RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13041
(81 letters)
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A
{Homo sapiens}
Length = 419
Score = 93.7 bits (233), Expect = 1e-24
Identities = 20/74 (27%), Positives = 43/74 (58%)
Query: 1 MAKDEKNIRSQDYFTVIVMVAGNPKGLPVAWDYVKKNWDYLLKRFGLNHRVFGRIIPSVC 60
+ I++Q++ ++ ++ NP G P+AW +++KNW+ L+++F L ++
Sbjct: 292 ESFKGDKIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTT 351
Query: 61 GKFTTQERLDEVSE 74
+F+T+ RL+EV
Sbjct: 352 NQFSTRTRLEEVKG 365
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic
domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG
MES MAN; 3.08A {Homo sapiens}
Length = 967
Score = 92.6 bits (230), Expect = 6e-24
Identities = 24/74 (32%), Positives = 43/74 (58%)
Query: 1 MAKDEKNIRSQDYFTVIVMVAGNPKGLPVAWDYVKKNWDYLLKRFGLNHRVFGRIIPSVC 60
+ + K I++Q+ ++ +A PKG +AWD+V++NW +LLK+F L II
Sbjct: 843 LGMEGKVIKTQNLAALLHAIARRPKGQQLAWDFVRENWTHLLKKFDLGSYDIRMIISGTT 902
Query: 61 GKFTTQERLDEVSE 74
F+++++L EV
Sbjct: 903 AHFSSKDKLQEVKL 916
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein,
metal-binding, metalloprotease, protease, hydrolase,
adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB:
2yd0_A* 3qnf_A* 3mdj_A*
Length = 897
Score = 90.6 bits (225), Expect = 2e-23
Identities = 20/74 (27%), Positives = 43/74 (58%)
Query: 1 MAKDEKNIRSQDYFTVIVMVAGNPKGLPVAWDYVKKNWDYLLKRFGLNHRVFGRIIPSVC 60
+ I++Q++ ++ ++ NP G P+AW +++KNW+ L+++F L ++
Sbjct: 775 ESFKGDKIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTT 834
Query: 61 GKFTTQERLDEVSE 74
+F+T+ RL+EV
Sbjct: 835 NQFSTRTRLEEVKG 848
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase,
gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma
acidophilum} PDB: 1z1w_A 3q7j_A*
Length = 780
Score = 73.5 bits (181), Expect = 2e-17
Identities = 7/62 (11%), Positives = 18/62 (29%), Gaps = 1/62 (1%)
Query: 7 NIRSQDYFTVIVMVAGNPKGLPVAWDYVKKNWDYLLKRFGLNHRVFGRIIPSVCGKFTTQ 66
I+ QD + G + + + +++ F +R R + +
Sbjct: 679 EIKKQDMISFFSSALETLPGREFIFANLDRIIRLVIRYFT-GNRTASRTVEMMIPVIGLD 737
Query: 67 ER 68
Sbjct: 738 HP 739
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer,
hexokinas actin superfamily, L-rhamnulose kinase,
rhamnose metabolism kinase; HET: LRH ADP; 1.55A
{Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*
Length = 489
Score = 28.0 bits (63), Expect = 0.25
Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 31 WDYVKKNWDY-LLKRFGLNHRVFGRIIPS--VCGKFTT 65
+ +WD LL G N FGR V G +
Sbjct: 185 VNINSDDWDESLLAWSGANKAWFGRPTHPGNVIGHWIC 222
>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain
12444, SGX, transferase; 2.50A {Novosphingobium
aromaticivorans}
Length = 482
Score = 27.9 bits (62), Expect = 0.27
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 3/36 (8%)
Query: 31 WDYVKKNWDYLLKRFGLNHRVFGRIIPS--VCGKFT 64
WD ++ + KR G F I+ + G
Sbjct: 178 WDPQDGDFSPMAKRLGW-AARFAPIVRAGDTVGALL 212
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.1 bits (59), Expect = 0.60
Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 23/65 (35%)
Query: 19 MVAGNPKGLPVAWDYVKKN---WDYLLKRFGLNHRVFGRIIPSVCGKFTTQERLDEVSEK 75
++ NP+ L + + ++ WD K ++L + E
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNW--------------------KHVNCDKLTTIIES 361
Query: 76 SLKNL 80
SL L
