RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13042
(127 letters)
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A
{Homo sapiens}
Length = 419
Score = 104 bits (261), Expect = 7e-28
Identities = 19/83 (22%), Positives = 46/83 (55%)
Query: 26 GEEEWKKMWAKFREESNPQEQIKMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQDYFTVIV 85
E W +++K++ + E+ ++ L + + L+ L+ + I++Q++ ++
Sbjct: 250 STEGWDFLYSKYQFSLSSTEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQILT 309
Query: 86 MVAGNPKGLPVAWDYVKKNWDYL 108
++ NP G P+AW +++KNW+ L
Sbjct: 310 LIGRNPVGYPLAWQFLRKNWNKL 332
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic
domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG
MES MAN; 3.08A {Homo sapiens}
Length = 967
Score = 103 bits (258), Expect = 5e-27
Identities = 25/83 (30%), Positives = 46/83 (55%)
Query: 26 GEEEWKKMWAKFREESNPQEQIKMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQDYFTVIV 85
W + ++ + EQ K+L LS+ K + L K +E+ + K I++Q+ ++
Sbjct: 801 TTAGWNYLLEQYELSMSSAEQNKILYALSTSKHQEKLLKLIELGMEGKVIKTQNLAALLH 860
Query: 86 MVAGNPKGLPVAWDYVKKNWDYL 108
+A PKG +AWD+V++NW +L
Sbjct: 861 AIARRPKGQQLAWDFVRENWTHL 883
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein,
metal-binding, metalloprotease, protease, hydrolase,
adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB:
2yd0_A* 3qnf_A* 3mdj_A*
Length = 897
Score = 101 bits (254), Expect = 2e-26
Identities = 19/83 (22%), Positives = 46/83 (55%)
Query: 26 GEEEWKKMWAKFREESNPQEQIKMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQDYFTVIV 85
E W +++K++ + E+ ++ L + + L+ L+ + I++Q++ ++
Sbjct: 733 STEGWDFLYSKYQFSLSSTEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQILT 792
Query: 86 MVAGNPKGLPVAWDYVKKNWDYL 108
++ NP G P+AW +++KNW+ L
Sbjct: 793 LIGRNPVGYPLAWQFLRKNWNKL 815
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase,
gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma
acidophilum} PDB: 1z1w_A 3q7j_A*
Length = 780
Score = 94.0 bits (234), Expect = 9e-24
Identities = 11/81 (13%), Positives = 29/81 (35%), Gaps = 1/81 (1%)
Query: 28 EEWKKMWAKFREESNPQEQIKMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQDYFTVIVMV 87
+ K + KFR +++++++ +K L M + + I+ QD +
Sbjct: 634 GDLKGLLEKFRSVDRDEDRVRIISAFGKLKSNTDLSTVYGMVEKTE-IKKQDMISFFSSA 692
Query: 88 AGNPKGLPVAWDYVKKNWDYL 108
G + + + +
Sbjct: 693 LETLPGREFIFANLDRIIRLV 713
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 2e-06
Identities = 21/124 (16%), Positives = 42/124 (33%), Gaps = 21/124 (16%)
Query: 1 MKIRGLG---FEAQVLKVYRRKTRMENVGEEEWKKMWAKFREESNPQEQIKMLGGLSSVK 57
+ G G V Y+ + +M+ K W + ++P+ ++ML L
Sbjct: 158 VL--GSGKTWVALDVCLSYKVQCKMDF------KIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 58 EPKLLEKFLEMAKDEKNIRS-QDYFTVIVMVAGNPKGLPV---AWDYVKKNWDYLG---R 110
+P + + + I S Q ++ L V + K W+ +
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWNAFNLSCK 267
Query: 111 -LVT 113
L+T
Sbjct: 268 ILLT 271
Score = 32.9 bits (74), Expect = 0.020
Identities = 16/114 (14%), Positives = 35/114 (30%), Gaps = 17/114 (14%)
Query: 3 IRGLGFEAQVLKVYRRKTRMENVGEEEWKKMWAKFREESNPQEQIKMLGGLSSVKEPKLL 62
++L R K + + + L+ + LL
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHI-----------SLDHHSMTLTPDEVKSLL 307
Query: 63 EKFLEMAKDEKNIRSQDYFT---VIVMVAGNPKGLPVAWDYVKK-NWDYLGRLV 112
K+L+ + + + T + ++A + + WD K N D L ++
Sbjct: 308 LKYLDCRPQD--LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.13
