RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13046
(365 letters)
>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated.
Length = 559
Score = 148 bits (377), Expect = 3e-40
Identities = 48/85 (56%), Positives = 63/85 (74%)
Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
V+ E+GY +VGRIKDMIIRGGENIYP+EIEEF+ THP + + GVPDE+ GEEV
Sbjct: 436 VMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAW 495
Query: 341 IKLKENAKLNADDIRTFCKGKVSKF 365
I L+ A L +D+R FC+GK++ +
Sbjct: 496 IILRPGATLTEEDVRDFCRGKIAHY 520
Score = 148 bits (375), Expect = 7e-40
Identities = 50/87 (57%), Positives = 63/87 (72%), Gaps = 1/87 (1%)
Query: 49 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 108
V+ E+GY +VGRIKDMIIRGGENIYP+EIEEF+ THP + + GVPDE+ GEEV
Sbjct: 436 VMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAW 495
Query: 109 IKLKENAKLNADDIRTFCKGKVKR-KI 134
I L+ A L +D+R FC+GK+ KI
Sbjct: 496 IILRPGATLTEEDVRDFCRGKIAHYKI 522
>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 347
Score = 141 bits (358), Expect = 5e-39
Identities = 48/85 (56%), Positives = 62/85 (72%)
Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
+ EDGY ++VGRIKDMIIRGGENIYP EIEE + THP V EA GVPDER+GE V
Sbjct: 237 YMDEDGYLRIVGRIKDMIIRGGENIYPAEIEEALLTHPAVAEAAVVGVPDERLGEVVAAF 296
Query: 341 IKLKENAKLNADDIRTFCKGKVSKF 365
+ LK A L +++ FC+G++++F
Sbjct: 297 VVLKPGATLTEEELIAFCRGRLARF 321
Score = 138 bits (351), Expect = 5e-38
Identities = 51/94 (54%), Positives = 62/94 (65%), Gaps = 5/94 (5%)
Query: 46 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 105
D + EDGY ++VGRIKDMIIRGGENIYP EIEE + THP V EA GVPDER+GE V
Sbjct: 234 DLGYMDEDGYLRIVGRIKDMIIRGGENIYPAEIEEALLTHPAVAEAAVVGVPDERLGEVV 293
Query: 106 GISIKLKENAKLNADDIRTFCKG-----KVKRKI 134
+ LK A L +++ FC+G KV R +
Sbjct: 294 AAFVVLKPGATLTEEELIAFCRGRLARFKVPRYV 327
>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional.
Length = 558
Score = 114 bits (287), Expect = 5e-28
Identities = 42/85 (49%), Positives = 60/85 (70%)
Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
+ E GY ++VGR KDMIIRGGENIYP+EIEEF+ THP V + +GVPDE+ GEE+
Sbjct: 437 TMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAW 496
Query: 341 IKLKENAKLNADDIRTFCKGKVSKF 365
++L + +++R FCK +++ F
Sbjct: 497 VRLHPGHAASEEELREFCKARIAHF 521
Score = 111 bits (280), Expect = 5e-27
Identities = 42/85 (49%), Positives = 59/85 (69%)
Query: 46 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 105
D + E GY ++VGR KDMIIRGGENIYP+EIEEF+ THP V + +GVPDE+ GEE+
Sbjct: 434 DLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEI 493
Query: 106 GISIKLKENAKLNADDIRTFCKGKV 130
++L + +++R FCK ++
Sbjct: 494 VAWVRLHPGHAASEEELREFCKARI 518
>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar
proteins. Bile acid-Coenzyme A ligase catalyzes the
formation of bile acid-CoA conjugates in a two-step
reaction: the formation of a bile acid-AMP molecule as
an intermediate, followed by the formation of a bile
acid-CoA. This ligase requires a bile acid with a free
carboxyl group, ATP, Mg2+, and CoA for synthesis of the
final bile acid-CoA conjugate. The bile acid-CoA
ligation is believed to be the initial step in the bile
acid 7alpha-dehydroxylation pathway in the intestinal
bacterium Eubacterium sp.
