Query psy13046
Match_columns 365
No_of_seqs 331 out of 3172
Neff 9.6
Searched_HMMs 29240
Date Fri Aug 16 18:04:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13046.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13046hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ni2_A 4-coumarate:COA ligase; 100.0 2E-35 7E-40 290.0 14.7 183 181-365 317-504 (536)
2 4fuq_A Malonyl COA synthetase; 100.0 5.5E-35 1.9E-39 284.7 14.1 181 182-365 288-469 (503)
3 2d1s_A Luciferase, luciferin 4 100.0 1.1E-34 3.7E-39 285.5 12.3 181 181-365 329-511 (548)
4 3nyq_A Malonyl-COA ligase; A/B 100.0 2.1E-34 7.3E-39 280.7 13.3 181 183-365 293-477 (505)
5 1v25_A Long-chain-fatty-acid-C 100.0 9.1E-35 3.1E-39 285.7 9.4 178 186-365 316-505 (541)
6 3g7s_A Long-chain-fatty-acid-- 100.0 6.6E-34 2.3E-38 280.1 14.9 176 187-365 328-511 (549)
7 1mdb_A 2,3-dihydroxybenzoate-A 100.0 5.7E-34 2E-38 279.9 13.7 177 185-365 321-500 (539)
8 3etc_A AMP-binding protein; ad 100.0 1.3E-33 4.4E-38 279.5 13.9 178 183-365 362-548 (580)
9 3rix_A Luciferase, luciferin 4 100.0 9.1E-35 3.1E-39 286.3 4.7 180 183-365 329-509 (550)
10 3r44_A Fatty acyl COA syntheta 100.0 2.4E-33 8.3E-38 274.1 13.9 173 187-365 308-482 (517)
11 4gr5_A Non-ribosomal peptide s 100.0 2.8E-34 9.6E-39 283.9 6.4 183 180-365 345-540 (570)
12 1amu_A GRSA, gramicidin synthe 100.0 1.2E-32 4E-37 271.8 15.2 173 188-365 317-498 (563)
13 1pg4_A Acetyl-COA synthetase; 100.0 1.2E-32 4.2E-37 276.1 13.4 175 188-365 407-590 (652)
14 1t5h_X 4-chlorobenzoyl COA lig 100.0 1.5E-32 5.1E-37 267.7 13.6 174 184-365 294-473 (504)
15 3c5e_A Acyl-coenzyme A synthet 100.0 5.1E-33 1.8E-37 274.7 10.0 175 186-365 346-531 (570)
16 3o83_A Peptide arylation enzym 100.0 8.2E-34 2.8E-38 279.0 4.3 177 185-365 330-509 (544)
17 3l8c_A D-alanine--poly(phospho 100.0 4.9E-33 1.7E-37 272.2 9.3 184 179-365 282-481 (521)
18 3e7w_A D-alanine--poly(phospho 100.0 2.9E-32 9.8E-37 266.1 14.3 183 179-365 278-472 (511)
19 3ivr_A Putative long-chain-fat 100.0 1.4E-33 4.9E-38 275.2 4.3 179 181-365 289-470 (509)
20 3fce_A D-alanine--poly(phospho 100.0 2.3E-32 7.9E-37 266.9 12.4 182 180-365 280-473 (512)
21 3tsy_A Fusion protein 4-coumar 100.0 2.9E-33 1E-37 292.8 6.0 184 180-365 363-551 (979)
22 3rg2_A Enterobactin synthase c 100.0 7.9E-32 2.7E-36 268.8 13.4 177 184-365 324-503 (617)
23 3ipl_A 2-succinylbenzoate--COA 100.0 1.6E-31 5.5E-36 260.2 14.3 168 186-365 297-466 (501)
24 4dg8_A PA1221; ANL superfamily 100.0 6.1E-32 2.1E-36 269.2 10.3 176 181-365 296-482 (620)
25 3ite_A SIDN siderophore synthe 100.0 4.2E-32 1.5E-36 267.9 8.5 182 181-365 313-511 (562)
26 1ry2_A Acetyl-coenzyme A synth 100.0 1.6E-31 5.5E-36 268.2 11.9 176 188-365 413-606 (663)
27 2v7b_A Benzoate-coenzyme A lig 100.0 1.7E-31 5.7E-36 261.8 11.1 174 186-365 324-501 (529)
28 2vsq_A Surfactin synthetase su 100.0 8.6E-31 2.9E-35 280.9 14.9 179 182-365 741-929 (1304)
29 3kxw_A Saframycin MX1 syntheta 99.9 2.6E-29 8.7E-34 249.4 3.8 172 186-363 319-530 (590)
30 3gqw_A Fatty acid AMP ligase; 99.9 1E-28 3.6E-33 244.3 6.3 169 187-362 330-526 (576)
31 3qov_A Phenylacetate-coenzyme 99.9 1E-24 3.6E-29 208.4 10.7 159 186-364 230-403 (436)
32 4gs5_A Acyl-COA synthetase (AM 99.9 1.5E-24 5.1E-29 201.9 7.5 148 186-365 171-323 (358)
33 2y4o_A Phenylacetate-coenzyme 99.9 3.8E-24 1.3E-28 204.9 8.5 160 187-364 237-409 (443)
34 2y27_A Phenylacetate-coenzyme 99.9 2.2E-24 7.4E-29 206.3 6.4 160 187-364 235-405 (437)
35 1t5h_X 4-chlorobenzoyl COA lig 99.9 1.5E-21 5.2E-26 189.9 16.1 143 11-158 343-493 (504)
36 4fuq_A Malonyl COA synthetase; 99.9 1.5E-21 5E-26 190.0 14.7 143 11-158 340-489 (503)
37 3ni2_A 4-coumarate:COA ligase; 99.9 2.5E-21 8.4E-26 189.8 16.2 143 11-158 375-524 (536)
38 1mdb_A 2,3-dihydroxybenzoate-A 99.9 5.5E-21 1.9E-25 187.5 15.3 142 11-158 371-520 (539)
39 2d1s_A Luciferase, luciferin 4 99.8 6.1E-21 2.1E-25 187.5 13.3 144 11-158 382-532 (548)
40 3etc_A AMP-binding protein; ad 99.8 1.4E-20 4.9E-25 186.0 15.6 143 11-158 412-568 (580)
41 3r44_A Fatty acyl COA syntheta 99.8 1.1E-20 3.7E-25 184.4 13.7 135 18-158 362-502 (517)
42 3g7s_A Long-chain-fatty-acid-- 99.8 3.4E-21 1.2E-25 189.4 9.9 143 11-158 376-531 (549)
43 3nyq_A Malonyl-COA ligase; A/B 99.8 3.6E-20 1.2E-24 180.2 16.0 138 16-158 351-497 (505)
44 1amu_A GRSA, gramicidin synthe 99.8 4.4E-20 1.5E-24 181.9 16.0 141 11-158 365-518 (563)
45 1pg4_A Acetyl-COA synthetase; 99.8 3.6E-20 1.2E-24 185.6 14.9 143 11-158 454-610 (652)
46 3c5e_A Acyl-coenzyme A synthet 99.8 3.9E-20 1.3E-24 182.6 12.9 143 11-158 393-551 (570)
47 3ipl_A 2-succinylbenzoate--COA 99.8 9.4E-20 3.2E-24 177.1 13.8 137 15-158 345-486 (501)
48 3ivr_A Putative long-chain-fat 99.8 5.7E-21 2E-25 186.1 4.7 143 11-158 340-490 (509)
49 3e7w_A D-alanine--poly(phospho 99.8 1.6E-19 5.5E-24 175.9 14.8 142 11-158 337-492 (511)
50 3fce_A D-alanine--poly(phospho 99.8 9.2E-20 3.1E-24 177.7 12.6 142 11-158 338-493 (512)
51 3rg2_A Enterobactin synthase c 99.8 2.9E-19 1E-23 178.0 16.3 141 11-158 375-523 (617)
52 4gr5_A Non-ribosomal peptide s 99.8 7.5E-21 2.5E-25 187.8 4.2 143 11-158 402-560 (570)
53 3o83_A Peptide arylation enzym 99.8 1.2E-20 4.1E-25 185.3 5.4 142 11-158 380-529 (544)
54 3rix_A Luciferase, luciferin 4 99.8 8.9E-21 3E-25 186.4 4.4 144 11-158 380-530 (550)
55 3l8c_A D-alanine--poly(phospho 99.8 1.2E-19 4.2E-24 177.1 10.4 143 11-158 341-501 (521)
56 1v25_A Long-chain-fatty-acid-C 99.8 4.2E-20 1.4E-24 181.3 7.0 136 17-158 382-525 (541)
57 2v7b_A Benzoate-coenzyme A lig 99.8 3.3E-19 1.1E-23 174.4 12.5 142 11-158 371-521 (529)
58 1ry2_A Acetyl-coenzyme A synth 99.8 2.6E-19 8.8E-24 179.6 9.2 142 12-158 463-626 (663)
59 3tsy_A Fusion protein 4-coumar 99.8 1.1E-19 3.6E-24 190.3 5.4 143 11-158 422-571 (979)
60 3t5a_A Long-chain-fatty-acid-- 99.7 2.2E-19 7.4E-24 173.5 2.5 104 186-293 341-480 (480)
61 3ite_A SIDN siderophore synthe 99.7 5.9E-19 2E-23 173.9 4.8 143 11-158 367-532 (562)
62 2vsq_A Surfactin synthetase su 99.7 1.4E-17 4.9E-22 178.7 15.9 141 11-158 796-949 (1304)
63 4dg8_A PA1221; ANL superfamily 99.7 8.3E-18 2.8E-22 167.3 12.1 134 13-158 355-502 (620)
64 3gqw_A Fatty acid AMP ligase; 99.7 1.2E-17 4.3E-22 164.8 10.7 140 11-158 404-552 (576)
65 3kxw_A Saframycin MX1 syntheta 99.7 2.6E-18 8.9E-23 170.2 4.8 143 11-158 392-556 (590)
66 4gs5_A Acyl-COA synthetase (AM 99.7 2.9E-17 1E-21 152.6 9.5 114 38-158 226-343 (358)
67 3qov_A Phenylacetate-coenzyme 99.7 2.7E-16 9.2E-21 150.0 12.5 136 11-158 276-426 (436)
68 2y4o_A Phenylacetate-coenzyme 99.7 2.1E-16 7.2E-21 151.1 9.9 139 10-158 282-433 (443)
69 2y27_A Phenylacetate-coenzyme 99.6 3.7E-16 1.3E-20 149.1 9.0 138 10-158 280-428 (437)
70 3gxs_A Phenylacetate-coenzyme 99.3 8.1E-12 2.8E-16 95.1 9.2 93 60-158 1-99 (109)
71 3lax_A Phenylacetate-coenzyme 99.3 1.2E-11 4.3E-16 94.1 9.8 96 60-158 1-99 (109)
72 3lax_A Phenylacetate-coenzyme 99.3 9E-12 3.1E-16 94.9 8.8 60 292-351 1-60 (109)
73 3gxs_A Phenylacetate-coenzyme 99.3 1E-11 3.5E-16 94.5 7.7 70 292-362 1-74 (109)
74 3hgu_A EHPF; phenazine, antibi 98.4 2.4E-08 8.1E-13 92.7 0.2 105 183-303 254-368 (369)
75 3t5a_A Long-chain-fatty-acid-- 98.3 2.1E-07 7.1E-12 89.3 3.4 50 11-61 413-480 (480)
76 4b2g_A GH3-1 auxin conjugating 97.8 0.00015 5E-09 70.6 12.6 43 274-316 412-458 (609)
77 4eql_A 4-substituted benzoates 97.6 0.00042 1.5E-08 67.2 11.4 44 274-317 400-447 (581)
78 4epl_A Jasmonic acid-amido syn 97.4 0.002 6.9E-08 62.4 13.7 71 274-345 407-489 (581)
79 4eql_A 4-substituted benzoates 96.9 0.00063 2.1E-08 66.0 4.4 63 13-85 381-447 (581)
80 4b2g_A GH3-1 auxin conjugating 96.8 0.0006 2.1E-08 66.3 3.3 63 12-84 392-458 (609)
81 4epl_A Jasmonic acid-amido syn 96.4 0.0014 4.8E-08 63.5 3.1 63 12-84 387-453 (581)
82 2cvi_A 75AA long hypothetical 69.5 17 0.00057 24.7 6.6 47 307-363 15-61 (83)
83 3hgu_A EHPF; phenazine, antibi 64.0 3.6 0.00012 37.0 2.8 37 10-53 305-341 (369)
84 2zbc_A 83AA long hypothetical 58.8 27 0.00091 23.4 6.0 47 307-363 15-61 (83)
85 2djw_A Probable transcriptiona 52.4 29 0.00098 24.0 5.3 47 307-363 15-61 (92)
86 2zzt_A Putative uncharacterize 34.6 1.2E+02 0.0042 21.5 6.7 57 307-363 12-73 (107)
87 2cg4_A Regulatory protein ASNC 31.7 1.6E+02 0.0055 22.1 7.2 47 307-363 82-128 (152)
88 4a4j_A Pacszia, cation-transpo 23.4 1.4E+02 0.0047 18.4 5.9 46 306-360 16-61 (69)
89 2dbb_A Putative HTH-type trans 23.3 2.1E+02 0.0073 21.3 6.5 44 308-361 83-127 (151)
90 3dxs_X Copper-transporting ATP 22.1 1.5E+02 0.0052 18.5 6.2 47 306-360 16-62 (74)
91 3byp_A CZRB protein; membrane 20.8 1.4E+02 0.0047 20.3 4.5 58 306-363 11-75 (94)
No 1
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=2e-35 Score=290.02 Aligned_cols=183 Identities=17% Similarity=0.164 Sum_probs=160.9
Q ss_pred hhccCCCCccccccCCcccccccccccc----cccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccc
Q psy13046 181 IHTVWPGQSYFPCCCGKLRIHPFLEVVQ----SFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMK 255 (365)
Q Consensus 181 ~~~~~~~~~~~~~~yG~tE~~~~~~~~~----~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~ 255 (365)
+...+++..+.+. ||+||++++++... .......+++|+|+|+++++|+|++.+...+ .+..||+ ++||+++.
T Consensus 317 ~~~~~~~~~l~~~-YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~-~g~~GEl~v~g~~v~~ 394 (536)
T 3ni2_A 317 VRAKFPQARLGQG-YGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLP-RNQPGEICIRGDQIMK 394 (536)
T ss_dssp HHHHCTTSEEEEE-EECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCC-TTCCEEEEEESTTSCS
T ss_pred HHHHCCCCCcccc-ccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCC-CCCccEEEEeCcccch
Confidence 4456778999999 99999987654321 1122456789999999999999966444333 3578998 99999999
Q ss_pred cccCCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCc
Q psy13046 256 SKRGLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 335 (365)
Q Consensus 256 gY~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~ 335 (365)
|||++|+.|++.|+.+|||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|.+||+|.+++|++.+++..|+
T Consensus 395 GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~ 474 (536)
T 3ni2_A 395 GYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGE 474 (536)
T ss_dssp EETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEE
T ss_pred hhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCc
Confidence 99999999999998899999999999999999999999999999999999999999999999999999999999998999
Q ss_pred EEEEEEEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046 336 EVGISIKLKENAKLNADDIRTFCKGKVSKF 365 (365)
Q Consensus 336 ~~~a~v~~~~~~~~~~~~l~~~~~~~l~~y 365 (365)
.++|+|+.+++...+.++|+++|+++|+.|
T Consensus 475 ~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~ 504 (536)
T 3ni2_A 475 VPVAFVVKSEKSQATEDEIKQYISKQVIFY 504 (536)
T ss_dssp EEEEEEEECTTCCCCHHHHHHHHHTTSCGG
T ss_pred eeEEEEEecCCCCCCHHHHHHHHHHhccCC
Confidence 999999998887888999999999999876
No 2
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=5.5e-35 Score=284.73 Aligned_cols=181 Identities=23% Similarity=0.244 Sum_probs=159.0
Q ss_pred hccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCC
Q psy13046 182 HTVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGL 260 (365)
Q Consensus 182 ~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~ 260 (365)
+....+..+.+. ||+||++..+..... .....+++|+|+|+++++|+|++.+...+ .+..||+ ++||++++|||++
T Consensus 288 ~~~~~~~~~~~~-YG~TE~~~~~~~~~~-~~~~~~~~G~p~~~~~~~i~d~~~g~~~~-~g~~GEl~v~g~~v~~GY~~~ 364 (503)
T 4fuq_A 288 WSAKTGHAVLER-YGMTETNMNTSNPYD-GDRVPGAVGPALPGVSARVTDPETGKELP-RGDIGMIEVKGPNVFKGYWRM 364 (503)
T ss_dssp HHHHHSCCEEEC-CEETTTEECBCCCSS-SCCCTTEEEEBCTTCEEEEECTTTCCBCC-TTCCEEEEEESTTSCCCBTTC
T ss_pred HHHHhCCCccce-EcccccCcccccCCC-CCCcCCccccCCCCeEEEEEECCCCCCCc-CCCceEEEEECCchhhhhcCC
Confidence 334446778888 999999876543322 23556789999999999999955443333 3578998 9999999999999
Q ss_pred CcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEE
Q psy13046 261 PARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340 (365)
Q Consensus 261 ~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~ 340 (365)
|+.|+++|..+|||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|.+||+|.+++|++.+++..++.++|+
T Consensus 365 ~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~ 444 (503)
T 4fuq_A 365 PEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAV 444 (503)
T ss_dssp HHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEE
T ss_pred hhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEE
Confidence 99999999889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046 341 IKLKENAKLNADDIRTFCKGKVSKF 365 (365)
Q Consensus 341 v~~~~~~~~~~~~l~~~~~~~l~~y 365 (365)
|+++++...+.++++++|+++|++|
T Consensus 445 v~~~~~~~~~~~~l~~~l~~~L~~~ 469 (503)
T 4fuq_A 445 VVRDKGATIDEAQVLHGLDGQLAKF 469 (503)
T ss_dssp EEECTTCCCCHHHHHHHHBTTBCGG
T ss_pred EEeCCCCCCCHHHHHHHHHhhcccC
Confidence 9999888889999999999999976
No 3
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=1.1e-34 Score=285.53 Aligned_cols=181 Identities=17% Similarity=0.151 Sum_probs=159.2
Q ss_pred hhccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEc-ccceeccCCceeeEE-eecCccccccc
Q psy13046 181 IHTVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLY-IVNSVLYNFKWINQV-SSQTMAMKSKR 258 (365)
Q Consensus 181 ~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~-~~~~~~~~~~~~gei-~~g~~~~~gY~ 258 (365)
+...+++..+.+. ||+||++..++..... ....+++|+|+|+++++|+|+ ++++++. +..||+ ++||++++|||
T Consensus 329 ~~~~~~~~~i~~~-YG~TE~~~~~~~~~~~-~~~~~~~G~~~~~~~~~i~d~~~~~~~~~--g~~GEl~v~g~~v~~GY~ 404 (548)
T 2d1s_A 329 VARRFNLPGVRQG-YGLTETTSAIIITPEG-DDKPGASGKVVPLFKAKVIDLDTKKSLGP--NRRGEVCVKGPMLMKGYV 404 (548)
T ss_dssp HHHHTTCSCCEEE-EECGGGSSEEEECCTT-CCCTTCCBEECTTCEEEEECTTTCCBCCT--TCCEEEEEESTTSCSEET
T ss_pred HHHHcCCCceeec-cccccccceeeecCcc-cCCCCCCCccCCCceEEEEeCCcCccCCC--CCCeEEEECCHHHhhhhc
Confidence 4445677888888 9999998766543222 245678999999999999995 4444433 578998 99999999999
Q ss_pred CCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEE
Q psy13046 259 GLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVG 338 (365)
Q Consensus 259 ~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~ 338 (365)
++|+.|++.|+.+|||+|||+|++|+||+++|+||+||+||++|++|+|.|||++|.+||+|.+|+|++.+++..|+.++
T Consensus 405 ~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~ 484 (548)
T 2d1s_A 405 NNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPG 484 (548)
T ss_dssp TCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEE
T ss_pred CChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeE
Confidence 99999999997799999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred EEEEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046 339 ISIKLKENAKLNADDIRTFCKGKVSKF 365 (365)
Q Consensus 339 a~v~~~~~~~~~~~~l~~~~~~~l~~y 365 (365)
|+|+++++...+.++|+++|+++|++|
T Consensus 485 a~vv~~~~~~~~~~~l~~~~~~~l~~~ 511 (548)
T 2d1s_A 485 AVVVLESGKNMTEKEVMDYVASQVSNA 511 (548)
T ss_dssp EEEEECTTCCCCHHHHHHHHHTTSCGG
T ss_pred EEEEEcCCCCCCHHHHHHHHHHhcccc
Confidence 999998877788899999999999875
No 4
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=2.1e-34 Score=280.69 Aligned_cols=181 Identities=21% Similarity=0.163 Sum_probs=155.1
Q ss_pred ccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceecc-CCceeeEE-eecCcccccccCC
Q psy13046 183 TVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLY-NFKWINQV-SSQTMAMKSKRGL 260 (365)
Q Consensus 183 ~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~-~~~~~gei-~~g~~~~~gY~~~ 260 (365)
....+..+.+. ||+||++..++..... .....++|+|+|+++++|+|+++.+++. +.+..||+ ++|++++.|||++
T Consensus 293 ~~~~~~~~~~~-YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~ 370 (505)
T 3nyq_A 293 AAATGRRVIER-YGMTETLMNTSVRADG-EPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNR 370 (505)
T ss_dssp HHHHSCCCEEE-EEETTTEEEEECCTTS-CCCTTCCCEECTTCEEEEC-----CCCCCCSCCCEEEEEESTTSCCEETTC
T ss_pred HHhcCCeeecc-cchhhcccccccCCCC-CCCCCCcccCCCCCEEEEECCCCCCcccCCCCceEEEEEecCchhhhhCCC
Confidence 34457788888 9999998765543332 2456789999999999999988877764 44578998 9999999999999
Q ss_pred CcccccccCCCCeeecCceEEEccCCcEEEEeec-CceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEE
Q psy13046 261 PARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRI-KDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGI 339 (365)
Q Consensus 261 ~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~-~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a 339 (365)
|+.|+++|..+|||+|||+|++|+||+++|+||+ ||+||++|+||+|.|||++|.+||+|.+++|++.+++..++.++|
T Consensus 371 ~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a 450 (505)
T 3nyq_A 371 PDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVA 450 (505)
T ss_dssp HHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEE
T ss_pred hhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEE
Confidence 9999999988999999999999999999999998 599999999999999999999999999999999999999999999
Q ss_pred EEEEcC-CCCCCHHHHHHHHHcccCCC
Q psy13046 340 SIKLKE-NAKLNADDIRTFCKGKVSKF 365 (365)
Q Consensus 340 ~v~~~~-~~~~~~~~l~~~~~~~l~~y 365 (365)
+|++.+ +...+.++|+++|+++|++|
T Consensus 451 ~vv~~~~~~~~~~~~l~~~l~~~L~~~ 477 (505)
T 3nyq_A 451 WIVPADPAAPPALGTLADHVAARLAPH 477 (505)
T ss_dssp EEEESSTTSCCCHHHHHHHHHHHTCGG
T ss_pred EEEECCCCCCCCHHHHHHHHHhhCCCC
Confidence 999876 44567899999999999976
No 5
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=9.1e-35 Score=285.66 Aligned_cols=178 Identities=17% Similarity=0.121 Sum_probs=131.6
Q ss_pred CCCccccccCCcccccccccccccc----------cccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCccc
Q psy13046 186 PGQSYFPCCCGKLRIHPFLEVVQSF----------ECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAM 254 (365)
Q Consensus 186 ~~~~~~~~~yG~tE~~~~~~~~~~~----------~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~ 254 (365)
.+..+.+. ||+||++++++..... ......++|+|+|+++++|+|+++++++.+.+..||+ ++||+++
