RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13042
         (127 letters)



>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 202

 Score = 25.6 bits (55), Expect = 1.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 60  KLLEKFLEMAKDEKNIRSQ 78
           +L++ FL M K+ K   S 
Sbjct: 183 RLMQYFLNMVKEAKMASSL 201


>d1di6a_ c.57.1.1 (A:) MogA {Escherichia coli [TaxId: 562]}
          Length = 190

 Score = 24.6 bits (53), Expect = 3.5
 Identities = 6/25 (24%), Positives = 11/25 (44%)

Query: 82  TVIVMVAGNPKGLPVAWDYVKKNWD 106
            +I+ + G PK +    + VK    
Sbjct: 126 ALILNLPGQPKSIKETLEGVKDAEG 150


>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of
          phosphatidylinositol transfer protein sec14p {Baker's
          yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 93

 Score = 23.6 bits (51), Expect = 4.5
 Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 28 EEWKKMWAKFREESNPQEQIKMLGGLSSVKEPKLLEKFLEMAKDEKNIRSQDYFTVI 84
          ++ K+    + +   P       G L S +E   L +  ++ +D   I   D  T++
Sbjct: 1  QQEKEFLESYPQNCPPDALPGTPGNLDSAQEKA-LAELRKLLEDAGFIERLDDSTLL 56


>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase,
           N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}
          Length = 314

 Score = 24.0 bits (51), Expect = 6.8
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 51  GGLSSVKEPKLLEKFLEMAKDEKNI 75
           G L  + E  LLEK+L +A++E NI
Sbjct: 244 GRLRQMGEMALLEKYLSLAENETNI 268


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0716    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 496,325
Number of extensions: 21733
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 19
Length of query: 127
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 52
Effective length of database: 1,377,846
Effective search space: 71647992
Effective search space used: 71647992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.3 bits)