~~~~~~ 33 (161)
T 1kn1_B 5 ITSVINSSDVQGKYLDSSAIEKLKGYFQT 33 (161)
T ss_dssp HHHHHHHHHTTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 455555 545688899999999999864
No 69
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.29 E-value=53 Score=15.03 Aligned_cols=15 Identities=13% Similarity=-0.020 Sum_probs=11.0
Q ss_pred CHHHHHHHHHHHhhc
Q psy13041 65 TQERLDEVSEKSLKN 79 (81)
Q Consensus 65 t~~~~~~~~~f~~~~ 79 (81)
+.+++..|+..|..+
T Consensus 11 ~~~Ql~~Le~~F~~~ 25 (64)
T 2e19_A 11 LKNLLSLLKAYYALN 25 (64)
T ss_dssp CHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHhcC
Confidence 467888888888654
No 70
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=26.96 E-value=54 Score=15.59 Aligned_cols=18 Identities=17% Similarity=0.167 Sum_probs=13.8
Q ss_pred cCCHHHHHHHHHHHhhcC
Q psy13041 63 FTTQERLDEVSEKSLKNL 80 (81)
Q Consensus 63 ~~t~~~~~~~~~f~~~~~ 80 (81)
..|.+++..|+..|..++
T Consensus 24 ~ft~~Q~~~Le~~F~~~~ 41 (81)
T 1fjl_A 24 TFSASQLDELERAFERTQ 41 (81)
T ss_dssp CCCHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHHcC
Confidence 456888999999887653
No 71
>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron transport; HET: HEM; 1.30A {Geobacter sulfurreducens}
Probab=26.94 E-value=45 Score=15.47 Aligned_cols=18 Identities=6% Similarity=0.093 Sum_probs=14.5
Q ss_pred cCCHHHHHHHHHHHhhcC
Q psy13041 63 FTTQERLDEVSEKSLKNL 80 (81)
Q Consensus 63 ~~t~~~~~~~~~f~~~~~ 80 (81)
.-|+++++.|-+|+.+..
T Consensus 67 ~ls~~ei~~l~~yi~~~~ 84 (85)
T 3cu4_A 67 MIPPADALKIGEYVVASF 84 (85)
T ss_dssp TSCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhC
Confidence 457899999999987654
No 72
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=26.56 E-value=56 Score=15.11 Aligned_cols=18 Identities=22% Similarity=0.119 Sum_probs=13.1
Q ss_pred cCCHHHHHHHHHHHhhcC
Q psy13041 63 FTTQERLDEVSEKSLKNL 80 (81)
Q Consensus 63 ~~t~~~~~~~~~f~~~~~ 80 (81)
..|.+++..|+..|..++
T Consensus 15 ~ft~~q~~~Le~~F~~~~ 32 (75)
T 2m0c_A 15 TFTSYQLEELEKVFQKTH 32 (75)
T ss_dssp SSCHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 346788888888887543
No 73
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Probab=26.36 E-value=55 Score=15.02 Aligned_cols=17 Identities=12% Similarity=0.048 Sum_probs=13.7
Q ss_pred cCCHHHHHHHHHHHhhc
Q psy13041 63 FTTQERLDEVSEKSLKN 79 (81)
Q Consensus 63 ~~t~~~~~~~~~f~~~~ 79 (81)
--|+++++.|-+|+.+.
