Query psy13042
Match_columns 127
No_of_seqs 118 out of 1025
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 17:59:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13042.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13042hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11838 ERAP1_C: ERAP1-like C 99.9 3.9E-21 8.5E-26 147.0 10.1 102 6-108 165-267 (324)
2 KOG1046|consensus 99.7 5.2E-16 1.1E-20 133.4 11.3 103 5-108 704-806 (882)
3 TIGR02412 pepN_strep_liv amino 99.4 1.3E-12 2.8E-17 112.1 8.0 102 4-108 663-764 (831)
4 COG0308 PepN Aminopeptidase N 95.3 0.095 2.1E-06 46.0 7.8 87 22-108 704-790 (859)
5 PF12069 DUF3549: Protein of u 86.4 2.7 5.7E-05 33.3 6.1 68 18-85 203-272 (340)
6 PF13646 HEAT_2: HEAT repeats; 86.1 0.98 2.1E-05 27.4 3.0 39 31-69 2-40 (88)
7 smart00638 LPD_N Lipoprotein N 81.0 13 0.00028 30.9 8.4 66 20-87 318-383 (574)
8 PF13646 HEAT_2: HEAT repeats; 77.2 5.7 0.00012 23.9 4.0 49 23-72 26-74 (88)
9 PF05396 Phage_T7_Capsid: Phag 72.3 18 0.0004 24.5 5.7 44 25-70 44-87 (123)
10 PF01347 Vitellogenin_N: Lipop 71.6 22 0.00047 29.8 7.3 68 20-88 354-422 (618)
11 PF13812 PPR_3: Pentatricopept 64.1 13 0.00027 18.0 2.9 26 48-73 6-31 (34)
12 KOG2297|consensus 62.4 79 0.0017 25.3 8.5 103 18-124 95-215 (412)
13 PRK13266 Thf1-like protein; Re 52.0 91 0.002 23.4 6.7 69 8-86 44-116 (225)
14 PLN03060 inositol phosphatase- 51.4 80 0.0017 23.3 6.3 50 8-66 42-93 (206)
15 smart00544 MA3 Domain in DAP-5 48.6 69 0.0015 20.4 8.8 66 29-94 4-71 (113)
16 PF10045 DUF2280: Uncharacteri 47.9 32 0.0007 22.6 3.4 37 42-79 5-41 (104)
17 smart00638 LPD_N Lipoprotein N 47.5 55 0.0012 27.3 5.6 65 39-103 456-525 (574)
18 PF14771 DUF4476: Domain of un 40.4 92 0.002 19.4 5.3 43 26-68 6-51 (95)
19 COG5556 Uncharacterized conser 37.5 42 0.0009 21.9 2.6 26 42-67 5-30 (110)
20 KOG0030|consensus 36.3 1.5E+02 0.0033 20.8 5.4 68 27-94 10-85 (152)
21 PF10193 Telomere_reg-2: Telom 34.3 32 0.0007 22.7 1.9 54 33-88 57-111 (114)
22 PF01347 Vitellogenin_N: Lipop 32.8 32 0.0007 28.8 2.1 71 36-106 497-572 (618)
23 TIGR03060 PS_II_psb29 photosys 32.4 60 0.0013 24.1 3.2 69 8-86 44-116 (214)
24 KOG1567|consensus 32.3 94 0.002 24.4 4.3 62 10-73 111-173 (344)
25 PRK01381 Trp operon repressor; 32.2 72 0.0016 20.8 3.2 47 26-73 5-55 (99)
26 PHA00435 capsid assembly prote 31.8 1.6E+02 0.0034 22.9 5.4 43 25-69 197-239 (306)
27 PF11264 ThylakoidFormat: Thyl 30.6 2.3E+02 0.0049 21.1 6.2 46 10-64 41-88 (216)
28 COG2973 TrpR Trp operon repres 29.7 1.6E+02 0.0034 19.3 4.3 60 19-80 3-66 (103)
29 PF14228 MOR2-PAG1_mid: Cell m 28.8 4.5E+02 0.0097 24.6 8.5 74 29-103 620-707 (1120)
30 PF15063 TC1: Thyroid cancer p 28.1 1.5E+02 0.0034 18.4 4.3 35 30-66 39-75 (79)
31 KOG3045|consensus 27.4 80 0.0017 24.6 3.2 34 3-38 219-252 (325)
32 PF01371 Trp_repressor: Trp re 26.2 46 0.00099 21.1 1.4 31 28-59 1-31 (87)
33 smart00567 EZ_HEAT E-Z type HE 25.6 90 0.0019 14.8 2.8 25 45-69 3-27 (30)
34 PF01465 GRIP: GRIP domain; I 25.4 54 0.0012 18.0 1.5 19 36-54 14-32 (46)
35 PF13762 MNE1: Mitochondrial s 25.4 2.4E+02 0.0051 19.6 5.2 14 75-88 113-126 (145)
36 PF06782 UPF0236: Uncharacteri 25.2 1.8E+02 0.0039 24.0 5.1 57 47-108 291-353 (470)
37 TIGR00756 PPR pentatricopeptid 24.4 90 0.002 14.4 3.2 24 49-72 6-29 (35)
38 PLN00047 photosystem II biogen 24.4 76 0.0016 24.6 2.6 48 8-64 95-144 (283)
39 PF05106 Phage_holin_3: Phage 24.2 1.3E+02 0.0029 19.3 3.4 20 89-108 3-22 (100)
40 KOG4337|consensus 24.0 2.1E+02 0.0046 25.3 5.3 84 18-108 526-618 (896)
41 PF06685 DUF1186: Protein of u 23.6 3.2E+02 0.0069 20.7 5.8 89 14-107 59-161 (249)
42 PF06628 Catalase-rel: Catalas 23.4 1E+02 0.0022 18.2 2.6 42 28-70 8-53 (68)
43 PF05131 Pep3_Vps18: Pep3/Vps1 23.3 1E+02 0.0022 21.3 2.8 55 2-66 76-137 (147)
44 PF04065 Not3: Not1 N-terminal 23.0 1E+02 0.0022 23.1 3.0 28 26-53 20-47 (233)
45 PF04388 Hamartin: Hamartin pr 22.4 3E+02 0.0065 24.0 6.0 31 43-73 22-52 (668)
46 KOG3192|consensus 22.2 2.4E+02 0.0053 20.1 4.5 42 27-68 55-104 (168)
47 PF09127 Leuk-A4-hydro_C: Leuk 22.0 2.7E+02 0.0058 18.9 6.7 79 26-105 32-128 (143)
48 PRK09687 putative lyase; Provi 20.8 3.8E+02 0.0083 20.3 8.0 31 41-71 140-170 (280)
49 PF09958 DUF2192: Uncharacteri 20.6 3.8E+02 0.0082 20.2 7.3 65 35-100 96-165 (231)
50 PF11838 ERAP1_C: ERAP1-like C 20.4 3.7E+02 0.0081 20.0 7.3 63 40-104 166-230 (324)
51 PF07560 DUF1539: Domain of Un 20.3 2.1E+02 0.0046 19.4 3.9 36 62-98 69-104 (126)
No 1
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=99.85 E-value=3.9e-21 Score=147.00 Aligned_cols=102 Identities=28% Similarity=0.614 Sum_probs=90.6
Q ss_pred CCCCCcccceeeeehhhhcCCHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCcHHHHHHHHHHhhcCCCCCcccHHHHHH
Q psy13042 6 LGFEAQVLKVYRRKTRMENVGEEEWKKMWAKFREESNPQEQIKMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQDYFTVIV 85 (127)
Q Consensus 6 ~~~~~~~~~v~~yC~~ir~g~~~~~~~l~~~y~~t~~~~er~~ll~AL~ct~d~~ll~~~L~~~l~~~~v~~qd~~~v~~ 85 (127)
..+|++.+.+. ||+++++|+.++|+.++++|++++++++|..++.||||++||++++++|+++++++.++.||+..++.
