BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13042
(127 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FYQ|A Chain A, Human Aminopeptidase N (Cd13)
pdb|4FYR|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Bestatin
pdb|4FYS|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Angiotensin
Iv
pdb|4FYT|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Amastatin
Length = 903
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%)
Query: 26 GEEEWKKMWAKFREESNPQEQIKMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQDYFTVIV 85
GEEEW W +FR + E K+ L+ KE +L ++L + IR QD + I+
Sbjct: 741 GEEEWDFAWEQFRNATLVNEADKLRAALACSKELWILNRYLSYTLNPDLIRKQDATSTII 800
Query: 86 MVAGNPKGLPVAWDYVKKNW 105
+ N G + WD+V+ NW
Sbjct: 801 SITNNVIGQGLVWDFVQSNW 820
>pdb|4E36|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
pdb|4E36|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
Length = 967
Score = 53.5 bits (127), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 30 WKKMWAKFREESNPQEQIKMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQDYFTVIVMVAG 89
W + ++ + EQ K+L LS+ K + L K +E+ + K I++Q+ ++ +A
Sbjct: 805 WNYLLEQYELSMSSAEQNKILYALSTSKHQEKLLKLIELGMEGKVIKTQNLAALLHAIAR 864
Query: 90 NPKGLPVAWDYVKKNWDYL 108
PKG +AWD+V++NW +L
Sbjct: 865 RPKGQQLAWDFVRENWTHL 883
>pdb|3SE6|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
pdb|3SE6|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
Length = 967
Score = 53.5 bits (127), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 30 WKKMWAKFREESNPQEQIKMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQDYFTVIVMVAG 89
W + ++ + EQ K+L LS+ K + L K +E+ + K I++Q+ ++ +A
Sbjct: 805 WNYLLEQYELSMSSAEQNKILYALSTSKHQEKLLKLIELGMEGKVIKTQNLAALLHAIAR 864
Query: 90 NPKGLPVAWDYVKKNWDYL 108
PKG +AWD+V++NW +L
Sbjct: 865 RPKGQQLAWDFVRENWTHL 883
>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Poly- Alanine
Length = 908
Score = 53.1 bits (126), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 42/83 (50%)
Query: 26 GEEEWKKMWAKFREESNPQEQIKMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQDYFTVIV 85
G+++W W + ++ E K+ L+ E LL ++L + IR QD + I
Sbjct: 740 GQDQWDFAWGQLQQAQLVNEADKLRSALACSNEVWLLNRYLGYTLNPDLIRKQDATSTIN 799
Query: 86 MVAGNPKGLPVAWDYVKKNWDYL 108
+A N G P+AWD+V+ NW L
Sbjct: 800 SIASNVIGQPLAWDFVQSNWKKL 822
>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Alanine
pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Bestatin
Length = 909
Score = 53.1 bits (126), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 42/83 (50%)
Query: 26 GEEEWKKMWAKFREESNPQEQIKMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQDYFTVIV 85
G+++W W + ++ E K+ L+ E LL ++L + IR QD + I
Sbjct: 741 GQDQWDFAWGQLQQAQLVNEADKLRSALACSNEVWLLNRYLGYTLNPDLIRKQDATSTIN 800
Query: 86 MVAGNPKGLPVAWDYVKKNWDYL 108
+A N G P+AWD+V+ NW L
Sbjct: 801 SIASNVIGQPLAWDFVQSNWKKL 823
>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
pdb|4F5C|B Chain B, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
Length = 959
Score = 53.1 bits (126), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 42/83 (50%)
Query: 26 GEEEWKKMWAKFREESNPQEQIKMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQDYFTVIV 85
G+++W W + ++ E K+ L+ E LL ++L + IR QD + I
Sbjct: 784 GQDQWDFAWGQLQQAQLVNEADKLRSALACSNEVWLLNRYLGYTLNPDLIRKQDATSTIN 843
Query: 86 MVAGNPKGLPVAWDYVKKNWDYL 108
+A N G P+AWD+V+ NW L
Sbjct: 844 SIASNVIGQPLAWDFVQSNWKKL 866
>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Cleaved Poly-Alanine
pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Substance P
Length = 908
Score = 53.1 bits (126), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 42/83 (50%)
Query: 26 GEEEWKKMWAKFREESNPQEQIKMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQDYFTVIV 85
G+++W W + ++ E K+ L+ E LL ++L + IR QD + I
Sbjct: 740 GQDQWDFAWGQLQQAQLVNEADKLRSALACSNEVWLLNRYLGYTLNPDLIRKQDATSTIN 799
Query: 86 MVAGNPKGLPVAWDYVKKNWDYL 108
+A N G P+AWD+V+ NW L
Sbjct: 800 SIASNVIGQPLAWDFVQSNWKKL 822
>pdb|3RJO|A Chain A, Crystal Structure Of Erap1 Peptide Binding Domain
Length = 419
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 46/81 (56%)
Query: 28 EEWKKMWAKFREESNPQEQIKMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQDYFTVIVMV 87
E W +++K++ + E+ ++ L + + L+ L+ + I++Q++ ++ ++
Sbjct: 252 EGWDFLYSKYQFSLSSTEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQILTLI 311
Query: 88 AGNPKGLPVAWDYVKKNWDYL 108
NP G P+AW +++KNW+ L
Sbjct: 312 GRNPVGYPLAWQFLRKNWNKL 332
