RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13041
         (81 letters)



>d1di6a_ c.57.1.1 (A:) MogA {Escherichia coli [TaxId: 562]}
          Length = 190

 Score = 25.7 bits (56), Expect = 0.56
 Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 5/41 (12%)

Query: 15  TVIVMVAGNPKGLPVAWDYVKKNWDYLLKRFGLNHRVFGRI 55
            +I+ + G PK +    + VK     ++      H +F  +
Sbjct: 126 ALILNLPGQPKSIKETLEGVKDAEGNVVV-----HGIFASV 161


>d1uuya_ c.57.1.1 (A:) Plant CNX1 G domain {Mouse-ear cress
           (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 161

 Score = 24.3 bits (52), Expect = 1.9
 Identities = 7/29 (24%), Positives = 14/29 (48%)

Query: 15  TVIVMVAGNPKGLPVAWDYVKKNWDYLLK 43
           T+I+ + GNP  +    + +     + LK
Sbjct: 130 TLIINMPGNPNAVAECMEALLPALKHALK 158


>d2f7wa1 c.57.1.1 (A:2-174) MogA {Shewanella oneidensis [TaxId:
           70863]}
          Length = 173

 Score = 24.4 bits (52), Expect = 1.9
 Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 2/45 (4%)

Query: 15  TVIVMVAGNPKGLPVAWDYVKKNWDYLLKRFGLNHRV--FGRIIP 57
           ++IV + G PK +    D V     Y +      +       I P
Sbjct: 126 SLIVNLPGKPKSIRECLDAVFPAIPYCIDLMEGPYLECNEAVIKP 170


>d2g2ca1 c.57.1.1 (A:1-163) Putative molybdenum cofactor
           biosynthesis protein DIP0503 {Corynebacterium
           diphtheriae [TaxId: 1717]}
          Length = 163

 Score = 24.0 bits (51), Expect = 2.7
 Identities = 4/29 (13%), Positives = 10/29 (34%)

Query: 15  TVIVMVAGNPKGLPVAWDYVKKNWDYLLK 43
            +IV    +  G+   W  +      + +
Sbjct: 131 ALIVNAPSSSGGITDTWAVISPVIPNIFE 159


>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor
          (FIH1) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 335

 Score = 23.0 bits (48), Expect = 5.8
 Identities = 4/22 (18%), Positives = 10/22 (45%)

Query: 25 KGLPVAWDYVKKNWDYLLKRFG 46
              + +  +K + +YL +  G
Sbjct: 51 TDTNLVYPALKWDLEYLQENIG 72


>d1u8xx2 d.162.1.2 (X:170-445) Maltose-6'-phosphate glucosidase
          GlvA {Bacillus subtilis [TaxId: 1423]}
          Length = 276

 Score = 22.6 bits (48), Expect = 7.2
 Identities = 8/32 (25%), Positives = 13/32 (40%)

Query: 45 FGLNHRVFGRIIPSVCGKFTTQERLDEVSEKS 76
          +GLNH  +   I    G     +  + VS+  
Sbjct: 29 YGLNHFGWWTSIQDQEGNDLMPKLKEHVSQYG 60


>d1qmha2 d.68.2.1 (A:5-184,A:280-338) RNA 3'-terminal phosphate
           cyclase, RPTC {Escherichia coli [TaxId: 562]}
          Length = 239

 Score = 22.5 bits (48), Expect = 8.3
 Identities = 4/18 (22%), Positives = 12/18 (66%)

Query: 31  WDYVKKNWDYLLKRFGLN 48
            D++++  + LL + G++
Sbjct: 129 ADFIRRVLEPLLAKIGIH 146


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.139    0.424 

Gapped
Lambda     K      H
   0.267   0.0684    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 328,303
Number of extensions: 14185
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 11
Length of query: 81
Length of database: 2,407,596
Length adjustment: 47
Effective length of query: 34
Effective length of database: 1,762,286
Effective search space: 59917724
Effective search space used: 59917724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.0 bits)