T Consensus 63 ~Lsd~ei~~l~~yl~~l 79 (80)
T 1ayg_A 63 NVTDAEAKQLAQWILSI 79 (80)
T ss_dssp CCCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 35789999999998764
No 74
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=26.23 E-value=56 Score=15.59 Aligned_cols=17 Identities=6% Similarity=0.139 Sum_probs=13.4
Q ss_pred cCCHHHHHHHHHHHhhc
Q psy13041 63 FTTQERLDEVSEKSLKN 79 (81)
Q Consensus 63 ~~t~~~~~~~~~f~~~~ 79 (81)
..|.+++..|+..|..+
T Consensus 28 ~ft~~Q~~~Le~~F~~~ 44 (84)
T 2kt0_A 28 VFSSTQLCVLNDRFQRQ 44 (84)
T ss_dssp CCCHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHhC
Confidence 45788999999888754
No 75
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=26.06 E-value=55 Score=15.86 Aligned_cols=18 Identities=17% Similarity=-0.058 Sum_probs=13.9
Q ss_pred ccCCHHHHHHHHHHHhhc
Q psy13041 62 KFTTQERLDEVSEKSLKN 79 (81)
Q Consensus 62 ~~~t~~~~~~~~~f~~~~ 79 (81)
...|.+++..|+..|..+
T Consensus 33 t~ft~~Ql~~Le~~F~~~ 50 (88)
T 2r5y_A 33 TSYTRYQTLELEKEFHFN 50 (88)
T ss_dssp CCCCHHHHHHHHHHHTTC
T ss_pred CCcCHHHHHHHHHHHhcc
Confidence 355788999999988754
No 76
>2c7l_B Phycoerythrocyanin beta chain; phycoviolobilin, phycocyanobilin, bIle pigment, chromophore, electron transport, photosynthesis; HET: BLA CYC; 2.85A {Mastigocladus laminosus} PDB: 2c7k_B* 2c7j_B*
Probab=25.91 E-value=78 Score=17.82 Aligned_cols=27 Identities=11% Similarity=0.400 Sum_probs=20.0
Q ss_pred hhchHH--HhhcccCCHHHHHHHHHHHhh
Q psy13041 52 FGRIIP--SVCGKFTTQERLDEVSEKSLK 78 (81)
Q Consensus 52 l~~~i~--~~~~~~~t~~~~~~~~~f~~~ 78 (81)
+..++. ..-.+|-+..+++.++.+|+.
T Consensus 5 ~t~~i~~AD~~gRyls~~EL~~l~~~~~~ 33 (172)
T 2c7l_B 5 FSRVVEQADKKGAYLSNDEINALQAIVAD 33 (172)
T ss_dssp HHHHHHHHHTTTCCCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Confidence 555655 444688889999999999864
No 77
>3crd_A Raidd; caspase recruitment domain, apoptosis, homophilic interaction; NMR {Homo sapiens} SCOP: a.77.1.3
Probab=25.72 E-value=71 Score=15.93 Aligned_cols=40 Identities=10% Similarity=0.041 Sum_probs=24.9
Q ss_pred HHHHHhHHHHHHHhCCCchhhhchHHHhhcccCCHHHHHHHHH
Q psy13041 32 DYVKKNWDYLLKRFGLNHRVFGRIIPSVCGKFTTQERLDEVSE 74 (81)
Q Consensus 32 ~f~~~n~~~i~~~~~~~~~~l~~~i~~~~~~~~t~~~~~~~~~ 74 (81)
+.++.|+..+...+......+..++ ....-|+++.+++++
T Consensus 7 ~~L~~~r~~L~~~l~~~~~lld~L~---~~~VLt~~~~e~I~~ 46 (100)
T 3crd_A 7 QVLRSLRLELGAEVLVEGLVLQYLY---QEGILTENHIQEINA 46 (100)
T ss_dssp HHHHHHHHHHHHSSCSSCSSHHHHH---HHTSSCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCcchhHHHHHH---HCCCCCHHHHHHHHc
Confidence 4578888888888775322455554 235666677666653
No 78
>2vml_B Phycocyanin beta chain; photosynthesis, light-harvesting, electron transport, transp chromophore, bIle pigment, phycobilisome; HET: CYC; 2.40A {Gloeobacter violaceus} PDB: 2vjr_B*
Probab=25.28 E-value=88 Score=17.60 Aligned_cols=27 Identities=19% Similarity=0.431 Sum_probs=19.9
Q ss_pred hhchHHHh--hcccCCHHHHHHHHHHHhh
Q psy13041 52 FGRIIPSV--CGKFTTQERLDEVSEKSLK 78 (81)
Q Consensus 52 l~~~i~~~--~~~~~t~~~~~~~~~f~~~ 78 (81)
+..++... -.+|-+..+++.++.+|+.