Length = 342
Score = 109 bits (276), Expect = 3e-27
Identities = 37/82 (45%), Positives = 52/82 (63%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
EDGY +V R KDMII GGENIYP E+E + HP V + GVPDE GE V + L
Sbjct: 235 EDGYLYIVDRKKDMIISGGENIYPAEVENVLLAHPAVADVAVIGVPDEEWGEAVVAVVVL 294
Query: 344 KENAKLNADDIRTFCKGKVSKF 365
+ A L+A+++ FC+ +++ +
Sbjct: 295 RPGATLDAEELIAFCRERLAGY 316
Score = 106 bits (267), Expect = 4e-26
Identities = 40/91 (43%), Positives = 52/91 (57%), Gaps = 3/91 (3%)
Query: 52 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
EDGY +V R KDMII GGENIYP E+E + HP V + GVPDE GE V + L
Sbjct: 235 EDGYLYIVDRKKDMIISGGENIYPAEVENVLLAHPAVADVAVIGVPDEEWGEAVVAVVVL 294
Query: 112 KENAKLNADDIRTFCK---GKVKRKISCIFI 139
+ A L+A+++ FC+ K S F+
Sbjct: 295 RPGATLDAEELIAFCRERLAGYKVPKSVEFV 325
>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA
synthetases similar to Escherichia coli FadD. This
subfamily of the AMP-forming adenylation family contains
Escherichia coli FadD and similar prokaryotic fatty acid
CoA synthetases. FadD was characterized as a long-chain
fatty acid CoA synthetase. The gene fadD is regulated by
the fatty acid regulatory protein FadR. Fatty acid CoA
synthetase catalyzes the formation of fatty acyl-CoA in
a two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions.
Length = 468
Score = 110 bits (278), Expect = 5e-27
Identities = 40/82 (48%), Positives = 54/82 (65%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
EDGY +V R KDMII GG N+YP+EIEE + +HP VLEA GVPD GE V + L
Sbjct: 361 EDGYFYIVDRKKDMIIVGGFNVYPREIEEVLYSHPAVLEAAVVGVPDPYRGEAVKAFVVL 420
Query: 344 KENAKLNADDIRTFCKGKVSKF 365
KE A L +++ FC+ +++ +
Sbjct: 421 KEGASLTEEELIAFCRERLAAY 442
Score = 110 bits (277), Expect = 8e-27
Identities = 40/76 (52%), Positives = 50/76 (65%)
Query: 52 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
EDGY +V R KDMII GG N+YP+EIEE + +HP VLEA GVPD GE V + L
Sbjct: 361 EDGYFYIVDRKKDMIIVGGFNVYPREIEEVLYSHPAVLEAAVVGVPDPYRGEAVKAFVVL 420
Query: 112 KENAKLNADDIRTFCK 127
KE A L +++ FC+
Sbjct: 421 KEGASLTEEELIAFCR 436
>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated.
Length = 521
Score = 109 bits (275), Expect = 2e-26
Identities = 40/85 (47%), Positives = 56/85 (65%)
Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
+ EDGY + RIKD+II GGENIYP+E+E+ + HP V E GVPDE+ GE
Sbjct: 404 YIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAV 463
Query: 341 IKLKENAKLNADDIRTFCKGKVSKF 365
+ LK A L+A ++R F +G+++KF
Sbjct: 464 VVLKPGATLDAKELRAFLRGRLAKF 488
Score = 105 bits (264), Expect = 7e-25
Identities = 38/82 (46%), Positives = 53/82 (64%)
Query: 49 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 108
+ EDGY + RIKD+II GGENIYP+E+E+ + HP V E GVPDE+ GE
Sbjct: 404 YIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAV 463
Query: 109 IKLKENAKLNADDIRTFCKGKV 130
+ LK A L+A ++R F +G++
Sbjct: 464 VVLKPGATLDAKELRAFLRGRL 485
>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases
II [Lipid metabolism / Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 534
Score = 108 bits (271), Expect = 7e-26
Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 2/87 (2%)
Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
+ EDGY +VGR+KD+II GGENIYP+EIE + HP V EA GVPDER GE V
Sbjct: 410 YVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAV 469
Query: 341 IKLKE--NAKLNADDIRTFCKGKVSKF 365
+ LK +A+L A+++R F + +++ +
Sbjct: 470 VVLKPGGDAELTAEELRAFLRKRLALY 496
Score = 107 bits (268), Expect = 1e-25
Identities = 43/91 (47%), Positives = 59/91 (64%), Gaps = 2/91 (2%)
Query: 42 FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
+ D + EDGY +VGR+KD+II GGENIYP+EIE + HP V EA GVPDER
Sbjct: 403 LRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEAAVVGVPDERW 462
Query: 102 GEEVGISIKLKE--NAKLNADDIRTFCKGKV 130
GE V + LK +A+L A+++R F + ++
Sbjct: 463 GERVVAVVVLKPGGDAELTAEELRAFLRKRL 493
>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase
(FACL) similar to Fum10p of Gibberella moniliformis.