T Consensus 165 ~~i~~dlr~~v-~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d~~~~~~ 243 (324)
T PF11838_consen 165 SSIPPDLRWAV-YCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQDIRYVLA 243 (324)
T ss_dssp STS-HHHHHHH-HHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTTHHHHHH
T ss_pred cccchHHHHHH-HHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccHHHHHHHH
Confidence 46788887554 88999999999999999999999999999999999999999999999999999986699999999999
Q ss_pred HHh-cCCccHHHHHHHHHHhHHHH
Q psy13042 86 MVA-GNPKGLPVAWDYVKKNWDYL 108 (127)
Q Consensus 86 ~v~-~~~~g~~~~w~fl~~N~~~i 108 (127)
+++ .+|.|++++|+|+.+||+.|
T Consensus 244 ~~~~~~~~~~~~~~~~~~~n~~~i 267 (324)
T PF11838_consen 244 GLASSNPVGRDLAWEFFKENWDAI 267 (324)
T ss_dssp HHH-CSTTCHHHHHHHHHHCHHHH
T ss_pred HHhcCChhhHHHHHHHHHHHHHHH
Confidence 998 99999999999999999999
No 2
>KOG1046|consensus
Probab=99.67 E-value=5.2e-16 Score=133.37 Aligned_cols=103 Identities=31% Similarity=0.630 Sum_probs=97.2
Q ss_pred CCCCCCcccceeeeehhhhcCCHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCcHHHHHHHHHHhhcCCCCCcccHHHHH
Q psy13042 5 GLGFEAQVLKVYRRKTRMENVGEEEWKKMWAKFREESNPQEQIKMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQDYFTVI 84 (127)
Q Consensus 5 ~~~~~~~~~~v~~yC~~ir~g~~~~~~~l~~~y~~t~~~~er~~ll~AL~ct~d~~ll~~~L~~~l~~~~v~~qd~~~v~ 84 (127)
..++|++.+.+. ||+++++|+++.|+++++.|+++.+..||..++.||+|+++++.++++|++.++.+.++.||...++
T Consensus 704 ~~~ip~~lr~~v-y~~~~~~g~~~~w~~~~~~y~~~~~~~e~~~~l~al~~~~~~~~l~~~l~~~~~~~~v~~qd~~~~~ 782 (882)
T KOG1046|consen 704 TNPIPPDLREVV-YCTAVQFGTEEDWEQLLELYKKETTAAEKRKLLNALSCSKDPWLLQRLLDLAFDAENVRDQDVLTLL 782 (882)
T ss_pred CCCCChhhhhhh-hhHHHHhcCHhHHHHHHHHHhccccHHHHHHHHHHhccCccHHHHHHHHHHhcccccccchhHHHHH
Confidence 357888888775 9999999999999999999999999999999999999999999999999999885569999999999
Q ss_pred HHHhcCCccHHHHHHHHHHhHHHH
Q psy13042 85 VMVAGNPKGLPVAWDYVKKNWDYL 108 (127)
Q Consensus 85 ~~v~~~~~g~~~~w~fl~~N~~~i 108 (127)
.+++.||.|..++|+|+.+||+.+
T Consensus 783 ~~~~~~~~g~~~a~~~~~~n~~~l 806 (882)
T KOG1046|consen 783 QGISGNPRGVELAWKFLQDNWKEL 806 (882)
T ss_pred HHHhcCcccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999
No 3
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=99.38 E-value=1.3e-12 Score=112.07 Aligned_cols=102 Identities=8% Similarity=0.084 Sum_probs=87.5
Q ss_pred cCCCCCCcccceeeeehhhhcCCHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCcHHHHHHHHHHhhcCCCCCcccHHHH
Q psy13042 4 RGLGFEAQVLKVYRRKTRMENVGEEEWKKMWAKFREESNPQEQIKMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQDYFTV 83 (127)
Q Consensus 4 ~~~~~~~~~~~v~~yC~~ir~g~~~~~~~l~~~y~~t~~~~er~~ll~AL~ct~d~~ll~~~L~~~l~~~~v~~qd~~~v 83 (127)
.|+.+|++.+... ||.+++ +|..+|+.++++|+.++++++|..++.||||+++|+++++.+..++.++.++.||+..+
T Consensus 663 ~~~~i~~dlr~~v-~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (831)
T TIGR02412 663 KGLALDPDLRWRI-IARLAA-LGFIDADDIAAELERDNTASGEEHAAAARAARPDAAAKREAWQKLVTTDALPNSKQRAI 740 (831)
T ss_pred CCcccCHhHHHHH-HHHHHh-cCCCCHHHHHHHHhcCCCHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 3566888877554 777666 56788888999999999999999999999999999999977777766655899999999
Q ss_pred HHHHhcCCccHHHHHHHHHHhHHHH
Q psy13042 84 IVMVAGNPKGLPVAWDYVKKNWDYL 108 (127)
Q Consensus 84 ~~~v~~~~~g~~~~w~fl~~N~~~i 108 (127)
+.+++ ++.+++++|+|+++||+.|
T Consensus 741 ~~~~~-~~~~~~~~~~~~~~~~~~l 764 (831)
T TIGR02412 741 IEGFW-QPEQALLLAAYAERYFANL 764 (831)
T ss_pred HhhcC-CCCcHHHHHHHHHHHHHHH
Confidence 99987 5699999999999999988
No 4
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=95.25 E-value=0.095 Score=46.00 Aligned_cols=87 Identities=9% Similarity=0.037 Sum_probs=75.9
Q ss_pred hhcCCHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCcHHHHHHHHHHhhcCCCCCcccHHHHHHHHhcCCccHHHHHHHH
Q psy13042 22 MENVGEEEWKKMWAKFREESNPQEQIKMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQDYFTVIVMVAGNPKGLPVAWDYV 101 (127)
Q Consensus 22 ir~g~~~~~~~l~~~y~~t~~~~er~~ll~AL~ct~d~~ll~~~L~~~l~~~~v~~qd~~~v~~~v~~~~~g~~~~w~fl 101 (127)
.+.+..+++..+.+.|..++....+..+..+++....+....+.|..+..++.+.+|+..........++.++++.|.|.
T Consensus 704 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (859)
T COG0308 704 AAGNMTDALKALLEAYQSPTRAEALRDFADAFGRFPLVMDKWFALQAISPGDTVLEQDIGLMIHAAFEAPNPNEARWLYG 783 (859)
T ss_pred HhcChHHHHHHHHHhcccCChHHHHHHHHHHhcccccHHHHHHHHHhcCCCcchHHHHHHHHhhhhhhCCcchhhHHHHH
Confidence 33344447999999999999889999999999999999999999999887755788999888888889999999999999
Q ss_pred HHhHHHH
Q psy13042 102 KKNWDYL 108 (127)
Q Consensus 102 ~~N~~~i 108 (127)
..||+..
T Consensus 784 ~~~~~~~ 790 (859)
T COG0308 784 TFAFENP 790 (859)
T ss_pred HHhhhch
Confidence 9999843
No 5
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=86.43 E-value=2.7 Score=33.33 Aligned_cols=68 Identities=10% Similarity=0.146 Sum_probs=53.6
Q ss_pred eehhhhcC--CHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCcHHHHHHHHHHhhcCCCCCcccHHHHHH
Q psy13042 18 RKTRMENV--GEEEWKKMWAKFREESNPQEQIKMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQDYFTVIV 85 (127)
Q Consensus 18 yC~~ir~g--~~~~~~~l~~~y~~t~~~~er~~ll~AL~ct~d~~ll~~~L~~~l~~~~v~~qd~~~v~~ 85 (127)
.|..+-|- +++.-+.+.++...+.|......+++|||++.........++.++........|+...+.
T Consensus 203 L~~~LEh~~l~~~l~~~l~~~~~~~~d~~~~~a~lRAls~~~~~~~~~~~i~~~L~~~~~~~~e~Li~IA 272 (340)
T PF12069_consen 203 LCGCLEHQPLPDKLAEALLERLEQAPDLELLSALLRALSSAPASDLVAILIDALLQSPRLCHPEVLIAIA 272 (340)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCCchhHHHHHHHHHhcCcccCChHHHHHHH
Confidence 56666664 588899999999999999999999999999999998888788888665345555444433
No 6
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=86.15 E-value=0.98 Score=27.43 Aligned_cols=39 Identities=13% Similarity=0.377 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhhCCCCcHHHHHHHHHHh
Q psy13042 31 KKMWAKFREESNPQEQIKMLGGLSSVKEPKLLEKFLEMA 69 (127)
Q Consensus 31 ~~l~~~y~~t~~~~er~~ll~AL~ct~d~~ll~~~L~~~ 69 (127)
+.+.+.+.+..++..|...+.+||...++..+..+++.+
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l 40 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGDPEAIPALIELL 40 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Confidence 345566666677777777777777777777766666655
No 7
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=80.98 E-value=13 Score=30.94 Aligned_cols=66 Identities=15% Similarity=0.346 Sum_probs=53.0
Q ss_pred hhhhcCCHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCcHHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q psy13042 20 TRMENVGEEEWKKMWAKFREESNPQEQIKMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQDYFTVIVMV 87 (127)
Q Consensus 20 ~~ir~g~~~~~~~l~~~y~~t~~~~er~~ll~AL~ct~d~~ll~~~L~~~l~~~~v~~qd~~~v~~~v 87 (127)
..+|.-+.+....+++++.. .....|..++.||+.+-.+.-++.+.+++.+++ +...+...++..+
T Consensus 318 ~~lR~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~-~~~~ea~~~~~~~ 383 (574)
T smart00638 318 RLLRTLSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKK-ITPLEAAQLLAVL 383 (574)
T ss_pred HHHHhCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 56777888889999998876 437889999999999999998999999888877 7766656655554
No 8
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=77.20 E-value=5.7 Score=23.91 Aligned_cols=49 Identities=12% Similarity=0.279 Sum_probs=38.5
Q ss_pred hcCCHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCcHHHHHHHHHHhhcC
Q psy13042 23 ENVGEEEWKKMWAKFREESNPQEQIKMLGGLSSVKEPKLLEKFLEMAKDE 72 (127)
Q Consensus 23 r~g~~~~~~~l~~~y~~t~~~~er~~ll~AL~ct~d~~ll~~~L~~~l~~ 72 (127)
+.++.+....+.+.+ +..++.-|...+.|||...++..+..+.+.+.++
T Consensus 26 ~~~~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i~~~~~~~~L~~~l~~~ 74 (88)
T PF13646_consen 26 ELGDPEAIPALIELL-KDEDPMVRRAAARALGRIGDPEAIPALIKLLQDD 74 (88)
T ss_dssp CCTHHHHHHHHHHHH-TSSSHHHHHHHHHHHHCCHHHHTHHHHHHHHTC-
T ss_pred HcCCHhHHHHHHHHH-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC
Confidence 445566777777777 6788999999999999999998888777765543
No 9
>PF05396 Phage_T7_Capsid: Phage T7 capsid assembly protein; InterPro: IPR008768 This family contains the capsid assembly protein (scaffolding protein) of bacteriophage T7.; GO: 0019069 viral capsid assembly
Probab=72.32 E-value=18 Score=24.47 Aligned_cols=44 Identities=11% Similarity=0.189 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCcHHHHHHHHHHhh
Q psy13042 25 VGEEEWKKMWAKFREESNPQEQIKMLGGLSSVKEPKLLEKFLEMAK 70 (127)
Q Consensus 25 g~~~~~~~l~~~y~~t~~~~er~~ll~AL~ct~d~~ll~~~L~~~l 70 (127)
||++.|+.|.+-.++. ++++...+-.|+ -++|...++-+++...