T Consensus 316 ~g~~~~~~-YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~~~~~~GEl~v~g~~v~ 394 (541)
T 1v25_A 316 MGVEVRQG-YGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWIT 394 (541)
T ss_dssp TTCEEEEE-EECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCCCEEEEEESTTSB
T ss_pred hCCceeec-ccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEECCCCCCCCCCCCcceEEEEeCcchh
Confidence 47788888 9999998766533211 0023578999999999999998887776554568998 9999999
Q ss_pred ccccCCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCC
Q psy13046 255 KSKRGLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMG 334 (365)
Q Consensus 255 ~gY~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g 334 (365)
.|||++|+.|+++|..+|||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|.+||+|.+|+|++.+++..+
T Consensus 395 ~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~ 474 (541)
T 1v25_A 395 GGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQ 474 (541)
T ss_dssp SSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSS
T ss_pred ccccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcC
Confidence 99999999999999889999999999999999999999999999999999999999999999999999999999999889
Q ss_pred cEEEEEEEEcCCCCCCHHHHHHHHHc-ccCCC
Q psy13046 335 EEVGISIKLKENAKLNADDIRTFCKG-KVSKF 365 (365)
Q Consensus 335 ~~~~a~v~~~~~~~~~~~~l~~~~~~-~l~~y 365 (365)
+.++|+|+++ +...+.++++++|++ +|++|
T Consensus 475 ~~~~a~vv~~-~~~~~~~~l~~~~~~~~L~~~ 505 (541)
T 1v25_A 475 ERPLAVVVPR-GEKPTPEELNEHLLKAGFAKW 505 (541)
T ss_dssp EEEEECC--------------------CCCTT
T ss_pred ceEEEEEEEC-CCCCCHHHHHHHHHhccCccc
Confidence 9999999976 445567899999999 89876
No 6
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=6.6e-34 Score=280.06 Aligned_cols=176 Identities=18% Similarity=0.179 Sum_probs=136.2
Q ss_pred CCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEc-ccceeccCCceeeEE-eecCcccccccCCCccc
Q psy13046 187 GQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLY-IVNSVLYNFKWINQV-SSQTMAMKSKRGLPARV 264 (365)
Q Consensus 187 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~-~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~~~ 264 (365)
...+.+. ||+||++.+++...........++|+|+|+++++|+|+ ++.+++. +..||+ ++||++++|||++|+.|
T Consensus 328 ~~~~~~~-YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~--g~~GEl~v~g~~v~~GY~~~~~~t 404 (549)
T 3g7s_A 328 RLRHNQI-WGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGRELGV--GESGEIVIRGPNIFKGYWKREKEN 404 (549)
T ss_dssp TCEEEEE-EECGGGSSEEEECCGGGGGGTTSCCEECTTCEEEEECSSSCCEECT--TCCEEEEEESTTSCSEETTCTTGG
T ss_pred cccccce-EeccccchhhhcCCccccCcCCCccccCCCCEEEEEeCCCCcCCCC--CCceEEEEECcchhhhhCCChhhh
Confidence 3777888 99999988776544333356778999999999999994 4444433 578998 99999999999999999
Q ss_pred ccccC--CCC--eeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEE
Q psy13046 265 KAPDR--KKC--SQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340 (365)
Q Consensus 265 ~~~~~--~~g--~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~ 340 (365)
+++|. .+| ||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|.+|+|++.+++..|+.++|+
T Consensus 405 ~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~ 484 (549)
T 3g7s_A 405 QECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAF 484 (549)
T ss_dssp GTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEEEEEEECCCC------CEEE
T ss_pred hhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEE
Confidence 99983 477 99999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred EEEcCC--CCCCHHHHHHHHHcccCCC
Q psy13046 341 IKLKEN--AKLNADDIRTFCKGKVSKF 365 (365)
Q Consensus 341 v~~~~~--~~~~~~~l~~~~~~~l~~y 365 (365)
|+++++ ...+.++|+++|+++|++|
T Consensus 485 vv~~~~~~~~~~~~~l~~~l~~~L~~~ 511 (549)
T 3g7s_A 485 IVLKPEYRGKVDEEDIIEWVRERISGY 511 (549)
T ss_dssp EEECSTTTTSCCHHHHHHHHHTTCC--
T ss_pred EEECCCccCcCCHHHHHHHHHHhccCc
Confidence 999876 5678899999999999986
No 7
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=5.7e-34 Score=279.85 Aligned_cols=177 Identities=19% Similarity=0.158 Sum_probs=152.2
Q ss_pred CCCCccccccCCcccccccccccccccccccceeeEeecC-eeEEEEEcccceeccCCceeeEE-eecCcccccccCCCc
Q psy13046 185 WPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEH-LFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPA 262 (365)
Q Consensus 185 ~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~-~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~ 262 (365)
..+..+.+. ||+||++..+............++|+|+++ .+++|+|+++.+++. +..||+ ++||++++|||++|+
T Consensus 321 ~~~~~~~~~-YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~--g~~GEl~v~g~~v~~GY~~~~~ 397 (539)
T 1mdb_A 321 VFGCTLQQV-FGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKP--GETGHLLTRGPYTIRGYYKAEE 397 (539)
T ss_dssp HTCSEEEEE-EECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCT--TCCEEEEEECTTSCSSCTTCHH
T ss_pred HhCCcEEEE-EcCCCCcccccCCCCcHHhcCCCCCcccCCCceEEEECCCCCCCcC--CCcceEEeeCcccchhhcCChh
Confidence 346788888 999997543332222112345789999975 589999987766554 578998 999999999999999
Q ss_pred ccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEE
Q psy13046 263 RVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIK 342 (365)
Q Consensus 263 ~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~ 342 (365)
.|+++|..+|||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|.+|+|++.+++..|+.++|+|+
T Consensus 398 ~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv 477 (539)
T 1mdb_A 398 HNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFII 477 (539)
T ss_dssp HHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEE
T ss_pred hhhhhccCCCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEE
Confidence 99999988999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred EcCCCCCCHHHHHHHHHcc-cCCC
Q psy13046 343 LKENAKLNADDIRTFCKGK-VSKF 365 (365)
Q Consensus 343 ~~~~~~~~~~~l~~~~~~~-l~~y 365 (365)
+++ ...+.++|+++|+++ |++|
T Consensus 478 ~~~-~~~~~~~l~~~l~~~~L~~~ 500 (539)
T 1mdb_A 478 PRD-EAPKAAELKAFLRERGLAAY 500 (539)
T ss_dssp ESS-SCCCHHHHHHHHHHTTCCGG
T ss_pred ECC-CCCCHHHHHHHHHhCCCCcc
Confidence 874 456789999999997 9876
No 8
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=1.3e-33 Score=279.46 Aligned_cols=178 Identities=18% Similarity=0.160 Sum_probs=155.8
Q ss_pred ccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eec-----Cccccc
Q psy13046 183 TVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQ-----TMAMKS 256 (365)
Q Consensus 183 ~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g-----~~~~~g 256 (365)
....+..+.+. ||+||++..++.... .....+++|+|+|+++++|+|+++.+++. +..||+ ++| +++++|
T Consensus 362 ~~~~g~~i~~~-YG~TE~~~~~~~~~~-~~~~~~~~G~p~~~~~v~ivd~~g~~~~~--g~~GEl~v~~~~g~~~~~~~g 437 (580)
T 3etc_A 362 LEFTGIKLMEG-FGQTETVVTIATFPW-MEPKPGSIGKPTPGYKIELMDRDGRLCEV--GEEGEIVINTMEGKPVGLFVH 437 (580)
T ss_dssp HHHHSCCCEEE-ECCTTSSCCEECCTT-SCCCTTCCBEECTTCEEEEECTTSCBCCT--TCCEEEEEECTTCCCTTCCCE
T ss_pred HHHhCCeEecc-cccccccceeecCCC-CCCCCCccccCCCCCEEEEECCCCCCCCC--CCceEEEEecCCCCCCeeecc
Confidence 34457788888 999999766554332 23566889999999999999988776654 478998 876 889999
Q ss_pred ccCCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcE
Q psy13046 257 KRGLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 336 (365)
Q Consensus 257 Y~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~ 336 (365)
||++|+.|++.|. +|||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|.+|+|++.+++..|+.
T Consensus 438 Y~~~p~~t~~~f~-~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~ 516 (580)
T 3etc_A 438 YGKDPERTEETWH-DGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQV 516 (580)
T ss_dssp ETTCHHHHHHHEE-TTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEE
T ss_pred ccCCHhHHHhhcC-CCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcE
Confidence 9999999999997 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEcCCCCCC---HHHHHHHHHcccCCC
Q psy13046 337 VGISIKLKENAKLN---ADDIRTFCKGKVSKF 365 (365)
Q Consensus 337 ~~a~v~~~~~~~~~---~~~l~~~~~~~l~~y 365 (365)
+.|+|+++++...+ .++|+++|+++|++|
T Consensus 517 ~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~ 548 (580)
T 3etc_A 517 IKATIVLTKDYTPSDSLKNELQDHVKNVTAPY 548 (580)
T ss_dssp EEEEEEECTTCCCCHHHHHHHHHHHHHHSCGG
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHhhCCCc
Confidence 99999998875544 368999999999876
No 9
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=9.1e-35 Score=286.25 Aligned_cols=180 Identities=17% Similarity=0.165 Sum_probs=87.7
Q ss_pred ccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCC
Q psy13046 183 TVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLP 261 (365)
Q Consensus 183 ~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~ 261 (365)
..++...+.+. ||+||++..++..... ....+++|+|+|+++++|+|++++...+ .+..||+ ++||+++.|||++|
T Consensus 329 ~~~~~~~v~~~-YG~TE~~~~~~~~~~~-~~~~~~vG~~~~~~~~~i~d~~~~~~~~-~g~~GEl~v~g~~v~~GY~~~~ 405 (550)
T 3rix_A 329 KRFHLPGIRQG-YGLTETTSAILITPEG-DDKPGAVGKVVPFFEAKVVDLDTGKTLG-VNQRGELCVRGPMIMSGYVNNP 405 (550)
T ss_dssp HHTTCSCCEEE-EECGGGSSEEEECCTT-CCCTTEEEEECTTCEEEEECTTTCCBCC-TTCCEEEEEESTTSCSEETTCH
T ss_pred HHcCCCccccc-cCcCccccceecCCCC-CCCCCCcccccCCcEEEEEeCCCCcCCC-CCCCeEEEEeCCCcchhhcCCh
Confidence 34554457788 9999998766644332 2566899999999999999965544433 3678998 99999999999999
Q ss_pred cccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEE
Q psy13046 262 ARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341 (365)
Q Consensus 262 ~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v 341 (365)
+.|++.|+.+|||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|.+||+|.+++|++.+++..|+.++|+|
T Consensus 406 ~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~v 485 (550)
T 3rix_A 406 EATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVV 485 (550)
T ss_dssp HHHHHHBCTTSCEEEEEEEEECTTCCEEEC--------------------------------------------------
T ss_pred hhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEE
Confidence 99999998899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCHHHHHHHHHcccCCC
Q psy13046 342 KLKENAKLNADDIRTFCKGKVSKF 365 (365)
Q Consensus 342 ~~~~~~~~~~~~l~~~~~~~l~~y 365 (365)
+++++...+.++++++++++|++|
T Consensus 486 v~~~~~~~~~~~l~~~~~~~l~~~ 509 (550)
T 3rix_A 486 VLEHGKTMTEKEIVDYVASQVTTA 509 (550)
T ss_dssp ------------------------
T ss_pred EecCCCCCCHHHHHHHHHHhcccc
Confidence 998877778889999999998764
No 10
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=2.4e-33 Score=274.06 Aligned_cols=173 Identities=20% Similarity=0.227 Sum_probs=152.8
Q ss_pred CCccccccCCccccccccccccccc-ccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCCccc
Q psy13046 187 GQSYFPCCCGKLRIHPFLEVVQSFE-CRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPARV 264 (365)
Q Consensus 187 ~~~~~~~~yG~tE~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~~~ 264 (365)
+..+.+. ||+||++..++...... ....+++|+|+++++++|+|+++..++.+ .||+ ++||+++.|||++|+.|
T Consensus 308 ~~~~~~~-YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g---~GEl~v~g~~v~~GY~~~p~~t 383 (517)
T 3r44_A 308 NIEVVQG-YALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHG---EGEVVIKSDILLKEYWNRPEAT 383 (517)
T ss_dssp TCEEEEE-EECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEECTTSCEESSE---EEEEEEEETTSCSEETTCHHHH
T ss_pred CCcEEEe-ecccccccceeecCCccccccCCCCCcCCCCeEEEEECCCCCCCCCC---CeEEEEeCcchhhhhCCChhhh
Confidence 7788888 99999987665332222 35668899999999999999776655433 6898 99999999999999999
Q ss_pred ccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEEEc
Q psy13046 265 KAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 344 (365)
Q Consensus 265 ~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~ 344 (365)
++.|. +|||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|.+||+|.+++|++.+++..|+.++++| +.
T Consensus 384 ~~~f~-~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v-~~ 461 (517)
T 3r44_A 384 RDAFD-NGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VA 461 (517)
T ss_dssp HHTEE-TTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE-EE
T ss_pred Hhhhc-CCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEE-EC
Confidence 99996 89999999999999999999999999999999999999999999999999999999999998899888888 55
Q ss_pred CCCCCCHHHHHHHHHcccCCC
Q psy13046 345 ENAKLNADDIRTFCKGKVSKF 365 (365)
Q Consensus 345 ~~~~~~~~~l~~~~~~~l~~y 365 (365)
++...+.++|+++|+++|++|
T Consensus 462 ~~~~~~~~~l~~~l~~~L~~~ 482 (517)
T 3r44_A 462 DQNEVSEQQIVEYCGTRLARY 482 (517)
T ss_dssp CTTTCCHHHHHHHHHHHSCGG
T ss_pred CCCCCCHHHHHHHHHHhCCCC
Confidence 666788899999999999976
No 11
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=2.8e-34 Score=283.91 Aligned_cols=183 Identities=13% Similarity=0.034 Sum_probs=90.8
Q ss_pred chhccCCCCccccccCCcccccccccccccc---cccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccc
Q psy13046 180 TIHTVWPGQSYFPCCCGKLRIHPFLEVVQSF---ECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMK 255 (365)
Q Consensus 180 ~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~---~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~ 255 (365)
++...+++..+.+. ||+||++.+++..... ......++|+|+|+++++|+|+++.+++. +..||+ ++||++|+
T Consensus 345 ~~~~~~~~~~l~~~-YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~~~~~~~--G~~GEl~v~g~~v~~ 421 (570)
T 4gr5_A 345 KARRDHPALRLGNG-YGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAAN--GALGELYVAGAGLAH 421 (570)
T ss_dssp HHHHHCTTCEEEEE-ECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEECTTSCBCCT--TCEEEEEEEETTCCC
T ss_pred HHHHhCCCcEEEEe-echhhheeeeeeeeecccccCCCccccceeeCCCEEEEECCCCCCCCC--CCcEEEEEeecccch
Confidence 34456788889999 9999998766532211 11344579999999999999987766554 588998 99999999
Q ss_pred cccCCCcccccccCC--------CCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEe
Q psy13046 256 SKRGLPARVKAPDRK--------KCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYG 327 (365)
Q Consensus 256 gY~~~~~~~~~~~~~--------~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~ 327 (365)
|||++|+.|+++|.. +|||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|.+|+|++
T Consensus 422 GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~ 501 (570)
T 4gr5_A 422 GYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLA 501 (570)
T ss_dssp EETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC----------------------------------
T ss_pred hcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEE
Confidence 999999999988843 379999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcEEEEEEEEcCC-CCCCHHHHHHHHHcccCCC
Q psy13046 328 VPDERMGEEVGISIKLKEN-AKLNADDIRTFCKGKVSKF 365 (365)
Q Consensus 328 ~~~~~~g~~~~a~v~~~~~-~~~~~~~l~~~~~~~l~~y 365 (365)
.+++..++.++|+|+++++ ...+.++|+++|+++|+.|
T Consensus 502 ~~~~~~~~~~~a~vv~~~~~~~~~~~~l~~~l~~~l~~~ 540 (570)
T 4gr5_A 502 QDSRLGDKQLVAYVVAERADAPPDAAELRRHVAEALPAY 540 (570)
T ss_dssp ---------------------------------------
T ss_pred eeCCCCCeEEEEEEEecCCCCCcCHHHHHHHHHhhCccc
Confidence 9998888999999987653 3456789999999999876
No 12
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=1.2e-32 Score=271.76 Aligned_cols=173 Identities=10% Similarity=0.045 Sum_probs=149.7
Q ss_pred CccccccCCccccccccccccccc--ccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCCccc
Q psy13046 188 QSYFPCCCGKLRIHPFLEVVQSFE--CRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPARV 264 (365)
Q Consensus 188 ~~~~~~~yG~tE~~~~~~~~~~~~--~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~~~ 264 (365)
..+.+. ||+||++..++...... .....++|+|+|+++++|+|++++.++. +..||+ ++||++|+|||++|+.|
T Consensus 317 ~~~~~~-YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~--g~~GEl~v~g~~v~~GY~~~pe~t 393 (563)
T 1amu_A 317 VTYINA-YGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSV--GEAGELCIGGEGLARGYWKRPELT 393 (563)
T ss_dssp SEEEEE-ECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCT--TCEEEEEEEETTCCCEETTCHHHH
T ss_pred CeEEEE-ECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEECCCcCCCCC--CCcEEEEEechhhChhhCCCchhh
Confidence 567777 99999987655322111 1245689999999999999987766543 578998 99999999999999999
Q ss_pred ccccCC------CCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEE
Q psy13046 265 KAPDRK------KCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVG 338 (365)
Q Consensus 265 ~~~~~~------~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~ 338 (365)
+++|.. ++||+|||+|++|+||+|+|+||+||+||++|++|+|.|||++|.+||+|.+++|++.+++..++.++
T Consensus 394 ~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~ 473 (563)
T 1amu_A 394 SQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLC 473 (563)
T ss_dssp HHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEE
T ss_pred hhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEE
Confidence 988842 45999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred EEEEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046 339 ISIKLKENAKLNADDIRTFCKGKVSKF 365 (365)
Q Consensus 339 a~v~~~~~~~~~~~~l~~~~~~~l~~y 365 (365)
|+|++.. ..+.++|+++|+++|++|
T Consensus 474 a~vv~~~--~~~~~~l~~~l~~~L~~y 498 (563)
T 1amu_A 474 AYFVSEK--HIPLEQLRQFSSEELPTY 498 (563)
T ss_dssp EEEEESS--CCCHHHHHHHHHHHSCGG
T ss_pred EEEEeCC--CCCHHHHHHHHHhhCchh
Confidence 9999764 467899999999999876
No 13
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=99.98 E-value=1.2e-32 Score=276.06 Aligned_cols=175 Identities=15% Similarity=0.116 Sum_probs=151.8
Q ss_pred CccccccCCccccccccccccc-ccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eec--CcccccccCCCcc
Q psy13046 188 QSYFPCCCGKLRIHPFLEVVQS-FECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQ--TMAMKSKRGLPAR 263 (365)
Q Consensus 188 ~~~~~~~yG~tE~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g--~~~~~gY~~~~~~ 263 (365)
..+.+. ||+||++..++.... ......+++|+|+||++++|+|+++++++. +..||+ ++| |++++|||++|+.