FACL catalyzes the formation of fatty acyl-CoA in a
two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions. Fum10p is a fatty acid CoA ligase
involved in the synthesis of fumonisin, a polyketide
mycotoxin, in Gibberella moniliformis.
Length = 345
Score = 104 bits (262), Expect = 2e-25
Identities = 41/101 (40%), Positives = 63/101 (62%), Gaps = 2/101 (1%)
Query: 42 FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
F + D L EDGY + GRIK++I RGGE I P+E+EE + HP V EA +GVPDE
Sbjct: 227 FRTGDLGYLDEDGYLFLTGRIKELINRGGEKISPREVEEVLLRHPAVAEAVVFGVPDELY 286
Query: 102 GEEVGISIKLKENAKLNADDIRTFCKGKVKR-KI-SCIFII 140
GEEV ++ L+ ++K+ +++R F + ++ K+ I +
Sbjct: 287 GEEVAAAVVLRADSKVTIEELRDFARKRLAAFKVPKKILFV 327
Score = 103 bits (258), Expect = 8e-25
Identities = 38/85 (44%), Positives = 58/85 (68%)
Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
L EDGY + GRIK++I RGGE I P+E+EE + HP V EA +GVPDE GEEV +
Sbjct: 234 YLDEDGYLFLTGRIKELINRGGEKISPREVEEVLLRHPAVAEAVVFGVPDELYGEEVAAA 293
Query: 341 IKLKENAKLNADDIRTFCKGKVSKF 365
+ L+ ++K+ +++R F + +++ F
Sbjct: 294 VVLRADSKVTIEELRDFARKRLAAF 318
>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase.
2,3-dihydroxybenzoate-AMP ligase activates
2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP
with the release of pyrophosphate. However, it can also
catalyze the ATP-PPi exchange for 2,3-DHB analogs, such
as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB
and 2,5-DHB, but with less efficiency. Proteins in this
family are the stand-alone adenylation components of
non-ribosomal peptide synthases (NRPSs) involved in the
biosynthesis of siderophores, which are low molecular
weight iron-chelating compounds synthesized by many
bacteria to aid in the acquisition of this vital trace
elements. In Escherichia coli, the
2,3-dihydroxybenzoate-AMP ligase is called EntE, the
adenylation component of the enterobactin NRPS system.
Length = 483
Score = 103 bits (260), Expect = 2e-24
Identities = 34/88 (38%), Positives = 51/88 (57%)
Query: 42 FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
+ + D + DGY +VVGRIKD I RGGE I P+EIE + +HP V +A G+PDE +
Sbjct: 366 YRTGDLVRIDADGYYRVVGRIKDQINRGGEKISPEEIENLLLSHPAVADAAVVGMPDEVL 425
Query: 102 GEEVGISIKLKENAKLNADDIRTFCKGK 129
GE + + + A ++R F + +
Sbjct: 426 GERICAFVVPRGGAAPTLAELRAFLREQ 453
Score = 102 bits (257), Expect = 4e-24
Identities = 35/87 (40%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 280 FVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGI 339
+ DGY +VVGRIKD I RGGE I P+EIE + +HP V +A G+PDE +GE +
Sbjct: 372 VRIDADGYYRVVGRIKDQINRGGEKISPEEIENLLLSHPAVADAAVVGMPDEVLGERICA 431
Query: 340 SIKLKENAKLNADDIRTFCKGK-VSKF 365
+ + A ++R F + + ++KF
Sbjct: 432 FVVPRGGAAPTLAELRAFLREQGLAKF 458
>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated.
