Query psy13042
Match_columns 127
No_of_seqs 118 out of 1025
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 18:00:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13042.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13042hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rjo_A Endoplasmic reticulum a 99.9 5.7E-24 1.9E-28 167.9 11.4 99 7-108 234-332 (419)
2 4fke_A Aminopeptidase N; zinc 99.9 3.2E-22 1.1E-26 170.7 9.3 103 5-108 721-823 (909)
3 2xdt_A Endoplasmic reticulum a 99.8 3.9E-21 1.3E-25 163.8 10.8 99 7-108 717-815 (897)
4 3se6_A Endoplasmic reticulum a 99.8 2.9E-21 9.8E-26 165.7 10.0 99 7-108 785-883 (967)
5 1z5h_A Tricorn protease intera 99.8 8E-19 2.7E-23 147.8 7.8 98 7-108 616-713 (780)
6 2gtq_A Aminopeptidase N; alani 96.6 0.0014 4.7E-08 56.0 3.9 87 20-108 720-812 (867)
7 1lsh_A Lipovitellin (LV-1N, LV 68.1 19 0.00066 31.3 7.8 80 20-102 318-401 (1056)
8 3l6a_A Eukaryotic translation 62.4 25 0.00087 26.8 6.8 79 30-108 15-99 (364)
9 2rg8_A Programmed cell death p 55.5 44 0.0015 22.4 8.5 79 29-108 12-95 (165)
10 2zu6_B Programmed cell death p 52.1 52 0.0018 24.5 6.9 80 28-108 4-88 (307)
11 3eiq_C Programmed cell death p 33.0 1.5E+02 0.0052 22.5 6.9 45 29-73 56-101 (358)
12 1te4_A Conserved protein MTH18 29.7 85 0.0029 19.2 4.3 43 30-73 44-86 (131)
13 1ug3_A EIF4GI, eukaryotic prot 28.8 1.8E+02 0.006 21.5 8.8 81 28-108 12-97 (339)
14 2jtt_C Calcyclin-binding prote 27.4 26 0.00087 17.7 1.1 27 27-54 6-32 (35)
15 3o48_A Mitochondria fission 1 26.1 1.4E+02 0.0048 19.5 5.8 42 26-67 19-64 (134)
16 4g26_A Pentatricopeptide repea 25.7 1.4E+02 0.0048 23.3 5.7 46 42-87 139-184 (501)
17 2nsz_A Programmed cell death p 25.6 1.3E+02 0.0045 19.0 8.8 81 28-108 8-94 (129)
18 2ion_A PDCD4, programmed cell 25.4 1.5E+02 0.005 19.5 8.7 81 28-108 10-96 (152)
19 3s9x_A ASCH domain; MCSG, PSI- 22.1 89 0.003 21.1 3.4 46 28-73 8-55 (159)
20 3ltm_A Alpha-REP4; protein eng 21.7 73 0.0025 21.0 3.0 37 30-67 21-57 (211)
No 1
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=99.91 E-value=5.7e-24 Score=167.90 Aligned_cols=99 Identities=20% Similarity=0.483 Sum_probs=93.5
Q ss_pred CCCCcccceeeeehhhhcCCHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCcHHHHHHHHHHhhcCCCCCcccHHHHHHH
Q psy13042 7 GFEAQVLKVYRRKTRMENVGEEEWKKMWAKFREESNPQEQIKMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQDYFTVIVM 86 (127)
Q Consensus 7 ~~~~~~~~v~~yC~~ir~g~~~~~~~l~~~y~~t~~~~er~~ll~AL~ct~d~~ll~~~L~~~l~~~~v~~qd~~~v~~~ 86 (127)
.+|++.+.+. ||+++++ +++|++++++|+++++++||..++.||||++||++++++|+++++++.|++||+..++.+
T Consensus 234 ~i~~dlr~~V-y~~~~~~--~~~~~~l~~~y~~s~~~~ek~~ll~aL~~s~d~~ll~~~L~~~l~~~~ir~qD~~~~~~~ 310 (419)
T 3rjo_A 234 SLPVDVTLAV-FAVGAQS--TEGWDFLYSKYQFSLSSTEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQILTL 310 (419)
T ss_dssp CCCGGGHHHH-HHHHTTS--HHHHHHHHHHHHHCCCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTSSSCGGGHHHHHHH
T ss_pred CCCCCcceeE-EeeeeCC--HHHHHHHHHHHhcCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHH
Confidence 5788877664 8999997 899999999999999999999999999999999999999999999886799999999999
Q ss_pred HhcCCccHHHHHHHHHHhHHHH
Q psy13042 87 VAGNPKGLPVAWDYVKKNWDYL 108 (127)
Q Consensus 87 v~~~~~g~~~~w~fl~~N~~~i 108 (127)
+++||.|++++|+|+++||+.|
T Consensus 311 v~~n~~g~~~aw~fl~~nw~~l 332 (419)
T 3rjo_A 311 IGRNPVGYPLAWQFLRKNWNKL 332 (419)
T ss_dssp HHTSTTTHHHHHHHHHHHHHHH
T ss_pred HhcCcchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999
No 2
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=99.87 E-value=3.2e-22 Score=170.68 Aligned_cols=103 Identities=25% Similarity=0.467 Sum_probs=97.3
Q ss_pred CCCCCCcccceeeeehhhhcCCHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCcHHHHHHHHHHhhcCCCCCcccHHHHH
Q psy13042 5 GLGFEAQVLKVYRRKTRMENVGEEEWKKMWAKFREESNPQEQIKMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQDYFTVI 84 (127)
Q Consensus 5 ~~~~~~~~~~v~~yC~~ir~g~~~~~~~l~~~y~~t~~~~er~~ll~AL~ct~d~~ll~~~L~~~l~~~~v~~qd~~~v~ 84 (127)
+..+|++.+.+. ||+++++|++++|++++++|+++++++||..++.||||++|+++++++|+++++++.|++||...++
T Consensus 721 ~~~i~~dlr~~v-y~~~~~~g~~~~~~~l~~~~~~~~~~~ek~~ll~aL~~~~d~~~l~~~L~~~l~~~~ir~qd~~~~~ 799 (909)
T 4fke_A 721 NNPIHPNLRSTI-YCNAIAQGGQDQWDFAWGQLQQAQLVNEADKLRSALACSNEVWLLNRYLGYTLNPDLIRKQDATSTI 799 (909)
T ss_dssp SCCSCTTTHHHH-HHHHHHHSCHHHHHHHHHHHHHCCSHHHHHHHHHHHTTCCCHHHHHHHHHHTTCTTTSCGGGHHHHH
T ss_pred CCcCCHHHHHHH-HHHHHHhCCHHHHHHHHHHHHccCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCCchhhHHHHH
Confidence 456788877554 8999999999999999999999999999999999999999999999999999998779999999999
Q ss_pred HHHhcCCccHHHHHHHHHHhHHHH
Q psy13042 85 VMVAGNPKGLPVAWDYVKKNWDYL 108 (127)
Q Consensus 85 ~~v~~~~~g~~~~w~fl~~N~~~i 108 (127)
.++++||.|++++|+|+++||+.|
T Consensus 800 ~~v~~n~~g~~~~~~f~~~n~~~l 823 (909)
T 4fke_A 800 NSIASNVIGQPLAWDFVQSNWKKL 823 (909)
T ss_dssp HHHHHSTTHHHHHHHHHHHHCTTT
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999
No 3
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=99.85 E-value=3.9e-21 Score=163.83 Aligned_cols=99 Identities=20% Similarity=0.471 Sum_probs=93.4
Q ss_pred CCCCcccceeeeehhhhcCCHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCcHHHHHHHHHHhhcCCCCCcccHHHHHHH
Q psy13042 7 GFEAQVLKVYRRKTRMENVGEEEWKKMWAKFREESNPQEQIKMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQDYFTVIVM 86 (127)
Q Consensus 7 ~~~~~~~~v~~yC~~ir~g~~~~~~~l~~~y~~t~~~~er~~ll~AL~ct~d~~ll~~~L~~~l~~~~v~~qd~~~v~~~ 86 (127)
.+|++.+.+. ||+++ |++++|++++++|+++++++||..+|.||||++|+++++++|+++++++.|+.||...++.+
T Consensus 717 ~i~~~lr~~v-y~~~~--g~~~~~~~l~~~y~~~~~~~ek~~ll~aL~c~~~~~~l~~~L~~~~~~~~i~~qd~~~~~~~ 793 (897)
T 2xdt_A 717 SLPVDVTLAV-FAVGA--QSTEGWDFLYSKYQFSLSSTEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQILTL 793 (897)