T Consensus 407 ~~i~~~-YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d~~g~~v~~--g~~GEl~i~g~~p~~~~gY~~~~e~ 483 (652)
T 1pg4_A 407 CPVVDT-WWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEG--ATEGNLVITDSWPGQARTLFGDHER 483 (652)
T ss_dssp SCEEEE-BCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCS--SEEEEEEECSCCTTCCCEETTCHHH
T ss_pred CcEEcc-ccCcccccceecCCCCCcCccCCccccCcCCCeEEEECCCCCCcCC--CceEEEEEccCCCchhhhhcCCHHH
Confidence 678888 999999876553322 222456799999999999999988776644 578998 999 7999999999998
Q ss_pred cccccC--CCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEE
Q psy13046 264 VKAPDR--KKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341 (365)
Q Consensus 264 ~~~~~~--~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v 341 (365)
+.+.|. .+|||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|.+|+|++.+++..|+.++|+|
T Consensus 484 ~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~V 563 (652)
T 1pg4_A 484 FEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYV 563 (652)
T ss_dssp HHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEE
T ss_pred HHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEE
Confidence 877652 378999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred EEcCCCCCC---HHHHHHHHHcccCCC
Q psy13046 342 KLKENAKLN---ADDIRTFCKGKVSKF 365 (365)
Q Consensus 342 ~~~~~~~~~---~~~l~~~~~~~l~~y 365 (365)
+++++...+ .++|+++|+++|++|
T Consensus 564 v~~~~~~~~~~~~~~l~~~l~~~l~~~ 590 (652)
T 1pg4_A 564 TLNHGEEPSPELYAEVRNWVRKEIGPL 590 (652)
T ss_dssp EECTTCCCCHHHHHHHHHHHHHHTCGG
T ss_pred EECCCCCCCHHHHHHHHHHHHHhCCCC
Confidence 998765554 478999999999875
No 14
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=99.98 E-value=1.5e-32 Score=267.66 Aligned_cols=174 Identities=22% Similarity=0.246 Sum_probs=151.6
Q ss_pred cCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEccc---ceeccCCceeeEE-ee-cCccccccc
Q psy13046 184 VWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIV---NSVLYNFKWINQV-SS-QTMAMKSKR 258 (365)
Q Consensus 184 ~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~---~~~~~~~~~~gei-~~-g~~~~~gY~ 258 (365)
...+..+.+. ||+||++ .+.... ....+++|+|+++++++|+|.++ ..++ .+..||+ ++ |+++|.|||
T Consensus 294 ~~~~~~~~~~-YG~TE~~-~~~~~~---~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~--~g~~GEl~v~gg~~~~~GY~ 366 (504)
T 1t5h_X 294 QHLPGEKVNI-YGTTEAM-NSLYMR---QPKTGTEMAPGFFSEVRIVRIGGGVDEIVA--NGEEGELIVAASDSAFVGYL 366 (504)
T ss_dssp HHCCSEEEEE-EEETTTE-EEEEEE---SCSSSSEEBCCTTCCEEEECTTSCTTCBCC--TTCCEEEEEECCTTSCCCBT
T ss_pred HhcCcceeee-ecccccc-cccccc---CCCCCccccCCCCCceeEEeccCCCCCcCC--CCCcceEEEeCCceeeceec
Confidence 3345677888 9999993 222211 24557889999999999999766 3333 3578998 88 999999999
Q ss_pred CCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEE
Q psy13046 259 GLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVG 338 (365)
Q Consensus 259 ~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~ 338 (365)
++|+.|++.|. +|||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|.+||+|.+|+|++.+++..|+.++
T Consensus 367 ~~~~~t~~~f~-~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~ 445 (504)
T 1t5h_X 367 NQPQATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVT 445 (504)
T ss_dssp TCHHHHHHHEE-TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEE
T ss_pred CCchhhhhhhc-CCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEE
Confidence 99999999995 89999999999999999999999999999999999999999999999999999999999998999999
Q ss_pred EEEEEcCCCCCCHHHHHHHHHc-ccCCC
Q psy13046 339 ISIKLKENAKLNADDIRTFCKG-KVSKF 365 (365)
Q Consensus 339 a~v~~~~~~~~~~~~l~~~~~~-~l~~y 365 (365)
|+|+++++...+.++++++|++ +|++|
T Consensus 446 a~vv~~~~~~~~~~~l~~~~~~~~L~~~ 473 (504)
T 1t5h_X 446 ACVVPRLGETLSADALDTFCRSSELADF 473 (504)
T ss_dssp EEEEECTTCCCCHHHHHHHHHTSSCCGG
T ss_pred EEEEecCCcCcCHHHHHHHHhhccCccc
Confidence 9999988777888999999998 89876
No 15
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=99.98 E-value=5.1e-33 Score=274.70 Aligned_cols=175 Identities=18% Similarity=0.128 Sum_probs=151.9
Q ss_pred CCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-ee-----cCcccccccC
Q psy13046 186 PGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SS-----QTMAMKSKRG 259 (365)
Q Consensus 186 ~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~-----g~~~~~gY~~ 259 (365)
.+..+.+. ||+||++..++..... ....+++|+|+|+++++|+|+++++++. +..||+ ++ |+++|+|||+
T Consensus 346 ~g~~i~~~-YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~i~d~~g~~~~~--G~~GEl~v~~~~~~g~~v~~GY~~ 421 (570)
T 3c5e_A 346 TGLDIRES-YGQTETGLTCMVSKTM-KIKPGYMGTAASCYDVQIIDDKGNVLPP--GTEGDIGIRVKPIRPIGIFSGYVD 421 (570)
T ss_dssp HSCCCEEE-EEETTTEEEEECCTTS-CCCTTCCCEECTTCCEEEECTTSCBCCT--TCCEEEEEECSSBCCTTCCCEETT
T ss_pred hCCchhhc-cchhhcccceecCccc-ccCCCcccccCCCceEEEECCCCCCCCC--CCCCeeEEeccCCCCchhhccccC
Confidence 36778888 9999998765543322 2456789999999999999988766544 578998 88 9999999999
Q ss_pred CCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEE
Q psy13046 260 LPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGI 339 (365)
Q Consensus 260 ~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a 339 (365)
+|+.|++.|. ++||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|.+++|++.+++..|+.++|
T Consensus 422 ~~~~t~~~f~-~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a 500 (570)
T 3c5e_A 422 NPDKTAANIR-GDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKA 500 (570)
T ss_dssp CHHHHHHTEE-TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEE
T ss_pred ChhHhhhhhc-CCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEE
Confidence 9999999997 899999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred EEEEcCCCC--C---CHHHHHHHHHcccCCC
Q psy13046 340 SIKLKENAK--L---NADDIRTFCKGKVSKF 365 (365)
Q Consensus 340 ~v~~~~~~~--~---~~~~l~~~~~~~l~~y 365 (365)
+|+++++.. . ..++|+++|+++|++|
T Consensus 501 ~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~ 531 (570)
T 3c5e_A 501 FVVLASQFLSHDPEQLTKELQQHVKSVTAPY 531 (570)
T ss_dssp EEEECGGGTTSCHHHHHHHHHHHHHHHSCGG
T ss_pred EEEECCcccCcchHHHHHHHHHHHHhhCccc
Confidence 999876431 1 2468999999999875
No 16
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=99.98 E-value=8.2e-34 Score=279.04 Aligned_cols=177 Identities=20% Similarity=0.158 Sum_probs=90.6
Q ss_pred CCCCccccccCCcccccccccccccccccccceeeEee-cCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCCc
Q psy13046 185 WPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIF-EHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPA 262 (365)
Q Consensus 185 ~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~ 262 (365)
..+..+.+. ||+||++..++...........++|+|+ ++++++|+|+++.+++. +..||+ ++||+++.|||++|+
T Consensus 330 ~~~~~~~~~-YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~--g~~GEl~v~g~~v~~GY~~~~~ 406 (544)
T 3o83_A 330 VLNCKLQQV-FGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPE--GEIGMLATRGPYTFCGYYQSPE 406 (544)
T ss_dssp HHCSEEEEE-EECTTSCEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCT--TCCEEEEEECTTSCSCCTTCHH
T ss_pred HhCCcEEee-eccccccceeecCCCchhhccCCCceecCCCcEEEEECCCCCCCCC--CCeeEEEEecCCcchhhcCChh
Confidence 347788888 9999997554433222224557899997 79999999977776544 578998 999999999999999
Q ss_pred ccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEE
Q psy13046 263 RVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIK 342 (365)
Q Consensus 263 ~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~ 342 (365)
.|+++|..+|||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|.+||+|.+++|++.+++..|+.++|+|+
T Consensus 407 ~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv 486 (544)
T 3o83_A 407 HNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIV 486 (544)
T ss_dssp HHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC-----------------------------------------------
T ss_pred hhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEE
Confidence 99999988999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred EcCCCCCCHHHHHHHHHc-ccCCC
Q psy13046 343 LKENAKLNADDIRTFCKG-KVSKF 365 (365)
Q Consensus 343 ~~~~~~~~~~~l~~~~~~-~l~~y 365 (365)
.++ ...+.+++++++++ +|++|
T Consensus 487 ~~~-~~~~~~~l~~~~~~~~l~~~ 509 (544)
T 3o83_A 487 SRN-PELKAVVLRRHLMELGIAQY 509 (544)
T ss_dssp ------------------------
T ss_pred eCC-CCCCHHHHHHHHHhCCCCcc
Confidence 876 34566789999988 68876
No 17
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=99.98 E-value=4.9e-33 Score=272.18 Aligned_cols=184 Identities=12% Similarity=0.031 Sum_probs=147.3
Q ss_pred cchhccCCCCccccccCCcccccccccccccc----cccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcc
Q psy13046 179 LTIHTVWPGQSYFPCCCGKLRIHPFLEVVQSF----ECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMA 253 (365)
Q Consensus 179 ~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~----~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~ 253 (365)
..+...+++..+.+. ||+||++..++..... ......++|+|+|+++++|+|+++.+++. +..||+ ++||++
T Consensus 282 ~~~~~~~~~~~i~~~-YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~--g~~GEl~v~g~~v 358 (521)
T 3l8c_A 282 RKLFERFPSAKIINA-YGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSS--GEQGEIIVTGPAV 358 (521)
T ss_dssp HHHHHHCTTCEEEEE-ECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTTSCBCCT--TCCEEEEEESTTS
T ss_pred HHHHHHCCCceEEeC-cCccHHhhhhceeecccccccCCCccccccccCCCEEEEECCCcCCCCC--CCceEEEeccccc
Confidence 344566789999999 9999998765532211 11345689999999999999987776654 478998 999999
Q ss_pred cccccCCCccccccc---CCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecC
Q psy13046 254 MKSKRGLPARVKAPD---RKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPD 330 (365)
Q Consensus 254 ~~gY~~~~~~~~~~~---~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~ 330 (365)
|.|||++|+.|+++| +.+|||+|||+|++|+||+++|+||+||+||++|++|+|.|||++|.+||+|.+++|++.++
T Consensus 359 ~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~ 438 (521)
T 3l8c_A 359 SKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYN 438 (521)
T ss_dssp CSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCS
T ss_pred ChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeec
Confidence 999999999999888 45789999999999999999999999999999999999999999999999999999999876
Q ss_pred CC-CCcEEEEEEEEcCCCCCC-------HHHHHHHHHcccCCC
Q psy13046 331 ER-MGEEVGISIKLKENAKLN-------ADDIRTFCKGKVSKF 365 (365)
Q Consensus 331 ~~-~g~~~~a~v~~~~~~~~~-------~~~l~~~~~~~l~~y 365 (365)
+. .++.++|+|+++++.... .++|+++|+++|++|
T Consensus 439 ~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 481 (521)
T 3l8c_A 439 KEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSY 481 (521)
T ss_dssp SSCC---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGGSCGG
T ss_pred CCCCceEEEEEEEecCccccccccchhhHHHHHHHHHhhCccc
Confidence 54 468899999998764321 468999999999876
No 18
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=99.98 E-value=2.9e-32 Score=266.11 Aligned_cols=183 Identities=13% Similarity=0.015 Sum_probs=154.1
Q ss_pred cchhccCCCCccccccCCcccccccccccccc----cccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcc
Q psy13046 179 LTIHTVWPGQSYFPCCCGKLRIHPFLEVVQSF----ECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMA 253 (365)
Q Consensus 179 ~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~----~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~ 253 (365)
..+...+++..+.+. ||+||++..++..... ......++|+|+|+++++|+|+++.+++. +..||+ ++||++
T Consensus 278 ~~~~~~~~~~~i~~~-YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~--g~~GEl~v~g~~v 354 (511)
T 3e7w_A 278 KALLERFPKAKIFNT-YGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPE--GEKGEIVIAGPSV 354 (511)
T ss_dssp HHHHHHCTTCEEEEC-CCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECTTSCBCCT--TCCEEEEEESTTS
T ss_pred HHHHHHCCCcEEEeC-cccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEECCCCCCCCC--CCceEEEEecCcc
Confidence 334456789999999 9999998766532211 11345679999999999999988766654 578998 999999
Q ss_pred cccccCCCcccccccC-CCC--eeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecC
Q psy13046 254 MKSKRGLPARVKAPDR-KKC--SQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPD 330 (365)
Q Consensus 254 ~~gY~~~~~~~~~~~~-~~g--~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~ 330 (365)
|.|||++|+.|++.|. .+| ||+|||+|++ +||+++|+||+||+||++|++|+|.|||++|.+||+|.+++|++.++
T Consensus 355 ~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~ 433 (511)
T 3e7w_A 355 SRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQP 433 (511)
T ss_dssp CCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECS
T ss_pred ChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcC
Confidence 9999999999999883 133 7999999999 59999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEEEEcCCCCCCH----HHHHHHHHcccCCC
Q psy13046 331 ERMGEEVGISIKLKENAKLNA----DDIRTFCKGKVSKF 365 (365)
Q Consensus 331 ~~~g~~~~a~v~~~~~~~~~~----~~l~~~~~~~l~~y 365 (365)
+..++.++|+|+++++...+. ++|+++|+++||+|
T Consensus 434 ~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~ 472 (511)
T 3e7w_A 434 NGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPAY 472 (511)
T ss_dssp SSSCCEEEEEEEECCCCCSSHHHHHHHHHHHHHHHSCGG
T ss_pred CCCceEEEEEEEeccccccchhhHHHHHHHHHHhhCchh
Confidence 888999999999987654443 67999999999876
No 19
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=99.97 E-value=1.4e-33 Score=275.19 Aligned_cols=179 Identities=19% Similarity=0.263 Sum_probs=91.9
Q ss_pred hhccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccC
Q psy13046 181 IHTVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRG 259 (365)
Q Consensus 181 ~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~ 259 (365)
+...+++..+.+. ||+||++.+++..... ....++|+|+++++++|+|+++.+++. +..||+ ++||+++.|||+
T Consensus 289 ~~~~~~~~~~~~~-YG~TE~~~~~~~~~~~--~~~~~~G~p~~~~~~~i~d~~~~~~~~--g~~GEl~v~g~~~~~gY~~ 363 (509)
T 3ivr_A 289 FEATCPNATFWAT-FGQSETSGLSTFAPYR--DRPKSAGRPLFWRTVAVVDAEDRPLPP--GEVGEIVLRGPTVFKGYWN 363 (509)
T ss_dssp HHHHCTTCEEEEE-EEEGGGTEEEEEEEGG--GSTTSCCEECTTCEEEEECTTSCBCCT--TCCEEEEEESTTSCCEETT
T ss_pred HHHhcCCCeEEcc-cCccccccccccCccc--cCCCcccccCCCcEEEEECCCCCCCCC--CCceEEEEecCCccccccC
Confidence 4445678999999 9999998776643322 233458999999999999988766654 478998 999999999999
Q ss_pred CCcccccccCCCCeeecCceEEEccCCcEEEEeec--CceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEE
Q psy13046 260 LPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRI--KDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 337 (365)
Q Consensus 260 ~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~--~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~ 337 (365)
+|+.|++.|. +|||+|||+|++|+||+++|+||. ||+||++|++|+|.|||++|.+||+|.+|+|++.+++..++.+
T Consensus 364 ~~~~t~~~f~-~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~ 442 (509)
T 3ivr_A 364 NAAATQHAFR-NGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAI 442 (509)
T ss_dssp CHHHHHHHTG-GGSEEEEEEEEECTTSCEEEEEEC---------------------------------------------
T ss_pred CHHHhHHHhh-cCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEE
Confidence 9999999998 999999999999999999999999 9999999999999999999999999999999999999889999
Q ss_pred EEEEEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046 338 GISIKLKENAKLNADDIRTFCKGKVSKF 365 (365)
Q Consensus 338 ~a~v~~~~~~~~~~~~l~~~~~~~l~~y 365 (365)
+|+|+++++...+.++|+++|+++|++|
T Consensus 443 ~a~v~~~~~~~~~~~~l~~~l~~~L~~~ 470 (509)
T 3ivr_A 443 KAVCVCKPGESIAADALAEFVASLIARY 470 (509)
T ss_dssp ----------------------------
T ss_pred EEEEEeCCCCCCCHHHHHHHHHhhCccc
Confidence 9999998877778889999999999876
No 20
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=99.97 E-value=2.3e-32 Score=266.86 Aligned_cols=182 Identities=10% Similarity=-0.013 Sum_probs=154.6
Q ss_pred chhccCCCCccccccCCcccccccccccccc----cccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCccc
Q psy13046 180 TIHTVWPGQSYFPCCCGKLRIHPFLEVVQSF----ECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAM 254 (365)
Q Consensus 180 ~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~----~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~ 254 (365)
.+...+++..+.+. ||+||++..++..... ......++|+|+++++++|+|+++..++. +..||+ ++||+++
T Consensus 280 ~~~~~~~~~~i~~~-YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~--g~~GEl~v~g~~v~ 356 (512)
T 3fce_A 280 KLIERFPKATIMNT-YGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPD--GEKGEIVIVGPSVS 356 (512)
T ss_dssp HHHHHCTTCEEEEE-ECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEECSSSCBCCT--TSCEEEEEESTTSC
T ss_pred HHHHHCCCCEEEeC-cccChhhhheeeEEeccccccccCCCccccccCCcEEEEECCCCCCCCC--CCeEEEEEeccccC
Confidence 34456789999999 9999998766532211 11345689999999999999987766554 477998 9999999
Q ss_pred ccccCCCccccccc---CCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCC
Q psy13046 255 KSKRGLPARVKAPD---RKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDE 331 (365)
Q Consensus 255 ~gY~~~~~~~~~~~---~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~ 331 (365)
.|||++|+.|++.| +.++||+|||+|++ +||+++|+||+||+||++|++|+|.|||++|.+||+|.+|+|++.+++
T Consensus 357 ~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~ 435 (512)
T 3fce_A 357 VGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKG 435 (512)
T ss_dssp SCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEET
T ss_pred hhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecC
Confidence 99999999999888 34679999999999 799999999999999999999999999999999999999999999998
Q ss_pred CCCcEEEEEEEEcCCCCCCH----HHHHHHHHcccCCC
Q psy13046 332 RMGEEVGISIKLKENAKLNA----DDIRTFCKGKVSKF 365 (365)
Q Consensus 332 ~~g~~~~a~v~~~~~~~~~~----~~l~~~~~~~l~~y 365 (365)
..++.++|+|+++++...+. ++++++|+++|++|
T Consensus 436 ~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~ 473 (512)
T 3fce_A 436 EKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNY 473 (512)
T ss_dssp TEEEEEEEEEEECSCCCSSHHHHHHHHHHHHHTTSCGG
T ss_pred CCceEEEEEEecCCccccchhhhHHHHHHHHHhhCchh
Confidence 88899999999876544332 57999999999876
No 21
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=99.97 E-value=2.9e-33 Score=292.76 Aligned_cols=184 Identities=16% Similarity=0.183 Sum_probs=95.4
Q ss_pred chhccCCCCccccccCCcccccccccccc----cccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCccc
Q psy13046 180 TIHTVWPGQSYFPCCCGKLRIHPFLEVVQ----SFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAM 254 (365)
Q Consensus 180 ~~~~~~~~~~~~~~~yG~tE~~~~~~~~~----~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~ 254 (365)
.+...+++..+.+. ||+||++++++... .......+++|+|+|+++++|+|++.+...+. +..||+ ++||+++
T Consensus 363 ~~~~~~~~~~l~~~-YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-g~~GEl~i~g~~v~ 440 (979)
T 3tsy_A 363 AVNAKFPNAKLGQG-YGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSR-NQPGEICIRGHQIM 440 (979)
T ss_dssp HHHHHCTTCEEEEC-EECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCT-TCCEEEEEESTTSC
T ss_pred HHHHHCCCCeEEee-echhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCC-CCccEEEEECCCcc
Confidence 34456789999999 99999987655321 11224567899999999999999764443333 577998 9999999
Q ss_pred ccccCCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCC
Q psy13046 255 KSKRGLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMG 334 (365)
Q Consensus 255 ~gY~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g 334 (365)
+|||++|+.|++.|..+|||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|.+++|++.+++..+
T Consensus 441 ~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g 520 (979)
T 3tsy_A 441 KGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAG 520 (979)
T ss_dssp SEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC--------------------------------------
T ss_pred ccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecccCCC
Confidence 99999999999999889999999999999999999999999999999999999999999999999999999999999889
Q ss_pred cEEEEEEEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046 335 EEVGISIKLKENAKLNADDIRTFCKGKVSKF 365 (365)
Q Consensus 335 ~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~y 365 (365)
+.++|+|+++++...+.++|+++|+++|+.|
T Consensus 521 ~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~ 551 (979)
T 3tsy_A 521 EVPVAFVVKSKDSELSEDDVKQFVSKQVVFY 551 (979)
T ss_dssp -------------------------------
T ss_pred cEEEEEEEECCCCCCCHHHHHHHHHHhcccc
Confidence 9999999988777778889999999999876
No 22
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=99.97 E-value=7.9e-32 Score=268.76 Aligned_cols=177 Identities=20% Similarity=0.172 Sum_probs=153.8
Q ss_pred cCCCCccccccCCcccccccccccccccccccceeeEee-cCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCC
Q psy13046 184 VWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIF-EHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLP 261 (365)
Q Consensus 184 ~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~ 261 (365)
...+..+.+. ||+||++..++...........++|+|+ ++++++|+|+++++++. +..||+ ++||++++|||++|
T Consensus 324 ~~~~~~~~~~-YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~p~--G~~GEl~i~G~~v~~GY~~~p 400 (617)
T 3rg2_A 324 AEIGCQLQQV-FGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQ--GEVGRLMTRGPYTFRGYYKSP 400 (617)
T ss_dssp HHTCSEEEEE-EEETTEEEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCT--TCCEEEEEECSSSCSCCTTCH
T ss_pred HHhCCcEEEE-eccCcceeecccCCCcccccccCCCccCCCCceEEEECCCCCCCCC--CCceEEEecCccccchhcCCh
Confidence 3447788888 9999997655433222223456789997 68899999987766654 478998 99999999999999
Q ss_pred cccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEE
Q psy13046 262 ARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341 (365)
Q Consensus 262 ~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v 341 (365)
+.|+++|..++||+|||+|++++||+++|+||+||+||++|+||+|.|||++|.+||+|.+++|++.+++..++.++|++
T Consensus 401 ~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v 480 (617)
T 3rg2_A 401 QHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYL 480 (617)
T ss_dssp HHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE
T ss_pred hhhhhccCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEE
Confidence 99999998899999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred EEcCCCCCCHHHHHHHHHc-ccCCC
Q psy13046 342 KLKENAKLNADDIRTFCKG-KVSKF 365 (365)
Q Consensus 342 ~~~~~~~~~~~~l~~~~~~-~l~~y 365 (365)
+..+ ..+.+++++++++ +||.|
T Consensus 481 v~~~--~~~~~~l~~~l~~~~lp~~ 503 (617)
T 3rg2_A 481 VVKE--PLRAVQVRRFLREQGIAEF 503 (617)
T ss_dssp EESS--CCCHHHHHHHHHTTTCCGG
T ss_pred EeCC--CCCHHHHHHHHHhCCCccc
Confidence 9876 4678899999998 68876
No 23
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=99.97 E-value=1.6e-31 Score=260.17 Aligned_cols=168 Identities=16% Similarity=0.176 Sum_probs=146.8
Q ss_pred CCCccccccCCccccccccccc-ccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCCcc
Q psy13046 186 PGQSYFPCCCGKLRIHPFLEVV-QSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPAR 263 (365)
Q Consensus 186 ~~~~~~~~~yG~tE~~~~~~~~-~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~~ 263 (365)
.+..+.+. ||+||++..+... .........++|+|+++++++|+|++ .+..||+ ++|+++++|||++|+.
T Consensus 297 ~~~~~~~~-YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-------~~~~GEl~v~g~~~~~gY~~~~~~ 368 (501)
T 3ipl_A 297 YNLPIYNS-FGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN-------KEGHGELMIKGANVMNGYLYPTDL 368 (501)
T ss_dssp TTCCEEEE-EEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC-------SSCCEEEEEESTTSCSCCSBSTTC
T ss_pred hCCCEecc-ccccccccceeecCccccccCCCCCCCCCCCcEEEEecCC-------CCCccEEEEeccchhhhhCcChhh
Confidence 37788888 9999997654422 22222456789999999999999864 2456998 9999999999999999
Q ss_pred cccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEEE
Q psy13046 264 VKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343 (365)
Q Consensus 264 ~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~ 343 (365)
|.. |. +|||+|||+|++|+||+++|+||.||+||++|++|+|.|||++|.+||+|.+++|++.+++..|+.++++++.
T Consensus 369 t~~-~~-~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~ 446 (501)
T 3ipl_A 369 TGT-FE-NGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVS 446 (501)
T ss_dssp CCS-EE-TTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred cch-hc-CCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEe
Confidence 987 65 8999999999999999999999999999999999999999999999999999999999999899999999987
Q ss_pred cCCCCCCHHHHHHHHHcccCCC
Q psy13046 344 KENAKLNADDIRTFCKGKVSKF 365 (365)
Q Consensus 344 ~~~~~~~~~~l~~~~~~~l~~y 365 (365)
.. ..+.++|+++|+++|++|
T Consensus 447 ~~--~~~~~~l~~~l~~~L~~~ 466 (501)
T 3ipl_A 447 ES--DISKAQLIAYLSKHLAKY 466 (501)
T ss_dssp SS--CCCHHHHHHHHHHHSCGG
T ss_pred CC--CCCHHHHHHHHHhhCccc
Confidence 43 567899999999999876
No 24
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=99.97 E-value=6.1e-32 Score=269.21 Aligned_cols=176 Identities=11% Similarity=-0.012 Sum_probs=141.8
Q ss_pred hhccCCCCccccccCCcccccccccccc---cccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCccccc
Q psy13046 181 IHTVWPGQSYFPCCCGKLRIHPFLEVVQ---SFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKS 256 (365)
Q Consensus 181 ~~~~~~~~~~~~~~yG~tE~~~~~~~~~---~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~g 256 (365)
+...+++..+.+. ||+||++.+++... ........++|+|+++++++|+|++++++.+. +..||+ ++|+++++|
T Consensus 296 ~~~~~~~~~l~n~-YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~-g~~GEl~i~G~~v~~G 373 (620)
T 4dg8_A 296 ALLRHPRLHLVNG-YGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEP-DRAGEIVAFGAGLAQG 373 (620)
T ss_dssp HHHHCTTCEEEEE-ECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSS-SCCEEEEEEETTCCSE
T ss_pred HHHhCCCeEEEee-EchhhhhhheEEEeccccccCCCCCCceecccCcEEEEECccCCCCCCC-CCceEEEEeccccccc
Confidence 3445788899999 99999987665321 11124456899999999999999877764433 678998 999999999
Q ss_pred ccCCCcccccccCCC-------CeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeec
Q psy13046 257 KRGLPARVKAPDRKK-------CSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVP 329 (365)
Q Consensus 257 Y~~~~~~~~~~~~~~-------g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~ 329 (365)
||++|+.|+++|..+ +||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|.+|+|++.+
T Consensus 374 Y~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~ 453 (620)
T 4dg8_A 374 YRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRE 453 (620)
T ss_dssp ETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEE
T ss_pred cCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEe
Confidence 999999999999643 7999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCcEEEEEEEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046 330 DERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF 365 (365)
Q Consensus 330 ~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~y 365 (365)
++..++.+++++ ... ++++++++++||.|
T Consensus 454 ~~~~~~lv~~~~-~~~------~~~~~~l~~~Lp~y 482 (620)
T 4dg8_A 454 RNGVKQLLCAWT-GKA------DASPQALLRQLPTW 482 (620)
T ss_dssp ETTEEEEEEEEE-ECT------TCCCHHHHHHSCGG
T ss_pred CCCceEEEEEEe-cCh------HHHHHHHHHhChhh
Confidence 875555444444 332 23344566667665
No 25
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=99.97 E-value=4.2e-32 Score=267.93 Aligned_cols=182 Identities=10% Similarity=0.091 Sum_probs=91.2
Q ss_pred hhccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccC
Q psy13046 181 IHTVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRG 259 (365)
Q Consensus 181 ~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~ 259 (365)
.+...++..+.+. ||+||++..++...........++|+|+++++++|+|++++...+. +..||+ ++||++|+|||+
T Consensus 313 ~~~~~~~~~~~~~-YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-g~~GEl~v~g~~v~~GY~~ 390 (562)
T 3ite_A 313 IWSSSDRVALVNV-YGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKK-GMAGELVIEGSLVANGYLN 390 (562)
T ss_dssp HHTTCSSCEEEEE-ECCGGGCSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCBCCT-TSCEEEEEESTTSCCEESS
T ss_pred HHhhCCCcEEEEe-eccchheeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCCCCC-CCceEEEEeccccchhhCC
Confidence 4445667888888 9999998766643333335567899999999999999766554443 578998 999999999999
Q ss_pred CCcccccccCCCC--eeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcC-CCeeEEEEEeecCCCCCcE
Q psy13046 260 LPARVKAPDRKKC--SQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTH-PNVLEAYAYGVPDERMGEE 336 (365)
Q Consensus 260 ~~~~~~~~~~~~g--~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~-~~v~~~~v~~~~~~~~g~~ 336 (365)
+|+.|+..+. +| ||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+| |.+.+++|++.+++..++.