T Consensus 5 ~t~~i~~AD~~gRyls~~EL~~l~~~~~~ 33 (172)
T 2vml_B 5 FTKAIVAADLRGSFLSEQELNQLTNLVKE 33 (172)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Confidence 55565443 5678888999999998864
No 79
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=24.92 E-value=62 Score=14.96 Aligned_cols=16 Identities=13% Similarity=0.104 Sum_probs=12.3
Q ss_pred cCCHHHHHHHHHHHhh
Q psy13041 63 FTTQERLDEVSEKSLK 78 (81)
Q Consensus 63 ~~t~~~~~~~~~f~~~ 78 (81)
..|.+++..|+..|..
T Consensus 7 ~ft~~Q~~~Le~~F~~ 22 (72)
T 1uhs_A 7 TMTEDQVEILEYNFNK 22 (72)
T ss_dssp CCCHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHc
Confidence 4567888889888874
No 80
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=24.86 E-value=60 Score=14.80 Aligned_cols=16 Identities=6% Similarity=0.165 Sum_probs=13.2
Q ss_pred CCHHHHHHHHHHHhhc
Q psy13041 64 TTQERLDEVSEKSLKN 79 (81)
Q Consensus 64 ~t~~~~~~~~~f~~~~ 79 (81)
-|+++++.+-+|+.+.
T Consensus 63 Ls~~ei~~l~~yl~~l 78 (79)
T 2d0s_A 63 VAEADIEKIVRWVLTL 78 (79)
T ss_dssp SCHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHhC
Confidence 4789999999998764
No 81
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=24.76 E-value=32 Score=17.26 Aligned_cols=15 Identities=33% Similarity=0.747 Sum_probs=10.5
Q ss_pred CchHHHHHHHHHHhH
Q psy13041 24 PKGLPVAWDYVKKNW 38 (81)
Q Consensus 24 ~~~~~~~~~f~~~n~ 38 (81)
+.....+|+|+++|=
T Consensus 30 ~evvk~lW~YIK~n~ 44 (93)
T 1v31_A 30 PRIIAAIWHYVKARK 44 (93)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcc
Confidence 345567899988764
No 82
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=24.31 E-value=84 Score=16.31 Aligned_cols=66 Identities=15% Similarity=0.271 Sum_probs=41.9
Q ss_pred CCccccchHHHHHHHhhcCCc---hHHHHHHHHHHhHHHHHHHhCCCchhhhchHHHhhcccCCHHHHHHHHHHHhh
Q psy13041 5 EKNIRSQDYFTVIVMVAGNPK---GLPVAWDYVKKNWDYLLKRFGLNHRVFGRIIPSVCGKFTTQERLDEVSEKSLK 78 (81)
Q Consensus 5 ~~~v~~qd~~~~~~~~~~n~~---~~~~~~~f~~~n~~~i~~~~~~~~~~l~~~i~~~~~~~~t~~~~~~~~~f~~~ 78 (81)
|++|+.+|+.-++.-+.+.-. -..++-....+. ..+.......|..++...-++++++.+.+-+..
T Consensus 20 P~GVP~~Dy~PLlALL~r~Ltdeev~~Va~~L~~~~--------~i~~~dI~~~I~~vt~~~Ps~eDI~RV~arLaa 88 (103)
T 2kvc_A 20 PEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLG--------DFDQIDIGVVITHFTDELPSPEDVERVRARLAA 88 (103)
T ss_dssp TTCCCHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHT--------SSCSSCHHHHHHSCCSSCSCHHHHHHHHHHHGG
T ss_pred CCCCCCcchHHHHHHHhccCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHh
Confidence 456899999777776643222 122222322222 122345788888999999999999999887643
No 83
>2xqo_A Cellulosome enzyme, dockerin type I; hydrolase; HET: MSE CTR; 1.40A {Clostridium thermocellum}
Probab=24.28 E-value=95 Score=18.08 Aligned_cols=39 Identities=10% Similarity=0.213 Sum_probs=25.5
Q ss_pred ccchHHHHHHHhhcCCchHHHHHHHHHHhHHHHHHHhCCC
Q psy13041 9 RSQDYFTVIVMVAGNPKGLPVAWDYVKKNWDYLLKRFGLN 48 (81)
Q Consensus 9 ~~qd~~~~~~~~~~n~~~~~~~~~f~~~n~~~i~~~~~~~ 48 (81)
..|++......+... .-..+..+-+.|||+.|..++|-.