Length = 513
Score = 99 bits (250), Expect = 4e-23
Identities = 37/85 (43%), Positives = 53/85 (62%)
Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
L E+GY +V R KDM I GG N+YP E+EE + HP V EA GVPDER+GE
Sbjct: 401 RLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAY 460
Query: 341 IKLKENAKLNADDIRTFCKGKVSKF 365
+ LK A+L +++ +C+ ++K+
Sbjct: 461 VVLKPGAELTEEELIAYCREHLAKY 485
Score = 99.2 bits (248), Expect = 7e-23
Identities = 40/91 (43%), Positives = 53/91 (58%), Gaps = 5/91 (5%)
Query: 49 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 108
L E+GY +V R KDM I GG N+YP E+EE + HP V EA GVPDER+GE
Sbjct: 401 RLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAY 460
Query: 109 IKLKENAKLNADDIRTFCKG-----KVKRKI 134
+ LK A+L +++ +C+ KV R I
Sbjct: 461 VVLKPGAELTEEELIAYCREHLAKYKVPRSI 491
>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I. This
family includes acyl- and aryl-CoA ligases, as well as
the adenylation domain of nonribosomal peptide
synthetases and firefly luciferases. The
adenylate-forming enzymes catalyze an ATP-dependent
two-step reaction to first activate a carboxylate
substrate as an adenylate and then transfer the
carboxylate to the pantetheine group of either coenzyme
A or an acyl-carrier protein. The active site of the
domain is located at the interface of a large N-terminal
subdomain and a smaller C-terminal subdomain.
Length = 338
Score = 94.3 bits (235), Expect = 9e-22
Identities = 37/98 (37%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 42 FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
+ + D L E+GY + GR KD+I GGEN+YP E+E + HP V EA GVPDE
Sbjct: 226 YRTGDLGYLDEEGYLYITGRSKDLIKVGGENVYPAEVESVLLQHPAVAEAAVVGVPDEDR 285
Query: 102 GEEVGISIKLKENAKLNADDIRTFCK-----GKVKRKI 134
GE + + L+ A A++++ + KV R I
Sbjct: 286 GERIVAFVVLRPGADALAEELKAHLRERLAPYKVPRVI 323
Score = 92.0 bits (229), Expect = 7e-21
Identities = 32/79 (40%), Positives = 46/79 (58%)
Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
L E+GY + GR KD+I GGEN+YP E+E + HP V EA GVPDE GE +
Sbjct: 233 YLDEEGYLYITGRSKDLIKVGGENVYPAEVESVLLQHPAVAEAAVVGVPDEDRGERIVAF 292
Query: 341 IKLKENAKLNADDIRTFCK 359
+ L+ A A++++ +
Sbjct: 293 VVLRPGADALAEELKAHLR 311
>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called
cyclohex-1-ene-1-carboxylate:CoA ligase).
Cyclohexanecarboxylate-CoA ligase activates the
aliphatic ring compound, cyclohexanecarboxylate, for
degradation. It catalyzes the synthesis of
cyclohexanecarboxylate-CoA thioesters in a two-step
reaction involving the formation of
cyclohexanecarboxylate-AMP anhydride, followed by the
nucleophilic substitution of AMP by CoA.
Length = 437
Score = 95.4 bits (238), Expect = 1e-21
Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 42 FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
F + D L DGY ++ GR KD+IIRGGENI +EIE+ + HP V E +PDER+
Sbjct: 318 FRTGDLGRLDADGYLRITGRKKDIIIRGGENISAREIEDLLLRHPAVAEVAVVAMPDERL 377
Query: 102 GEEVGISIKLKENAKLNADDIRTFCKGK--VKRKI 134
GE V + A L ++ + K+K
Sbjct: 378 GERVCAVVVPAPGASLTLAELTEHLAAQGLAKQKW 412
Score = 94.2 bits (235), Expect = 2e-21
Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
L DGY ++ GR KD+IIRGGENI +EIE+ + HP V E +PDER+GE V
Sbjct: 325 RLDADGYLRITGRKKDIIIRGGENISAREIEDLLLRHPAVAEVAVVAMPDERLGERVCAV 384
Query: 341 IKLKENAKLNADDIRTFCKGK-VSK 364
+ A L ++ + ++K
Sbjct: 385 VVPAPGASLTLAELTEHLAAQGLAK 409
>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS). MCS catalyzes the
formation of malonyl-CoA in a two-step reaction
consisting of the adenylation of malonate with ATP,
followed by malonyl transfer from malonyl-AMP to CoA.
Malonic acid and its derivatives are the building blocks
of polyketides and malonyl-CoA serves as the substrate
of polyketide synthases. Malonyl-CoA synthetase has
broad substrate tolerance and can activate a variety of
malonyl acid derivatives. MCS may play an important role
in biosynthesis of polyketides, the important secondary
metabolites with therapeutic and agrochemical utility.