T Consensus 391 ~p~~t~~~~~-~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~ 469 (562)
T 3ite_A 391 RPDAKGFCDI-NGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQ 469 (562)
T ss_dssp CTTCCSEEEE-TTEEEEEEEEEEEECTTSCEEEEEEC-------------------------------------------
T ss_pred CccccccccC-CCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcce
Confidence 9999887664 55 999999999999999999999999999999999999999999998 8888999999999887777
Q ss_pred EEEEEEEcCCCCCC-------------HHHHHHHHHcccCCC
Q psy13046 337 VGISIKLKENAKLN-------------ADDIRTFCKGKVSKF 365 (365)
Q Consensus 337 ~~a~v~~~~~~~~~-------------~~~l~~~~~~~l~~y 365 (365)
.+++++...+.... .++|+++|+++|++|
T Consensus 470 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y 511 (562)
T 3ite_A 470 FLVSFVASSGAAVRGELRWINENYKEINNSLRQACEQTLPAY 511 (562)
T ss_dssp ------------------------------------------
T ss_pred EEEEEEecccccccccccccccchhhHHHHHHHHHHhhCCcc
Confidence 66666554332221 248999999999987
No 26
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=99.97 E-value=1.6e-31 Score=268.25 Aligned_cols=176 Identities=14% Similarity=0.055 Sum_probs=147.7
Q ss_pred CccccccCCccccccccccccc--ccccccceeeEeecCeeEEEEEc-ccceeccCCceeeEE-eec--CcccccccCCC
Q psy13046 188 QSYFPCCCGKLRIHPFLEVVQS--FECRRYQVVLHIFEHLFLELVLY-IVNSVLYNFKWINQV-SSQ--TMAMKSKRGLP 261 (365)
Q Consensus 188 ~~~~~~~yG~tE~~~~~~~~~~--~~~~~~~~~G~~~~~~~~~i~d~-~~~~~~~~~~~~gei-~~g--~~~~~gY~~~~ 261 (365)
..+.+. ||+||++..++.... ......+++|+|+||++++|+|+ ++++++. .+..||+ ++| |++++|||++|
T Consensus 413 ~~i~~~-YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~-~g~~Gel~i~g~~p~~~~gy~~~~ 490 (663)
T 1ry2_A 413 IPIVDT-YWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNT-SHAEGVLAVKAAWPSFARTIWKNH 490 (663)
T ss_dssp SCEEEC-BCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEEC-SSCEEEEEESSCCTTSCCEETTCH
T ss_pred ceEEEe-ECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCC-CCcceEEEEecCCCchhcccccCh
Confidence 678888 999999865553322 22346689999999999999998 6665543 2567898 999 68999999999
Q ss_pred cccccccC--CCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEE
Q psy13046 262 ARVKAPDR--KKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGI 339 (365)
Q Consensus 262 ~~~~~~~~--~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a 339 (365)
+.+.+.|. .+|||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|.+||.|.+|+|++.+++..|+.++|
T Consensus 491 ~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a 570 (663)
T 1ry2_A 491 DRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAA 570 (663)
T ss_dssp HHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEE
T ss_pred HHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEE
Confidence 98887763 3799999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred EEEEcCCCC---C-C------HHHHHHHHHcccCCC
Q psy13046 340 SIKLKENAK---L-N------ADDIRTFCKGKVSKF 365 (365)
Q Consensus 340 ~v~~~~~~~---~-~------~~~l~~~~~~~l~~y 365 (365)
||+++++.. . + .++|+++|+++|++|
T Consensus 571 ~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~ 606 (663)
T 1ry2_A 571 FVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPF 606 (663)
T ss_dssp EEEEC------------CCSHHHHHHHHHHHHTCTT
T ss_pred EEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCC
Confidence 999987543 2 2 478999999999876
No 27
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=99.97 E-value=1.7e-31 Score=261.81 Aligned_cols=174 Identities=18% Similarity=0.121 Sum_probs=146.0
Q ss_pred CCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCCccc
Q psy13046 186 PGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPARV 264 (365)
Q Consensus 186 ~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~~~ 264 (365)
.+..+.+. ||+||++.++....... ...+++|+|+|+++++|+|+++++++. +..||+ ++||+++.|||++|+.|
T Consensus 324 ~g~~i~~~-YG~TE~~~~~~~~~~~~-~~~~~~G~p~~~~~~~i~d~~g~~~~~--g~~GEl~v~g~~~~~gY~~~~~~t 399 (529)
T 2v7b_A 324 FGCEILDG-IGSTEMLHIFLSNRAGA-VEYGTTGRPVPGYEIELRDEAGHAVPD--GEVGDLYIKGPSAAVMYWNNREKS 399 (529)
T ss_dssp HSCCEEEE-EECTTTSSEEEECCTTC-CCTTSCCEECTTCEEEEECTTSCBCCT--TSCEEEEEECTTCCCCBTTCHHHH
T ss_pred hCCceeee-EchhhcCceeeccccCC-CccCCcccCCCCCEEEEECCCCCCCCC--CCccEEEEecCCcccccCCChHHH
Confidence 47788888 99999966544332222 456789999999999999987766553 578998 99999999999999999
Q ss_pred ccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEEEc
Q psy13046 265 KAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 344 (365)
Q Consensus 265 ~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~ 344 (365)
++.|. ++||+|||+|++|+||+++|+||+||+||++|++|+|.|||++|.+||+|.+++|++. ++..++.++|+|+++
T Consensus 400 ~~~f~-~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~~a~vv~~ 477 (529)
T 2v7b_A 400 RATFL-GEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVVLK 477 (529)
T ss_dssp HHHEE-TTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEEEEEEEEC
T ss_pred HHhhh-cCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEEEEEEEec
Confidence 99997 8999999999999999999999999999999999999999999999999999999999 666788899999987
Q ss_pred CCCCC---CHHHHHHHHHcccCCC
Q psy13046 345 ENAKL---NADDIRTFCKGKVSKF 365 (365)
Q Consensus 345 ~~~~~---~~~~l~~~~~~~l~~y 365 (365)
++... ..++|+++|+++|++|
T Consensus 478 ~~~~~~~~~~~~l~~~l~~~L~~~ 501 (529)
T 2v7b_A 478 REFAPSEILAEELKAFVKDRLAPH 501 (529)
T ss_dssp TTCCCCHHHHHHHHHHHHTTSCTT
T ss_pred CCCCcchhHHHHHHHHHHhhcchh
Confidence 65422 2368999999999986
No 28
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=99.97 E-value=8.6e-31 Score=280.94 Aligned_cols=179 Identities=15% Similarity=0.104 Sum_probs=154.3
Q ss_pred hccCCCCccccccCCcccccccccccccc---cccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccc
Q psy13046 182 HTVWPGQSYFPCCCGKLRIHPFLEVVQSF---ECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSK 257 (365)
Q Consensus 182 ~~~~~~~~~~~~~yG~tE~~~~~~~~~~~---~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY 257 (365)
...+++..+.+. ||+||++..++..... ......++|+|+++++++|+|+++++++. +..||+ ++|+++++||
T Consensus 741 ~~~~~~~~l~n~-YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~--G~~GEl~i~G~~v~~GY 817 (1304)
T 2vsq_A 741 LRIMGPGKLINC-YGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPF--GAVGELCISGMGVSKGY 817 (1304)
T ss_dssp HHHHCTTCEEEE-ECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEECTTSCBCCT--TCCEEEEEEETTCCCCB
T ss_pred HHhCCCCEEEEe-EChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEECCCcCCCCC--CCceEEEEeccccCccc
Confidence 345677788898 9999998776633211 11344679999999999999987766554 578998 9999999999
Q ss_pred cCCCcccccccCC------CCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCC
Q psy13046 258 RGLPARVKAPDRK------KCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDE 331 (365)
Q Consensus 258 ~~~~~~~~~~~~~------~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~ 331 (365)
+++|+.|+++|.. ++||+|||+|++++||+|+|+||+||+||++|+||+|.|||++|.+||+|.+|+|++.+++
T Consensus 818 ~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~ 897 (1304)
T 2vsq_A 818 VNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHE 897 (1304)
T ss_dssp TTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCS
T ss_pred cCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEecC
Confidence 9999999998842 4599999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCcEEEEEEEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046 332 RMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF 365 (365)
Q Consensus 332 ~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~y 365 (365)
..++.++|+|+.+. ..+.++++++|+++||.|
T Consensus 898 ~~~~~l~a~vv~~~--~~~~~~l~~~l~~~Lp~y 929 (1304)
T 2vsq_A 898 SGDASINAYLVNRT--QLSAEDVKAHLKKQLPAY 929 (1304)
T ss_dssp SSCCEEEEEEECSS--SSCHHHHHHHHHHHSCGG
T ss_pred CCCEEEEEEEeCCC--CCCHHHHHHHHHHhChHh
Confidence 88889999998764 467899999999999986
No 29
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=99.95 E-value=2.6e-29 Score=249.42 Aligned_cols=172 Identities=16% Similarity=0.179 Sum_probs=138.5
Q ss_pred CCCccccccCCccccccccccccc--------------------------ccccccceeeEeecCeeEEEEEcccceecc
Q psy13046 186 PGQSYFPCCCGKLRIHPFLEVVQS--------------------------FECRRYQVVLHIFEHLFLELVLYIVNSVLY 239 (365)
Q Consensus 186 ~~~~~~~~~yG~tE~~~~~~~~~~--------------------------~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~ 239 (365)
++..+.+. ||+||++.+++.... .......++|+|+++ ++|+|++++...+
T Consensus 319 ~~~~~~~~-YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~ 395 (590)
T 3kxw_A 319 RKEAFYPC-YGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCD 395 (590)
T ss_dssp CGGGEEEE-EECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCC
T ss_pred Cccccccc-cccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCC
Confidence 34567888 999999876653211 111345688999998 8889987443333
Q ss_pred CCceeeEE-eecCcccccccCCCcccccccCC------CC--eeecCceEEEccCCcEEEEeecCceEEeCceEeChHHH
Q psy13046 240 NFKWINQV-SSQTMAMKSKRGLPARVKAPDRK------KC--SQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEI 310 (365)
Q Consensus 240 ~~~~~gei-~~g~~~~~gY~~~~~~~~~~~~~------~g--~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~ei 310 (365)
.+..||+ ++||++|+|||++|+.|+++|.. +| ||+|||+|++| ||+|+|+||+||+||++|+||+|.||
T Consensus 396 -~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eI 473 (590)
T 3kxw_A 396 -FDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDI 473 (590)
T ss_dssp -TTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHH
T ss_pred -CCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHHH
Confidence 3578998 99999999999999999998863 24 99999999999 99999999999999999999999999
Q ss_pred HHHH-HcCCCee--EEEEEeecCCCCCcEEEEEEEEcCCC--CCCHHHHHHHHHcccC
Q psy13046 311 EEFI-QTHPNVL--EAYAYGVPDERMGEEVGISIKLKENA--KLNADDIRTFCKGKVS 363 (365)
Q Consensus 311 E~~l-~~~~~v~--~~~v~~~~~~~~g~~~~a~v~~~~~~--~~~~~~l~~~~~~~l~ 363 (365)
|++| ..||.|. +|+|++++++. ++.++++++++++. ..+.++++++|+++|+
T Consensus 474 E~~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~ 530 (590)
T 3kxw_A 474 EFSLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFMDDVAQDNLFNEIFELVY 530 (590)
T ss_dssp HHHHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCccccCccEEEEEecCCC-CceEEEEEEeccccccchhHHHHHHHHHHHHH
Confidence 9999 7899998 89999998875 67888999887653 3455778888877665
No 30
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=99.95 E-value=1e-28 Score=244.26 Aligned_cols=169 Identities=17% Similarity=0.192 Sum_probs=134.7
Q ss_pred CCccccccCCccccccccccccccc---------------------------ccccceeeEeecCeeEEEEEcccceecc
Q psy13046 187 GQSYFPCCCGKLRIHPFLEVVQSFE---------------------------CRRYQVVLHIFEHLFLELVLYIVNSVLY 239 (365)
Q Consensus 187 ~~~~~~~~yG~tE~~~~~~~~~~~~---------------------------~~~~~~~G~~~~~~~~~i~d~~~~~~~~ 239 (365)
+..+.+. ||+||++..++...... .....++|+|+|+++++|+|+++.+++.
T Consensus 330 ~~~~~~~-YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~ 408 (576)
T 3gqw_A 330 NKTFMPC-YGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRNEAGMPVAE 408 (576)
T ss_dssp GGGEEEE-EECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEECTTSCBCCT
T ss_pred ccccccc-CCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEECCCCCCCCC
Confidence 6778888 99999987665322110 0112378999999999999977766654
Q ss_pred CCceeeEE-eecCcccccccCCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCC
Q psy13046 240 NFKWINQV-SSQTMAMKSKRGLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHP 318 (365)
Q Consensus 240 ~~~~~gei-~~g~~~~~gY~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~ 318 (365)
+..||+ ++||++++|||++|+.+.+.+. +|||+|||+|++ +||+++|+||+||+||++|+||+|.|||++|.+||
T Consensus 409 --g~~GEl~v~g~~~~~gY~~~~~~~~~~~~-~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p 484 (576)
T 3gqw_A 409 --RVVGHICISGPSLMSGYFGDQVSQDEIAA-TGWLDTGDLGYL-LDGYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQEP 484 (576)
T ss_dssp --TBCEEEEEESTTSCCCBTTCHHHHHHHHH-HSCEEEEEEEEE-ETTEEEEEEETTTCEEETTEEECHHHHHHHHTTSS
T ss_pred --CCeEEEEEeCccccccccCCccccccccC-CCeeeccceEEE-ECCEEEEEecCcceEEECCEEECHHHHHHHHHhCc
Confidence 478998 9999999999999998877665 899999999999 79999999999999999999999999999999999
Q ss_pred CeeEEEEEeecCCCCCcEEEEEEEEcCCCCCCHHHHHHHHHccc
Q psy13046 319 NVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKV 362 (365)
Q Consensus 319 ~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~l 362 (365)
+|.+++|++..++.. ...++++...+.....++++++++++|
T Consensus 485 ~V~~~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~~l 526 (576)
T 3gqw_A 485 EIHSGDAIAFVTAQE--KIILQIQCRISDEERRGQLIHALAARI 526 (576)
T ss_dssp SCCTTSEEEEECTTS--CEEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred ccccccEEEEEcCCc--cEEEEEEEecCchhHHHHHHHHHHHHH
Confidence 999988888877643 345555544433334467777777766
No 31
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.91 E-value=1e-24 Score=208.45 Aligned_cols=159 Identities=13% Similarity=0.136 Sum_probs=124.6
Q ss_pred CCCccccccCCccccccc-ccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCCcc
Q psy13046 186 PGQSYFPCCCGKLRIHPF-LEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPAR 263 (365)
Q Consensus 186 ~~~~~~~~~yG~tE~~~~-~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~~ 263 (365)
.+..+.+. ||+||++.. ..... ......+.+.+++.++|+|++.+...+ .+..||+ ++|.
T Consensus 230 ~g~~v~~~-YG~TE~~~~~~~~~~----~~~~g~~~~~~~~~v~i~d~~~g~~~~-~g~~Gel~v~~~------------ 291 (436)
T 3qov_A 230 LNVKAYNS-FGMTEMNGPGVAFEC----QEQNGMHFWEDCYLVEIIDPETGEPVP-EGEIGELVLTTL------------ 291 (436)
T ss_dssp HTSEEEEE-EEEGGGTEEEEEEEC----TTCSSEEECTTTEEEEEECTTTCSBCS-TTCCEEEEEEES------------
T ss_pred hCccEEec-CcchhhcCCeeEEec----CCCCeeEEccCceEEEEEECCCCCCCC-CCCceEEEEecc------------
Confidence 37788888 999999543 22211 111235677779999999954443333 3578888 7762
Q ss_pred cccccCCCCeeecCceEEEccCC------c---EEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCC
Q psy13046 264 VKAPDRKKCSQRPRYQFVLREDG------Y---GQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMG 334 (365)
Q Consensus 264 ~~~~~~~~g~~~TGD~~~~~~~G------~---l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g 334 (365)
+.+.|. ++||+|||+|+++++| + ++|+||.||+||++|++|+|.|||++|.+||+|.+++|++.+++..+
T Consensus 292 ~~~~~~-~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~ 370 (436)
T 3qov_A 292 DREMMP-LIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQ 370 (436)
T ss_dssp SCCSSC-CCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTE
T ss_pred CcCCce-EEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCC
Confidence 344453 8999999999999998 5 69999999999999999999999999999999999999999988888
Q ss_pred cEEEEEEEEcCCCCCC----HHHHHHHHHcccCC
Q psy13046 335 EEVGISIKLKENAKLN----ADDIRTFCKGKVSK 364 (365)
Q Consensus 335 ~~~~a~v~~~~~~~~~----~~~l~~~~~~~l~~ 364 (365)
+.++|+|+++ +...+ .++++++++++|+.
T Consensus 371 ~~l~a~v~~~-~~~~~~~~~~~~l~~~l~~~l~~ 403 (436)
T 3qov_A 371 DEMIVEVELS-DLSTDNYIELEKIRRDIIRQLKD 403 (436)
T ss_dssp EEEEEEEEEC-TTCCCCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEEEc-CccccchhhHHHHHHHHHHHHHH
Confidence 9999999998 55454 56788888877654
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.90 E-value=1.5e-24 Score=201.88 Aligned_cols=148 Identities=14% Similarity=0.162 Sum_probs=116.9
Q ss_pred CCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCCccc
Q psy13046 186 PGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPARV 264 (365)
Q Consensus 186 ~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~~~ 264 (365)
.+..+.+. ||+||++..+...... ....+.+|.+.|++++.+.+ .||+ ++|+.
T Consensus 171 ~~~~~~~~-YG~TEt~~~~~~~~~~-~~~~g~~~~~~pgv~~~~~~------------~Gel~~~g~~------------ 224 (358)
T 4gs5_A 171 LAMPVYQS-YGMTETVSHVALKALN-GPEASELYVFLPGIQYGVDE------------RGCLHISGAV------------ 224 (358)
T ss_dssp CSSCEEEE-EECGGGSSEEEEEECS-STTCCSCEEECTTCEEEECT------------TSEEEEESGG------------
T ss_pred cCceEEec-cccccccceeeccccc-ccccceeeccCCCeEEEecC------------cCceEEeccc------------
Confidence 46778888 9999998766543322 23456789999998887533 2565 65542
Q ss_pred ccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHH---cCCCeeEEEEE-eecCCCCCcEEEEE
Q psy13046 265 KAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ---THPNVLEAYAY-GVPDERMGEEVGIS 340 (365)
Q Consensus 265 ~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~---~~~~v~~~~v~-~~~~~~~g~~~~a~ 340 (365)
..+|||+|||+|++|+|| ++|+||+||+||++|+||+|.|||++|. +||.|.+++|+ +.+++..|+.++|+
T Consensus 225 ----~~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~ 299 (358)
T 4gs5_A 225 ----TNGQTVQTNDLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLV 299 (358)
T ss_dssp ----GTTCCEEEEEEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEE
T ss_pred ----ccCcceecCCccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEE
Confidence 237899999999999988 6677999999999999999999998774 68999998886 67788889999998
Q ss_pred EEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046 341 IKLKENAKLNADDIRTFCKGKVSKF 365 (365)
Q Consensus 341 v~~~~~~~~~~~~l~~~~~~~l~~y 365 (365)
|+...+ ....++|+++|+++|++|
T Consensus 300 v~~~~~-~~~~~~l~~~l~~~L~~~ 323 (358)
T 4gs5_A 300 IENAMP-EALTERLTAEIRSRVSTY 323 (358)
T ss_dssp EESCCC-HHHHHHHHHHHHHHSCGG
T ss_pred EECCCC-CcCHHHHHHHHHhhCCCC
Confidence 876543 345578999999999876
No 33
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.90 E-value=3.8e-24 Score=204.93 Aligned_cols=160 Identities=15% Similarity=0.199 Sum_probs=121.5
Q ss_pred CCccccccCCcccc-cccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCCccc
Q psy13046 187 GQSYFPCCCGKLRI-HPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPARV 264 (365)
Q Consensus 187 ~~~~~~~~yG~tE~-~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~~~ 264 (365)
+..+.+. ||+||+ ++.+...... ...+ .+.+.+++.++|+|++++...+ .+..||+ ++| .+
T Consensus 237 g~~v~~~-YG~TE~~g~~~~~~~~~--~~~g-~~~~~~~~~~~i~d~~~g~~~~-~G~~Gel~v~~------------~t 299 (443)
T 2y4o_A 237 GIDALDI-YGLSEVMGPGVACECVE--TKDG-PVIWEDHFYPEIIDPVTGEVLP-DGSQGELVFTS------------LT 299 (443)
T ss_dssp TCEEEEE-EEETTTTEEEEEEECTT--TCCS-EEECTTTEEEEEECTTTCCBCC-TTCCEEEEEEE------------SS
T ss_pred CcCEEec-cCchhhcCCeEEeccCC--CCCc-eEEccCCeEEEEEcCCCCCCCC-CCCceEEEEeC------------CC
Confidence 7788888 999997 4423221111 1111 4556679999999975433333 3568888 765 23
Q ss_pred ccccCCCCeeecCceEEEccC-CcE-----EEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEE
Q psy13046 265 KAPDRKKCSQRPRYQFVLRED-GYG-----QVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVG 338 (365)
Q Consensus 265 ~~~~~~~g~~~TGD~~~~~~~-G~l-----~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~ 338 (365)
.+.| +++||+|||+|+++++ |++ +|+||.||+||++|++|+|.|||++|.+||+|.++++++.+++..++.+.
T Consensus 300 ~~~~-p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~ 378 (443)
T 2y4o_A 300 KEAM-PVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLD 378 (443)
T ss_dssp CSSS-CCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEE
T ss_pred cccC-hhheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEE
Confidence 4445 3899999999999999 987 89999999999999999999999999999999999999988877778899
Q ss_pred EEEEEcC--C---CCCCHHHHHHHHHcccCC
Q psy13046 339 ISIKLKE--N---AKLNADDIRTFCKGKVSK 364 (365)
Q Consensus 339 a~v~~~~--~---~~~~~~~l~~~~~~~l~~ 364 (365)
++|++++ + ...+.++++++|+++|+.