T Consensus 44 GG~e~f~~i~~~~~~~-~~~~~ea~~~Ai-~~~dla~vk~~vn~~~ 87 (123)
T PF05396_consen 44 GGEEGFAAIMSHAEAN-SPAAAEAFNEAI-ESGDLATVKAAVNLAG 87 (123)
T ss_pred cCHHHHHHHHHHHHhC-CHHHHHHHHHHH-HhCCHHHHHHHHHHHH
Confidence 7899999999988555 999999999999 6788888888777654
No 10
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=71.63 E-value=22 Score=29.77 Aligned_cols=68 Identities=9% Similarity=0.243 Sum_probs=51.3
Q ss_pred hhhhcCCHHHHHHHHHHHhcC-CCHHHHHHHHHhhCCCCcHHHHHHHHHHhhcCCCCCcccHHHHHHHHh
Q psy13042 20 TRMENVGEEEWKKMWAKFREE-SNPQEQIKMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQDYFTVIVMVA 88 (127)
Q Consensus 20 ~~ir~g~~~~~~~l~~~y~~t-~~~~er~~ll~AL~ct~d~~ll~~~L~~~l~~~~v~~qd~~~v~~~v~ 88 (127)
..+|.-+.++...++++.... .....|..++.||+.+-.+.-+.-+++++.+++ +...+...++.++.
T Consensus 354 ~~lr~l~~~~L~~l~~~~~~~~~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~~-~~~~ea~~~l~~l~ 422 (618)
T PF01347_consen 354 RLLRTLSYEDLEELYKQLKSKSKKEQARKIFLDALPQAGTNPAVKFIKDLIKSKK-LTDDEAAQLLASLP 422 (618)
T ss_dssp HHHTTS-HHHHHHHHHHHTTS---HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT--S-HHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 667778888888888887765 567889999999998888888889999998877 88888888877764
No 11
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=64.12 E-value=13 Score=17.95 Aligned_cols=26 Identities=12% Similarity=0.286 Sum_probs=17.6
Q ss_pred HHHHhhCCCCcHHHHHHHHHHhhcCC
Q psy13042 48 KMLGGLSSVKEPKLLEKFLEMAKDEK 73 (127)
Q Consensus 48 ~ll~AL~ct~d~~ll~~~L~~~l~~~ 73 (127)
.++.+++...+++....+++.....+
T Consensus 6 ~ll~a~~~~g~~~~a~~~~~~M~~~g 31 (34)
T PF13812_consen 6 ALLRACAKAGDPDAALQLFDEMKEQG 31 (34)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 46677777777777777777665443
No 12
>KOG2297|consensus
Probab=62.37 E-value=79 Score=25.27 Aligned_cols=103 Identities=15% Similarity=0.134 Sum_probs=62.4
Q ss_pred eehhhhcCC-------HHHHHHHHHHHh--cCCCHHHHHHHHHhh-CCCCcHH-HHHHHHHHhhcCCCCCcccHHHHHHH
Q psy13042 18 RKTRMENVG-------EEEWKKMWAKFR--EESNPQEQIKMLGGL-SSVKEPK-LLEKFLEMAKDEKNIRSQDYFTVIVM 86 (127)
Q Consensus 18 yC~~ir~g~-------~~~~~~l~~~y~--~t~~~~er~~ll~AL-~ct~d~~-ll~~~L~~~l~~~~v~~qd~~~v~~~ 86 (127)
||+--...+ .-.|+.+..+|+ .-...++-.++|-.| +.+++.- .+..+-..++.++.++. +++.+
T Consensus 95 ~cvfda~e~~E~i~~~~qvf~KliRRykyLeK~fE~e~~k~Llflk~F~e~Er~KLA~~Tal~l~nGt~~~----tvl~~ 170 (412)
T KOG2297|consen 95 YCVFDAEEKREAIRNSVQVFQKLIRRYKYLEKNFENEMRKFLLFLKLFEENERKKLAMLTALLLSNGTLPA----TVLQS 170 (412)
T ss_pred eeEeecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCH----HHHHH
Confidence 566555444 234778888765 444566777777777 4443332 23334445565553443 44555
Q ss_pred Hh-cCCccHHHHHHHHHHhHHHH------hHHHhhhhhhhhhhhh
Q psy13042 87 VA-GNPKGLPVAWDYVKKNWDYL------GRLVTYLYQPTLVNKL 124 (127)
Q Consensus 87 v~-~~~~g~~~~w~fl~~N~~~i------~~li~~~~~~~~~~~~ 124 (127)
+. .|-+...++..|..+=|... ..+|+++-++..|++|
T Consensus 171 L~~d~LVkeGi~l~F~~~lFk~~~~Ek~i~~lis~Lrkg~md~rL 215 (412)
T KOG2297|consen 171 LLNDNLVKEGIALSFAVKLFKEWLVEKDINDLISSLRKGKMDDRL 215 (412)
T ss_pred HHHhhHHHHhHHHHHHHHHHHHHHhhccHHHHHHHHHhcChHhHH
Confidence 53 45555667777777666544 8888888888888887
No 13
>PRK13266 Thf1-like protein; Reviewed
Probab=51.97 E-value=91 Score=23.37 Aligned_cols=69 Identities=7% Similarity=0.132 Sum_probs=43.2
Q ss_pred CCCcccceeeeehhhhcCCHHHHHHHHHHHhcCCCHHHHHHHHHhh--CCCCcHHHHHHHHHHhhc--CCCCCcccHHHH
Q psy13042 8 FEAQVLKVYRRKTRMENVGEEEWKKMWAKFREESNPQEQIKMLGGL--SSVKEPKLLEKFLEMAKD--EKNIRSQDYFTV 83 (127)
Q Consensus 8 ~~~~~~~v~~yC~~ir~g~~~~~~~l~~~y~~t~~~~er~~ll~AL--~ct~d~~ll~~~L~~~l~--~~~v~~qd~~~v 83 (127)
.+=+..++|+ .|+ ...|+.+.+-|. .+++|..|.+|| |+--||..+++--.-+.. .+ ...+|+..+
T Consensus 44 ~~F~yDplfA--lGl----vt~fd~fm~GY~---Pee~~~~IF~Alc~a~~~dp~~~r~dA~~l~~~a~~-~s~~~i~~~ 113 (225)
T PRK13266 44 SDFKYDPLFA--LGL----VTVFDRFMQGYR---PEEHKDSIFNALCQAVGFDPEQLRQDAERLLELAKG-KSLKEILSW 113 (225)
T ss_pred cCceeCchHH--hhH----HHHHHHHHcCCC---ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CCHHHHHHH
Confidence 3345566755 777 467888888887 678899999999 445788777653333221 12 344555555
Q ss_pred HHH
Q psy13042 84 IVM 86 (127)
Q Consensus 84 ~~~ 86 (127)
+..
T Consensus 114 l~~ 116 (225)
T PRK13266 114 LTQ 116 (225)
T ss_pred Hhc
Confidence 443
No 14
>PLN03060 inositol phosphatase-like protein; Provisional
Probab=51.44 E-value=80 Score=23.33 Aligned_cols=50 Identities=6% Similarity=0.115 Sum_probs=35.6
Q ss_pred CCCcccceeeeehhhhcCCHHHHHHHHHHHhcCCCHHHHHHHHHhh--CCCCcHHHHHHHH
Q psy13042 8 FEAQVLKVYRRKTRMENVGEEEWKKMWAKFREESNPQEQIKMLGGL--SSVKEPKLLEKFL 66 (127)
Q Consensus 8 ~~~~~~~v~~yC~~ir~g~~~~~~~l~~~y~~t~~~~er~~ll~AL--~ct~d~~ll~~~L 66 (127)
.+=+..++|+ .|+ ...|+.+.+-|+ .+++|..|.+|| ++--||..+++--
T Consensus 42 ~~f~yD~lfA--lGl----vt~fd~fm~GY~---Pee~~~~IF~Alc~a~~~dp~~~r~dA 93 (206)
T PLN03060 42 ATYKYDPIFA--LGF----VTVYDQLMDGYP---NATDRDAIFKAYIEALGEDPDQYRKDA 93 (206)
T ss_pred cCceeCchHH--hhH----HHHHHHHHcCCC---ChHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 3345566755 777 467888888887 678899999999 4457887776533
No 15
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=48.63 E-value=69 Score=20.37 Aligned_cols=66 Identities=14% Similarity=0.169 Sum_probs=46.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhCCC-CcHHHHHHHHHHhhcCCCCCcccHHHHHHHHh-cCCccH
Q psy13042 29 EWKKMWAKFREESNPQEQIKMLGGLSSV-KEPKLLEKFLEMAKDEKNIRSQDYFTVIVMVA-GNPKGL 94 (127)
Q Consensus 29 ~~~~l~~~y~~t~~~~er~~ll~AL~ct-~d~~ll~~~L~~~l~~~~v~~qd~~~v~~~v~-~~~~g~ 94 (127)
....+.+.|.++.|..|-...+..|.+. ..+..+..++..+++.+.--...+..++..+. .+....