T ss_dssp CCCHHHHHHH-HHHHT--TSHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSSSCGGGHHHHHHH
T ss_pred CCCcchhhhE-EEEec--CCHHHHHHHHHHHHccCCHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Confidence 6788877654 89998 99999999999999999999999999999999999999999999998766999999999999
Q ss_pred HhcCCccHHHHHHHHHHhHHHH
Q psy13042 87 VAGNPKGLPVAWDYVKKNWDYL 108 (127)
Q Consensus 87 v~~~~~g~~~~w~fl~~N~~~i 108 (127)
++.||.|++++|+|+++||+.|
T Consensus 794 v~~n~~g~~~~~~~~~~n~~~i 815 (897)
T 2xdt_A 794 IGRNPVGYPLAWQFLRKNWNKL 815 (897)
T ss_dssp HHTSTTTHHHHHHHHHHTHHHH
T ss_pred HHcChhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999
No 4
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A*
Probab=99.85 E-value=2.9e-21 Score=165.69 Aligned_cols=99 Identities=28% Similarity=0.531 Sum_probs=93.0
Q ss_pred CCCCcccceeeeehhhhcCCHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCcHHHHHHHHHHhhcCCCCCcccHHHHHHH
Q psy13042 7 GFEAQVLKVYRRKTRMENVGEEEWKKMWAKFREESNPQEQIKMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQDYFTVIVM 86 (127)
Q Consensus 7 ~~~~~~~~v~~yC~~ir~g~~~~~~~l~~~y~~t~~~~er~~ll~AL~ct~d~~ll~~~L~~~l~~~~v~~qd~~~v~~~ 86 (127)
.+|++.+.+. ||+++++ +++|++++++|+++++++||..+|.||||++|+++++++|+++++++.|++||...++.+
T Consensus 785 ~i~~~lr~~V-yc~~~~~--~~~~~~l~~~y~~s~~~~ek~~ll~aL~ct~d~~ll~~~L~~~l~~~~i~~qd~~~~~~~ 861 (967)
T 3se6_A 785 NIPTDVLKIV-YSVGAQT--TAGWNYLLEQYELSMSSAEQNKILYALSTSKHQEKLLKLIELGMEGKVIKTQNLAALLHA 861 (967)
T ss_dssp CCCHHHHHHH-HHHHTTS--HHHHHHHHHHHHHCSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSSSCGGGHHHHHHH
T ss_pred cCChhhhhHh-Hhhhhcc--HHHHHHHHHHHhccCCHHHHHHHHHHhcCCCCHHHHHHHHHHHhCcCcCcHhHHHHHHHH
Confidence 4788877654 8999985 899999999999999999999999999999999999999999998877899999999999
Q ss_pred HhcCCccHHHHHHHHHHhHHHH
Q psy13042 87 VAGNPKGLPVAWDYVKKNWDYL 108 (127)
Q Consensus 87 v~~~~~g~~~~w~fl~~N~~~i 108 (127)
+++||.|++++|+|+++||+.|
T Consensus 862 v~~n~~g~~~~w~f~~~nw~~i 883 (967)
T 3se6_A 862 IARRPKGQQLAWDFVRENWTHL 883 (967)
T ss_dssp HHHSTTHHHHHHHHHHHHHHHH
T ss_pred HHcChhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999
No 5
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A*
Probab=99.76 E-value=8e-19 Score=147.80 Aligned_cols=98 Identities=13% Similarity=0.239 Sum_probs=91.4
Q ss_pred CCCCcccceeeeehhhhcCCHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCcHHHHHHHHHHhhcCCCCCcccHHHHHHH
Q psy13042 7 GFEAQVLKVYRRKTRMENVGEEEWKKMWAKFREESNPQEQIKMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQDYFTVIVM 86 (127)
Q Consensus 7 ~~~~~~~~v~~yC~~ir~g~~~~~~~l~~~y~~t~~~~er~~ll~AL~ct~d~~ll~~~L~~~l~~~~v~~qd~~~v~~~ 86 (127)
.+|++.+.+. ||+++++|++ |++++++|++++++++|..++.||||++|+++++++|+++++ +.++.||...++.+
T Consensus 616 ~i~~~lr~~v-~~~~~~~g~~--~~~l~~~~~~~~~~~~~~~~l~al~~~~~~~~~~~~l~~~~~-~~i~~qd~~~~~~~ 691 (780)