T Consensus 379 a~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 409 (443)
T 2y4o_A 379 LAVELRSEAAASVTDGERAALARELQHRIKT 409 (443)
T ss_dssp EEEEECHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCcccccchhhHHHHHHHHHHHHHHH
Confidence 9999875 2 223446788888877754
No 34
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.90 E-value=2.2e-24 Score=206.30 Aligned_cols=160 Identities=15% Similarity=0.108 Sum_probs=123.0
Q ss_pred CCccccccCCcccc-cccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCCccc
Q psy13046 187 GQSYFPCCCGKLRI-HPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPARV 264 (365)
Q Consensus 187 ~~~~~~~~yG~tE~-~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~~~ 264 (365)
+..+.+. ||+||+ ++.+...... .....+.+.+++.++|+|++++...+ .+..||+ ++| .+
T Consensus 235 g~~v~~~-YG~TE~~g~~~~~~~~~---~~~g~~~~~~~~~~~i~d~~~g~~~~-~g~~Gel~v~~------------~t 297 (437)
T 2y27_A 235 GIDAVDI-YGLSEVMGPGVASECVE---TKDGPTIWEDHFYPEIIDPETGEVLP-DGELGELVFTS------------LT 297 (437)
T ss_dssp TSEEEEE-EEETTTTEEEEEECCTT---TCSSCEECTTTEEEEEECTTTCCBCC-TTCCEEEEEEE------------SS
T ss_pred CcCEEec-CCchhhcCCeeEEecCC---CCCceeEccCceEEEEEcCCCCCCCC-CCCccEEEEec------------CC
Confidence 7788888 999998 4423321111 11124666789999999976443333 3568888 766 23
Q ss_pred ccccCCCCeeecCceEEEcc-CCcE-----EEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEE
Q psy13046 265 KAPDRKKCSQRPRYQFVLRE-DGYG-----QVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVG 338 (365)
Q Consensus 265 ~~~~~~~g~~~TGD~~~~~~-~G~l-----~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~ 338 (365)
.+.|. ++||+|||+|++|+ +|++ +|+||.||+||++|++|+|.|||++|.+||+|.+++|++++++..++.++
T Consensus 298 ~~~~~-~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~ 376 (437)
T 2y27_A 298 KEALP-IIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLT 376 (437)
T ss_dssp CSSSC-CCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEE
T ss_pred cCCch-hheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEE
Confidence 44553 89999999999999 6986 89999999999999999999999999999999999999988877788999
Q ss_pred EEEEEcCCCC---CCHHHHHHHHHcccCC
Q psy13046 339 ISIKLKENAK---LNADDIRTFCKGKVSK 364 (365)
Q Consensus 339 a~v~~~~~~~---~~~~~l~~~~~~~l~~ 364 (365)
|+|+++++.. .+.++++++|+++|+.
T Consensus 377 a~v~~~~~~~~~~~~~~~l~~~l~~~l~~ 405 (437)
T 2y27_A 377 LNVEPCPETAPDTAAIQVAKQALAYDIKS 405 (437)
T ss_dssp EEECBCTTTTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCccchhhhHHHHHHHHHHHHHH
Confidence 9999876543 2346788888887764
No 35
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=99.87 E-value=1.5e-21 Score=189.94 Aligned_cols=143 Identities=26% Similarity=0.333 Sum_probs=128.4
Q ss_pred ccCCCCCCceEEEE-ecCchhhhhhcc------cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHh
Q psy13046 11 NQHSSRQKKAIHFR-HFDSFLLFVELC------LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ 83 (365)
Q Consensus 11 ~~~~~~~~g~~~~~-~~~~~~~y~~~~------~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~ 83 (365)
+.++.|+.|||+++ ++..|.+|++.. |..+||+|||++++|+||+++|.||.||+||++|++|+|.+||++|.
T Consensus 343 ~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~ 422 (504)
T 1t5h_X 343 EIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLG 422 (504)
T ss_dssp CBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHT
T ss_pred CcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHH
Confidence 56677899999999 889999999873 56899999999999999999999999999999999999999999999
Q ss_pred cCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHh-hhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046 84 THPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKG-KVKRKISCIFIIIVRISCECILLKYRSAST 158 (365)
Q Consensus 84 ~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~-~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~ 158 (365)
+||.|.+++|++++++..++.+.++|+++++...+.+++.+++++ +++.++.+.. +.+.+.+|++.+||+
T Consensus 423 ~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~~L~~~~~P~~-----i~~v~~lP~t~~GKi 493 (504)
T 1t5h_X 423 TAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKR-----YFILDQLPKNALNKV 493 (504)
T ss_dssp TSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCCCHHHHHHHHHTSSCCGGGSCSE-----EEECSCCCBCTTSCB
T ss_pred hCCCcceEEEEEeecCCCCcEEEEEEEecCCcCcCHHHHHHHHhhccCcccccceE-----EEEhhhCCCCCCCCE
Confidence 999999999999999888999999999988766788899999998 7888777643 445678999999998
No 36
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=99.86 E-value=1.5e-21 Score=189.99 Aligned_cols=143 Identities=24% Similarity=0.298 Sum_probs=129.6
Q ss_pred ccCCCCCCceEEEEecCchhhhhhcc------c-ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHh
Q psy13046 11 NQHSSRQKKAIHFRHFDSFLLFVELC------L-LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ 83 (365)
Q Consensus 11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~-~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~ 83 (365)
+.++.|+.|||+++|+.++.+|+++. | .++||+|||++++|+||+++|.||.||+||++|++|+|.+||++|.
T Consensus 340 ~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~ 419 (503)
T 4fuq_A 340 KELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEID 419 (503)
T ss_dssp CBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHH
T ss_pred CCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHH
Confidence 56788899999999999999999873 4 5899999999999999999999999999999999999999999999
Q ss_pred cCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046 84 THPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST 158 (365)
Q Consensus 84 ~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~ 158 (365)
+||.|.+++|++++++..++.+.++++.+++...+.+++.+++++.++.++.+.. +.+.+.+|++.+||+
T Consensus 420 ~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~L~~~~~P~~-----i~~v~~lP~t~~GKi 489 (503)
T 4fuq_A 420 AMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQLAKFKMPKK-----VIFVDDLPRNTMGKV 489 (503)
T ss_dssp TSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHBTTBCGGGCCSE-----EEEESCCCBCTTSCB
T ss_pred hCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCCHHHHHHHHHhhcccCCCCCE-----EEEECCCCCCcccce
Confidence 9999999999999998888999999999887778888999999999888776643 345678999999998
No 37
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=99.86 E-value=2.5e-21 Score=189.85 Aligned_cols=143 Identities=19% Similarity=0.161 Sum_probs=129.7
Q ss_pred ccCCCCCCceEEEEecCchhhhhhcc------c-ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHh
Q psy13046 11 NQHSSRQKKAIHFRHFDSFLLFVELC------L-LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ 83 (365)
Q Consensus 11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~-~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~ 83 (365)
+.++.++.|||+++|+.++.+|+++. | ..+||+|||++++|+||+++|.||.||+||++|++|+|.+||+++.
T Consensus 375 ~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~ 454 (536)
T 3ni2_A 375 ASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLI 454 (536)
T ss_dssp CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHH
T ss_pred cCCCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHH
Confidence 55677899999999999999999873 4 6899999999999999999999999999999999999999999999
Q ss_pred cCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046 84 THPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST 158 (365)
Q Consensus 84 ~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~ 158 (365)
+||.|.+++|++++++..++.++++++..++...+.+++.++++++++.++.+.. +.+.+.+|++.+||+
T Consensus 455 ~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~-----i~~v~~lP~t~~GKi 524 (536)
T 3ni2_A 455 AHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATEDEIKQYISKQVIFYKRIKR-----VFFIEAIPKAPSGKI 524 (536)
T ss_dssp TSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGCCSE-----EEECSCCCBCTTSCB
T ss_pred hCCCcceEEEEeeecCCCCceeEEEEEecCCCCCCHHHHHHHHHHhccCCccccE-----EEEEecCCCCCCCCe
Confidence 9999999999999998888999999998887777889999999999988777643 446678999999998
No 38
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=99.85 E-value=5.5e-21 Score=187.47 Aligned_cols=142 Identities=20% Similarity=0.232 Sum_probs=125.8
Q ss_pred ccCCCCCCceEEEEecCchhhhhhcc------c-ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHh
Q psy13046 11 NQHSSRQKKAIHFRHFDSFLLFVELC------L-LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ 83 (365)
Q Consensus 11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~-~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~ 83 (365)
+.++.|+.|||+++|+.++.||+++. | .++||+|||++++|+||+++|.||.||+||++|++|+|.+||++|.
T Consensus 371 ~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~ 450 (539)
T 1mdb_A 371 RDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLL 450 (539)
T ss_dssp CBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHT
T ss_pred CCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHH
Confidence 56677899999999999999999873 4 6899999999999999999999999999999999999999999999
Q ss_pred cCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhh-hhhcccceEEEeeeEEeeeccccccCcee
Q psy13046 84 THPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGK-VKRKISCIFIIIVRISCECILLKYRSAST 158 (365)
Q Consensus 84 ~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~-l~~~~~~~~~~~~~~~~~~~l~~~~~gk~ 158 (365)
+||.|.+++|++++++..++.++++++.+. ...+.+++.+++++. ++.++.+.. +.+.+.+|++.+||+
T Consensus 451 ~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~~~~~~~l~~~l~~~~L~~~~~P~~-----i~~v~~lP~t~~GKi 520 (539)
T 1mdb_A 451 AHPAVHDAAMVSMPDQFLGERSCVFIIPRD-EAPKAAELKAFLRERGLAAYKIPDR-----VEFVESFPQTGVGKV 520 (539)
T ss_dssp TSTTEEEEEEEEEEETTTEEEEEEEEEESS-SCCCHHHHHHHHHHTTCCGGGSCSE-----EEECSSCCBCTTSCB
T ss_pred hCCCcceEEEEeccccccCceEEEEEEECC-CCCCHHHHHHHHHhCCCCcccCCCE-----EEEeccCCCCCCcCE
Confidence 999999999999999888888999988874 346778999999987 887776643 345678999999998
No 39
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=99.84 E-value=6.1e-21 Score=187.51 Aligned_cols=144 Identities=17% Similarity=0.172 Sum_probs=128.4
Q ss_pred ccCCCCCCceEEEEecCchhhhhhcc------c-ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHh
Q psy13046 11 NQHSSRQKKAIHFRHFDSFLLFVELC------L-LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ 83 (365)
Q Consensus 11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~-~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~ 83 (365)
+.++.++.|||+++++.++.+|+++. | ..+||+|||++++|+||+++|.||.||+||++|++|+|.+||++|.
T Consensus 382 ~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~ 461 (548)
T 2d1s_A 382 KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLL 461 (548)
T ss_dssp CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHH
T ss_pred ccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHH
Confidence 46677889999999999999999873 4 6899999999999999999999999999999999999999999999
Q ss_pred cCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046 84 THPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST 158 (365)
Q Consensus 84 ~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~ 158 (365)
+||.|.+++|++++++..++.+.++|+++++...+.+++.+++++++..+..+. ..+.+.+.+|++.+||+
T Consensus 462 ~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~p~----~~i~~v~~lP~t~~GKi 532 (548)
T 2d1s_A 462 QHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLR----GGVRFVDEVPKGLTGKI 532 (548)
T ss_dssp TSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGSCT----TCEEECSSCCBCTTSCB
T ss_pred hCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCCCCHHHHHHHHHHhcccccccc----ccEEEccCCCCCCcchh
Confidence 999999999999999888889999999887766788899999999988776664 13445678999999998
No 40
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=99.84 E-value=1.4e-20 Score=185.99 Aligned_cols=143 Identities=23% Similarity=0.232 Sum_probs=116.2
Q ss_pred ccCCCCCCceEEEEe-----cCchhhhhhcc------cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHH
Q psy13046 11 NQHSSRQKKAIHFRH-----FDSFLLFVELC------LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIE 79 (365)
Q Consensus 11 ~~~~~~~~g~~~~~~-----~~~~~~y~~~~------~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie 79 (365)
+.++.++.|||++++ ...+.+|+++. |..+||+|||++++|+||+++|.||.||+||++|++|+|.+||
T Consensus 412 ~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE 491 (580)
T 3etc_A 412 RLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVE 491 (580)
T ss_dssp CBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHH
T ss_pred CCCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHH
Confidence 456778999999997 67889999873 6789999999999999999999999999999999999999999
Q ss_pred HHHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCC---HHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCc
Q psy13046 80 EFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN---ADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSA 156 (365)
Q Consensus 80 ~~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~---~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g 156 (365)
++|.+||.|.+++|++++++..++.+.++|++.++.... .+++.+++++.++.++.++. +.+.+.+|++.+|
T Consensus 492 ~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~-----i~~v~~lP~t~sG 566 (580)
T 3etc_A 492 SALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRI-----IEFVPELPKTISG 566 (580)
T ss_dssp HHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHSCGGGCCSE-----EEEECC-------
T ss_pred HHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCccCCeE-----EEEeCCCCCCCCc
Confidence 999999999999999999998899999999998765433 35788888888877766643 4466789999999
Q ss_pred ee
Q psy13046 157 ST 158 (365)
Q Consensus 157 k~ 158 (365)
|+
T Consensus 567 Ki 568 (580)
T 3etc_A 567 KI 568 (580)
T ss_dssp --
T ss_pred CC
Confidence 98
No 41
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=99.84 E-value=1.1e-20 Score=184.43 Aligned_cols=135 Identities=24% Similarity=0.332 Sum_probs=121.5
Q ss_pred CceEEEEecCchhhhhhcc------cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhcCCCcceE
Q psy13046 18 KKAIHFRHFDSFLLFVELC------LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEA 91 (365)
Q Consensus 18 ~g~~~~~~~~~~~~y~~~~------~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~~~~V~~~ 91 (365)
.|||+++++.++.+|+++. |..+||+|||++++|+||+++|.||.||+||++|++|+|.+||++|.+||.|.++
T Consensus 362 ~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~ 441 (517)
T 3r44_A 362 EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEV 441 (517)
T ss_dssp EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEE
T ss_pred CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEE
Confidence 6999999999999999873 6789999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046 92 YAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST 158 (365)
Q Consensus 92 ~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~ 158 (365)
+|++++++..++.+.+++ ..++...+.+++.+++++.++.++.+.. +.+.+.+|++.+||+
T Consensus 442 ~Vv~~~~~~~g~~~~a~v-~~~~~~~~~~~l~~~l~~~L~~~~~P~~-----i~~v~~lP~t~~GKi 502 (517)
T 3r44_A 442 AVIGLPDEKWGEIAAAIV-VADQNEVSEQQIVEYCGTRLARYKLPKK-----VIFAEAIPRNPTGKI 502 (517)
T ss_dssp EEEEEEETTTEEEEEEEE-EECTTTCCHHHHHHHHHHHSCGGGSCSE-----EEECSCCCBCTTCCB
T ss_pred EEEeccccccCceEEEEE-ECCCCCCCHHHHHHHHHHhCCCCCCCCE-----EEEECCCCCCCCcCc
Confidence 999999988888887777 5555567789999999999988877743 346678999999998
No 42
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=99.84 E-value=3.4e-21 Score=189.41 Aligned_cols=143 Identities=22% Similarity=0.251 Sum_probs=99.3
Q ss_pred ccCCCCCCceEEEEecCchhhhhhcc------c---ccc--cEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHH
Q psy13046 11 NQHSSRQKKAIHFRHFDSFLLFVELC------L---LLF--PFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIE 79 (365)
Q Consensus 11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~---~~~--~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie 79 (365)
+.++.|+.|||+++|+.++.+|+++. | ..+ ||+|||++++|+||+++|.||.||+||++|++|+|.+||
T Consensus 376 ~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE 455 (549)
T 3g7s_A 376 RELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELE 455 (549)
T ss_dssp CEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHH
T ss_pred cCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHH
Confidence 45677889999999999999999873 2 456 999999999999999999999999999999999999999
Q ss_pred HHHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCC--CCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCce
Q psy13046 80 EFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKEN--AKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAS 157 (365)
Q Consensus 80 ~~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~--~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk 157 (365)
++|.+||.|.+++|++++++..++.+.++++++++ ...+.+++.++++++++.++.+. .+.+.+.+|++.+||
T Consensus 456 ~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~l~~~l~~~L~~~~~P~-----~i~~v~~lP~t~~GK 530 (549)
T 3g7s_A 456 ALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVR-----EVEFVEELPRTASGK 530 (549)
T ss_dssp HHHTTSTTEEEEEEECCCC------CEEEEEECSTTTTSCCHHHHHHHHHTTCC-----C-----CCCEEEECC------
T ss_pred HHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCccCcCCHHHHHHHHHHhccCcccce-----EEEEeccCCCCCCcC
Confidence 99999999999999999998888889999998876 55678899999999888766653 334557799999999
Q ss_pred e
Q psy13046 158 T 158 (365)
Q Consensus 158 ~ 158 (365)
+
T Consensus 531 i 531 (549)
T 3g7s_A 531 L 531 (549)
T ss_dssp -
T ss_pred E
Confidence 8
No 43
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=99.83 E-value=3.6e-20 Score=180.23 Aligned_cols=138 Identities=23% Similarity=0.246 Sum_probs=118.5
Q ss_pred CCCceEEEEecCchhhhhhcc------c-ccccEecCceEEEecCCcEEEEeec-CcEEEECCEEechHhHHHHHhcCCC
Q psy13046 16 RQKKAIHFRHFDSFLLFVELC------L-LLFPFLSRDQFVLREDGYGQVVGRI-KDMIIRGGENIYPKEIEEFIQTHPN 87 (365)
Q Consensus 16 ~~~g~~~~~~~~~~~~y~~~~------~-~~~~~~tgDl~~~~~~g~~~i~GR~-~d~i~~~G~~v~p~~ie~~l~~~~~ 87 (365)
++.|||+++++..+.+|+++. | ..+||+|||++++|+||+++|.||. |++||++|++|+|.+||++|.+||.
T Consensus 351 g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~ 430 (505)
T 3nyq_A 351 ESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPE 430 (505)
T ss_dssp CCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTT
T ss_pred CceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcC
Confidence 689999999999999999873 4 6899999999999999999999998 5999999999999999999999999
Q ss_pred cceEEEEEeeCCCCCceEEEEEEEcC-CCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046 88 VLEAYAYGVPDERMGEEVGISIKLKE-NAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST 158 (365)
Q Consensus 88 V~~~~v~~vp~~~~~~~~~~~v~~~~-~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~ 158 (365)
|.+++|++++++..++.+++++++.+ ....+.+++.++++++++.++.+.. +.+.+.+|++.+||+
T Consensus 431 V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~~~~~l~~~l~~~L~~~~~P~~-----i~~v~~lP~t~~GKi 497 (505)
T 3nyq_A 431 VREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHVAARLAPHKRPRV-----VRYLDAVPRNDMGKI 497 (505)
T ss_dssp EEEEEEEEEEETTTEEEEEEEEEESSTTSCCCHHHHHHHHHHHTCGGGSCSE-----EEECSCCCC------
T ss_pred ccEEEEEeeECCCCCcEEEEEEEECCCCCCCCHHHHHHHHHhhCCCCcCccE-----EEEECCCCCCCCcCe
Confidence 99999999999888999999999876 4456778999999999988887753 346688999999998
No 44
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=99.83 E-value=4.4e-20 Score=181.93 Aligned_cols=141 Identities=11% Similarity=0.048 Sum_probs=123.8
Q ss_pred ccCCCCCCceEEEEecCchhhhhhcc------c-c------cccEecCceEEEecCCcEEEEeecCcEEEECCEEechHh
Q psy13046 11 NQHSSRQKKAIHFRHFDSFLLFVELC------L-L------LFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 77 (365)
Q Consensus 11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~-~------~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ 77 (365)
+.++.++.|||+++|+.+|.||+++. | . .+||+|||++++|+||+++|.||.||+||++|++|+|.+
T Consensus 365 ~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~e 444 (563)
T 1amu_A 365 QLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEE 444 (563)
T ss_dssp CBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHH
T ss_pred CCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHH
Confidence 45677889999999999999999773 3 1 359999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCce
Q psy13046 78 IEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAS 157 (365)
Q Consensus 78 ie~~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk 157 (365)
||++|.+||.|.+++|++++++..++.++++++... ..+.+++.+++++.++.++.+.. +.+.+.+|++.+||
T Consensus 445 IE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~--~~~~~~l~~~l~~~L~~y~~P~~-----i~~v~~lP~t~~GK 517 (563)
T 1amu_A 445 VESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEK--HIPLEQLRQFSSEELPTYMIPSY-----FIQLDKMPLTSNGK 517 (563)
T ss_dssp HHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESS--CCCHHHHHHHHHHHSCGGGSCSE-----EEECSSCCBCTTSS
T ss_pred HHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCC--CCCHHHHHHHHHhhCchhhCCcE-----EEEecccCCCCCcC
Confidence 999999999999999999999888888888888764 35678999999999988776643 34667899999999
Q ss_pred e
Q psy13046 158 T 158 (365)
Q Consensus 158 ~ 158 (365)
+
T Consensus 518 i 518 (563)
T 1amu_A 518 I 518 (563)
T ss_dssp B
T ss_pred h
Confidence 9
No 45
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=99.83 E-value=3.6e-20 Score=185.59 Aligned_cols=143 Identities=18% Similarity=0.246 Sum_probs=123.2
Q ss_pred ccCCCCCCceEEEEe--cCchhhhhhc-------ccc--cccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHH
Q psy13046 11 NQHSSRQKKAIHFRH--FDSFLLFVEL-------CLL--LFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIE 79 (365)
Q Consensus 11 ~~~~~~~~g~~~~~~--~~~~~~y~~~-------~~~--~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie 79 (365)
++++.++.|||++++ +..+.+|++. +|. .+||+|||++++|+||+++|.||.||+||++|++|+|.|||
T Consensus 454 ~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE 533 (652)
T 1pg4_A 454 HPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIE 533 (652)
T ss_dssp CBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHH
T ss_pred CCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHH
Confidence 455667889999999 6899999976 232 68999999999999999999999999999999999999999
Q ss_pred HHHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCC---HHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCc
Q psy13046 80 EFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN---ADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSA 156 (365)
Q Consensus 80 ~~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~---~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g 156 (365)
++|.+||.|.+++|++++++..++.++++|+++++...+ .+++.+++++.+..++.+.. +.+.+.+|++.+|
T Consensus 534 ~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~-----i~~v~~lP~T~sG 608 (652)
T 1pg4_A 534 SALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDV-----LHWTDSLPKTRSG 608 (652)
T ss_dssp HHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSE-----EEECSCCCBCTTS
T ss_pred HHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCeE-----EEEcCCCCCCCCc
Confidence 999999999999999999988889999999998765444 35778888887777666643 4466789999999
Q ss_pred ee
Q psy13046 157 ST 158 (365)
Q Consensus 157 k~ 158 (365)
|+
T Consensus 609 Ki 610 (652)
T 1pg4_A 609 KI 610 (652)
T ss_dssp CB
T ss_pred cc
Confidence 99
No 46
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=99.82 E-value=3.9e-20 Score=182.58 Aligned_cols=143 Identities=24% Similarity=0.234 Sum_probs=122.0
Q ss_pred ccCCCCCCceEEEE-----ecCchhhhhhcc------cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHH
Q psy13046 11 NQHSSRQKKAIHFR-----HFDSFLLFVELC------LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIE 79 (365)
Q Consensus 11 ~~~~~~~~g~~~~~-----~~~~~~~y~~~~------~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie 79 (365)
+.++.|+.|||+++ ++.++.+|+++. |..+||+|||++++|+||+++|.||.||+||++|++|+|.+||
T Consensus 393 ~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE 472 (570)
T 3c5e_A 393 NVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVE 472 (570)
T ss_dssp CBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHH
T ss_pred CCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhcCCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHH
Confidence 56677889999999 889999999873 5689999999999999999999999999999999999999999
Q ss_pred HHHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCC-CC----HHHHHHHHHhhhhhcccceEEEeeeEEeeecccccc
Q psy13046 80 EFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK-LN----ADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYR 154 (365)
Q Consensus 80 ~~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~-~~----~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 154 (365)
++|.+||.|.+++|++++++..++.+.++|++.++.. .. .+++.+++++.++.++.+.. +.+.+.+|++.