T Consensus 4 ~i~~~l~ey~~~~D~~ea~~~l~~L~~~~~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~~~~ 71 (113)
T smart00544 4 KIFLIIEEYLSSGDTDEAVHCLLELKLPEQHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANVIST 71 (113)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCCcCH
Confidence 3456778899999999999999999876 78889999999998763122234445555554 443333
No 16
>PF10045 DUF2280: Uncharacterized conserved protein (DUF2280); InterPro: IPR018738 This entry is represented by Burkholderia phage Bups phi1, Orf2.36. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=47.94 E-value=32 Score=22.60 Aligned_cols=37 Identities=8% Similarity=0.131 Sum_probs=29.2
Q ss_pred CHHHHHHHHHhhCCCCcHHHHHHHHHHhhcCCCCCccc
Q psy13042 42 NPQEQIKMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQD 79 (127)
Q Consensus 42 ~~~er~~ll~AL~ct~d~~ll~~~L~~~l~~~~v~~qd 79 (127)
.++.|.-|..+|+|...|..+-.....-+.=+ |.+|-
T Consensus 5 ~~~vK~FIVQ~LAcfdTPs~v~~aVk~eFgi~-vsrQq 41 (104)
T PF10045_consen 5 KKEVKAFIVQSLACFDTPSEVAEAVKEEFGID-VSRQQ 41 (104)
T ss_pred cHHHHHHHHHHHHhhCCHHHHHHHHHHHhCCc-cCHHH
Confidence 46778899999999999999888877766545 55554
No 17
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=47.49 E-value=55 Score=27.26 Aligned_cols=65 Identities=12% Similarity=0.101 Sum_probs=41.4
Q ss_pred cCCCHHHHHHHHHhhCCCCcHHHHHHHHHHhhcCCCCCcccHHHHHHHH---h--cCCccHHHHHHHHHH
Q psy13042 39 EESNPQEQIKMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQDYFTVIVMV---A--GNPKGLPVAWDYVKK 103 (127)
Q Consensus 39 ~t~~~~er~~ll~AL~ct~d~~ll~~~L~~~l~~~~v~~qd~~~v~~~v---~--~~~~g~~~~w~fl~~ 103 (127)
+..+.+++..+|.|||....|..+..+..++..+...+..-....+.++ + .....+++++..+.+
T Consensus 456 ~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n 525 (574)
T smart00638 456 SKGDEEEIQLYLKALGNAGHPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLN 525 (574)
T ss_pred hcCCchheeeHHHhhhccCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcC
Confidence 4567888999999999999999998888777622212222222222222 2 344566777776654
No 18
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=40.37 E-value=92 Score=19.43 Aligned_cols=43 Identities=12% Similarity=0.374 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCc---HHHHHHHHHH
Q psy13042 26 GEEEWKKMWAKFREESNPQEQIKMLGGLSSVKE---PKLLEKFLEM 68 (127)
Q Consensus 26 ~~~~~~~l~~~y~~t~~~~er~~ll~AL~ct~d---~~ll~~~L~~ 68 (127)
++..++.+.+.++.....++|..++.++..+.. ...+.++|+.
T Consensus 6 ~~~~f~~~~~~lk~~~fd~dkl~~l~~~~~~~~~~T~~Qv~~il~~ 51 (95)
T PF14771_consen 6 SDNDFEQFLEQLKKESFDSDKLKVLEAAAKTNNCFTCAQVKQILSL 51 (95)
T ss_pred CHHHHHHHHHHHHcCCCcHHHHHHHHHHHhcCCceeHHHHHHHHHH
Confidence 467899999999999999999999988866544 3445555553
No 19
>COG5556 Uncharacterized conserved protein [Function unknown]
Probab=37.48 E-value=42 Score=21.88 Aligned_cols=26 Identities=8% Similarity=0.245 Sum_probs=22.1
Q ss_pred CHHHHHHHHHhhCCCCcHHHHHHHHH
Q psy13042 42 NPQEQIKMLGGLSSVKEPKLLEKFLE 67 (127)
Q Consensus 42 ~~~er~~ll~AL~ct~d~~ll~~~L~ 67 (127)
+++-|..|..||+|...|..+.....
T Consensus 5 sdevKtfIvQalACFDs~S~Va~aVk 30 (110)
T COG5556 5 SDEVKTFIVQALACFDSPSVVAAAVK 30 (110)
T ss_pred cHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 56778999999999999998876655
No 20
>KOG0030|consensus
Probab=36.32 E-value=1.5e+02 Score=20.76 Aligned_cols=68 Identities=19% Similarity=0.218 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhcCCC----HHHHHHHHHhhCCCCcHHHHHHHHHHhhcC----CCCCcccHHHHHHHHhcCCccH
Q psy13042 27 EEEWKKMWAKFREESN----PQEQIKMLGGLSSVKEPKLLEKFLEMAKDE----KNIRSQDYFTVIVMVAGNPKGL 94 (127)
Q Consensus 27 ~~~~~~l~~~y~~t~~----~~er~~ll~AL~ct~d~~ll~~~L~~~l~~----~~v~~qd~~~v~~~v~~~~~g~ 94 (127)
.+++..++..|....| ..+--.+|+|||..+..+-+.+.|..-... ..+.-.++..++.+++.|..+.
T Consensus 10 ~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~ 85 (152)
T KOG0030|consen 10 MEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQG 85 (152)
T ss_pred HHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccC
Confidence 4678888888876543 344567999999998888888888765544 2244456778888888775543
No 21
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=34.29 E-value=32 Score=22.68 Aligned_cols=54 Identities=19% Similarity=0.177 Sum_probs=31.5
Q ss_pred HHHHHhcCCCHHHHHHHHHhhCCCCcH-HHHHHHHHHhhcCCCCCcccHHHHHHHHh
Q psy13042 33 MWAKFREESNPQEQIKMLGGLSSVKEP-KLLEKFLEMAKDEKNIRSQDYFTVIVMVA 88 (127)
Q Consensus 33 l~~~y~~t~~~~er~~ll~AL~ct~d~-~ll~~~L~~~l~~~~v~~qd~~~v~~~v~ 88 (127)
+-+.|...+..+-|...+-|+. +..| ....-+.+..++++ ..-+....++.+++
T Consensus 57 L~~~f~~~~Fe~~R~~alval~-v~~P~~~~~~L~~~f~~~~-~Sl~qR~~iL~~l~ 111 (114)
T PF10193_consen 57 LQNKFDIENFEELRQNALVALV-VAAPEKVAPYLTEEFFSGD-YSLQQRMSILSALS 111 (114)
T ss_dssp ---TT--TTTTHHHHHHHHHHH-HHSGGGHHH-HHHHHTTS----THHHHHHHHHHH
T ss_pred ccccCCccCHHHHHHHHHHHHH-HHhhHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 3344566677788999999984 4445 43444666677776 77788888877764
No 22
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=32.84 E-value=32 Score=28.77 Aligned_cols=71 Identities=13% Similarity=0.157 Sum_probs=41.5
Q ss_pred HHhcCCCHHHHHHHHHhhCCCCcHHHHHHHHHHhhcCCCCCcccHHHHHHHHh----cCC-ccHHHHHHHHHHhHH
Q psy13042 36 KFREESNPQEQIKMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQDYFTVIVMVA----GNP-KGLPVAWDYVKKNWD 106 (127)
Q Consensus 36 ~y~~t~~~~er~~ll~AL~ct~d~~ll~~~L~~~l~~~~v~~qd~~~v~~~v~----~~~-~g~~~~w~fl~~N~~ 106 (127)
...+..+.+++..+|.|||....|..+..++.++..+...+..-....+.++. ..| ..++++|.-+.+.-+
T Consensus 497 ~~~~~~~~~~~~~~LkaLgN~g~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n~~e 572 (618)
T PF01347_consen 497 EAVSRGDEEEKIVYLKALGNLGHPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREILLPIFMNTTE 572 (618)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHT-GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH-TTS
T ss_pred HHhhccCHHHHHHHHHHhhccCCchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCC
Confidence 34466788999999999999999988888888777653233222223333332 122 445666766665443
No 23
>TIGR03060 PS_II_psb29 photosystem II biogenesis protein Psp29. Psp29, originally designated sll1414 in Synechocystis 6803, is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.
Probab=32.35 E-value=60 Score=24.12 Aligned_cols=69 Identities=7% Similarity=0.114 Sum_probs=42.4
Q ss_pred CCCcccceeeeehhhhcCCHHHHHHHHHHHhcCCCHHHHHHHHHhh--CCCCcHHHHHHHHHHhhc--CCCCCcccHHHH
Q psy13042 8 FEAQVLKVYRRKTRMENVGEEEWKKMWAKFREESNPQEQIKMLGGL--SSVKEPKLLEKFLEMAKD--EKNIRSQDYFTV 83 (127)
Q Consensus 8 ~~~~~~~v~~yC~~ir~g~~~~~~~l~~~y~~t~~~~er~~ll~AL--~ct~d~~ll~~~L~~~l~--~~~v~~qd~~~v 83 (127)
.+=+..++|+ .|+ ...|+.+.+-|+ .+++|..|.+|| |+--||..+++--.-+.. .+ ...+|+..+
T Consensus 44 ~~F~yDplfA--lGl----vt~fd~fm~GY~---Pee~~~~IF~Alc~a~~~dp~~~r~dA~~l~~~a~~-~s~~~i~~~ 113 (214)
T TIGR03060 44 SDFKYDPLFA--LGL----VTVFDRFMEGYR---PEEHLDALFDALCNSNGFDPEQLREDAKQLLEQAKG-KGLDEILSW 113 (214)
T ss_pred cCceeCchHH--hhH----HHHHHHHHcCCC---ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc-CCHHHHHHH
Confidence 3345566755 777 467888888887 678899999999 445788776653332221 12 344555555
Q ss_pred HHH
Q psy13042 84 IVM 86 (127)
Q Consensus 84 ~~~ 86 (127)
+..