Length = 430
Score = 93.5 bits (233), Expect = 5e-21
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 281 VLREDGYGQVVGRIKDMIIR-GGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGI 339
V+ EDGY +++GR D II+ GG + EIEE + HP V E GVPD GE V
Sbjct: 323 VVDEDGYYRILGRKSDDIIKSGGYKVSALEIEEALLEHPGVAEVAVIGVPDPDWGEAVVA 382
Query: 340 SIKLKENAKLNADDIRTFCKGKVSKF 365
+ + A L ++R + + K++ +
Sbjct: 383 VVVPEAGAALTLAELRAWAREKLAPY 408
Score = 91.5 bits (228), Expect = 2e-20
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 42 FLSRDQFVLREDGYGQVVGRIKDMIIR-GGENIYPKEIEEFIQTHPNVLEAYAYGVPDER 100
F + D V+ EDGY +++GR D II+ GG + EIEE + HP V E GVPD
Sbjct: 316 FKTGDVGVVDEDGYYRILGRKSDDIIKSGGYKVSALEIEEALLEHPGVAEVAVIGVPDPD 375
Query: 101 MGEEVGISIKLKENAKLNADDIRTFCKGK 129
GE V + + A L ++R + + K
Sbjct: 376 WGEAVVAVVVPEAGAALTLAELRAWAREK 404
>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid
CoA ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions. Members of this
family include DitJ from Pseudomonas and similar
proteins.
Length = 421
Score = 91.5 bits (228), Expect = 2e-20
Identities = 31/86 (36%), Positives = 42/86 (48%)
Query: 280 FVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGI 339
EDG+ V R KD I R GENI E+E I HP V EA VP E +EV
Sbjct: 310 GRRDEDGFLYFVDRKKDAIRRRGENISSYEVEAAILAHPAVAEAAVVAVPSELGEDEVKA 369
Query: 340 SIKLKENAKLNADDIRTFCKGKVSKF 365
+ L+ L+ + + FC+ ++ F
Sbjct: 370 VVVLRPGETLDPEALLEFCRDRLPYF 395
Score = 90.3 bits (225), Expect = 5e-20
Identities = 32/89 (35%), Positives = 45/89 (50%)
Query: 42 FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
F + D+ EDG+ V R KD I R GENI E+E I HP V EA VP E
Sbjct: 304 FHTGDRGRRDEDGFLYFVDRKKDAIRRRGENISSYEVEAAILAHPAVAEAAVVAVPSELG 363
Query: 102 GEEVGISIKLKENAKLNADDIRTFCKGKV 130
+EV + L+ L+ + + FC+ ++
Sbjct: 364 EDEVKAVVVLRPGETLDPEALLEFCRDRL 392
>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated.
Length = 573
Score = 91.2 bits (227), Expect = 5e-20
Identities = 35/87 (40%), Positives = 56/87 (64%)
Query: 46 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 105
D V+ EDG+ ++V RIK++II GG N+YP E+EE ++ HP V +A G+P E EEV
Sbjct: 451 DVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEV 510
Query: 106 GISIKLKENAKLNADDIRTFCKGKVKR 132
++ L+ A L+ + +R +C+ + R
Sbjct: 511 VAAVVLEPGAALDPEGLRAYCREHLTR 537
Score = 89.7 bits (223), Expect = 1e-19
Identities = 33/85 (38%), Positives = 57/85 (67%)
Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
V+ EDG+ ++V RIK++II GG N+YP E+EE ++ HP V +A G+P E EEV +
Sbjct: 454 VMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAA 513
Query: 341 IKLKENAKLNADDIRTFCKGKVSKF 365
+ L+ A L+ + +R +C+ ++++
Sbjct: 514 VVLEPGAALDPEGLRAYCREHLTRY 538
>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated.
Length = 557
Score = 89.3 bits (222), Expect = 2e-19
Identities = 40/86 (46%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Query: 42 FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
F + D V+ E GY ++V R KDMI+ G N+YP EIEE + +HP VLE A GVPDE
Sbjct: 437 FRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHS 496
Query: 102 GEEVGISIKLKENAKLNADDIRTFCK 127
GE V + + +K++ L +D++ FCK
Sbjct: 497 GEAVKLFV-VKKDPALTEEDVKAFCK 521
Score = 87.8 bits (218), Expect = 6e-19
Identities = 38/79 (48%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
V+ E GY ++V R KDMI+ G N+YP EIEE + +HP VLE A GVPDE GE V +
Sbjct: 444 VMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLF 503
Query: 341 IKLKENAKLNADDIRTFCK 359
+ +K++ L +D++ FCK
Sbjct: 504 V-VKKDPALTEEDVKAFCK 521
>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as
O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or
MenE). O-succinylbenzoic acid-CoA synthase catalyzes
the coenzyme A (CoA)- and ATP-dependent conversion of
o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The
reaction is the fourth step of the biosynthesis pathway
of menaquinone (vitamin K2). In certain bacteria,
menaquinone is used during fumarate reduction in
anaerobic respiration. In cyanobacteria, the product of
the menaquinone pathway is phylloquinone
(2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used
exclusively as an electron transfer cofactor in
Photosystem 1. In green sulfur bacteria and
heliobacteria, menaquinones are used as loosely bound
secondary electron acceptors in the photosynthetic
reaction center.