>pdb|3QNF|A Chain A, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|B Chain B, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|C Chain C, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
Length = 954
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 46/81 (56%)
Query: 28 EEWKKMWAKFREESNPQEQIKMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQDYFTVIVMV 87
E W +++K++ + E+ ++ L + + L+ L+ + I++Q++ ++ ++
Sbjct: 786 EGWDFLYSKYQFSLSSTEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQILTLI 845
Query: 88 AGNPKGLPVAWDYVKKNWDYL 108
NP G P+AW +++KNW+ L
Sbjct: 846 GRNPVGYPLAWQFLRKNWNKL 866
>pdb|3MDJ|A Chain A, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|B Chain B, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|C Chain C, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
Length = 921
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 46/81 (56%)
Query: 28 EEWKKMWAKFREESNPQEQIKMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQDYFTVIVMV 87
E W +++K++ + E+ ++ L + + L+ L+ + I++Q++ ++ ++
Sbjct: 744 EGWDFLYSKYQFSLSSTEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQILTLI 803
Query: 88 AGNPKGLPVAWDYVKKNWDYL 108
NP G P+AW +++KNW+ L
Sbjct: 804 GRNPVGYPLAWQFLRKNWNKL 824
>pdb|2YD0|A Chain A, Crystal Structure Of The Soluble Domain Of Human
Endoplasmic Reticulum Aminopeptidase 1 Erap1
Length = 897
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 46/81 (56%)
Query: 28 EEWKKMWAKFREESNPQEQIKMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQDYFTVIVMV 87
E W +++K++ + E+ ++ L + + L+ L+ + I++Q++ ++ ++
Sbjct: 735 EGWDFLYSKYQFSLSSTEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQILTLI 794
Query: 88 AGNPKGLPVAWDYVKKNWDYL 108
NP G P+AW +++KNW+ L
Sbjct: 795 GRNPVGYPLAWQFLRKNWNKL 815
>pdb|2FRV|L Chain L, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|B Chain B, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|D Chain D, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|F Chain F, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|H Chain H, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|J Chain J, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
Length = 536
Score = 29.6 bits (65), Expect = 0.44, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 13/76 (17%)
Query: 42 NPQEQIKMLGGLSSVK--EPKLLEKFLEMAKDEKNIRSQDYFTVIVMVAGNPKGLPVAWD 99
NP Q ++GG ++ P+ + +F ++ K+ + Q Y T ++ VAG
Sbjct: 217 NPHTQFTVVGGCTNYDSLRPERIAEFRKLYKEVREFIEQVYITDLLAVAG---------- 266
Query: 100 YVKKNWDYLGRLVTYL 115
KNW +G+ +L
Sbjct: 267 -FYKNWAGIGKTSNFL 281
>pdb|1FRV|B Chain B, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|1FRV|D Chain D, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
Length = 536
Score = 29.6 bits (65), Expect = 0.44, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 13/76 (17%)
Query: 42 NPQEQIKMLGGLSSVK--EPKLLEKFLEMAKDEKNIRSQDYFTVIVMVAGNPKGLPVAWD 99
NP Q ++GG ++ P+ + +F ++ K+ + Q Y T ++ VAG
Sbjct: 217 NPHTQFTVVGGCTNYDSLRPERIAEFRKLYKEVREFIEQVYITDLLAVAG---------- 266
Query: 100 YVKKNWDYLGRLVTYL 115
KNW +G+ +L
Sbjct: 267 -FYKNWAGIGKTSNFL 281
>pdb|1YQ9|H Chain H, Structure Of The Unready Oxidized Form Of [nife]
Hydrogenase
pdb|1YQ9|I Chain I, Structure Of The Unready Oxidized Form Of [nife]
Hydrogenase
Length = 536
Score = 29.6 bits (65), Expect = 0.45, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 13/76 (17%)
Query: 42 NPQEQIKMLGGLSSVK--EPKLLEKFLEMAKDEKNIRSQDYFTVIVMVAGNPKGLPVAWD 99
NP Q ++GG ++ P+ + +F ++ K+ + Q Y T ++ VAG
Sbjct: 217 NPHTQFTVVGGCTNYDSLRPERIAEFRKLYKEVREFIEQVYITDLLAVAG---------- 266
Query: 100 YVKKNWDYLGRLVTYL 115
KNW +G+ +L
Sbjct: 267 -FYKNWAGIGKTSNFL 281
>pdb|3H0L|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
Length = 478
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 10/75 (13%)
Query: 53 LSSVKEPKLLEKFLEMAKDEKNIRSQDYFTVIVMVAGNPK---------GLPVAWDYVKK 103
++S P L KF E ++ + D TV +AG P GLPV + K
Sbjct: 392 IASPTTPTLPFKFGERLENPIEMYLSDILTVPANLAGLPAISIPIAWKDGLPVGGQLIGK 451
Query: 104 NWDYLGRL-VTYLYQ 117
+WD L ++YL++
Sbjct: 452 HWDETTLLQISYLWE 466
>pdb|1H79|A Chain A, Structural Basis For Allosteric Substrate Specificity
Regulation In Class Iii Ribonucleotide Reductases: Nrdd
In Complex With Dttp
pdb|1H7A|A Chain A, Structural Basis For Allosteric Substrate Specificity
Regulation In Class Iii Ribonucleotide Reductases: Nrdd
In Complex With Datp
pdb|1H7B|A Chain A, Structural Basis For Allosteric Substrate Specificity
Regulation In Class Iii Ribonucleotide Reductases,
Native Nrdd
pdb|1H78|A Chain A, Structural Basis For Allosteric Substrate Specificity
Regulation In Class Iii Ribonucleotide Reductases: Nrdd
In Complex With Dctp.