T Consensus 114 l~~ 116 (214)
T TIGR03060 114 LTQ 116 (214)
T ss_pred Hhc
Confidence 443
No 24
>KOG1567|consensus
Probab=32.26 E-value=94 Score=24.42 Aligned_cols=62 Identities=16% Similarity=0.281 Sum_probs=40.4
Q ss_pred CcccceeeeehhhhcCCHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCc-HHHHHHHHHHhhcCC
Q psy13042 10 AQVLKVYRRKTRMENVGEEEWKKMWAKFREESNPQEQIKMLGGLSSVKE-PKLLEKFLEMAKDEK 73 (127)
Q Consensus 10 ~~~~~v~~yC~~ir~g~~~~~~~l~~~y~~t~~~~er~~ll~AL~ct~d-~~ll~~~L~~~l~~~ 73 (127)
++.+..|.+=.++.+--.+.|..|.+.|. +|+.||..+.+|+.--+. ....+..|.++-+.+
T Consensus 111 ~ear~fygfqIaiENIHSEmYSlLidtyI--rD~ker~~LFnAI~t~p~vk~KAdWalrWI~d~~ 173 (344)
T KOG1567|consen 111 PEARCFYGFQIAIENIHSEMYSLLIDTYI--RDPKEREFLFNAIETIPEVKKKADWALRWISDKD 173 (344)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHh--cChhhhhHHHHHHHhhHHHHHHHHHHHHHhcCCC
Confidence 44555666334454555788999999997 478999999998844322 223455777775544
No 25
>PRK01381 Trp operon repressor; Provisional
Probab=32.19 E-value=72 Score=20.79 Aligned_cols=47 Identities=13% Similarity=0.241 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCcH--HHHHH--HHHHhhcCC
Q psy13042 26 GEEEWKKMWAKFREESNPQEQIKMLGGLSSVKEP--KLLEK--FLEMAKDEK 73 (127)
Q Consensus 26 ~~~~~~~l~~~y~~t~~~~er~~ll~AL~ct~d~--~ll~~--~L~~~l~~~ 73 (127)
+.++|+.+.+....+.+.++-..++.-| ||++. ++..+ +...++.++
T Consensus 5 ~~~~W~~~v~ll~~a~~~~~~~~~l~~l-lTp~Er~al~~R~~I~~~L~~g~ 55 (99)
T PRK01381 5 ENQEWQRFVDLLKQAFEEDLHLPLLTLL-LTPDEREALGTRVRIVEELLRGE 55 (99)
T ss_pred chhhHHHHHHHHHHhccHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHcCC
Confidence 4678999999999998888888888877 66554 22333 444455554
No 26
>PHA00435 capsid assembly protein
Probab=31.78 E-value=1.6e+02 Score=22.93 Aligned_cols=43 Identities=12% Similarity=0.370 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCcHHHHHHHHHHh
Q psy13042 25 VGEEEWKKMWAKFREESNPQEQIKMLGGLSSVKEPKLLEKFLEMA 69 (127)
Q Consensus 25 g~~~~~~~l~~~y~~t~~~~er~~ll~AL~ct~d~~ll~~~L~~~ 69 (127)
||.+.|..|......+ +++....+-.|+ -.+|-..++-++++.
T Consensus 197 GG~E~F~~i~shl~at-np~~~eal~~Av-e~~dl~t~K~ivnl~ 239 (306)
T PHA00435 197 GGRERFQAIYSHLEAT-NPSAAESLEAAI-ENRDLATVKAIINLA 239 (306)
T ss_pred ccHHHHHHHHHHHHhc-ChhHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence 7899999999887755 778888888888 567777777777665
No 27
>PF11264 ThylakoidFormat: Thylakoid formation protein; InterPro: IPR017499 Psp29, originally designated sll1414 (P73956 from SWISSPROT) in Synechocystis sp. (strain PCC 6803), is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.; GO: 0010027 thylakoid membrane organization, 0015979 photosynthesis, 0009523 photosystem II
Probab=30.59 E-value=2.3e+02 Score=21.09 Aligned_cols=46 Identities=7% Similarity=0.164 Sum_probs=33.1
Q ss_pred CcccceeeeehhhhcCCHHHHHHHHHHHhcCCCHHHHHHHHHhh--CCCCcHHHHHH
Q psy13042 10 AQVLKVYRRKTRMENVGEEEWKKMWAKFREESNPQEQIKMLGGL--SSVKEPKLLEK 64 (127)
Q Consensus 10 ~~~~~v~~yC~~ir~g~~~~~~~l~~~y~~t~~~~er~~ll~AL--~ct~d~~ll~~ 64 (127)
=+..++|+ .|+ ...|+.+.+-|. .++++..|.+|| +.--||..+++
T Consensus 41 F~yD~lfa--lG~----vt~fd~fm~GY~---p~~~~~~If~Alc~a~~~dp~~~r~ 88 (216)
T PF11264_consen 41 FQYDPLFA--LGL----VTVFDRFMQGYP---PEEDKDSIFNALCQALGFDPEQYRQ 88 (216)
T ss_pred ceeCchHH--hhH----HHHHHHHhcCCC---ChhHHHHHHHHHHHHcCCCHHHHHH
Confidence 34456654 766 466888888886 677899999999 44578877665
No 28
>COG2973 TrpR Trp operon repressor [Transcription]
Probab=29.68 E-value=1.6e+02 Score=19.31 Aligned_cols=60 Identities=13% Similarity=0.202 Sum_probs=37.1
Q ss_pred ehhhhcCCHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCcH--HHHHH--HHHHhhcCCCCCcccH
Q psy13042 19 KTRMENVGEEEWKKMWAKFREESNPQEQIKMLGGLSSVKEP--KLLEK--FLEMAKDEKNIRSQDY 80 (127)
Q Consensus 19 C~~ir~g~~~~~~~l~~~y~~t~~~~er~~ll~AL~ct~d~--~ll~~--~L~~~l~~~~v~~qd~ 80 (127)
-++++.....+|..+.+..+++-..+.-.-+|.-| -|+|. ++..+ +...+++++ ++.-++
T Consensus 3 ~s~~~~~~~q~W~~fv~ll~~a~~~d~~~~lL~ll-LTpdEReal~~Rv~Iv~eLL~ge-~sQREi 66 (103)
T COG2973 3 SSAMAEQREQEWLAFVDLLKKAYQEDLHQPLLTLL-LTPDEREALGTRVRIVEELLRGE-LSQREI 66 (103)
T ss_pred hhHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHH-cCHhHHHHHHHHHHHHHHHHhcc-ccHHHH
Confidence 36788888999999999998876555545555544 33332 33333 555666666 443333
No 29
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=28.76 E-value=4.5e+02 Score=24.60 Aligned_cols=74 Identities=15% Similarity=0.248 Sum_probs=47.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhC------------CC-CcHHHHHHHHHHhh-cCCCCCcccHHHHHHHHhcCCccH
Q psy13042 29 EWKKMWAKFREESNPQEQIKMLGGLS------------SV-KEPKLLEKFLEMAK-DEKNIRSQDYFTVIVMVAGNPKGL 94 (127)
Q Consensus 29 ~~~~l~~~y~~t~~~~er~~ll~AL~------------ct-~d~~ll~~~L~~~l-~~~~v~~qd~~~v~~~v~~~~~g~ 94 (127)
-+.++..+|.+..++..|+.+|..|. -+ ....+++.++.... -++.+ +.++..++.+++.+|...