T Consensus 42 Sk~e~ia~as~l~vs-eVKa~ikk~vDEHwDli~~~~Gf~ 80 (243)
T 2xqo_A 42 SKHELIARASSLKVS-EVKAIIKKQVDEHWDVIRDVCGFK 80 (243)
T ss_dssp CHHHHHHHHHHCCHH-HHHHHHHHHHHHTHHHHHHHHCCS
T ss_pred cHHHHHHHhccccHH-HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 345554444444322 344567788999999999999864
No 84
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=24.23 E-value=63 Score=15.94 Aligned_cols=18 Identities=17% Similarity=0.111 Sum_probs=14.2
Q ss_pred cCCHHHHHHHHHHHhhcC
Q psy13041 63 FTTQERLDEVSEKSLKNL 80 (81)
Q Consensus 63 ~~t~~~~~~~~~f~~~~~ 80 (81)
..|.+++..++..|..++
T Consensus 23 ~ft~~Ql~~Le~~F~~~~ 40 (93)
T 3a01_A 23 SFTRIQVAELEKRFHKQK 40 (93)
T ss_dssp CCCHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHcCC
Confidence 457899999999987653
No 85
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=24.10 E-value=1.2e+02 Score=17.83 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=24.6
Q ss_pred cccchHHHHHHHhhcCCchHHHHHHHHHHhHHHHHH
Q psy13041 8 IRSQDYFTVIVMVAGNPKGLPVAWDYVKKNWDYLLK 43 (81)
Q Consensus 8 v~~qd~~~~~~~~~~n~~~~~~~~~f~~~n~~~i~~ 43 (81)
+..+++..+...+..+....++|-+|+++|-+.+..
T Consensus 216 l~~~~~~~l~~~v~~~~~~~~vA~~wl~~~~~~~~~ 251 (256)
T 3l6g_A 216 WTTKDMEAVMLDIQNGKTPEEAAKNWIKDHQKEVDK 251 (256)
T ss_dssp CCHHHHHHHHHHHHTTCCHHHHHHHHHHHTHHHHHG
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHCHHHHHH
Confidence 445566666655644455678899999999776644
No 86
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=23.90 E-value=35 Score=17.57 Aligned_cols=14 Identities=14% Similarity=0.041 Sum_probs=9.7
Q ss_pred chHHHHHHHHHHhH
Q psy13041 25 KGLPVAWDYVKKNW 38 (81)
Q Consensus 25 ~~~~~~~~f~~~n~ 38 (81)
.....+|+|+++|-
T Consensus 39 eVvk~lW~YIK~nn 52 (101)
T 1v32_A 39 DVSDTIAKYISKEG 52 (101)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhc
Confidence 34456899998764
No 87
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=23.80 E-value=80 Score=15.89 Aligned_cols=24 Identities=4% Similarity=-0.115 Sum_probs=17.2
Q ss_pred HHHhhcccCCHHHHHHHHHHHhhc
Q psy13041 56 IPSVCGKFTTQERLDEVSEKSLKN 79 (81)
Q Consensus 56 i~~~~~~~~t~~~~~~~~~f~~~~ 79 (81)
+.++=-...++++-+++++||+..
T Consensus 62 i~G~~w~~l~~~~K~~L~~~~~~l 85 (93)
T 3mab_A 62 VQGIRWHGLDEAKKIELKKFHQSL 85 (93)
T ss_dssp HHTSCGGGSCHHHHHHHHHHHHHH
T ss_pred HcCCcHHHCCHHHHHHHHHHHHHh
Confidence 333333577889999999999763
No 88
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=23.71 E-value=64 Score=15.98 Aligned_cols=19 Identities=21% Similarity=0.088 Sum_probs=14.7
Q ss_pred ccCCHHHHHHHHHHHhhcC
Q psy13041 62 KFTTQERLDEVSEKSLKNL 80 (81)
Q Consensus 62 ~~~t~~~~~~~~~f~~~~~ 80 (81)
...|.+++..|+..|..++
T Consensus 39 t~ft~~Ql~~Le~~F~~~~ 57 (97)
T 1b72_A 39 TNFTTRQLTELEKEFHFNK 57 (97)
T ss_dssp CCCCHHHHHHHHHHHTTCS
T ss_pred cCcCHHHHHHHHHHHhccC
Confidence 4567899999999987653
No 89
>2dt7_A Splicing factor 3A subunit 3; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.52 E-value=53 Score=13.69 Aligned_cols=11 Identities=36% Similarity=0.462 Sum_probs=5.2
Q ss_pred HHHHHHHHHhh
Q psy13041 68 RLDEVSEKSLK 78 (81)
Q Consensus 68 ~~~~~~~f~~~ 78 (81)
+++++++|-+.