T 1z5h_A 616 SAEPEMRSSI-ATAYALVTGD--LKGLLEKFRSVDRDEDRVRIISAFGKLKSNTDLSTVYGMVEK-TEIKKQDMISFFSS 691 (780)
T ss_dssp GSCHHHHHHH-HHHHHHHTCC--HHHHHHHHHSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHT-TSSCHHHHHHHHHH
T ss_pred CCCHHHHHHH-HHHHHHcCcH--HHHHHHHHhcCCCHHHHHHHHHHhccCCCHHHHHHHHHHHhc-CCCCHHHHHHHHHH
Confidence 5677777554 8899999987 999999999999999999999999999999999999999998 45999999999999
Q ss_pred HhcCCccHHHHHHHHHHhHHHH
Q psy13042 87 VAGNPKGLPVAWDYVKKNWDYL 108 (127)
Q Consensus 87 v~~~~~g~~~~w~fl~~N~~~i 108 (127)
++.||.|++++|+|+++||+.|
T Consensus 692 ~~~~~~~~~~~~~~~~~n~~~l 713 (780)
T 1z5h_A 692 ALETLPGREFIFANLDRIIRLV 713 (780)
T ss_dssp HTTSHHHHHHHHHTHHHHHHHH
T ss_pred HHhCcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999
No 6
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis}
Probab=96.61 E-value=0.0014 Score=56.02 Aligned_cols=87 Identities=8% Similarity=0.060 Sum_probs=70.3
Q ss_pred hhhhcCCHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCcHHHHHHHHHHhhcC--CCCCcccHHHHHHHHhcCCccH---
Q psy13042 20 TRMENVGEEEWKKMWAKFREESNPQEQIKMLGGLSSVKEPKLLEKFLEMAKDE--KNIRSQDYFTVIVMVAGNPKGL--- 94 (127)
Q Consensus 20 ~~ir~g~~~~~~~l~~~y~~t~~~~er~~ll~AL~ct~d~~ll~~~L~~~l~~--~~v~~qd~~~v~~~v~~~~~g~--- 94 (127)
...+.++++.++.+.++|+++.+..+|...+. |++++|+.+++++++..++ +..+++++..++.+++.||.+.
T Consensus 720 ~~~~~~~~~~~~~f~~~~~~~~~~~~k~~~~~--a~~~~~~~~~~v~~l~~~~~f~~~npn~~r~l~~~~~~n~~~fh~~ 797 (867)
T 2gtq_A 720 GNESDTRNRLLAQFADKFSDDALVMDKYFALV--GSSRRSDTLQQVRTALQHPKFSLENPNKARSLIGSFSRNVPHFHAE 797 (867)
T ss_dssp TCCSHHHHHHHHHHHHHTTTCHHHHHHHHHHH--HHCCSTTHHHHHHHHTTSTTCCTTCHHHHHHHHHHHHTCHHHHTCT
T ss_pred hcCcccHHHHHHHHHHHHcCCchHHHHHHHHH--hcCCChHHHHHHHHHhhCcCCCcCCchHHHHHHHHHhhCccccCCC
Confidence 54444667889999999999999999998888 6889999999999999998 6678888888999997777544
Q ss_pred -HHHHHHHHHhHHHH
Q psy13042 95 -PVAWDYVKKNWDYL 108 (127)
Q Consensus 95 -~~~w~fl~~N~~~i 108 (127)
..-+.|+.+-.-.|
T Consensus 798 ~g~gy~~~~~~~~~l 812 (867)
T 2gtq_A 798 DGSGYRFIADKVIEI 812 (867)
T ss_dssp TSHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHh
Confidence 34567777766555
No 7
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=68.14 E-value=19 Score=31.25 Aligned_cols=80 Identities=13% Similarity=0.229 Sum_probs=58.8
Q ss_pred hhhhcCCHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCcHHHHHHHHHHhhcCCCCCcccHHHHHHHHhc----CCccHH
Q psy13042 20 TRMENVGEEEWKKMWAKFREESNPQEQIKMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQDYFTVIVMVAG----NPKGLP 95 (127)
Q Consensus 20 ~~ir~g~~~~~~~l~~~y~~t~~~~er~~ll~AL~ct~d~~ll~~~L~~~l~~~~v~~qd~~~v~~~v~~----~~~g~~ 95 (127)
..+|.-+.++...+++++.. .+..|..++.||+.+-.+.-++.+++++.+++ +...+...++..... ++...+
T Consensus 318 ~~lR~~~~e~L~~l~~~~~~--~~~~r~~~lDal~~aGT~~a~~~i~~~i~~~~-l~~~ea~~~l~~~~~~~~Pt~e~l~ 394 (1056)
T 1lsh_A 318 AFLRNVDAGVLQSIWHKLHQ--QKDYRRWILDAVPAMATSEALLFLKRTLASEQ-LTSAEATQIVASTLSNQQATRESLS 394 (1056)