Identities = 13/99 (13%), Positives = 32/99 (32%), Gaps = 28/99 (28%)
Query: 6 LGFEAQVLKVYRRKTRMENVGEEEWKKMWAKFREES-NPQEQIK--MLG--GLSSVKEPK 60
+G + Y + + E+S E + ML L+ +
Sbjct: 306 IGVRCY--EAYPNTS------------LPPSILEDSLENNEGVPSPMLSISNLT----QE 347
Query: 61 LLEKFLEMAKDEKNIRSQDYFTVI-----VMVAGNPKGL 94
++ ++ Q +++ ++V+G P+ L
Sbjct: 348 QVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSL 386
Score = 28.1 bits (62), Expect = 1.0
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 15/58 (25%)
Query: 44 QEQIKMLGGLSSVKEPKLLEKFLEMAKD-----EKNIRSQDYFTVIVMVAGNPKGLPV 96
QEQ M G+ L + + A+D + + + F+++ +V NP L +
Sbjct: 1627 QEQ-GM--GMD------LYKTS-KAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTI 1674
>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus
stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n*
1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M
Length = 122
Score = 26.5 bits (58), Expect = 1.8
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 68 MAKDEKNIRSQDYFTVIVMVAGNPKGL----PVAWDYVKKNW 105
D IR + VI+ +P+G PVA + K++
Sbjct: 70 RRPDGSYIRFDENACVIIRDDKSPRGTRIFGPVARELRDKDF 111
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase, nucleotide-binding, protein
biosynthesis, ligase/RNA complex; HET: ANP; 2.00A
{Pyrococcus horikoshii} PDB: 2zuf_A
Length = 629
Score = 27.0 bits (60), Expect = 1.9
Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 10/66 (15%)
Query: 21 RMENVGEEEWKKMWAKFREESNPQEQIKMLG-------GLSSVKEPKLLEKFLEMAKDEK 73
++E+ GE +K+ + LG S + KL E LE+ +
Sbjct: 234 KLES-GELYGRKLAEEVVRAQ--MVTTYKLGVKYDLLVWESDIVRRKLFEIALELLSKNE 290
Query: 74 NIRSQD 79
N
Sbjct: 291 NFYIPS 296
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET:
PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A
{Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1
d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Length = 607
Score = 25.7 bits (57), Expect = 5.7
Identities = 12/21 (57%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Query: 21 RMENVGEEEWKKMWAKFREES 41
RME+ G+EE K+W +FRE S
Sbjct: 254 RMED-GDEEALKIWKRFREFS 273
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 25.1 bits (54), Expect = 6.9
Identities = 12/75 (16%), Positives = 32/75 (42%), Gaps = 16/75 (21%)
Query: 9 EAQVLKVYR--RKTRMENVGE------EEWKKMWAKFREE--SNPQEQIKMLGGLSSVKE 58
E + ++ +R ++ R++ + +EW++ K EE EQ++ +
Sbjct: 83 EPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE-----KNKIN 137
Query: 59 PKLLEK-FLEMAKDE 72
++ +K F + +
Sbjct: 138 NRIADKAFYQQPDAD 152
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain
interacting protein, DCAF14 DDB1 and CUL4 associated
factor 14, SGC; 2.25A {Homo sapiens}
Length = 135
Score = 24.7 bits (54), Expect = 7.7
Identities = 4/33 (12%), Positives = 13/33 (39%)
Query: 14 KVYRRKTRMENVGEEEWKKMWAKFREESNPQEQ 46
++Y R+ EE + + ++ ++
Sbjct: 103 RIYSMSLRLSAFFEEHISSVLSDYKSALRFHKR 135
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.402
Gapped
Lambda K H
0.267 0.0783 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,990,784
Number of extensions: 107312
Number of successful extensions: 250
Number of sequences better than 10.0: 1
Number of HSP's gapped: 245
Number of HSP's successfully gapped: 30
Length of query: 127
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 44
Effective length of database: 4,384,350
Effective search space: 192911400
Effective search space used: 192911400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.3 bits)