T Consensus 18 rlk~Ike~Hrr 28 (38)
T 2dt7_A 18 RLKQIKEFHRK 28 (38)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHHh
Confidence 34455555444
No 90
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*
Probab=23.43 E-value=65 Score=14.69 Aligned_cols=16 Identities=6% Similarity=0.200 Sum_probs=13.1
Q ss_pred CCHHHHHHHHHHHhhc
Q psy13041 64 TTQERLDEVSEKSLKN 79 (81)
Q Consensus 64 ~t~~~~~~~~~f~~~~ 79 (81)
-|+++++.|-+|+.+.
T Consensus 66 ls~~ei~~l~~yl~~l 81 (82)
T 2exv_A 66 VSDDEAQTLAKWVLSQ 81 (82)
T ss_dssp CCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHhC
Confidence 4789999999998764
No 91
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1
Probab=23.43 E-value=35 Score=17.12 Aligned_cols=14 Identities=21% Similarity=0.532 Sum_probs=9.5
Q ss_pred chHHHHHHHHHHhH
Q psy13041 25 KGLPVAWDYVKKNW 38 (81)
Q Consensus 25 ~~~~~~~~f~~~n~ 38 (81)
......|+|+++|=
T Consensus 31 evvk~lW~YIK~n~ 44 (93)
T 1uhr_A 31 VIIQALWQYIKTHK 44 (93)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcc
Confidence 34457888888663
No 92
>3o18_A C-phycocyanin alpha subunit; phycobilisome, photosynthesis, light harvesting, cyanobacter; HET: CYC; 1.35A {Thermosynechococcus vulcanus} SCOP: a.1.1.3 PDB: 1i7y_A* 1on7_A* 1ktp_A* 3o2c_A* 3l0f_A* 1jbo_A* 3kvs_A* 3brp_A* 1phn_A* 2bv8_A* 1f99_A* 1gh0_A* 2uum_A* 1ha7_A* 1cpc_A* 2uul_C* 2uul_A* 2uun_A*
Probab=22.93 E-value=1e+02 Score=17.12 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=19.8
Q ss_pred hhchHHH--hhcccCCHHHHHHHHHHHhh
Q psy13041 52 FGRIIPS--VCGKFTTQERLDEVSEKSLK 78 (81)
Q Consensus 52 l~~~i~~--~~~~~~t~~~~~~~~~f~~~ 78 (81)
+..+|.. .-++|-+..+++.++.||+.
T Consensus 5 ~t~~i~~AD~~gRyls~~EL~~l~~~~~~ 33 (162)
T 3o18_A 5 ITEAIAAADTQGRFLSNTELQAVDGRFKR 33 (162)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence 4555544 34688899999999999864
No 93
>2oj4_A RGS3, regulator of G-protein signaling 3, RGP3; RGS domain, signaling protein inhibitor; 2.30A {Homo sapiens}
Probab=22.83 E-value=50 Score=16.91 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=16.0
Q ss_pred HHHhhcCCchHHHHHHHHHHh
Q psy13041 17 IVMVAGNPKGLPVAWDYVKKN 37 (81)
Q Consensus 17 ~~~~~~n~~~~~~~~~f~~~n 37 (81)
+..+..+|.|+..+-+|+...