Sbjct: 362 SLNVL 366
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.9 bits (59), Expect = 0.64
Identities = 15/98 (15%), Positives = 36/98 (36%), Gaps = 32/98 (32%)
Query: 1 MAKDE-------KNI-------RSQDY-FTVIVMVAGNPKGLPVAWD-----YVKKNWDY 40
M D +++ Y F+++ +V NP L + + +++N+
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSA 1690
Query: 41 LLKRFGLNHRVFGRIIPSVCGKFTTQERLDEVSEKSLK 78
++ ++ GK T++ E++E S
Sbjct: 1691 MIFETIVD------------GKLKTEKIFKEINEHSTS 1716
>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus
stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n*
1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M
Length = 122
Score = 26.2 bits (57), Expect = 0.95
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 1 MAKDEKNIRSQDYFTVIVMVAGNPKGL----PVAWDYVKKNW 38
D IR + VI+ +P+G PVA + K++
Sbjct: 70 RRPDGSYIRFDENACVIIRDDKSPRGTRIFGPVARELRDKDF 111
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO
biosynthesis, gephyrin function; 1.45A {Escherichia
coli} SCOP: c.57.1.1 PDB: 1di7_A
Length = 195
Score = 25.4 bits (56), Expect = 1.8
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 9/45 (20%)
Query: 15 TVIVMVAGNPKGLPVAWDYVKKNWDYLLKRFGLNHRVFGRIIPSV 59
+I+ + G PK +K+ + + + V I SV
Sbjct: 127 ALILNLPGQPKS-------IKETLEGVKD--AEGNVVVHGIFASV 162
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial;
mitochondrion, DNA binding protein, transcription
factor, transcription termination; 1.60A {Homo sapiens}
PDB: 3opg_A 3my3_A
Length = 270
Score = 25.5 bits (56), Expect = 2.1
Identities = 6/35 (17%), Positives = 14/35 (40%)
Query: 16 VIVMVAGNPKGLPVAWDYVKKNWDYLLKRFGLNHR 50
+ M+ PK L + + +D++ + H
Sbjct: 165 IQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHH 199
>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH,
oxygenase, transcription, inhibitor oxoglutarate,
asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens}
PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A*
2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A*
3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A*
...
Length = 349
Score = 24.3 bits (52), Expect = 5.6
Identities = 5/50 (10%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 25 KGLPVAWDYVKKNWDYLLKRFGLNHRVFGRIIPSVCGKFTTQERLDEVSE 74
+ + +K + +YL + G N + + ++++
Sbjct: 65 TDTNLVYPALKWDLEYLQENIG-NGDFSVYSASTHKFLYYDEKKMANFQN 113
>1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA complex;
HET: PTR; 2.80A {Enterobacteria phage lambda} PDB:
1p7d_A*
Length = 283
Score = 23.9 bits (52), Expect = 7.3
Identities = 5/31 (16%), Positives = 12/31 (38%)
Query: 23 NPKGLPVAWDYVKKNWDYLLKRFGLNHRVFG 53
+ + P++ V + + K GL+
Sbjct: 201 STRREPLSSGTVSRYFMRARKASGLSFEGDP 231
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.424
Gapped
Lambda K H
0.267 0.0637 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,301,957
Number of extensions: 67691
Number of successful extensions: 190
Number of sequences better than 10.0: 1
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 16
Length of query: 81
Length of database: 6,701,793
Length adjustment: 50
Effective length of query: 31
Effective length of database: 5,305,743
Effective search space: 164478033
Effective search space used: 164478033
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.6 bits)