T ss_dssp HHHTTSCHHHHHHHHHHHTT--SHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHhc--cHHHHHHHHHHhHhcCCHHHHHHHHHHHHcCC-CCHHHHHHHHHHhhccCCCCHHHHH
Confidence 46777888899999998875 36678889999999999999999999988876 887776555554332 223445
Q ss_pred HHHHHHH
Q psy13042 96 VAWDYVK 102 (127)
Q Consensus 96 ~~w~fl~ 102 (127)
.+++++.
T Consensus 395 ~~~~l~~ 401 (1056)
T 1lsh_A 395 YARELLN 401 (1056)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 5555553
No 8
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=62.37 E-value=25 Score=26.76 Aligned_cols=79 Identities=14% Similarity=0.187 Sum_probs=53.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhhCCCC--cHHHHHHHHHHhhcCCCCCcccHHHHHHHHhc-CCcc---HHHHHHHHHH
Q psy13042 30 WKKMWAKFREESNPQEQIKMLGGLSSVK--EPKLLEKFLEMAKDEKNIRSQDYFTVIVMVAG-NPKG---LPVAWDYVKK 103 (127)
Q Consensus 30 ~~~l~~~y~~t~~~~er~~ll~AL~ct~--d~~ll~~~L~~~l~~~~v~~qd~~~v~~~v~~-~~~g---~~~~w~fl~~ 103 (127)
-..+.+.|.++.|..|=..++..|.+.. .+..+.+++..+++.+....+-+..++..+.. +-.. ..-.+.-+.+
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~lle 94 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVLD 94 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHh
Confidence 5678899999999999999999998874 57899999999997652333345555555543 2222 2233344556
Q ss_pred hHHHH
Q psy13042 104 NWDYL 108 (127)
Q Consensus 104 N~~~i 108 (127)
..+.+
T Consensus 95 ~l~Dl 99 (364)
T 3l6a_A 95 QCPKL 99 (364)
T ss_dssp THHHH
T ss_pred hChHh
Confidence 66655
No 9
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=55.50 E-value=44 Score=22.43 Aligned_cols=79 Identities=14% Similarity=0.156 Sum_probs=54.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhCCC-CcHHHHHHHHHHhhcCCCCCccc-HHHHHHHHhcCCccHH---HHHHHHHH
Q psy13042 29 EWKKMWAKFREESNPQEQIKMLGGLSSV-KEPKLLEKFLEMAKDEKNIRSQD-YFTVIVMVAGNPKGLP---VAWDYVKK 103 (127)
Q Consensus 29 ~~~~l~~~y~~t~~~~er~~ll~AL~ct-~d~~ll~~~L~~~l~~~~v~~qd-~~~v~~~v~~~~~g~~---~~w~fl~~ 103 (127)
....+.+.|.++.|.+|=...+..|.+. -.+..+++.+..+++.+ -+..+ +..++..+..+-...+ -.+.-+.+
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~~~~~V~~~I~~aldrk-~~ere~~s~LL~~L~~~~ls~~~i~~Gf~~lle 90 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGK-ASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLK 90 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCSGGGGHHHHHHHHHHHTSC-HHHHHHHHHHHHHHBTTTBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 4567888999999999999999999764 67788899999999765 22233 3455555543333332 33555666
Q ss_pred hHHHH
Q psy13042 104 NWDYL 108 (127)
Q Consensus 104 N~~~i 108 (127)
..+.+
T Consensus 91 ~ldDl 95 (165)
T 2rg8_A 91 DLPEL 95 (165)
T ss_dssp HHHHH
T ss_pred hChhh
Confidence 66666
No 10
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=52.14 E-value=52 Score=24.45 Aligned_cols=80 Identities=14% Similarity=0.211 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhhCCCC-cHHHHHHHHHHhhcCCCCCcccHHH-HHHHHhc---CCccHHHHHHHHH