T Consensus 11 l~~iL~~~~g~~~F~~Fl~~e 31 (127)
T 2oj4_A 11 LEKLLVHKYGLAVFQAFLRTE 31 (127)
T ss_dssp HHHHHTCHHHHHHHHHHHHHT
T ss_pred HHHHHCCHHHHHHHHHHHHHc
Confidence 455667899999888888754
No 94
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=22.63 E-value=58 Score=16.71 Aligned_cols=51 Identities=8% Similarity=0.143 Sum_probs=33.2
Q ss_pred cccchHHHHHHHhhcCCchHHHHHHHHHHhH--HHHHHHhCCCchhhhchHHH
Q psy13041 8 IRSQDYFTVIVMVAGNPKGLPVAWDYVKKNW--DYLLKRFGLNHRVFGRIIPS 58 (81)
Q Consensus 8 v~~qd~~~~~~~~~~n~~~~~~~~~f~~~n~--~~i~~~~~~~~~~l~~~i~~ 58 (81)
+...++-.+...+.-......++|-|+.++. +.|.+++|.+-....+++..
T Consensus 5 mT~~eFe~~~~~l~~~~~~~~~A~lyYv~g~tQ~eIA~~lGiSR~~VsrlL~~ 57 (101)
T 2w7n_A 5 LTESQFQEAIQGLEVGQQTIEIARGVLVDGKPQATFATSLGLTRGAVSQAVHR 57 (101)
T ss_dssp CCHHHHHHHHTTCCCCHHHHHHHHHHHTTCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHccCChHHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 4455565666555445566778888888765 58888888654445566544
No 95
>2aze_C Retinoblastoma-associated protein; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: j.119.1.1
Probab=22.59 E-value=20 Score=15.57 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=15.6
Q ss_pred hHHHhhcccCCHHHHHHHHHHHh
Q psy13041 55 IIPSVCGKFTTQERLDEVSEKSL 77 (81)
Q Consensus 55 ~i~~~~~~~~t~~~~~~~~~f~~ 77 (81)
++-++.+.|-+.+..+++.+.+.
T Consensus 3 ~LvSiGEsFg~~~rFQKINqMvn 25 (46)
T 2aze_C 3 ILVSIGESFGTSEKFQKINQMVC 25 (46)
T ss_dssp EEEESSCTTTHHHHHHHHHHHHH
T ss_pred EEeehhhhhCchHHHHHHHHHHh
Confidence 34456677777777777777654
No 96
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=22.49 E-value=28 Score=16.48 Aligned_cols=16 Identities=31% Similarity=0.372 Sum_probs=11.6
Q ss_pred CCHHHHHHHHHHHhhc
Q psy13041 64 TTQERLDEVSEKSLKN 79 (81)
Q Consensus 64 ~t~~~~~~~~~f~~~~ 79 (81)
.|.++++.|+..|..+
T Consensus 24 ft~~Ql~~Le~~f~~~ 39 (80)
T 2da3_A 24 ITPEQLEILYQKYLLD 39 (80)
T ss_dssp CCTTTHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhc
Confidence 4567788888888654
No 97
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=22.34 E-value=72 Score=14.79 Aligned_cols=16 Identities=13% Similarity=0.057 Sum_probs=12.5
Q ss_pred cCCHHHHHHHHHHHhh
Q psy13041 63 FTTQERLDEVSEKSLK 78 (81)
Q Consensus 63 ~~t~~~~~~~~~f~~~ 78 (81)
..|.+++..|+..|..
T Consensus 8 ~ft~~Q~~~Le~~F~~ 23 (73)
T 2hi3_A 8 GPTEDQVEILEYNFNK 23 (73)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 4577888999988873
No 98
>3r2v_A PB2 C-terminal subunit; structural genomics, seattle structural genomics center for infectious disease, ssgcid, polymerase BASI H3N2, H1N1; 1.30A {Influenza a virus} PDB: 2vy6_A 3cw4_A 3l56_A 3kc6_A 3khw_A 2gmo_A 2jdq_D
Probab=22.29 E-value=42 Score=19.11 Aligned_cols=18 Identities=11% Similarity=0.619 Sum_probs=13.3
Q ss_pred HHHHHHHhHHHHHHHhCC
Q psy13041 30 AWDYVKKNWDYLLKRFGL 47 (81)
Q Consensus 30 ~~~f~~~n~~~i~~~~~~ 47 (81)
.+.|+..||+.+.-.+..