T Consensus 473 ~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~-----i~~v~~lP~t~ 547 (570)
T 3c5e_A 473 NALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRK-----IEFVLNLPKTV 547 (570)
T ss_dssp HHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSE-----EEEESCCCBCT
T ss_pred HHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccCcchHHHHHHHHHHHHhhCccccCCcE-----EEEeccCCCCC
Confidence 9999999999999999999888888999998876431 12 35677777777776666543 44567899999
Q ss_pred Ccee
Q psy13046 155 SAST 158 (365)
Q Consensus 155 ~gk~ 158 (365)
+||+
T Consensus 548 ~GKi 551 (570)
T 3c5e_A 548 TGKI 551 (570)
T ss_dssp TCCB
T ss_pred CcCC
Confidence 9998
No 47
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=99.81 E-value=9.4e-20 Score=177.11 Aligned_cols=137 Identities=18% Similarity=0.249 Sum_probs=115.7
Q ss_pred CCCCceEEEEecCchhhhhhcc-----cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhcCCCcc
Q psy13046 15 SRQKKAIHFRHFDSFLLFVELC-----LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVL 89 (365)
Q Consensus 15 ~~~~g~~~~~~~~~~~~y~~~~-----~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~~~~V~ 89 (365)
.++.|||+++++..+.+|++.. |..+||+|||++++|+||+++|.||.||+||++|++|+|.+||+++.+||.|.
T Consensus 345 ~~~~GEl~v~g~~~~~gY~~~~~~t~~~~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~ 424 (501)
T 3ipl_A 345 KEGHGELMIKGANVMNGYLYPTDLTGTFENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGIS 424 (501)
T ss_dssp SSCCEEEEEESTTSCSCCSBSTTCCCSEETTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEE
T ss_pred CCCccEEEEeccchhhhhCcChhhcchhcCCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCcc
Confidence 4568999999999999999774 46799999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046 90 EAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST 158 (365)
Q Consensus 90 ~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~ 158 (365)
+++|++++++..++.+.++++... ..+.+++.++++++++.++.+.. +.+.+.+|++.+||+
T Consensus 425 ~~~vv~~~~~~~g~~~~a~v~~~~--~~~~~~l~~~l~~~L~~~~~P~~-----i~~v~~lP~t~~GKi 486 (501)
T 3ipl_A 425 DAVCVGHPDDTWGQVPKLYFVSES--DISKAQLIAYLSKHLAKYKVPKH-----FEKVDTLPYTSTGKL 486 (501)
T ss_dssp EEEEEEEEETTTEEEEEEEEEESS--CCCHHHHHHHHHHHSCGGGSCSE-----EEECSSCC-------
T ss_pred EEEEEEEecccCCceEEEEEEeCC--CCCHHHHHHHHHhhCccccCCCE-----EEEecccCCCCCCCE
Confidence 999999999888888888887643 46788999999999988777643 446688999999998
No 48
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=99.81 E-value=5.7e-21 Score=186.06 Aligned_cols=143 Identities=24% Similarity=0.289 Sum_probs=47.9
Q ss_pred ccCCCCCCceEEEEecCchhhhhhcc------cccccEecCceEEEecCCcEEEEeec--CcEEEECCEEechHhHHHHH
Q psy13046 11 NQHSSRQKKAIHFRHFDSFLLFVELC------LLLFPFLSRDQFVLREDGYGQVVGRI--KDMIIRGGENIYPKEIEEFI 82 (365)
Q Consensus 11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~~~~~~~tgDl~~~~~~g~~~i~GR~--~d~i~~~G~~v~p~~ie~~l 82 (365)
++++.|+.|||+++++.++.+|++.. |..+||+|||++++|+||+++|.||. ||+||++|++|+|.+||+++
T Consensus 340 ~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l 419 (509)
T 3ivr_A 340 RPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGAL 419 (509)
T ss_dssp CBCCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECTTSCEEEEEEC----------------------
T ss_pred CCCCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHH
Confidence 56678899999999999999999873 67899999999999999999999999 99999999999999999999
Q ss_pred hcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046 83 QTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST 158 (365)
Q Consensus 83 ~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~ 158 (365)
.+||.|.+++|++++++..++.+.+++++.++...+.+++.+++++.++.++.+. .+.+.+.+|++.+||+
T Consensus 420 ~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~L~~~~~P~-----~i~~v~~lP~t~~GKi 490 (509)
T 3ivr_A 420 KQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAEFVASLIARYKKPK-----HVVFVEALPKDAKGAI 490 (509)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred HhCCCceeEEEEeccccccCcEEEEEEEeCCCCCCCHHHHHHHHHhhCcccCCCc-----EEEEecCCCCCCCCCc
Confidence 9999999999999999888888999998887766677888889988887766553 3445678999999998
No 49
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=99.81 E-value=1.6e-19 Score=175.93 Aligned_cols=142 Identities=13% Similarity=-0.022 Sum_probs=119.9
Q ss_pred ccCCCCCCceEEEEecCchhhhhhcc------c--ccc--cEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHH
Q psy13046 11 NQHSSRQKKAIHFRHFDSFLLFVELC------L--LLF--PFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEE 80 (365)
Q Consensus 11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~--~~~--~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~ 80 (365)
++++.++.|||+++|+.++.+|+++. | ..+ ||+|||++++ +||+++|.||.||+||++|++|+|.+||+
T Consensus 337 ~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~ 415 (511)
T 3e7w_A 337 QPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEF 415 (511)
T ss_dssp CBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHH
T ss_pred CCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHH
Confidence 56678899999999999999999873 2 223 7999999999 59999999999999999999999999999
Q ss_pred HHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCH----HHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCc
Q psy13046 81 FIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA----DDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSA 156 (365)
Q Consensus 81 ~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~----~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g 156 (365)
++.+||.|.+++|++++++..++.+.++++..++..... +++.+++++.++.++.+.. +.+.+.+|++.+|
T Consensus 416 ~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~-----~~~v~~lP~t~~G 490 (511)
T 3e7w_A 416 HVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPAYMIPRK-----FIYQDHIQMTANG 490 (511)
T ss_dssp HHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCSSHHHHHHHHHHHHHHHSCGGGSCSE-----EEECSCCCBCTTS
T ss_pred HHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccccchhhHHHHHHHHHHhhCchhhCCee-----EEEeccCCCCCCc
Confidence 999999999999999998888889999999887654443 4567777777766666543 4466889999999
Q ss_pred ee
Q psy13046 157 ST 158 (365)
Q Consensus 157 k~ 158 (365)
|+
T Consensus 491 Ki 492 (511)
T 3e7w_A 491 KI 492 (511)
T ss_dssp CB
T ss_pred Cc
Confidence 98
No 50
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=99.81 E-value=9.2e-20 Score=177.67 Aligned_cols=142 Identities=11% Similarity=0.006 Sum_probs=119.8
Q ss_pred ccCCCCCCceEEEEecCchhhhhhcc------c----ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHH
Q psy13046 11 NQHSSRQKKAIHFRHFDSFLLFVELC------L----LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEE 80 (365)
Q Consensus 11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~----~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~ 80 (365)
+.+++++.|||+++|+.++.+|+++. | ..+||+|||++++ +||+++|.||.||+||++|++|+|.+||+
T Consensus 338 ~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~ 416 (512)
T 3fce_A 338 TIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEH 416 (512)
T ss_dssp CBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHH
T ss_pred CCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHH
Confidence 45677899999999999999999873 2 3569999999999 79999999999999999999999999999
Q ss_pred HHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCH----HHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCc
Q psy13046 81 FIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA----DDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSA 156 (365)
Q Consensus 81 ~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~----~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g 156 (365)
+|.+||.|.+++|+++++...++.+.++++..+....+. +++.+++++.++.++.+. .+.+.+.+|++.+|
T Consensus 417 ~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~-----~~~~~~~lP~t~~G 491 (512)
T 3fce_A 417 HLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPR-----KFMYQSSIPMTPNG 491 (512)
T ss_dssp HHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCCSSHHHHHHHHHHHHHTTSCGGGSCS-----EEEECSCCCBCTTS
T ss_pred HHHhCCCcceEEEEEEecCCCceEEEEEEecCCccccchhhhHHHHHHHHHhhCchhcCCe-----EEEEecccCCCCCc
Confidence 999999999999999998877888889988876544443 356666777776666554 34467889999999
Q ss_pred ee
Q psy13046 157 ST 158 (365)
Q Consensus 157 k~ 158 (365)
|+
T Consensus 492 Ki 493 (512)
T 3fce_A 492 KV 493 (512)
T ss_dssp SB
T ss_pred Ch
Confidence 98
No 51
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=99.81 E-value=2.9e-19 Score=177.97 Aligned_cols=141 Identities=27% Similarity=0.281 Sum_probs=125.0
Q ss_pred ccCCCCCCceEEEEecCchhhhhhcc------c-ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHh
Q psy13046 11 NQHSSRQKKAIHFRHFDSFLLFVELC------L-LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ 83 (365)
Q Consensus 11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~-~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~ 83 (365)
++++.|+.|||+++|+.+++||+++. | .++||+|||++++++||+++|.||.||+||++|++|+|.+||++|.
T Consensus 375 ~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~ 454 (617)
T 3rg2_A 375 NPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLL 454 (617)
T ss_dssp CBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHT
T ss_pred CCCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHH
Confidence 56788899999999999999999873 4 6899999999999999999999999999999999999999999999
Q ss_pred cCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHh-hhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046 84 THPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKG-KVKRKISCIFIIIVRISCECILLKYRSAST 158 (365)
Q Consensus 84 ~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~-~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~ 158 (365)
+||.|.+++|++.+++..++.++++++..+ ..+.+++.+++++ .++.++-+.. +.+.+.+|++.+||+
T Consensus 455 ~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~--~~~~~~l~~~l~~~~lp~~~vP~~-----~~~v~~lP~t~~GKi 523 (617)
T 3rg2_A 455 RHPAVIYAALVSMEDELMGEKSCAYLVVKE--PLRAVQVRRFLREQGIAEFKLPDR-----VECVDSLPLTAVGKV 523 (617)
T ss_dssp TSTTEEEEEEEEEEETTTEEEEEEEEEESS--CCCHHHHHHHHHTTTCCGGGSCSE-----EEECSCCCBCTTSSB
T ss_pred hCCCeeEEEEEeccCcccCeeEEEEEEeCC--CCCHHHHHHHHHhCCCccccCCcE-----EEEecccCCCCCCCC
Confidence 999999999999999888888888888876 3567889999988 5777776643 335678999999999
No 52
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=99.81 E-value=7.5e-21 Score=187.78 Aligned_cols=143 Identities=15% Similarity=0.083 Sum_probs=44.9
Q ss_pred ccCCCCCCceEEEEecCchhhhhhcc------c-c--------cccEecCceEEEecCCcEEEEeecCcEEEECCEEech
Q psy13046 11 NQHSSRQKKAIHFRHFDSFLLFVELC------L-L--------LFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYP 75 (365)
Q Consensus 11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~-~--------~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p 75 (365)
+.++.|+.|||+++|+.+|.+|+++. | . .+||+|||++++|+||+++|.||+||+||++|+||+|
T Consensus 402 ~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p 481 (570)
T 4gr5_A 402 KPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEP 481 (570)
T ss_dssp CBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC--------------
T ss_pred CCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCH
Confidence 45677889999999999999999862 2 1 3799999999999999999999999999999999999
Q ss_pred HhHHHHHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCC-CCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeecccccc
Q psy13046 76 KEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKEN-AKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYR 154 (365)
Q Consensus 76 ~~ie~~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~-~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 154 (365)
.+||++|.+||.|.+++|++++++..++.++++++..+. ...+.+++.++++++++.++.+. .+.+.+.+|++.
T Consensus 482 ~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~l~~~l~~~l~~~~~P~-----~i~~v~~lP~t~ 556 (570)
T 4gr5_A 482 GEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAPPDAAELRRHVAEALPAYMVPV-----ECVPVDELPRTP 556 (570)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCCcCHHHHHHHHHhhCccccCCc-----EEEEcccCCCCC
Confidence 999999999999999999999988788888888887653 34556788888888877665553 344567899999
Q ss_pred Ccee
Q psy13046 155 SAST 158 (365)
Q Consensus 155 ~gk~ 158 (365)
+||+
T Consensus 557 ~GKi 560 (570)
T 4gr5_A 557 NGKL 560 (570)
T ss_dssp ----
T ss_pred CcCc
Confidence 9998
No 53
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=99.80 E-value=1.2e-20 Score=185.25 Aligned_cols=142 Identities=26% Similarity=0.238 Sum_probs=48.7
Q ss_pred ccCCCCCCceEEEEecCchhhhhhcc------c-ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHh
Q psy13046 11 NQHSSRQKKAIHFRHFDSFLLFVELC------L-LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ 83 (365)
Q Consensus 11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~-~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~ 83 (365)
+.++.|+.|||+++++.++.+|++.. | ..+||+|||++++|+||+++|.||.||+||++|++|+|.+||++|.
T Consensus 380 ~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~ 459 (544)
T 3o83_A 380 REVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLIL 459 (544)
T ss_dssp CBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC--------------------
T ss_pred CCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHH
Confidence 55678899999999999999999873 4 6899999999999999999999999999999999999999999999
Q ss_pred cCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHh-hhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046 84 THPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKG-KVKRKISCIFIIIVRISCECILLKYRSAST 158 (365)
Q Consensus 84 ~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~-~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~ 158 (365)
+||.|.+++|++++++..++.++++++..+ ...+.+.+.+++++ .++.++.+ ..+.+.+.+|++.+||+
T Consensus 460 ~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~~~~~~~l~~~~~~~~l~~~~~P-----~~i~~v~~lP~t~~GKi 529 (544)
T 3o83_A 460 LHPEVMHAALVAIVDEQFGEKSCAFIVSRN-PELKAVVLRRHLMELGIAQYKLP-----DQIKLIESLPLTAVGKV 529 (544)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred hCCCccEEEEEeccCCCCCceEEEEEEeCC-CCCCHHHHHHHHHhCCCCcccCC-----cEEEEeccCCCCCCCCC
Confidence 999999999999999888888888888765 33445667777776 56655544 34445678999999998
No 54
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=99.80 E-value=8.9e-21 Score=186.45 Aligned_cols=144 Identities=19% Similarity=0.187 Sum_probs=44.7
Q ss_pred ccCCCCCCceEEEEecCchhhhhhcc------c-ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHh
Q psy13046 11 NQHSSRQKKAIHFRHFDSFLLFVELC------L-LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ 83 (365)
Q Consensus 11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~-~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~ 83 (365)
+.++.++.|||+++|+.++.+|+++. | ..+||+|||++++|+||+++|.||.||+||++|++|+|.+||++|.
T Consensus 380 ~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~ 459 (550)
T 3rix_A 380 KTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILL 459 (550)
T ss_dssp CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC------------------------
T ss_pred cCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHH
Confidence 56677899999999999999999873 4 6899999999999999999999999999999999999999999999
Q ss_pred cCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046 84 THPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST 158 (365)
Q Consensus 84 ~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~ 158 (365)
+||.|.+++|++++++..++.++++|++.++...+.+++.+++++++..+..+. ..+.+.+.+|++.+||+
T Consensus 460 ~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~~~----~~i~~v~~lP~t~~GKi 530 (550)
T 3rix_A 460 QHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLR----GGVVFVDEVPKGLTGKL 530 (550)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred hCCCcceEEEEEeecCCCCceEEEEEEecCCCCCCHHHHHHHHHHhcccccccC----CceEEEeecCCCCCcce
Confidence 999999999999999888899999998887766667788888887776543221 23445678999999998
No 55
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=99.79 E-value=1.2e-19 Score=177.14 Aligned_cols=143 Identities=15% Similarity=0.052 Sum_probs=111.0
Q ss_pred ccCCCCCCceEEEEecCchhhhhhcc------c----ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHH
Q psy13046 11 NQHSSRQKKAIHFRHFDSFLLFVELC------L----LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEE 80 (365)
Q Consensus 11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~----~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~ 80 (365)
+.++.++.|||+++++.++.+|+++. | ..+||+|||++++|+||+++|.||.||+||++|++|+|.+||+
T Consensus 341 ~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~ 420 (521)
T 3l8c_A 341 KELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQ 420 (521)
T ss_dssp CBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHH
T ss_pred CCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHH
Confidence 45677889999999999999999873 2 3579999999999999999999999999999999999999999
Q ss_pred HHhcCCCcceEEEEEeeCCCC-CceEEEEEEEcCCCCC--C-----HHHHHHHHHhhhhhcccceEEEeeeEEeeecccc
Q psy13046 81 FIQTHPNVLEAYAYGVPDERM-GEEVGISIKLKENAKL--N-----ADDIRTFCKGKVKRKISCIFIIIVRISCECILLK 152 (365)
Q Consensus 81 ~l~~~~~V~~~~v~~vp~~~~-~~~~~~~v~~~~~~~~--~-----~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~ 152 (365)
+|.+||.|.++++++.+++.. ++.+.++++++++... + .+++.+++++.++.++.+. .+.+.+.+|+
T Consensus 421 ~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~-----~i~~v~~lP~ 495 (521)
T 3l8c_A 421 QLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPS-----KFLYRDSLPL 495 (521)
T ss_dssp HHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGGSCGGGSCS-----EEEECSSCCB
T ss_pred HHHcCCCcceEEEEEeecCCCCceEEEEEEEecCccccccccchhhHHHHHHHHHhhCccccCCe-----EEEEecccCC
Confidence 999999999999999886543 5778888888875321 1 3456666666666665553 3446788999
Q ss_pred ccCcee
Q psy13046 153 YRSAST 158 (365)
Q Consensus 153 ~~~gk~ 158 (365)
+.+||+
T Consensus 496 t~~GKi 501 (521)
T 3l8c_A 496 TPNGKI 501 (521)
T ss_dssp CTTSSB
T ss_pred CCCcCc
Confidence 999998
No 56
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=99.79 E-value=4.2e-20 Score=181.29 Aligned_cols=136 Identities=18% Similarity=0.125 Sum_probs=84.3
Q ss_pred CCceEEEEecCchhhhhhcc------c-ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhcCCCcc
Q psy13046 17 QKKAIHFRHFDSFLLFVELC------L-LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVL 89 (365)
Q Consensus 17 ~~g~~~~~~~~~~~~y~~~~------~-~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~~~~V~ 89 (365)
+.|||+++|+.++.+|+++. | .++||+|||++++|+||+++|.||.||+||++|++|+|.+||++|.+||.|.
T Consensus 382 ~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~ 461 (541)
T 1v25_A 382 ALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVK 461 (541)
T ss_dssp CCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC--------
T ss_pred cceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCce
Confidence 58999999999999999873 4 3899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHh-hhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046 90 EAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKG-KVKRKISCIFIIIVRISCECILLKYRSAST 158 (365)
Q Consensus 90 ~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~-~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~ 158 (365)
+++|++++++..++.+.++|+++ +...+.+++.+++++ .++.++.+.. +.+.+.+|++.+||+
T Consensus 462 ~a~Vv~~~~~~~~~~~~a~vv~~-~~~~~~~~l~~~~~~~~L~~~~~P~~-----i~~v~~lP~t~~GKi 525 (541)
T 1v25_A 462 EAAVVAIPHPKWQERPLAVVVPR-GEKPTPEELNEHLLKAGFAKWQLPDA-----YVFAEEIPRTSAGKF 525 (541)
T ss_dssp --CEEEEECSSSSEEEEECC--------------------CCCTTTSCSB-----C--------------
T ss_pred EEEEEEecCCCcCceEEEEEEEC-CCCCCHHHHHHHHHhccCccccCCcE-----EEEeCCCCCCCccCe
Confidence 99999999988888888888876 333455778888887 6776665533 335567999999998
No 57
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=99.79 E-value=3.3e-19 Score=174.41 Aligned_cols=142 Identities=20% Similarity=0.177 Sum_probs=115.9
Q ss_pred ccCCCCCCceEEEEecCchhhhhhcc------cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhc
Q psy13046 11 NQHSSRQKKAIHFRHFDSFLLFVELC------LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT 84 (365)
Q Consensus 11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~ 84 (365)
+++++|+.|||+++++..+.+|++.. |..+||+|||++++|+||+++|.||.||+||++|++|+|.+||+++.+
T Consensus 371 ~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 450 (529)
T 2v7b_A 371 HAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQ 450 (529)
T ss_dssp CBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTT
T ss_pred CCCCCCCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHh
Confidence 45678899999999999999999873 568999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEEEeeCCCCCceEEEEEEEcCCCCC---CHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046 85 HPNVLEAYAYGVPDERMGEEVGISIKLKENAKL---NADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST 158 (365)
Q Consensus 85 ~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~---~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~ 158 (365)
||.|.+++|+++ ++..++.+.+++++.++... ..+++.+++++.++.+..+. .+.+.+.+|++.+||+
T Consensus 451 ~p~V~~~~vv~~-~~~~~~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~-----~i~~v~~lP~t~~GKi 521 (529)
T 2v7b_A 451 HDAVLEAAVVGV-DHGGLVKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPR-----DIVFVDDLPKTATGKI 521 (529)
T ss_dssp STTEEEEEEEEE-EETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHTTSCTTTSCS-----EEEEESCCCBCTTSCB
T ss_pred CCCcceEEEEEe-cCCCceEEEEEEEecCCCCcchhHHHHHHHHHHhhcchhhCCe-----EEEEeccCCCCCccch
Confidence 999999999999 55567788888888765321 23567888888777766553 3345678999999998
No 58
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=99.78 E-value=2.6e-19 Score=179.60 Aligned_cols=142 Identities=19% Similarity=0.188 Sum_probs=117.8
Q ss_pred cCCC-CCCceEEEEe--cCchhhhhhcc-------cc--cccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHH
Q psy13046 12 QHSS-RQKKAIHFRH--FDSFLLFVELC-------LL--LFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIE 79 (365)
Q Consensus 12 ~~~~-~~~g~~~~~~--~~~~~~y~~~~-------~~--~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie 79 (365)
+++. ++.|||++++ +..+.+|+++. +. .+||+|||++++|+||+++|.||.||+||++|++|+|.|||
T Consensus 463 ~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE 542 (663)
T 1ry2_A 463 ELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIE 542 (663)
T ss_dssp CEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHH
T ss_pred cCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHH
Confidence 3344 6789999999 58999999772 32 68999999999999999999999999999999999999999
Q ss_pred HHHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCC---C-C------HHHHHHHHHhhhhhcccceEEEeeeEEeeec
Q psy13046 80 EFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK---L-N------ADDIRTFCKGKVKRKISCIFIIIVRISCECI 149 (365)
Q Consensus 80 ~~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~---~-~------~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~ 149 (365)
++|.+||.|.+++|++++++..++.++++|+++++.. . + .+++.+++++.+..++.+.. +.+.+.
T Consensus 543 ~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~-----i~~v~~ 617 (663)
T 1ry2_A 543 AAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKL-----IILVDD 617 (663)
T ss_dssp HHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSE-----EEECSC
T ss_pred HHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeE-----EEEcCC
Confidence 9999999999999999999888889999999876533 1 1 46777778877777666643 446678
Q ss_pred cccccCcee
Q psy13046 150 LLKYRSAST 158 (365)
Q Consensus 150 l~~~~~gk~ 158 (365)
+|++.+||+
T Consensus 618 lP~T~sGKi 626 (663)
T 1ry2_A 618 LPKTRSGKI 626 (663)
T ss_dssp CCBCTTSCB
T ss_pred CCCCCccCc
Confidence 999999999
No 59
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=99.77 E-value=1.1e-19 Score=190.29 Aligned_cols=143 Identities=18% Similarity=0.200 Sum_probs=49.7
Q ss_pred ccCCCCCCceEEEEecCchhhhhhcc------c-ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHh
Q psy13046 11 NQHSSRQKKAIHFRHFDSFLLFVELC------L-LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ 83 (365)
Q Consensus 11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~-~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~ 83 (365)
+.++.++.|||+++|+.++.+|+++. | ..+||+|||++++|+||+++|.||.||+||++|++|+|.+||.+|.