Q psy13042 28 EEWKKMWAKFREESNPQEQIKMLGGLSSVK-EPKLLEKFLEMAKDEKNIRSQDYFT-VIVMVAG---NPKGLPVAWDYVK 102 (127)
Q Consensus 28 ~~~~~l~~~y~~t~~~~er~~ll~AL~ct~-d~~ll~~~L~~~l~~~~v~~qd~~~-v~~~v~~---~~~g~~~~w~fl~ 102 (127)
.....+.+.|.++.|..|=...+..|.+.. .+..+++.+..+++.+ -+..++.. ++..+.. ++....-.+.-+.
T Consensus 4 k~~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~-~~erE~~s~LLs~L~~~~ls~~~i~~gf~~ll 82 (307)
T 2zu6_B 4 KTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGK-ASHREMTSKLLSDLCGTVMSTTDVEKSFDKLL 82 (307)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHTBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 345778899999999999999999998764 7888999999999875 23334333 4444432 2233334466677
Q ss_pred HhHHHH
Q psy13042 103 KNWDYL 108 (127)
Q Consensus 103 ~N~~~i 108 (127)
++.+.+
T Consensus 83 ~~ldDl 88 (307)
T 2zu6_B 83 KDLPEL 88 (307)
T ss_dssp HHHHHH
T ss_pred HhhhHh
Confidence 777776
No 11
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=32.96 E-value=1.5e+02 Score=22.48 Aligned_cols=45 Identities=16% Similarity=0.181 Sum_probs=38.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhCCCC-cHHHHHHHHHHhhcCC
Q psy13042 29 EWKKMWAKFREESNPQEQIKMLGGLSSVK-EPKLLEKFLEMAKDEK 73 (127)
Q Consensus 29 ~~~~l~~~y~~t~~~~er~~ll~AL~ct~-d~~ll~~~L~~~l~~~ 73 (127)
....+.+.|.++.|..|=...+..|.+.. .+..+++.+..+++.+
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~ 101 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGK 101 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCC
Confidence 35667888999999999999999998754 7888999999999765
No 12
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=29.72 E-value=85 Score=19.16 Aligned_cols=43 Identities=5% Similarity=0.173 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhhCCCCcHHHHHHHHHHhhcCC
Q psy13042 30 WKKMWAKFREESNPQEQIKMLGGLSSVKEPKLLEKFLEMAKDEK 73 (127)
Q Consensus 30 ~~~l~~~y~~t~~~~er~~ll~AL~ct~d~~ll~~~L~~~l~~~ 73 (127)
...+.+.+. ..++.-|...+.+||...++..+..++..+-+++
T Consensus 44 ~~~L~~~L~-d~~~~vR~~A~~aL~~~~~~~a~~~L~~~L~d~~ 86 (131)
T 1te4_A 44 FEPLLESLS-NEDWRIRGAAAWIIGNFQDERAVEPLIKLLEDDS 86 (131)
T ss_dssp HHHHHHGGG-CSCHHHHHHHHHHHGGGCSHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCC
Confidence 567776655 5789999999999999999888877777665443
No 13
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=28.84 E-value=1.8e+02 Score=21.53 Aligned_cols=81 Identities=7% Similarity=0.017 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhhCCC-CcHHHHHHHHHHhhcCCCCCcccHHHHHHHHh-cCCccHH---HHHHHHH
Q psy13042 28 EEWKKMWAKFREESNPQEQIKMLGGLSSV-KEPKLLEKFLEMAKDEKNIRSQDYFTVIVMVA-GNPKGLP---VAWDYVK 102 (127)
Q Consensus 28 ~~~~~l~~~y~~t~~~~er~~ll~AL~ct-~d~~ll~~~L~~~l~~~~v~~qd~~~v~~~v~-~~~~g~~---~~w~fl~ 102 (127)
...+.+.+.|.++.|.+|=..++..|.+. ..+.++.+.+..+++.+....+-+..++..+. .+-...+ -.+.-+.