T Consensus 12 tYqwiirNwe~vKiQws~ 29 (216)
T 3r2v_A 12 TYQWIIRNWEAVKIQWSQ 29 (216)
T ss_dssp HHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHhhhHhhhhhhcc
Confidence 568899999877666543
No 99
>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A*
Probab=22.12 E-value=66 Score=14.33 Aligned_cols=17 Identities=6% Similarity=0.048 Sum_probs=13.5
Q ss_pred cCCHHHHHHHHHHHhhc
Q psy13041 63 FTTQERLDEVSEKSLKN 79 (81)
Q Consensus 63 ~~t~~~~~~~~~f~~~~ 79 (81)
--|+++++.+-+|+.+.
T Consensus 54 ~ls~~ei~~l~~yl~~~ 70 (71)
T 1c75_A 54 IAKGAEAEAVAAWLAEK 70 (71)
T ss_dssp SSCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 35789999999998764
No 100
>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1
Probab=21.67 E-value=73 Score=14.61 Aligned_cols=16 Identities=25% Similarity=0.225 Sum_probs=13.1
Q ss_pred CCHHHHHHHHHHHhhc
Q psy13041 64 TTQERLDEVSEKSLKN 79 (81)
Q Consensus 64 ~t~~~~~~~~~f~~~~ 79 (81)
-|+++++.+-+|+.+.
T Consensus 62 Lsd~ei~~l~~yi~~~ 77 (78)
T 1gks_A 62 ADREDLVKAIEYMLST 77 (78)
T ss_dssp BCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhh
Confidence 4689999999998764
No 101
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=21.57 E-value=75 Score=16.08 Aligned_cols=18 Identities=0% Similarity=-0.270 Sum_probs=13.8
Q ss_pred cCCHHHHHHHHHHHhhcC
Q psy13041 63 FTTQERLDEVSEKSLKNL 80 (81)
Q Consensus 63 ~~t~~~~~~~~~f~~~~~ 80 (81)
..|.+++..|+..|..++
T Consensus 15 ~ft~~Ql~~LE~~F~~~~ 32 (99)
T 1lfb_A 15 KWGPASQQILFQAYERQK 32 (99)
T ss_dssp CCCHHHHHHHHHHHTTCS
T ss_pred CcCHHHHHHHHHHHhcCC
Confidence 347889999999887653
No 102
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.21 E-value=89 Score=15.43 Aligned_cols=17 Identities=18% Similarity=-0.023 Sum_probs=10.0
Q ss_pred CCchHHHHHHHHHHhHH
Q psy13041 23 NPKGLPVAWDYVKKNWD 39 (81)
Q Consensus 23 n~~~~~~~~~f~~~n~~ 39 (81)
+....+.|.+||.+|-.
T Consensus 45 ~n~n~e~A~ewL~~h~~ 61 (85)
T 2dkl_A 45 NNMNLDQAMSALLEKKV 61 (85)
T ss_dssp TTSCHHHHHHHHHTTSC
T ss_pred cCCCHHHHHHHHHHCcC
Confidence 34456666777766643
No 103
>2lky_A Uncharacterized protein; infectious disease, tuberculosis, DUF proteins, ssgcid, STRU genomics; NMR {Mycobacterium smegmatis str}
Probab=21.02 E-value=1.1e+02 Score=16.21 Aligned_cols=67 Identities=10% Similarity=0.230 Sum_probs=41.4
Q ss_pred CCccccchHHHHHHHhhcCCch--HHHHHHHHHHhHHHHHHHhCCCchhhhchHHHhhcccCCHHHHHHHHHHHhh
Q psy13041 5 EKNIRSQDYFTVIVMVAGNPKG--LPVAWDYVKKNWDYLLKRFGLNHRVFGRIIPSVCGKFTTQERLDEVSEKSLK 78 (81)
Q Consensus 5 ~~~v~~qd~~~~~~~~~~n~~~--~~~~~~f~~~n~~~i~~~~~~~~~~l~~~i~~~~~~~~t~~~~~~~~~f~~~ 78 (81)
|++|+.+|+.-++.-+.+.-.. ...+-..+.+. -..+...+...|..++...-++++++.+.+-+..