T Consensus 620 ifSEi~~R~~~~~~~~~rr~mL~~LlPWvqnleL~~~~~~g~s~~vL~nL~~iT~k~~d~~-~~Eve~lW~~L~~~~~N~ 698 (1120)
T PF14228_consen 620 IFSEISQRFFNAVPPDARRDMLAYLLPWVQNLELVSLPESGWSEMVLNNLFYITIKFGDDH-PNEVEALWIALASNPQNI 698 (1120)
T ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHhhceecccCCCCcHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHhcCcccH
Confidence 35556667777777888888877651 01 12234444444432 22323 368888899888888888
Q ss_pred HHHHHHHHH
Q psy13042 95 PVAWDYVKK 103 (127)
Q Consensus 95 ~~~w~fl~~ 103 (127)
.++.+|+.+
T Consensus 699 ~~il~FLi~ 707 (1120)
T PF14228_consen 699 RVILDFLIE 707 (1120)
T ss_pred HHHHHHHHH
Confidence 899999885
No 30
>PF15063 TC1: Thyroid cancer protein 1
Probab=28.12 E-value=1.5e+02 Score=18.36 Aligned_cols=35 Identities=11% Similarity=0.360 Sum_probs=24.1
Q ss_pred HHHHHHHHhcCCC--HHHHHHHHHhhCCCCcHHHHHHHH
Q psy13042 30 WKKMWAKFREESN--PQEQIKMLGGLSSVKEPKLLEKFL 66 (127)
Q Consensus 30 ~~~l~~~y~~t~~--~~er~~ll~AL~ct~d~~ll~~~L 66 (127)
-..|...|+++.| .+||.+++ ++|..|+.-+.+.|
T Consensus 39 ~~qlqrLF~~sGD~kAEeRA~iI--~~~~~d~ee~a~AL 75 (79)
T PF15063_consen 39 LDQLQRLFQKSGDKKAEERARII--WECAQDPEEKARAL 75 (79)
T ss_pred HHHHHHHHHHccchhHHHHHHHH--HhhCCCHHHHHHHH
Confidence 4677888888886 45555555 67888988554544
No 31
>KOG3045|consensus
Probab=27.40 E-value=80 Score=24.64 Aligned_cols=34 Identities=12% Similarity=0.010 Sum_probs=25.3
Q ss_pred ccCCCCCCcccceeeeehhhhcCCHHHHHHHHHHHh
Q psy13042 3 IRGLGFEAQVLKVYRRKTRMENVGEEEWKKMWAKFR 38 (127)
Q Consensus 3 ~~~~~~~~~~~~v~~yC~~ir~g~~~~~~~l~~~y~ 38 (127)
|+.++.+..+--|.+||.++.. ....+++.+.|+
T Consensus 219 m~~vPl~d~svDvaV~CLSLMg--tn~~df~kEa~R 252 (325)
T KOG3045|consen 219 MRNVPLEDESVDVAVFCLSLMG--TNLADFIKEANR 252 (325)
T ss_pred ccCCcCccCcccEEEeeHhhhc--ccHHHHHHHHHH
Confidence 5677777777777779999984 455677777765
No 32
>PF01371 Trp_repressor: Trp repressor protein; InterPro: IPR000831 The Trp repressor (TrpR) binds to at least five operators in the Escherichia coli genome, repressing gene expression. The operators at which it binds vary considerably in DNA sequence and location within the promoter; when bound to the Trp operon it recognises the sequence 5'-ACTAGT-3' and acts to prevent the initiation of transcription. The TrpR controls the trpEDCBA (trpO) operon and the genes for trpR, aroH, mtr and aroL, which are involved in the biosynthesis and uptake of the amino acid tryptophan []. The repressor binds to the operators only in the presence of L-tryptophan, thereby controlling the intracellular level of its effector; the complex also regulates Trp repressor biosynthesis by binding to its own regulatory region. TrpR acts as a dimer that is composed of identical 6-helical subunits, where four of the helices form the core of the protein and intertwine with the corresponding helices from the other subunit.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3FRW_H 3KOR_A 3SSW_N 1P6Z_N 1CO0_B 1JHG_A 1WRT_S 1WRS_R 1WRP_R 1RCS_B ....
Probab=26.18 E-value=46 Score=21.09 Aligned_cols=31 Identities=10% Similarity=0.384 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhhCCCCcH
Q psy13042 28 EEWKKMWAKFREESNPQEQIKMLGGLSSVKEP 59 (127)
Q Consensus 28 ~~~~~l~~~y~~t~~~~er~~ll~AL~ct~d~ 59 (127)
+.|+.+.+...+..++++-..++..| ||++.
T Consensus 1 ~~~~~l~~~i~~l~~~ee~~~f~~dL-~T~~E 31 (87)
T PF01371_consen 1 QDWDELFEAILSLKDEEECYDFFEDL-CTPDE 31 (87)
T ss_dssp HHHHHHHHHHHCHHCHHCHHHHHHHH-SSHHH
T ss_pred ChHHHHHHHHHHcCCHHHHHHHHHHh-CCHHH
Confidence 36889999999999999988898888 66554
No 33
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=25.61 E-value=90 Score=14.79 Aligned_cols=25 Identities=4% Similarity=0.062 Sum_probs=17.0
Q ss_pred HHHHHHHhhCCCCcHHHHHHHHHHh
Q psy13042 45 EQIKMLGGLSSVKEPKLLEKFLEMA 69 (127)
Q Consensus 45 er~~ll~AL~ct~d~~ll~~~L~~~ 69 (127)
.|.....+||...++.-+..+.+.+
T Consensus 3 vR~~aa~aLg~~~~~~a~~~L~~~l 27 (30)
T smart00567 3 VRHEAAFALGQLGDEEAVPALIKAL 27 (30)
T ss_pred HHHHHHHHHHHcCCHhHHHHHHHHh
Confidence 3566778888877877776655543
No 34
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=25.42 E-value=54 Score=18.02 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=9.9
Q ss_pred HHhcCCCHHHHHHHHHhhC
Q psy13042 36 KFREESNPQEQIKMLGGLS 54 (127)
Q Consensus 36 ~y~~t~~~~er~~ll~AL~ 54 (127)
+|..+.++.+|..++.+|+
T Consensus 14 ~fl~~~~~~~~~~llpvi~ 32 (46)
T PF01465_consen 14 QFLESREPSEREQLLPVIA 32 (46)
T ss_dssp HHHTTSS---HHHHHHHHH
T ss_pred HHhcCCchhhHHHHHHHHH
Confidence 4556666677777766653
No 35
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=25.40 E-value=2.4e+02 Score=19.60 Aligned_cols=14 Identities=21% Similarity=0.309 Sum_probs=7.0
Q ss_pred CCcccHHHHHHHHh
Q psy13042 75 IRSQDYFTVIVMVA 88 (127)
Q Consensus 75 v~~qd~~~v~~~v~ 88 (127)
+.++|...++.+..
T Consensus 113 ~t~~dy~~li~~~l 126 (145)
T PF13762_consen 113 FTPSDYSCLIKAAL 126 (145)
T ss_pred CCHHHHHHHHHHHH
Confidence 45555555555443
No 36
>PF06782 UPF0236: Uncharacterised protein family (UPF0236); InterPro: IPR009620 This is a group of proteins of unknown function.
Probab=25.18 E-value=1.8e+02 Score=23.99 Aligned_cols=57 Identities=25% Similarity=0.328 Sum_probs=30.8
Q ss_pred HHHHHhhCCCCcHHHHHHHHHHhhcCCCCCcccHHHHHHHHh---cCCccH---HHHHHHHHHhHHHH
Q psy13042 47 IKMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQDYFTVIVMVA---GNPKGL---PVAWDYVKKNWDYL 108 (127)
Q Consensus 47 ~~ll~AL~ct~d~~ll~~~L~~~l~~~~v~~qd~~~v~~~v~---~~~~g~---~~~w~fl~~N~~~i 108 (127)
+.|-.++++ +|...+.+...+-..+ .+.+..++..+. ..+..+ .-+..||..||+.|
T Consensus 291 k~i~~~~~~--~~~~~~~~~~al~~~d---~~~l~~~L~~~~~~~~~~~~~~~i~~~~~Yl~~n~~~i 353 (470)
T PF06782_consen 291 KKIKQALSH--DPELKEKIRKALKKGD---KKKLETVLDTAESCAKDEEERKKIRKLRKYLLNNWDGI 353 (470)
T ss_pred HHHHHHhhh--ChHHHHHHHHHHHhcC---HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHCHHHh
Confidence 444555554 4555555555444333 244444444442 222222 35689999999998
No 37
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=24.43 E-value=90 Score=14.41 Aligned_cols=24 Identities=8% Similarity=0.185 Sum_probs=12.4
Q ss_pred HHHhhCCCCcHHHHHHHHHHhhcC
Q psy13042 49 MLGGLSSVKEPKLLEKFLEMAKDE 72 (127)
Q Consensus 49 ll~AL~ct~d~~ll~~~L~~~l~~ 72 (127)
++.+++...+.....+++......
T Consensus 6 li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 6 LIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHc
Confidence 455555555555555555554433
No 38
>PLN00047 photosystem II biogenesis protein Psb29; Provisional
Probab=24.40 E-value=76 Score=24.62 Aligned_cols=48 Identities=6% Similarity=0.146 Sum_probs=34.3
Q ss_pred CCCcccceeeeehhhhcCCHHHHHHHHHHHhcCCCHHHHHHHHHhh--CCCCcHHHHHH
Q psy13042 8 FEAQVLKVYRRKTRMENVGEEEWKKMWAKFREESNPQEQIKMLGGL--SSVKEPKLLEK 64 (127)
Q Consensus 8 ~~~~~~~v~~yC~~ir~g~~~~~~~l~~~y~~t~~~~er~~ll~AL--~ct~d~~ll~~ 64 (127)
.+=+.+++|+ .|+ ...|+.+.+-|. .+++|..|.+|| +.-.||+.+++
T Consensus 95 ~~F~yDplFA--LGl----Vtvfd~fm~GY~---Pee~~~~IF~Alc~a~g~Dp~qyr~ 144 (283)
T PLN00047 95 KTYRYDPVFA--LGF----VTVYDQLMEGYP---SDEDRDAIFKAYIKALGEDPEQYRK 144 (283)
T ss_pred cCceeCchhh--hhh----HHHHHHHHccCC---ChHHHHHHHHHHHHHcCCCHHHHHH
Confidence 3345566755 776 467888888887 678899999999 44578877655
No 39
>PF05106 Phage_holin_3: Phage holin family (Lysis protein S); InterPro: IPR006481 This entry is represented by the Bacteriophage lambda, GpS. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=24.20 E-value=1.3e+02 Score=19.31 Aligned_cols=20 Identities=15% Similarity=0.415 Sum_probs=16.5
Q ss_pred cCCccHHHHHHHHHHhHHHH
Q psy13042 89 GNPKGLPVAWDYVKKNWDYL 108 (127)
Q Consensus 89 ~~~~g~~~~w~fl~~N~~~i 108 (127)
.+|..=..+++|+.+||+.+
T Consensus 3 k~P~~W~~ll~wl~~~~~~~ 22 (100)
T PF05106_consen 3 KNPDFWAQLLAWLQSHWPQI 22 (100)
T ss_pred CCccHHHHHHHHHHHHHHHH
Confidence 46777778889999999988
No 40
>KOG4337|consensus
Probab=23.98 E-value=2.1e+02 Score=25.26 Aligned_cols=84 Identities=15% Similarity=0.268 Sum_probs=54.1
Q ss_pred eehhhhcCCHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCcHHHHHHHHHHhhcCCCCCcccHH----HHHHHHh-cCCc
Q psy13042 18 RKTRMENVGEEEWKKMWAKFREESNPQEQIKMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQDYF----TVIVMVA-GNPK 92 (127)
Q Consensus 18 yC~~ir~g~~~~~~~l~~~y~~t~~~~er~~ll~AL~ct~d~~ll~~~L~~~l~~~~v~~qd~~----~v~~~v~-~~~~ 92 (127)
.|-..|.-++.-+.+....|+++.-. ..+---|.|.++...+..+|..+ .++ +|++. ..+..++ .-|.