T Consensus 422 ~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~ 501 (979)
T 3tsy_A 422 DSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLI 501 (979)
T ss_dssp CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC-------------------
T ss_pred CCCCCCCccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHH
Confidence 56678899999999999999999873 4 6899999999999999999999999999999999999999999999
Q ss_pred cCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046 84 THPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST 158 (365)
Q Consensus 84 ~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~ 158 (365)
+||.|.+++|++++++..++.++++|+..++...+.+++.+++++.++.++.+. .+.+.+.+|++.+||+
T Consensus 502 ~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~-----~i~~v~~lP~t~~GKi 571 (979)
T 3tsy_A 502 GHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRIN-----KVFFTESIPKAPSGKI 571 (979)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred hCCCcceEEEEEecccCCCcEEEEEEEECCCCCCCHHHHHHHHHHhcccccCCe-----EEEEeCCcCcCCCCCe
Confidence 999999999999999888888889988877666667788888888887766553 3445678999999998
No 60
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=99.75 E-value=2.2e-19 Score=173.51 Aligned_cols=104 Identities=8% Similarity=-0.050 Sum_probs=83.0
Q ss_pred CCCccccccCCccccccccccccccc------------------------ccccceeeEeecCeeEEEEEcccceeccCC
Q psy13046 186 PGQSYFPCCCGKLRIHPFLEVVQSFE------------------------CRRYQVVLHIFEHLFLELVLYIVNSVLYNF 241 (365)
Q Consensus 186 ~~~~~~~~~yG~tE~~~~~~~~~~~~------------------------~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~ 241 (365)
++..+.+. ||+||++..++...... .....++|+|+| ++++|+|++++...+.
T Consensus 341 ~~~~~~~~-YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~- 417 (480)
T 3t5a_A 341 QERVIRPS-YWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCIECPD- 417 (480)
T ss_dssp CGGGEEEE-EEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTEECCT-
T ss_pred Chhhcccc-ccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCcCCCC-
Confidence 44567888 99999987665322110 134568999999 9999999875444433
Q ss_pred ceeeEE-eecCcccccccCCCcccccccC-----------CCCeeecCceEEEccCCcEEEEee
Q psy13046 242 KWINQV-SSQTMAMKSKRGLPARVKAPDR-----------KKCSQRPRYQFVLREDGYGQVVGR 293 (365)
Q Consensus 242 ~~~gei-~~g~~~~~gY~~~~~~~~~~~~-----------~~g~~~TGD~~~~~~~G~l~i~GR 293 (365)
+..||| ++||++|+|||++|+.|+++|. .+|||+|||+|++| ||+|+|+||
T Consensus 418 g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 418 GTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp TBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred CCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 578998 9999999999999999999885 47899999999997 999999998
No 61
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=99.74 E-value=5.9e-19 Score=173.92 Aligned_cols=143 Identities=12% Similarity=0.071 Sum_probs=46.0
Q ss_pred ccCCCCCCceEEEEecCchhhhhhcc------cccc--cEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHH
Q psy13046 11 NQHSSRQKKAIHFRHFDSFLLFVELC------LLLF--PFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFI 82 (365)
Q Consensus 11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~~~~--~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l 82 (365)
..++.++.|||+++++..|.+|++.. +..+ ||+|||++++|+||+++|.||.||+||++|+||+|.|||++|
T Consensus 367 ~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l 446 (562)
T 3ite_A 367 EHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVI 446 (562)
T ss_dssp CBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECTTSCEEEEEEC--------------------
T ss_pred CCCCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHH
Confidence 34677889999999999999999874 2344 999999999999999999999999999999999999999999
Q ss_pred hcC-CCcceEEEEEeeCCCCCceEEEEEEEcCCCCCC-------------HHHHHHHHHhhhhhcccceEEEeeeEEeee
Q psy13046 83 QTH-PNVLEAYAYGVPDERMGEEVGISIKLKENAKLN-------------ADDIRTFCKGKVKRKISCIFIIIVRISCEC 148 (365)
Q Consensus 83 ~~~-~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~-------------~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~ 148 (365)
.+| +.+.++++++++++..++...+.++...+.... .+++.++++++++.++.+. .+.+.+
T Consensus 447 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~-----~i~~v~ 521 (562)
T 3ite_A 447 RSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPD-----FIIPIS 521 (562)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhcCCCceeEEEEEecCCCCcceEEEEEEecccccccccccccccchhhHHHHHHHHHHhhCCcccCCc-----EEEEec
Confidence 998 777888888888877776655555544322211 2367777777776665553 344667
Q ss_pred ccccc-cCcee
Q psy13046 149 ILLKY-RSAST 158 (365)
Q Consensus 149 ~l~~~-~~gk~ 158 (365)
.+|++ .+||+
T Consensus 522 ~lP~t~~~GKi 532 (562)
T 3ite_A 522 FIPLRDTSAKT 532 (562)
T ss_dssp -----------
T ss_pred cCCCCCCCCcc
Confidence 78976 78888
No 62
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=99.74 E-value=1.4e-17 Score=178.66 Aligned_cols=141 Identities=16% Similarity=0.113 Sum_probs=123.9
Q ss_pred ccCCCCCCceEEEEecCchhhhhhcc------c-------ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHh
Q psy13046 11 NQHSSRQKKAIHFRHFDSFLLFVELC------L-------LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 77 (365)
Q Consensus 11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~-------~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ 77 (365)
++++.|+.|||+++|+.+++||++.. | ...||+|||++++++||.++|.||.||+||++|++|+|.|
T Consensus 796 ~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~e 875 (1304)
T 2vsq_A 796 QLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEE 875 (1304)
T ss_dssp CBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHH
T ss_pred CCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHH
Confidence 56678899999999999999999873 2 2359999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCce
Q psy13046 78 IEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAS 157 (365)
Q Consensus 78 ie~~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk 157 (365)
||.+|.+||.|.+++|++.++...++.++++++... ..+.+++.+++++.++.++.+.. +.+.+.+|++.+||
T Consensus 876 IE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~--~~~~~~l~~~l~~~Lp~ymvP~~-----~~~l~~lP~t~~GK 948 (1304)
T 2vsq_A 876 IEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRT--QLSAEDVKAHLKKQLPAYMVPQT-----FTFLDELPLTTNGK 948 (1304)
T ss_dssp HHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSS--SSCHHHHHHHHHHHSCGGGSCSE-----EEEESCCCCCSSCS
T ss_pred HHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCC--CCCHHHHHHHHHHhChHhhhccE-----EEEecccCCCCCcc
Confidence 999999999999999999998777888888888654 45678999999999998887743 33567899999999
Q ss_pred e
Q psy13046 158 T 158 (365)
Q Consensus 158 ~ 158 (365)
+
T Consensus 949 i 949 (1304)
T 2vsq_A 949 V 949 (1304)
T ss_dssp S
T ss_pred c
Confidence 8
No 63
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=99.73 E-value=8.3e-18 Score=167.33 Aligned_cols=134 Identities=9% Similarity=-0.041 Sum_probs=104.8
Q ss_pred CCCCCCceEEEEecCchhhhhhcc------ccc--------ccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhH
Q psy13046 13 HSSRQKKAIHFRHFDSFLLFVELC------LLL--------FPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEI 78 (365)
Q Consensus 13 ~~~~~~g~~~~~~~~~~~~y~~~~------~~~--------~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~i 78 (365)
++.|+.|||+++|+.++.||++.. |.. +||+|||++++|+||+++|.||.||+||++|++|+|.||
T Consensus 355 ~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eI 434 (620)
T 4dg8_A 355 AEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPAL 434 (620)
T ss_dssp CSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHH
T ss_pred CCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHH
Confidence 567889999999999999999873 311 799999999999999999999999999999999999999
Q ss_pred HHHHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046 79 EEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST 158 (365)
Q Consensus 79 e~~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~ 158 (365)
|.+|.+||.|.+++|++.++...++.+++ ++.... .+.+.+.+.++.++.+.. +.+.+.+|++.+||+
T Consensus 435 E~~l~~~p~V~~a~Vv~~~~~~~~~lv~~-~~~~~~------~~~~~l~~~Lp~y~~P~~-----~~~v~~lP~t~~GKi 502 (620)
T 4dg8_A 435 EQRFRRQPGILDCALLVRERNGVKQLLCA-WTGKAD------ASPQALLRQLPTWQRPHA-----CVRVEALPLTAHGKL 502 (620)
T ss_dssp HHHHHTSTTEEEEEEEEEEETTEEEEEEE-EEECTT------CCCHHHHHHSCGGGSCSE-----EEECSSCCCC----C
T ss_pred HHHHHhCCCccEEEEEEEeCCCceEEEEE-EecChH------HHHHHHHHhChhhcCCcE-----EEEECcCCCCcccCH
Confidence 99999999999999999988744444433 333221 133456667777777643 335688999999998
No 64
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=99.72 E-value=1.2e-17 Score=164.80 Aligned_cols=140 Identities=19% Similarity=0.160 Sum_probs=109.6
Q ss_pred ccCCCCCCceEEEEecCchhhhhhcc------cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhc
Q psy13046 11 NQHSSRQKKAIHFRHFDSFLLFVELC------LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT 84 (365)
Q Consensus 11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~ 84 (365)
++++.++.|||+++++..+.+|++.. +..+||+|||++++ +||+++|.||.||+||++|++|+|.+||++|.+
T Consensus 404 ~~~~~g~~GEl~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 482 (576)
T 3gqw_A 404 MPVAERVVGHICISGPSLMSGYFGDQVSQDEIAATGWLDTGDLGYL-LDGYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQ 482 (576)
T ss_dssp CBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHHHSCEEEEEEEEE-ETTEEEEEEETTTCEEETTEEECHHHHHHHHTT
T ss_pred CCCCCCCeEEEEEeCccccccccCCccccccccCCCeeeccceEEE-ECCEEEEEecCcceEEECCEEECHHHHHHHHHh
Confidence 35667789999999999999999873 46899999999999 799999999999999999999999999999999
Q ss_pred CCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhh-hcccceEEEeeeEEee--eccccccCcee
Q psy13046 85 HPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVK-RKISCIFIIIVRISCE--CILLKYRSAST 158 (365)
Q Consensus 85 ~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~-~~~~~~~~~~~~~~~~--~~l~~~~~gk~ 158 (365)
||.|.++.+++++.+. +...+.+..........+++.+.+.+.+. .+..+.. +.+. +.+|++.+||+
T Consensus 483 ~p~V~~~~vv~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~-----i~~v~~~~lP~t~~GKi 552 (576)
T 3gqw_A 483 EPEIHSGDAIAFVTAQ--EKIILQIQCRISDEERRGQLIHALAARIQSEFGVTAA-----IDLLPPHSIPRTSSGKP 552 (576)
T ss_dssp SSSCCTTSEEEEECTT--SCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHSCCEE-----EEEECSSCSCBCTTSSB
T ss_pred CcccccccEEEEEcCC--ccEEEEEEEecCchhHHHHHHHHHHHHHHHHhCCcee-----EEEECCCCcCcCCCccc
Confidence 9999998888888753 33444444443332334577777777773 3333322 2233 37999999998
No 65
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=99.71 E-value=2.6e-18 Score=170.21 Aligned_cols=143 Identities=17% Similarity=0.116 Sum_probs=113.7
Q ss_pred ccCCCCCCceEEEEecCchhhhhhcc------cc-------cc--cEecCceEEEecCCcEEEEeecCcEEEECCEEech
Q psy13046 11 NQHSSRQKKAIHFRHFDSFLLFVELC------LL-------LF--PFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYP 75 (365)
Q Consensus 11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~~-------~~--~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p 75 (365)
.+++.++.|||+++|+.++.+|+++. |. .+ ||+|||++++| ||+++|.||.||+||++|++|+|
T Consensus 392 ~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p 470 (590)
T 3kxw_A 392 IPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYP 470 (590)
T ss_dssp CBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHH
T ss_pred cCCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCH
Confidence 45677889999999999999999873 32 14 99999999999 99999999999999999999999
Q ss_pred HhHHHHH-hcCCCcc--eEEEEEeeCCCCCceEEEEEEEcCCC--CCCHHHHHHHHHhhhhhcc-cce-EEEeeeEEeee
Q psy13046 76 KEIEEFI-QTHPNVL--EAYAYGVPDERMGEEVGISIKLKENA--KLNADDIRTFCKGKVKRKI-SCI-FIIIVRISCEC 148 (365)
Q Consensus 76 ~~ie~~l-~~~~~V~--~~~v~~vp~~~~~~~~~~~v~~~~~~--~~~~~~L~~~l~~~l~~~~-~~~-~~~~~~~~~~~ 148 (365)
.+||.++ ..+|.|. ++++++++++. ++.+.+++++.++. ..+.+++.+++++.+.... .+. .+. ....+
T Consensus 471 ~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~~i~---~v~~~ 546 (590)
T 3kxw_A 471 QDIEFSLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQLEVHTIV---LIPLK 546 (590)
T ss_dssp HHHHHHHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHHSCCCCEEE---EEETT
T ss_pred HHHHHHHHhcCccccCccEEEEEecCCC-CceEEEEEEeccccccchhHHHHHHHHHHHHHHHcCCceeEEE---EECCC
Confidence 9999999 7899998 79999999875 67777888877653 2345778888888887532 221 111 11235
Q ss_pred ccccccCcee
Q psy13046 149 ILLKYRSAST 158 (365)
Q Consensus 149 ~l~~~~~gk~ 158 (365)
.+|++.+||+
T Consensus 547 ~lP~t~sGKi 556 (590)
T 3kxw_A 547 AMPHTTSGKI 556 (590)
T ss_dssp CSCCCSCHHH
T ss_pred ccCcCCCcHH
Confidence 7999999998
No 66
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.70 E-value=2.9e-17 Score=152.60 Aligned_cols=114 Identities=18% Similarity=0.190 Sum_probs=93.3
Q ss_pred ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHH---hcCCCcceEEEE-EeeCCCCCceEEEEEEEcC
Q psy13046 38 LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFI---QTHPNVLEAYAY-GVPDERMGEEVGISIKLKE 113 (365)
Q Consensus 38 ~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l---~~~~~V~~~~v~-~vp~~~~~~~~~~~v~~~~ 113 (365)
..+||+|||++++|+|| ++|.||.||+||++|+||+|.+||+.| ..||.|.+++|+ +.|++..++.++++++...
T Consensus 226 ~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~ 304 (358)
T 4gs5_A 226 NGQTVQTNDLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAM 304 (358)
T ss_dssp TTCCEEEEEEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCC
T ss_pred cCcceecCCccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCC
Confidence 57899999999999999 566799999999999999999999877 468999987765 7788888888888776543
Q ss_pred CCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046 114 NAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST 158 (365)
Q Consensus 114 ~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~ 158 (365)
. ....+++.++++++++.++.+.. +.+.+.+|++.+||+
T Consensus 305 ~-~~~~~~l~~~l~~~L~~~~~P~~-----i~~v~~lP~t~~GKi 343 (358)
T 4gs5_A 305 P-EALTERLTAEIRSRVSTYENPKH-----IYFAKAFAKTQTDKI 343 (358)
T ss_dssp C-HHHHHHHHHHHHHHSCGGGSCSC-----EEEESSCCBCTTSCB
T ss_pred C-CcCHHHHHHHHHhhCCCCCCceE-----EEEECCcCCCCCCCh
Confidence 3 23457889999998888776643 345678999999998
No 67
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.67 E-value=2.7e-16 Score=150.04 Aligned_cols=136 Identities=17% Similarity=0.257 Sum_probs=106.6
Q ss_pred ccCCCCCCceEEEEecCchhhhhhcccccccEecCceEEEecCC------c---EEEEeecCcEEEECCEEechHhHHHH
Q psy13046 11 NQHSSRQKKAIHFRHFDSFLLFVELCLLLFPFLSRDQFVLREDG------Y---GQVVGRIKDMIIRGGENIYPKEIEEF 81 (365)
Q Consensus 11 ~~~~~~~~g~~~~~~~~~~~~y~~~~~~~~~~~tgDl~~~~~~g------~---~~i~GR~~d~i~~~G~~v~p~~ie~~ 81 (365)
+++++|+.|||++++... ..+..+||+|||+++++++| + ++|.||.||+|+++|.+|+|.+||++
T Consensus 276 ~~~~~g~~Gel~v~~~~~------~~~~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~ 349 (436)
T 3qov_A 276 EPVPEGEIGELVLTTLDR------EMMPLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKI 349 (436)
T ss_dssp SBCSTTCCEEEEEEESSC------CSSCCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHH
T ss_pred CCCCCCCceEEEEeccCc------CCceEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHH
Confidence 566788999999998432 23467899999999999998 5 69999999999999999999999999
Q ss_pred HhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCC----HHHHHHHHHhhhhhcccceEEEeeeEEeee--ccccccC
Q psy13046 82 IQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN----ADDIRTFCKGKVKRKISCIFIIIVRISCEC--ILLKYRS 155 (365)
Q Consensus 82 l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~----~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~--~l~~~~~ 155 (365)
|.+||.|.++++++++++..++.+.++|+++ +...+ .+++.+.+++.+..++... ..+.+.+ .+|++.
T Consensus 350 l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~~~~~~~~~~~l~~~l~~~l~~~~~~p----~~i~~v~~~~lP~t~- 423 (436)
T 3qov_A 350 LVQFPELGSNYLITLETVNNQDEMIVEVELS-DLSTDNYIELEKIRRDIIRQLKDEILVT----PKVKLVKKGSLPQSE- 423 (436)
T ss_dssp HTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TTCCCCHHHHHHHHHHHHHHHHHHHSSC----CEEEEECTTCCC----
T ss_pred HHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-CccccchhhHHHHHHHHHHHHHHhcCCc----eEEEEeCCCcccCcC-
Confidence 9999999999999999877788899999988 54444 5778888888887773321 1333445 789988
Q ss_pred cee
Q psy13046 156 AST 158 (365)
Q Consensus 156 gk~ 158 (365)
||+
T Consensus 424 GKi 426 (436)
T 3qov_A 424 GKA 426 (436)
T ss_dssp ---
T ss_pred Ccc
Confidence 887
No 68
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.65 E-value=2.1e-16 Score=151.09 Aligned_cols=139 Identities=13% Similarity=0.253 Sum_probs=110.3
Q ss_pred eccCCCCCCceEEEEecCchhhhhhcccccccEecCceEEEecC-CcE-----EEEeecCcEEEECCEEechHhHHHHHh
Q psy13046 10 ANQHSSRQKKAIHFRHFDSFLLFVELCLLLFPFLSRDQFVLRED-GYG-----QVVGRIKDMIIRGGENIYPKEIEEFIQ 83 (365)
Q Consensus 10 ~~~~~~~~~g~~~~~~~~~~~~y~~~~~~~~~~~tgDl~~~~~~-g~~-----~i~GR~~d~i~~~G~~v~p~~ie~~l~ 83 (365)
.+++++|+.|||++++... ..|..+||+|||+++++++ |++ +|.||.||+|+++|.+|+|.+||+++.
T Consensus 282 g~~~~~G~~Gel~v~~~t~------~~~p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~ 355 (443)
T 2y4o_A 282 GEVLPDGSQGELVFTSLTK------EAMPVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVV 355 (443)
T ss_dssp CCBCCTTCCEEEEEEESSC------SSSCCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHH
T ss_pred CCCCCCCCceEEEEeCCCc------ccChhheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHH
Confidence 3566788999999998432 2346789999999999999 986 899999999999999999999999999
Q ss_pred cCCCcceEEEEEeeCCCCCceEEEEEEEcC--C---CCCCHHHHHHHHHhhhhhcccceEEEeeeEEee--eccccccCc
Q psy13046 84 THPNVLEAYAYGVPDERMGEEVGISIKLKE--N---AKLNADDIRTFCKGKVKRKISCIFIIIVRISCE--CILLKYRSA 156 (365)
Q Consensus 84 ~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~--~---~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~--~~l~~~~~g 156 (365)
+||.|.++++++++++..++.+.++|++.+ + ...+.+++.+++++.++.++... ..+.+. +.+|++.+|
T Consensus 356 ~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p----~~v~~v~~~~lP~t~~G 431 (443)
T 2y4o_A 356 ALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAASVTDGERAALARELQHRIKTMVGVS----SGVTVLAAGGIPATATG 431 (443)
T ss_dssp TSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHTTCCHHHHHHHHHHHHHHHHHHTCCC----CEEEEECTTCSCCCTTS
T ss_pred hCcCcCccEEEEEecCCCCceEEEEEEECCcccccchhhHHHHHHHHHHHHHHHHhCCc----eEEEEeCCCcccCccCC
Confidence 999999999999987766778888888765 2 12334678888888887654221 112233 579999989
Q ss_pred ee
Q psy13046 157 ST 158 (365)
Q Consensus 157 k~ 158 (365)
|+
T Consensus 432 Ki 433 (443)
T 2y4o_A 432 KA 433 (443)
T ss_dssp CC
T ss_pred cc
Confidence 98
No 69
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.63 E-value=3.7e-16 Score=149.09 Aligned_cols=138 Identities=15% Similarity=0.185 Sum_probs=109.7
Q ss_pred eccCCCCCCceEEEEecCchhhhhhcccccccEecCceEEEec-CCcE-----EEEeecCcEEEECCEEechHhHHHHHh
Q psy13046 10 ANQHSSRQKKAIHFRHFDSFLLFVELCLLLFPFLSRDQFVLRE-DGYG-----QVVGRIKDMIIRGGENIYPKEIEEFIQ 83 (365)
Q Consensus 10 ~~~~~~~~~g~~~~~~~~~~~~y~~~~~~~~~~~tgDl~~~~~-~g~~-----~i~GR~~d~i~~~G~~v~p~~ie~~l~ 83 (365)
.+++++|+.|||++++... ..+..+||+|||++++|+ +|++ +|.||.||+|+++|++|+|.+||+++.
T Consensus 280 g~~~~~g~~Gel~v~~~t~------~~~~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~ 353 (437)
T 2y27_A 280 GEVLPDGELGELVFTSLTK------EALPIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLL 353 (437)
T ss_dssp CCBCCTTCCEEEEEEESSC------SSSCCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHT
T ss_pred CCCCCCCCccEEEEecCCc------CCchhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHH
Confidence 3567788999999998432 234678999999999999 6985 899999999999999999999999999
Q ss_pred cCCCcceEEEEEeeCCCCCceEEEEEEEcCCCC---CCHHHHHHHHHhhhhhcccceEEEeeeEEee--eccccccCcee
Q psy13046 84 THPNVLEAYAYGVPDERMGEEVGISIKLKENAK---LNADDIRTFCKGKVKRKISCIFIIIVRISCE--CILLKYRSAST 158 (365)
Q Consensus 84 ~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~---~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~--~~l~~~~~gk~ 158 (365)
+||.|.++++++++++..++.+.++|++.++.. .+.+++.+++++.++.++... ..+.+. +.+|++. ||+
T Consensus 354 ~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p----~~v~~v~~~~lP~t~-GKi 428 (437)
T 2y27_A 354 KQRALAPHYQIVLTKEGPLDVLTLNVEPCPETAPDTAAIQVAKQALAYDIKSLIGVT----AVINVLPVNGIERSV-GKA 428 (437)
T ss_dssp TCTTBCSCCEEEEEEETTEEEEEEEECBCTTTTTCHHHHHHHHHHHHHHHHHHHCCC----EEEEECCTTCSCCCS-SSC
T ss_pred hCcCcCccEEEEEeecCCCceEEEEEEECCCccchhhhHHHHHHHHHHHHHHhcCCc----eEEEEeCCCCccCCC-Ccc
Confidence 999999999999988767788888888876533 234678888888887764321 122233 4789997 888
No 70
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.31 E-value=8.1e-12 Score=95.09 Aligned_cols=93 Identities=19% Similarity=0.257 Sum_probs=71.0
Q ss_pred eecCcEEEECCEEechHhHHHHHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCC----CHHHHHHHHHhhhhhccc
Q psy13046 60 GRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL----NADDIRTFCKGKVKRKIS 135 (365)
Q Consensus 60 GR~~d~i~~~G~~v~p~~ie~~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~----~~~~L~~~l~~~l~~~~~ 135 (365)
||.||||+++|.|++|.+||.++.+||.|.++++++++++..++.+.+++++ ++... +.+++.+.+++.+...+.