pdb|1HK8|A Chain A, Structural Basis For Allosteric Substrate Specificity
Regulation In Class Iii Ribonucleotide Reductases: Nrdd
In Complex With Dgtp
Length = 605
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 90 NPKGLPVAWDYVKKNWDYLG 109
N KGL WDY ++ DY G
Sbjct: 516 NLKGLEAVWDYAAQHLDYFG 535
>pdb|2CCM|A Chain A, X-Ray Structure Of Calexcitin From Loligo Pealeii At 1.8a
pdb|2CCM|B Chain B, X-Ray Structure Of Calexcitin From Loligo Pealeii At 1.8a
Length = 191
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 16/86 (18%)
Query: 13 LKVYRRKTRMENVGEEEWKKMWAKFREESNPQEQIKMLGGLSSVKEPKLLEKFLEMAKD- 71
L+ Y + E V +EEW KMWA+ + E + P+ L K++ D
Sbjct: 69 LRKYADENEDEQVTKEEWLKMWAECVKSVEKGESL-----------PEWLTKYMNFMFDV 117
Query: 72 ----EKNIRSQDYFTVIVMVAGNPKG 93
NI + ++ + M G PK
Sbjct: 118 NDTSGDNIIDKHEYSTVYMSYGIPKS 143
>pdb|4DNQ|A Chain A, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|B Chain B, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|C Chain C, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|D Chain D, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|E Chain E, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|F Chain F, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|G Chain G, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|H Chain H, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|I Chain I, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|J Chain J, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|K Chain K, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|L Chain L, Crystal Structure Of Dad2 S96a Mutant
Length = 269
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 48 KMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQDY 80
M+G L+S++ P+L K + + + + +DY
Sbjct: 101 AMIGILASIRRPELFSKLILIGASPRFLNDEDY 133
>pdb|4DNP|A Chain A, Crystal Structure Of Dad2
Length = 269
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 48 KMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQDY 80
M+G L+S++ P+L K + + + + +DY
Sbjct: 101 AMIGILASIRRPELFSKLILIGASPRFLNDEDY 133
>pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1R|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
Length = 431
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 76 RSQDYFTVIVMVAGNPKGLPVAWDYVKK--NWDYLGRL 111
R+ DY +++ G P+ LPVA V K N+ YL L
Sbjct: 99 RALDYDRLVLATGGRPRPLPVASGAVGKANNFRYLRTL 136
>pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
pdb|3LB8|B Chain B, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
Length = 436
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 76 RSQDYFTVIVMVAGNPKGLPVAWDYVKK--NWDYLGRL 111
R+ DY +++ G P+ LPVA V K N+ YL L
Sbjct: 98 RALDYDRLVLATGGRPRPLPVASGAVGKANNFRYLRTL 135
>pdb|4FGV|A Chain A, Crystal Structure Of Free Crm1 (crystal Form 1)
pdb|4HZK|A Chain A, Crystal Structure Of Free Crm1 (crystal Form 2)
pdb|4HZK|B Chain B, Crystal Structure Of Free Crm1 (crystal Form 2)
Length = 1086
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Query: 52 GLSSVKEP--KLLEKFLEMAKDEKNIRSQ 78
GL ++K+ KL+E F+E A+D + +RSQ
Sbjct: 753 GLRTIKKEILKLVETFVEKAEDLQAVRSQ 781
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,843,108
Number of Sequences: 62578
Number of extensions: 143760
Number of successful extensions: 459
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 440
Number of HSP's gapped (non-prelim): 45
length of query: 127
length of database: 14,973,337
effective HSP length: 87
effective length of query: 40
effective length of database: 9,529,051
effective search space: 381162040
effective search space used: 381162040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)