T Consensus 12 k~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~ 91 (339)
T 1ug3_A 12 KKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEIL 91 (339)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 34677889999999999999999999775 67888999999888764222233445555554 3333332 3345556
Q ss_pred HhHHHH
Q psy13042 103 KNWDYL 108 (127)
Q Consensus 103 ~N~~~i 108 (127)
+..+.+
T Consensus 92 ~~l~Dl 97 (339)
T 1ug3_A 92 ELAEDM 97 (339)
T ss_dssp HHHHHH
T ss_pred hhChHh
Confidence 666666
No 14
>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus}
Probab=27.39 E-value=26 Score=17.67 Aligned_cols=27 Identities=4% Similarity=-0.008 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHhhC
Q psy13042 27 EEEWKKMWAKFREESNPQEQIKMLGGLS 54 (127)
Q Consensus 27 ~~~~~~l~~~y~~t~~~~er~~ll~AL~ 54 (127)
+...+.+.+.|.+. |++.|+.+..|+.
T Consensus 6 ~~l~~~fk~iY~~g-ddd~kram~KS~~ 32 (35)
T 2jtt_C 6 EGLMNVLKKIYEDG-DDDMKRTINKAWV 32 (35)
T ss_dssp CSHHHHHHHHHTTC-CSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHh
Confidence 34566667777765 5677777777653
No 15
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=26.11 E-value=1.4e+02 Score=19.49 Aligned_cols=42 Identities=10% Similarity=0.007 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHHhcC----CCHHHHHHHHHhhCCCCcHHHHHHHHH
Q psy13042 26 GEEEWKKMWAKFREE----SNPQEQIKMLGGLSSVKEPKLLEKFLE 67 (127)
Q Consensus 26 ~~~~~~~l~~~y~~t----~~~~er~~ll~AL~ct~d~~ll~~~L~ 67 (127)
..++...+.++|.+. -++..+-.+.-+|-+|+++..+++-..
T Consensus 19 ~~eeL~~l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~ 64 (134)
T 3o48_A 19 YPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVK 64 (134)
T ss_dssp CHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCCHHHHHHHHH
Confidence 378899999999876 577788888889999999987766433
No 16
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=25.70 E-value=1.4e+02 Score=23.30 Aligned_cols=46 Identities=7% Similarity=0.000 Sum_probs=28.5
Q ss_pred CHHHHHHHHHhhCCCCcHHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q psy13042 42 NPQEQIKMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQDYFTVIVMV 87 (127)
Q Consensus 42 ~~~er~~ll~AL~ct~d~~ll~~~L~~~l~~~~v~~qd~~~v~~~v 87 (127)
+...=..+|.+++...+.+...++++.....+..+...++..+...