T Consensus 526 i~~~~kk~~~~i~hq~~k~f~~t~rT---lA~dIiL~~~P~~~~v~n~ll~l-~~~---dqE~~~Y~l~~i~ml~~~~p~ 598 (896)
T KOG4337|consen 526 ICQTKKKIGAPITHQLIKLFRNTTRT---LAIDIILKCVPDHQNVANLLLTL-NPD---DQEKWHYLLKAIEMLSGNKPE 598 (896)
T ss_pred hhHHHHHhcchHHHHHHHHHhcchhH---HHHHHHHhcCccHHHHHHHHHHh-CCC---hHHHHHHHHHHHHHHhccCch
Confidence 45667766778889999999988433 22334468999999998888744 332 24433 3334344 5677
Q ss_pred cHHHHHH----HHHHhHHHH
Q psy13042 93 GLPVAWD----YVKKNWDYL 108 (127)
Q Consensus 93 g~~~~w~----fl~~N~~~i 108 (127)
.+...|. |...|++.+
T Consensus 599 ~ka~f~s~~k~~~v~nyn~l 618 (896)
T KOG4337|consen 599 LKAEFWSRMKKFKVFNYNFL 618 (896)
T ss_pred HHHHHHHHHHHHhccChhhh
Confidence 7777773 444577777
No 41
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=23.56 E-value=3.2e+02 Score=20.72 Aligned_cols=89 Identities=11% Similarity=0.252 Sum_probs=49.0
Q ss_pred ceeeeehhhhcCCHHHHHHHHHHHhcCCC----------HHHHHHHHHhhCCCCcHHHHHHHHHHhhcCC---CCCcccH
Q psy13042 14 KVYRRKTRMENVGEEEWKKMWAKFREESN----------PQEQIKMLGGLSSVKEPKLLEKFLEMAKDEK---NIRSQDY 80 (127)
Q Consensus 14 ~v~~yC~~ir~g~~~~~~~l~~~y~~t~~----------~~er~~ll~AL~ct~d~~ll~~~L~~~l~~~---~v~~qd~ 80 (127)
.+|+.|.-..-.....+.-+.+.+..+.+ +++=..++.+++- -+++.+++++ .+++ -+| ...
T Consensus 59 ~~~a~~LLaq~re~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~-G~~~~L~~li---~~~~~~~yvR-~aa 133 (249)
T PF06685_consen 59 HFYALYLLAQFREERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGD-GDIEPLKELI---EDPDADEYVR-MAA 133 (249)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhC-CCHHHHHHHH---hCCcHHHHHH-HHH
Confidence 34443444444556677888887765543 3334556666633 3444555543 3332 133 233
Q ss_pred HHHHHHH-hcCCccHHHHHHHHHHhHHH
Q psy13042 81 FTVIVMV-AGNPKGLPVAWDYVKKNWDY 107 (127)
Q Consensus 81 ~~v~~~v-~~~~~g~~~~w~fl~~N~~~ 107 (127)
...+..+ ..+|..|+.+-+||++=+..
T Consensus 134 ~~aL~~l~~~~~~~Re~vi~~f~~ll~~ 161 (249)
T PF06685_consen 134 ISALAFLVHEGPISREEVIQYFRELLNY 161 (249)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3334444 47888888888888875554
No 42
>PF06628 Catalase-rel: Catalase-related immune-responsive; InterPro: IPR010582 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen, serving to protect cells from its toxic effects []. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. Most catalases are mono-functional, haem-containing enzymes, although there are also bifunctional haem-containing peroxidase/catalases (IPR000763 from INTERPRO) that are closely related to plant peroxidases, and non-haem, manganese-containing catalases (IPR007760 from INTERPRO) that are found in bacteria []. This entry represents a small conserved region within catalase enzymes that carries the immune-responsive amphipathic octa-peptide that is recognised by T cells [].; PDB: 2CAH_A 1NM0_A 1H7K_A 1E93_A 1H6N_A 3HB6_A 2CAG_A 1M85_A 1MQF_A 1A4E_C ....
Probab=23.43 E-value=1e+02 Score=18.17 Aligned_cols=42 Identities=19% Similarity=0.390 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHH----HhhCCCCcHHHHHHHHHHhh
Q psy13042 28 EEWKKMWAKFREESNPQEQIKML----GGLSSVKEPKLLEKFLEMAK 70 (127)
Q Consensus 28 ~~~~~l~~~y~~t~~~~er~~ll----~AL~ct~d~~ll~~~L~~~l 70 (127)
+.|.+-...|+ .=++.+|..++ ..|+-+.++.+..+.+.+..
T Consensus 8 ddf~Qa~~ly~-~l~~~er~~lv~nia~~l~~v~~~~i~~r~l~~f~ 53 (68)
T PF06628_consen 8 DDFSQARDLYR-VLSDEERERLVENIAGHLSGVSDEEIQERVLAYFY 53 (68)
T ss_dssp CSSHHHHHHHH-HSSHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHH
T ss_pred cchhhHHHHHH-HCCHHHHHHHHHHHHHHHccCChhhHHHHHHHHHH
Confidence 44666666676 44788887766 55667777778888887654
No 43
>PF05131 Pep3_Vps18: Pep3/Vps18/deep orange family; InterPro: IPR007810 This region is found in a number of proteins identified as being involved in Golgi function and vacuolar sorting. The molecular function of this region is unknown. Proteins containing this domain also contain a C-terminal ring finger domain.
Probab=23.28 E-value=1e+02 Score=21.34 Aligned_cols=55 Identities=22% Similarity=0.267 Sum_probs=31.5
Q ss_pred cccCCCCCCcccceeeeeh------hhhcCCHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCc-HHHHHHHH
Q psy13042 2 KIRGLGFEAQVLKVYRRKT------RMENVGEEEWKKMWAKFREESNPQEQIKMLGGLSSVKE-PKLLEKFL 66 (127)
Q Consensus 2 ~~~~~~~~~~~~~v~~yC~------~ir~g~~~~~~~l~~~y~~t~~~~er~~ll~AL~ct~d-~~ll~~~L 66 (127)
++.|+..++...++|+|.. .+..-+...|..++++ ..+-.||.+.++ |+..+.++
T Consensus 76 ~~~gl~~D~~~~t~W~ys~~~I~ei~i~~E~r~vWk~yl~~----------~~fd~Al~~~~~~~~~~d~V~ 137 (147)
T PF05131_consen 76 KILGLCRDPSSNTFWLYSSNSIFEIVINNEDRDVWKIYLDK----------GDFDEALQYCKTNPAQRDQVL 137 (147)
T ss_pred ceeeEEEcCCCCeEEEEeCCeeEEEEcCcchHHHHHHHHhc----------CcHHHHHHHccCCHHHHHHHH
Confidence 4566777777676765443 3444455556555544 345567766666 65554443
No 44
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=23.05 E-value=1e+02 Score=23.15 Aligned_cols=28 Identities=25% Similarity=0.499 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHhh
Q psy13042 26 GEEEWKKMWAKFREESNPQEQIKMLGGL 53 (127)
Q Consensus 26 ~~~~~~~l~~~y~~t~~~~er~~ll~AL 53 (127)
|-+.|+.+|+++.+++++++|.++-.=|
T Consensus 20 G~~~F~~i~~K~~~~~n~~QKEK~E~DL 47 (233)
T PF04065_consen 20 GVEEFDEIYEKVESATNQNQKEKLEADL 47 (233)
T ss_pred HHHHHHHHHHHHHcccCcchHHHHHHHH
Confidence 5688999999999999999987776554
No 45
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=22.38 E-value=3e+02 Score=23.95 Aligned_cols=31 Identities=16% Similarity=0.179 Sum_probs=25.0
Q ss_pred HHHHHHHHHhhCCCCcHHHHHHHHHHhhcCC
Q psy13042 43 PQEQIKMLGGLSSVKEPKLLEKFLEMAKDEK 73 (127)
Q Consensus 43 ~~er~~ll~AL~ct~d~~ll~~~L~~~l~~~ 73 (127)
.+-|..+..-|.+.+++|++..++++-+...