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~~l~~~~~ 79 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLFTDDYGRLQALTREITRQLKDEIL 79 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTCCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCccCEEEECCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCccccchhHHHHHHHHHHHHHHHhhC
Confidence 7999999999999999999999999999999999999887777888899888 54322 346777788877765544
Q ss_pred ceEEEeeeEEeee--ccccccCcee
Q psy13046 136 CIFIIIVRISCEC--ILLKYRSAST 158 (365)
Q Consensus 136 ~~~~~~~~~~~~~--~l~~~~~gk~ 158 (365)
... .+.+.+ .+|++ +||+
T Consensus 80 ~~~----~v~~v~~~~lPrt-sGKi 99 (109)
T 3gxs_A 80 VTP----RVKLVPKGALPKS-EGKA 99 (109)
T ss_dssp SCC----EEEEECTTCSCCC----C
T ss_pred Cce----EEEEECCCCccCC-CCce
Confidence 432 233333 79999 9998
No 71
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.30 E-value=1.2e-11 Score=94.09 Aligned_cols=96 Identities=18% Similarity=0.243 Sum_probs=71.4
Q ss_pred eecCcEEEECCEEechHhHHHHHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCH---HHHHHHHHhhhhhcccc
Q psy13046 60 GRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA---DDIRTFCKGKVKRKISC 136 (365)
Q Consensus 60 GR~~d~i~~~G~~v~p~~ie~~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~---~~L~~~l~~~l~~~~~~ 136 (365)
.|.||||+++|.|+||.+||.++.+||.|.++++++++++..++.+.++++..++...+. +++.+.+++.+...+..
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~gv 80 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILV 80 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhCC
Confidence 389999999999999999999999999999999999999888888989998887655443 45666677666655443
Q ss_pred eEEEeeeEEeeeccccccCcee
Q psy13046 137 IFIIIVRISCECILLKYRSAST 158 (365)
Q Consensus 137 ~~~~~~~~~~~~~l~~~~~gk~ 158 (365)
...+ .+.-+..||++ +||+
T Consensus 81 ~~~v--~~v~~~~lPrt-sGKi 99 (109)
T 3lax_A 81 TPRV--KLVPKGALPKS-EGKA 99 (109)
T ss_dssp CCEE--EEECTTCSCCC----C
T ss_pred ccce--EEEcCCeecCC-CCCc
Confidence 2211 11223478987 6887
No 72
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.29 E-value=9e-12 Score=94.90 Aligned_cols=60 Identities=22% Similarity=0.349 Sum_probs=54.8
Q ss_pred eecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEEEcCCCCCCH
Q psy13046 292 GRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA 351 (365)
Q Consensus 292 GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~ 351 (365)
.|.|||||++|.||+|.|||++|.+||+|.++++++++++..++.+.++|+..++...+.
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~ 60 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDY 60 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCH
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeecccccc
Confidence 489999999999999999999999999999999999999999999999999887655443
No 73
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.26 E-value=1e-11 Score=94.50 Aligned_cols=70 Identities=19% Similarity=0.309 Sum_probs=57.2
Q ss_pred eecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEEEcCCCCC----CHHHHHHHHHccc
Q psy13046 292 GRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL----NADDIRTFCKGKV 362 (365)
Q Consensus 292 GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~----~~~~l~~~~~~~l 362 (365)
||.|||||++|.||+|.|||++|.+||+|.++++++++++..++.+.++|++ ++... +.+++.+.+++.+
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~~l 74 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLFTDDYGRLQALTREITRQL 74 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTCCCCHHHHHHHHHHHHHHH
T ss_pred CCccCEEEECCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCccccchhHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999988888788899999998 54322 2345555554443
No 74
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=98.45 E-value=2.4e-08 Score=92.70 Aligned_cols=105 Identities=8% Similarity=-0.008 Sum_probs=54.0
Q ss_pred ccCCCCccccccCCcccccccccccccccccccceeeEe------ecCeeEEEEEcccceeccCCceeeEE-eecC---c
Q psy13046 183 TVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHI------FEHLFLELVLYIVNSVLYNFKWINQV-SSQT---M 252 (365)
Q Consensus 183 ~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~------~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~---~ 252 (365)
..+|+..+.+. ||+||++.++.... ..++|+| +|+++++|+|++++...+ .+..||+ +++. .
T Consensus 254 ~~~p~~~v~~~-YG~TE~~~~~~~~~------~~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp-~G~~GEl~vt~l~~~~ 325 (369)
T 3hgu_A 254 EILPDCEFSAS-YGSTSALGVSRSLL------ITSESQQVIYDSFSPFITYDVVDSITAQTVE-YGERGNVIVTHLSPWA 325 (369)
T ss_dssp HTCTTSEEEEE-EEEGGGTEEEEECC------BCTTCSSCEEECCTTTEEEEEECTTTCSBCC-TTCEEEEEEEEEETTE
T ss_pred HhCCCcEEEcc-cCchhhhcceeccc------cccCCCcccccCCCCCeEEEEECCCCCcCCC-CCCceEEEEEEcCccc
Confidence 45678999999 99999986543211 1247888 999999999984443333 3578887 5542 1
Q ss_pred ccccccCCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCce
Q psy13046 253 AMKSKRGLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGE 303 (365)
Q Consensus 253 ~~~gY~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~ 303 (365)
++.+|...+..+..... +||+.+|+ ..+..++|.++..++.|.
T Consensus 326 ~l~ry~tgD~~~~~~~~-~g~~~d~~-------~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 326 FYPRVAERDTAIRLPGV-SGFAGDRL-------ADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEEEEEEEEEEEEECCS-TTCSSCEE-------EEEEECC-----------
T ss_pred ccccccCCceEEEecCC-CCCcCccc-------ccceeccccCCCceeeec
Confidence 23333333322222211 33332222 135667888888888874
No 75
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=98.32 E-value=2.1e-07 Score=89.30 Aligned_cols=50 Identities=12% Similarity=-0.054 Sum_probs=43.1
Q ss_pred ccCCCCCCceEEEEecCchhhhhhcc------c------------ccccEecCceEEEecCCcEEEEee
Q psy13046 11 NQHSSRQKKAIHFRHFDSFLLFVELC------L------------LLFPFLSRDQFVLREDGYGQVVGR 61 (365)
Q Consensus 11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~------------~~~~~~tgDl~~~~~~g~~~i~GR 61 (365)
+.++.++.|||+++|+.+|.+|+++. | ..+||+|||++++| ||+++|+||
T Consensus 413 ~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 413 IECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp EECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred cCCCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 45678899999999999999999873 3 35699999999997 999999998
No 76
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=97.84 E-value=0.00015 Score=70.64 Aligned_cols=43 Identities=9% Similarity=0.036 Sum_probs=39.6
Q ss_pred eecCceEEEcc----CCcEEEEeecCceEEeCceEeChHHHHHHHHc
Q psy13046 274 QRPRYQFVLRE----DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT 316 (365)
Q Consensus 274 ~~TGD~~~~~~----~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~ 316 (365)
|++||+.+++. ...+.|+||.+++|++.|.++++.+||+++.+
T Consensus 412 Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~ 458 (609)
T 4b2g_A 412 YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDN 458 (609)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHH
T ss_pred eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHH
Confidence 89999999873 46899999999999999999999999999984
No 77
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=97.57 E-value=0.00042 Score=67.21 Aligned_cols=44 Identities=7% Similarity=0.002 Sum_probs=40.3
Q ss_pred eecCceEEEcc----CCcEEEEeecCceEEeCceEeChHHHHHHHHcC
Q psy13046 274 QRPRYQFVLRE----DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTH 317 (365)
Q Consensus 274 ~~TGD~~~~~~----~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~ 317 (365)
|++||+.++.. ..++.|+||.++++++.|+++++.+||+++.+.
T Consensus 400 Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a 447 (581)
T 4eql_A 400 MRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQA 447 (581)
T ss_dssp EECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC
T ss_pred EEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHHH
Confidence 89999999875 458999999999999999999999999999854
No 78
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=97.41 E-value=0.002 Score=62.39 Aligned_cols=71 Identities=8% Similarity=0.002 Sum_probs=51.8
Q ss_pred eecCceEEEccC----CcEEEEeecCceEEeCceEeChHHHHHHHHc------CC--CeeEEEEEeecCCCCCcEEEEEE
Q psy13046 274 QRPRYQFVLRED----GYGQVVGRIKDMIIRGGENIYPKEIEEFIQT------HP--NVLEAYAYGVPDERMGEEVGISI 341 (365)
Q Consensus 274 ~~TGD~~~~~~~----G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~------~~--~v~~~~v~~~~~~~~g~~~~a~v 341 (365)
|++||+.++..- ..+.|+||.++++++.|.++++.+||+++.+ .. .|.|-.+.+......+. -+.|+
T Consensus 407 Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~~~p~h-yv~~w 485 (581)
T 4epl_A 407 YRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPGH-YAIFW 485 (581)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECSSSSCE-EEEEE
T ss_pred EEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCCCCCCc-EEEEE
Confidence 899999998642 4799999999999999999999999999975 22 46676666533222233 33445
Q ss_pred EEcC
Q psy13046 342 KLKE 345 (365)
Q Consensus 342 ~~~~ 345 (365)
+++.
T Consensus 486 E~~~ 489 (581)
T 4epl_A 486 EISG 489 (581)
T ss_dssp EESS
T ss_pred eecC
Confidence 6643
No 79
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=96.89 E-value=0.00063 Score=66.02 Aligned_cols=63 Identities=6% Similarity=-0.002 Sum_probs=49.5
Q ss_pred CCCCCCceEEEEecCchhhhhhcccccccEecCceEEEec----CCcEEEEeecCcEEEECCEEechHhHHHHHhcC
Q psy13046 13 HSSRQKKAIHFRHFDSFLLFVELCLLLFPFLSRDQFVLRE----DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTH 85 (365)
Q Consensus 13 ~~~~~~g~~~~~~~~~~~~y~~~~~~~~~~~tgDl~~~~~----~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~~ 85 (365)
+..|+..++.++...+.- -|++||+++++. ...+.|+||.++++++.|+++++.++|+++.+.
T Consensus 381 Ve~G~~YelViTt~~GL~----------RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a 447 (581)
T 4eql_A 381 VKLGCTYEPVVTNFAGLY----------RMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQA 447 (581)
T ss_dssp CCTTCEEEEEEECSSSCC----------SEECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC
T ss_pred cCCCceEEEEEeecccee----------eEEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHHH
Confidence 334556666666543322 279999999986 457899999999999999999999999999854
No 80
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=96.78 E-value=0.0006 Score=66.32 Aligned_cols=63 Identities=6% Similarity=0.091 Sum_probs=51.1
Q ss_pred cCCCCCCceEEEEecCchhhhhhcccccccEecCceEEEec----CCcEEEEeecCcEEEECCEEechHhHHHHHhc
Q psy13046 12 QHSSRQKKAIHFRHFDSFLLFVELCLLLFPFLSRDQFVLRE----DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT 84 (365)
Q Consensus 12 ~~~~~~~g~~~~~~~~~~~~y~~~~~~~~~~~tgDl~~~~~----~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~ 84 (365)
.+..|+..++.++...+... |++||+++++. ...+.|+||.++++++.|+++++.+||+++.+
T Consensus 392 eVe~G~~YelViTt~~GL~R----------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~ 458 (609)
T 4b2g_A 392 HVEVGKEYELVITTYAGLYR----------YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDN 458 (609)
T ss_dssp GCCTTCEEEEEEECTTSCCS----------EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHH
T ss_pred HcCCCCeEEEehhhhhhhhh----------eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHH
Confidence 34566677777776544322 79999999884 46889999999999999999999999999983
No 81
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=96.41 E-value=0.0014 Score=63.46 Aligned_cols=63 Identities=5% Similarity=0.022 Sum_probs=49.9
Q ss_pred cCCCCCCceEEEEecCchhhhhhcccccccEecCceEEEecC----CcEEEEeecCcEEEECCEEechHhHHHHHhc
Q psy13046 12 QHSSRQKKAIHFRHFDSFLLFVELCLLLFPFLSRDQFVLRED----GYGQVVGRIKDMIIRGGENIYPKEIEEFIQT 84 (365)
Q Consensus 12 ~~~~~~~g~~~~~~~~~~~~y~~~~~~~~~~~tgDl~~~~~~----g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~ 84 (365)
.+..|+.+++.++...+.. -|++||+++++.- ..+.|+||.++++++.|+++++.+|++++.+
T Consensus 387 eve~G~~YelviTt~~GL~----------RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~ 453 (581)
T 4epl_A 387 QVKIGEEYEVVITNYAGLY----------RYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVES 453 (581)
T ss_dssp GCCTTCEEEEEEESTTSCS----------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHH
T ss_pred HcCCCCeEEEEEeecccee----------eEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHH
Confidence 4455666777776654322 2799999998752 4689999999999999999999999999885
No 82
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=69.50 E-value=17 Score=24.67 Aligned_cols=47 Identities=21% Similarity=0.287 Sum_probs=33.6
Q ss_pred hHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEEEcCCCCCCHHHHHHHHHcccC
Q psy13046 307 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVS 363 (365)
Q Consensus 307 ~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~l~ 363 (365)
..++++.|.++|+|.+|..+.-+.. ..+.|.. .+.+++.+++.++|.
T Consensus 15 ~~~~~~~l~~~peV~e~~~vtG~~D-----~ll~v~~-----~d~~~l~~~i~~~l~ 61 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAYVVYGEYD-----LIVKVET-----DTLKDLDQFITEKIR 61 (83)
T ss_dssp HHHHHHHHHTSTTEEEEEECBSSCS-----EEEEEEE-----SSHHHHHHHHHTTGG
T ss_pred HHHHHHHHhCCCCeeEEEEEcccCC-----EEEEEEE-----CCHHHHHHHHHHHhc
Confidence 4789999999999999998754433 3444443 356788888876554
No 83
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=64.03 E-value=3.6 Score=37.04 Aligned_cols=37 Identities=11% Similarity=0.155 Sum_probs=26.5
Q ss_pred eccCCCCCCceEEEEecCchhhhhhcccccccEecCceEEEecC
Q psy13046 10 ANQHSSRQKKAIHFRHFDSFLLFVELCLLLFPFLSRDQFVLRED 53 (365)
Q Consensus 10 ~~~~~~~~~g~~~~~~~~~~~~y~~~~~~~~~~~tgDl~~~~~~ 53 (365)
.+++++|+.|||++++.... .+ ..+|+|||++...+.
T Consensus 305 g~~vp~G~~GEl~vt~l~~~------~~-l~ry~tgD~~~~~~~ 341 (369)
T 3hgu_A 305 AQTVEYGERGNVIVTHLSPW------AF-YPRVAERDTAIRLPG 341 (369)
T ss_dssp CSBCCTTCEEEEEEEEEETT------EE-EEEEEEEEEEEEECC
T ss_pred CcCCCCCCceEEEEEEcCcc------cc-cccccCCceEEEecC
Confidence 45678899999999874322 12 345799999987654
No 84
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=58.85 E-value=27 Score=23.38 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=32.2
Q ss_pred hHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEEEcCCCCCCHHHHHHHHHcccC
Q psy13046 307 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVS 363 (365)
Q Consensus 307 ~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~l~ 363 (365)
..++++.|.++|+|.+|..+.-+.. ..+.+.. .+.+++.+++.++|.
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~~d-----~l~~v~~-----~d~~~l~~~~~~~l~ 61 (83)
T 2zbc_A 15 EDEVFERLKSMSEVTEVHVVYGVYD-----IVVKVEA-----DSMDKLKDFVTNTIR 61 (83)
T ss_dssp HHHHHHHHTTCTTEEEEEECSSSCS-----EEEEEEC-----SSHHHHHHHHHHTGG
T ss_pred HHHHHHHHhCCCCeEEEEEEeccCC-----EEEEEEE-----CCHHHHHHHHHHHhc
Confidence 3789999999999999988754333 3444432 355778777765543
No 85
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=52.41 E-value=29 Score=23.96 Aligned_cols=47 Identities=19% Similarity=0.340 Sum_probs=32.0
Q ss_pred hHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEEEcCCCCCCHHHHHHHHHcccC
Q psy13046 307 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVS 363 (365)
Q Consensus 307 ~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~l~ 363 (365)
..++++.|.++|+|.+|..+.-+.. ..+.+..+ +.+++.+++.+++.
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~~D-----~ll~v~~~-----d~~~l~~~l~~~l~ 61 (92)
T 2djw_A 15 VQALGEAIAELPQVAEVYSVTGPYD-----LVALVRLK-----DVEELDDVVTQGIL 61 (92)
T ss_dssp HHHHHHHHTTSTTEEEEEEESSSSS-----EEEEEEES-----SGGGHHHHCCCCCT
T ss_pred HHHHHHHHhcCCCeEEEEEeecCCC-----EEEEEEEC-----CHHHHHHHHHHhcc
Confidence 5789999999999999998854443 44444433 34667776655443
No 86
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=34.57 E-value=1.2e+02 Score=21.47 Aligned_cols=57 Identities=12% Similarity=0.116 Sum_probs=32.2
Q ss_pred hHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEEEcCCCCCC-----HHHHHHHHHcccC
Q psy13046 307 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN-----ADDIRTFCKGKVS 363 (365)
Q Consensus 307 ~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~-----~~~l~~~~~~~l~ 363 (365)
..+|++.+.+.|+|.++-=+-.........+.+-|+..++..+. .+++.+.|+++++
T Consensus 12 ~~~I~~~l~~~~gV~~vh~lr~r~~G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~ 73 (107)
T 2zzt_A 12 YDDIFAVLERFPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRD 73 (107)
T ss_dssp HHHHHHHHTTCSSCEEEEEEEEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCCccccEEEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 46788999999999877655554432223455556665432211 1345555555544
No 87
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=31.73 E-value=1.6e+02 Score=22.09 Aligned_cols=47 Identities=15% Similarity=0.070 Sum_probs=32.7
Q ss_pred hHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEEEcCCCCCCHHHHHHHHHcccC
Q psy13046 307 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVS 363 (365)
Q Consensus 307 ~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~l~ 363 (365)
..++.+.|.++|+|.+|..+..+.. ..+.|.. .+.+++.+++.+++.
T Consensus 82 ~~~~~~~l~~~peV~~~~~vtG~~d-----~~~~v~~-----~d~~~l~~~l~~~l~ 128 (152)
T 2cg4_A 82 YPSALAKLESLDEVTEAYYTTGHYS-----IFIKVMC-----RSIDALQHVLINKIQ 128 (152)
T ss_dssp HHHHHHHHHTCTTEEEEEEESSSCS-----EEEEEEE-----SCHHHHHHHHHHTTT
T ss_pred HHHHHHHHhCCcCeEEEEEEecccC-----EEEEEEE-----CCHHHHHHHHHHHhh
Confidence 5689999999999999998843322 4444443 256788888766554
No 88
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=23.41 E-value=1.4e+02 Score=18.40 Aligned_cols=46 Identities=11% Similarity=0.070 Sum_probs=30.0
Q ss_pred ChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEEEcCCCCCCHHHHHHHHHc
Q psy13046 306 YPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKG 360 (365)
Q Consensus 306 ~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~ 360 (365)
....||+.|.++++|.++.+--.. +. +.|.. + ...+.+++.+.+++
T Consensus 16 C~~~i~~~l~~~~gv~~~~v~~~~----~~---~~v~~-~-~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 16 CASSIERAIAKVPGVQSCQVNFAL----EQ---AVVSY-H-GETTPQILTDAVER 61 (69)
T ss_dssp HHHHHHHHHHTSTTEEEEEEETTT----TE---EEEEE-C-TTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCeEEEEEEecC----CE---EEEEE-C-CCCCHHHHHHHHHH
Confidence 356799999999999887764221 11 23333 2 34677888887764
No 89
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=23.32 E-value=2.1e+02 Score=21.32 Aligned_cols=44 Identities=11% Similarity=-0.023 Sum_probs=29.0
Q ss_pred HHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEEE-cCCCCCCHHHHHHHHHcc
Q psy13046 308 KEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL-KENAKLNADDIRTFCKGK 361 (365)
Q Consensus 308 ~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~-~~~~~~~~~~l~~~~~~~ 361 (365)
.++++.|.++|+|.+|..+..+.. ..+.|.. . +.+++.+++.++
T Consensus 83 ~~~~~~l~~~peV~~~~~vtG~~d-----~~~~v~~~~-----d~~~l~~~~~~~ 127 (151)
T 2dbb_A 83 DKVISEISDIEYVKSVEKGVGRYN-----IIVRLLLPK-----DIKDAENLISEF 127 (151)
T ss_dssp HHHHHHHTTCTTEEEEEEEESSCS-----EEEEEEEES-----SHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCeEEEeEecCCCC-----EEEEEEEcC-----CHHHHHHHHHHH
Confidence 478888999999999998754332 4444443 3 346666666443
No 90
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=22.14 E-value=1.5e+02 Score=18.51 Aligned_cols=47 Identities=11% Similarity=0.159 Sum_probs=30.6
Q ss_pred ChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEEEcCCCCCCHHHHHHHHHc
Q psy13046 306 YPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKG 360 (365)
Q Consensus 306 ~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~ 360 (365)
....||++|.++++|..+.|--... .+.|...+ ...+.+++.+.+++
T Consensus 16 C~~~ie~~l~~~~gv~~~~v~~~~~-------~~~v~~~~-~~~~~~~i~~~i~~ 62 (74)
T 3dxs_X 16 CSNSVEAALMNVNGVFKASVALLQN-------RADVVFDP-NLVKEEDIKEEIED 62 (74)
T ss_dssp HHHHHHHHHHTSTTEEEEEEEGGGT-------EEEEEECT-TTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEEEecCC-------EEEEEECC-CCCCHHHHHHHHHH
Confidence 3567999999999998887643222 23344333 23567788877764
No 91
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=20.84 E-value=1.4e+02 Score=20.35 Aligned_cols=58 Identities=10% Similarity=0.148 Sum_probs=30.9
Q ss_pred ChHHHHHHHHcC--CCeeEEEEEeecCCCCCcEEEEEEEEcCCCCCC-----HHHHHHHHHcccC
Q psy13046 306 YPKEIEEFIQTH--PNVLEAYAYGVPDERMGEEVGISIKLKENAKLN-----ADDIRTFCKGKVS 363 (365)
Q Consensus 306 ~~~eiE~~l~~~--~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~-----~~~l~~~~~~~l~ 363 (365)
...+|++.+.++ |+|.++-=+-.........+.+-++..++.... .+++++.++++++
T Consensus 11 ~~~~I~~~l~~~~~~gV~~vh~l~~~~~g~~~~v~~hi~v~~~~~~~~~h~i~~~ie~~l~~~~~ 75 (94)
T 3byp_A 11 EVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFP 75 (94)
T ss_dssp HHHHHHHHHHHHHTTTCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhcCCCCceeeeeEEEEEECCcEEEEEEEEECCCCcHHHHHHHHHHHHHHHHHHCC
Confidence 356788899888 998866544433322223344555555432211 1345555555443
Done!