T Consensus 139 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~ 184 (501)
T 4g26_A 139 RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKV 184 (501)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 4444566778887788888888888777766633333344444333
No 17
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=25.60 E-value=1.3e+02 Score=19.00 Aligned_cols=81 Identities=7% Similarity=0.058 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhhCC-CCcHHHHHHHHHHhhcCCC-CCcccHHHHHHHHh-cCCccH---HHHHHHH
Q psy13042 28 EEWKKMWAKFREESNPQEQIKMLGGLSS-VKEPKLLEKFLEMAKDEKN-IRSQDYFTVIVMVA-GNPKGL---PVAWDYV 101 (127)
Q Consensus 28 ~~~~~l~~~y~~t~~~~er~~ll~AL~c-t~d~~ll~~~L~~~l~~~~-v~~qd~~~v~~~v~-~~~~g~---~~~w~fl 101 (127)
...+.+.+.|.++.|.+|=..++..|.+ .-.+.++++.+..+++.+. -...-+..++..+. .+-... .-.+.-+
T Consensus 8 kki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~v 87 (129)
T 2nsz_A 8 KEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 87 (129)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHH
Confidence 4467889999999999999999999975 3567788888888887541 11233555666554 333333 2335555
Q ss_pred HHhHHHH
Q psy13042 102 KKNWDYL 108 (127)
Q Consensus 102 ~~N~~~i 108 (127)
.+..+.+
T Consensus 88 ~~~l~Dl 94 (129)
T 2nsz_A 88 YNEIPDI 94 (129)
T ss_dssp HHHHHHH
T ss_pred HhhChHh
Confidence 6666666
No 18
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=25.40 E-value=1.5e+02 Score=19.48 Aligned_cols=81 Identities=7% Similarity=0.060 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhhCC-CCcHHHHHHHHHHhhcCC-CCCcccHHHHHHHHh-cCCccH---HHHHHHH
Q psy13042 28 EEWKKMWAKFREESNPQEQIKMLGGLSS-VKEPKLLEKFLEMAKDEK-NIRSQDYFTVIVMVA-GNPKGL---PVAWDYV 101 (127)
Q Consensus 28 ~~~~~l~~~y~~t~~~~er~~ll~AL~c-t~d~~ll~~~L~~~l~~~-~v~~qd~~~v~~~v~-~~~~g~---~~~w~fl 101 (127)
...+.+++.|.++.|.+|=..++..|.+ .-.+.++.+.+..+++.. .....-+..++..+. .+-... .-.+.-+
T Consensus 10 kki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~v 89 (152)
T 2ion_A 10 KEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 89 (152)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHH
Confidence 4567889999999999999999999975 356788888888888753 111223555565554 332332 2335555
Q ss_pred HHhHHHH
Q psy13042 102 KKNWDYL 108 (127)
Q Consensus 102 ~~N~~~i 108 (127)
.+..+.|
T Consensus 90 l~~ldDl 96 (152)
T 2ion_A 90 YNEIPDI 96 (152)
T ss_dssp HHHHHHH
T ss_pred HHhChHh
Confidence 6666666
No 19
>3s9x_A ASCH domain; MCSG, PSI-2, structural genomics, midwest center for structu genomics, unknown function; 1.35A {Vibrio cholerae tma 21}
Probab=22.06 E-value=89 Score=21.11 Aligned_cols=46 Identities=4% Similarity=-0.060 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHH--HhhCCCCcHHHHHHHHHHhhcCC
Q psy13042 28 EEWKKMWAKFREESNPQEQIKML--GGLSSVKEPKLLEKFLEMAKDEK 73 (127)
Q Consensus 28 ~~~~~l~~~y~~t~~~~er~~ll--~AL~ct~d~~ll~~~L~~~l~~~ 73 (127)
+..+.+|+.|.++.....+..+- .|-..-.++.+...++++++++.
T Consensus 8 ~~~~~~W~~y~~~~~~~~~~~~~~~~a~~Fgd~~~~ad~La~LVl~G~ 55 (159)
T 3s9x_A 8 ERSQLFLEQYLSSVSREVSEKYTSFSADYFCADEYNANVCADLILRGE 55 (159)
T ss_dssp HHHHHHHHHHHHTSCHHHHHTCCCEEEECSSSSHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhCchhhhccCCCceeEecCCChhhHHHHHHHHHcCC
Confidence 45788999999888777776543 35566678888999999999885
No 20
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=21.69 E-value=73 Score=20.96 Aligned_cols=37 Identities=5% Similarity=0.099 Sum_probs=15.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhhCCCCcHHHHHHHHH
Q psy13042 30 WKKMWAKFREESNPQEQIKMLGGLSSVKEPKLLEKFLE 67 (127)
Q Consensus 30 ~~~l~~~y~~t~~~~er~~ll~AL~ct~d~~ll~~~L~ 67 (127)
...+.+.+. ..++..|...+.+|+...++..+..++.
T Consensus 21 ~~~L~~~L~-~~~~~vR~~A~~~L~~~~~~~~~~~L~~ 57 (211)
T 3ltm_A 21 VEMYIKNLQ-DDSYYVRRAAAYALGKIGDERAVEPLIK 57 (211)
T ss_dssp HHHHHHHTT-CSSHHHHHHHHHHHHHHCCGGGHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 344444333 3344444444444444444333333333
Done!