T Consensus 22 P~GVP~~Dy~PLLALL~r~Ltdeev~~Va~~L~~~-------~~i~~~dI~~~I~~vt~~~Ps~eDI~RV~arLaa 90 (112)
T 2lky_A 22 PEGVPGPDRVPLLALLTRRLTNDEIKAIAEDLEKR-------AHFDHIDIGVLITQMTDEMPREEDIERVRRHLAL 90 (112)
T ss_dssp SSCCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH-------CCCSCCCSHHHHHHHTTCCCCHHHHHHHHHHHHT
T ss_pred CCCCCCcchHHHHHHHcccCCHHHHHHHHHHHHHc-------CCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHh
Confidence 4568899987777765432221 12222222222 1122345778888999999999999999887643
No 104
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Probab=20.80 E-value=75 Score=14.42 Aligned_cols=17 Identities=24% Similarity=0.083 Sum_probs=13.6
Q ss_pred cCCHHHHHHHHHHHhhc
Q psy13041 63 FTTQERLDEVSEKSLKN 79 (81)
Q Consensus 63 ~~t~~~~~~~~~f~~~~ 79 (81)
.-++++++.|-+|+.+.
T Consensus 65 ~ls~~ei~~l~~yl~~l 81 (82)
T 1cch_A 65 PVTEEEAKILAEWVLSL 81 (82)
T ss_dssp SCCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 35789999999998764
No 105
>2dlv_A RGS18, regulator of G-protein signaling 18; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.78 E-value=45 Score=17.48 Aligned_cols=21 Identities=14% Similarity=0.219 Sum_probs=16.9
Q ss_pred HHHhhcCCchHHHHHHHHHHh
Q psy13041 17 IVMVAGNPKGLPVAWDYVKKN 37 (81)
Q Consensus 17 ~~~~~~n~~~~~~~~~f~~~n 37 (81)
+..+..+|.|+..+.+|++..
T Consensus 19 l~~iL~~~~~~~~F~~Fl~~e 39 (140)
T 2dlv_A 19 FDKLLSHRDGLEAFTRFLKTE 39 (140)
T ss_dssp HHHHHHSHHHHHHHHHHHHHT
T ss_pred HHHHHCChHHHHHHHHHHHHh
Confidence 456678999999999998854
No 106
>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}
Probab=20.71 E-value=76 Score=14.47 Aligned_cols=16 Identities=13% Similarity=0.248 Sum_probs=12.9
Q ss_pred CCHHHHHHHHHHHhhc
Q psy13041 64 TTQERLDEVSEKSLKN 79 (81)
Q Consensus 64 ~t~~~~~~~~~f~~~~ 79 (81)
-|+++++.|-+|+.+.
T Consensus 71 ls~~ei~~l~~yl~sl 86 (87)
T 2zxy_A 71 LSDAELKALADFILSH 86 (87)
T ss_dssp CCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHhc
Confidence 4678999999998764
No 107
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=20.69 E-value=79 Score=14.63 Aligned_cols=15 Identities=13% Similarity=0.208 Sum_probs=11.2
Q ss_pred chHHHHHHHHHHhHH
Q psy13041 25 KGLPVAWDYVKKNWD 39 (81)
Q Consensus 25 ~~~~~~~~f~~~n~~ 39 (81)
.+.+.+.+|+.+|-+
T Consensus 36 ~~~e~A~~wL~~h~~ 50 (64)
T 2crn_A 36 KTAEEALAWLHDHCN 50 (64)
T ss_dssp CCHHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHhCCC
Confidence 467888899887753
No 108
>3dwl_G Actin-related protein 2/3 complex subunit 5; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=20.01 E-value=1.1e+02 Score=17.00 Aligned_cols=30 Identities=10% Similarity=0.204 Sum_probs=20.7
Q ss_pred cccchHHHHHHHhhcCCchHHHHHHHHHHhHH
Q psy13041 8 IRSQDYFTVIVMVAGNPKGLPVAWDYVKKNWD 39 (81)
Q Consensus 8 v~~qd~~~~~~~~~~n~~~~~~~~~f~~~n~~ 39 (81)
+|..|+..++.++ ++...+...+|+..-++
T Consensus 87 iK~sdI~~~v~~L--~~~~~D~LMKYiYkGm~ 116 (152)
T 3dwl_G 87 IRAADIPAFVKEC--STEEIDNIVNFIYRGLA 116 (152)
T ss_dssp SCGGGHHHHHHHS--CHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHh--CHHHHHHHHHHHHHhcc
Confidence 6777777777777 45677777777765443
Done!