T Consensus 22 ~~~~~~~~~~~~~~~~~~l~~~l~~y~~~t~ 52 (668)
T PF04388_consen 22 EEIKALLQELLNSDREPWLVNGLVDYYLSTN 52 (668)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHhhcC
Confidence 3446677788899999999999999977553
No 46
>KOG3192|consensus
Probab=22.19 E-value=2.4e+02 Score=20.08 Aligned_cols=42 Identities=17% Similarity=0.262 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHH-HhhC-------CCCcHHHHHHHHHH
Q psy13042 27 EEEWKKMWAKFREESNPQEQIKML-GGLS-------SVKEPKLLEKFLEM 68 (127)
Q Consensus 27 ~~~~~~l~~~y~~t~~~~er~~ll-~AL~-------ct~d~~ll~~~L~~ 68 (127)
.+.-..+-+.|.+-+++--|..+| ...| -+.||.++-.+|+.
T Consensus 55 ~eqSa~lnkAY~TLk~pL~RA~Yilkl~g~e~~sne~stDpe~Lmevle~ 104 (168)
T KOG3192|consen 55 SEQSAELNKAYDTLKDPLARARYLLKLKGQEQTSNELSTDPEFLMEVLEY 104 (168)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCchhhhccCHHHHHHHHHH
Confidence 455678888999999999998755 5667 56699999998886
No 47
>PF09127 Leuk-A4-hydro_C: Leukotriene A4 hydrolase, C-terminal; InterPro: IPR015211 This C-terminal domain is found in peptidases belonging to MEROPS peptidase family M1, particularly: aminopeptidase-1 of Caenorhabditis elegans, aminopeptidase O, aminopeptidase B and the bifunctional leukotriene A4 hydrolase/aminopeptidase. The domain adopts a structure consisting of two layers of parallel alpha-helices, five in the inner layer and four in the outer, arranged in an antiparallel manner, with perpendicular loops containing short helical segments on top. It is required for the formation of a deep cleft harbouring the catalytic Zn2+ site in leukotriene A4 hydrolase []. ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0019370 leukotriene biosynthetic process; PDB: 3FUJ_A 3FU3_A 3FTX_A 3FTS_A 3B7R_L 2VJ8_A 3FTW_A 3FUF_A 3FU0_A 3CHO_A ....
Probab=21.95 E-value=2.7e+02 Score=18.95 Aligned_cols=79 Identities=20% Similarity=0.252 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHHhcCC-CHHHHHHHH---HhhCCCCcHHHHHHHHHHhhcCC--C-----------C-CcccHHHHHHHH
Q psy13042 26 GEEEWKKMWAKFREES-NPQEQIKML---GGLSSVKEPKLLEKFLEMAKDEK--N-----------I-RSQDYFTVIVMV 87 (127)
Q Consensus 26 ~~~~~~~l~~~y~~t~-~~~er~~ll---~AL~ct~d~~ll~~~L~~~l~~~--~-----------v-~~qd~~~v~~~v 87 (127)
+...|..+++...... -+.++...| -.|+.++|.++.-+-+.+++..+ . + +---+..++..+
T Consensus 32 ~~~Q~~~FL~~L~~~~~l~~~~l~~Ld~~y~l~~s~NaEI~~rW~~l~i~~~~~~~~~~v~~fL~~~GRmKfvrPlYr~L 111 (143)
T PF09127_consen 32 SSNQWVVFLDQLLEPKPLSPEKLQALDKVYKLSNSKNAEIRFRWLRLAIKAKYEPALPQVEEFLGSQGRMKFVRPLYRAL 111 (143)
T ss_dssp -HHHHHHHHHHHHTCCG-CHHHHHHHHHHHCHCT-SSHHHHHHHHHHHHHTT-GGGHHHHHHHHHHS--HHHHHHHHHHH
T ss_pred CHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCChhHHHHHHHH
Confidence 3556666777663332 233333333 24577778887777777766543 0 0 111222345555
Q ss_pred hcCCccHHHHHHHHHHhH
Q psy13042 88 AGNPKGLPVAWDYVKKNW 105 (127)
Q Consensus 88 ~~~~~g~~~~w~fl~~N~ 105 (127)
.. +.+++.+-+.|.++-
T Consensus 112 ~~-~~~~~~A~~~F~~~k 128 (143)
T PF09127_consen 112 AK-PEGRDLAKETFEKAK 128 (143)
T ss_dssp HT-TTCHHHHHHHHHHHG
T ss_pred Hc-cchHHHHHHHHHHHH
Confidence 55 777777777766653
No 48
>PRK09687 putative lyase; Provisional
Probab=20.84 E-value=3.8e+02 Score=20.33 Aligned_cols=31 Identities=13% Similarity=0.247 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHhhCCCCcHHHHHHHHHHhhc
Q psy13042 41 SNPQEQIKMLGGLSSVKEPKLLEKFLEMAKD 71 (127)
Q Consensus 41 ~~~~er~~ll~AL~ct~d~~ll~~~L~~~l~ 71 (127)
.++.-|.....|||+.+++..+.-++..+-+
T Consensus 140 ~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d 170 (280)
T PRK09687 140 KSTNVRFAVAFALSVINDEAAIPLLINLLKD 170 (280)
T ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhcC
Confidence 3667777777777777777777666665543
No 49
>PF09958 DUF2192: Uncharacterized protein conserved in archaea (DUF2192); InterPro: IPR018693 This family of various hypothetical archaeal proteins has no known function.
Probab=20.61 E-value=3.8e+02 Score=20.20 Aligned_cols=65 Identities=11% Similarity=0.111 Sum_probs=39.5
Q ss_pred HHHhcCCCHHHHHHHHH-hhCCCCcHHHHHHHHHHhhcCCC---CCcccHHHHHHHHh-cCCccHHHHHHH
Q psy13042 35 AKFREESNPQEQIKMLG-GLSSVKEPKLLEKFLEMAKDEKN---IRSQDYFTVIVMVA-GNPKGLPVAWDY 100 (127)
Q Consensus 35 ~~y~~t~~~~er~~ll~-AL~ct~d~~ll~~~L~~~l~~~~---v~~qd~~~v~~~v~-~~~~g~~~~w~f 100 (127)
+...+....+.+.++-+ .+|.+ +...+.++|.++|++.. .+..++..++..+. ..|.-...+-+|
T Consensus 96 ~~i~~~~~~ea~~~~~~~~~g~~-de~~vaR~LR~~fT~~vlgF~~E~~l~k~lr~~~~a~pe~~~t~~~y 165 (231)
T PF09958_consen 96 EIILEEEVEEARKKVKNEIKGKS-DENKVARVLRLVFTKVVLGFFDEEELIKALRKLEEAFPELKETARSY 165 (231)
T ss_pred HHHhccchHHHHHHHhhhccCCc-hHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhChHHHHHHHHH
Confidence 33434444444666665 44656 99999999999998842 34445666666663 455555544444
No 50
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=20.39 E-value=3.7e+02 Score=20.03 Aligned_cols=63 Identities=13% Similarity=0.125 Sum_probs=43.8
Q ss_pred CCCHHHHHHHHHhhCCCCcHHHHHHHHHHhhcCCCCCcccHHHHHHHHh--cCCccHHHHHHHHHHh
Q psy13042 40 ESNPQEQIKMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQDYFTVIVMVA--GNPKGLPVAWDYVKKN 104 (127)
Q Consensus 40 t~~~~er~~ll~AL~ct~d~~ll~~~L~~~l~~~~v~~qd~~~v~~~v~--~~~~g~~~~w~fl~~N 104 (127)
+-+++-|..++.+.....+....+.+++...... .+.+...++.+++ .+|....-+|+++.++
T Consensus 166 ~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~--~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~ 230 (324)
T PF11838_consen 166 SIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNST--SPEEKRRLLSALACSPDPELLKRLLDLLLSN 230 (324)
T ss_dssp TS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTS--THHHHHHHHHHHTT-S-HHHHHHHHHHHHCT
T ss_pred ccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccC--CHHHHHHHHHhhhccCCHHHHHHHHHHHcCC
Confidence 3478889998888877788877888888776554 4677788888885 4566666777777774
No 51
>PF07560 DUF1539: Domain of Unknown Function (DUF1539); InterPro: IPR011436 This domain is found in a small number of Chlamydia proteins of unknown function. It occurs together with IPR013044 from INTERPRO.
Probab=20.29 E-value=2.1e+02 Score=19.44 Aligned_cols=36 Identities=14% Similarity=0.371 Sum_probs=22.1
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHhcCCccHHHHH
Q psy13042 62 LEKFLEMAKDEKNIRSQDYFTVIVMVAGNPKGLPVAW 98 (127)
Q Consensus 62 l~~~L~~~l~~~~v~~qd~~~v~~~v~~~~~g~~~~w 98 (127)
+.+++..+-++. |+......++..++.....-..+|
T Consensus 69 m~~l~~aL~dp~-Is~erK~~~l~yIaSya~~c~pTW 104 (126)
T PF07560_consen 69 MHQLIKALQDPT-ISKERKREALNYIASYADACPPTW 104 (126)
T ss_pred HHHHHHHhcCCC-CChHHHHHHHHHHHHHhccCchhH
Confidence 444444333445 777777788888876555555555
Done!