Length = 407
Score = 88.4 bits (220), Expect = 2e-19
Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
+GY V+GR D+II GGENIYP+EIE + HP V EA GVPD+ G+ +
Sbjct: 300 AEGYLYVLGRRDDLIISGGENIYPEEIEAVLLQHPAVEEAAVVGVPDDEWGQRPVAFVVP 359
Query: 344 KENAKLNADDIRTFCKGKVSKF 365
+ ++ ++++ F K++K+
Sbjct: 360 -NDDPVSVEELQAFLADKLAKY 380
Score = 83.0 bits (206), Expect = 1e-17
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 42 FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
F + D L +GY V+GR D+II GGENIYP+EIE + HP V EA GVPD+
Sbjct: 290 FHTGDLGYLDAEGYLYVLGRRDDLIISGGENIYPEEIEAVLLQHPAVEEAAVVGVPDDEW 349
Query: 102 GEEVGISIKLKENAKLNADDIRTFCKGK 129
G+ + + ++ ++++ F K
Sbjct: 350 GQRPVAFVVP-NDDPVSVEELQAFLADK 376
>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated.
Length = 549
Score = 88.4 bits (220), Expect = 4e-19
Identities = 30/82 (36%), Positives = 49/82 (59%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
EDG V GR DMI+ GGEN++P E+E+ + HP+V+EA GV DE G+ + +
Sbjct: 439 EDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVK 498
Query: 344 KENAKLNADDIRTFCKGKVSKF 365
A L+ D I+ + + ++++
Sbjct: 499 APGAALDEDAIKDYVRDNLARY 520
Score = 87.7 bits (218), Expect = 7e-19
Identities = 31/81 (38%), Positives = 47/81 (58%)
Query: 52 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
EDG V GR DMI+ GGEN++P E+E+ + HP+V+EA GV DE G+ + +
Sbjct: 439 EDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVK 498
Query: 112 KENAKLNADDIRTFCKGKVKR 132
A L+ D I+ + + + R
Sbjct: 499 APGAALDEDAIKDYVRDNLAR 519
>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated.
Length = 496
Score = 86.5 bits (214), Expect = 1e-18
Identities = 31/82 (37%), Positives = 45/82 (54%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
EDG+ +VGR K+MII GGENIYP E+E+ I +V E G + GE I
Sbjct: 383 EDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVK 442
Query: 344 KENAKLNADDIRTFCKGKVSKF 365
K ++ L D+ C+ ++K+
Sbjct: 443 KSSSVLIEKDVIEHCRLFLAKY 464
Score = 85.7 bits (212), Expect = 3e-18
Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 52 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
EDG+ +VGR K+MII GGENIYP E+E+ I +V E G + GE I
Sbjct: 383 EDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVK 442
Query: 112 KENAKLNADDIRTFCKGKV-KRKISCIFIII 141
K ++ L D+ C+ + K KI + +
Sbjct: 443 KSSSVLIEKDVIEHCRLFLAKYKIPKEIVFL 473
>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated.
Length = 523
Score = 86.1 bits (214), Expect = 2e-18
Identities = 33/85 (38%), Positives = 49/85 (57%)
Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
V+ E+GY VV R KDMI GGEN+ +E+EE + THP V E G+PD + E V
Sbjct: 404 VMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAV 463
Query: 341 IKLKENAKLNADDIRTFCKGKVSKF 365
+ K A + D++ C+ +++ F
Sbjct: 464 VVPKAGATVTEDELIAHCRARLAGF 488
Score = 84.2 bits (209), Expect = 7e-18
Identities = 35/88 (39%), Positives = 49/88 (55%)
Query: 42 FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
F S D V+ E+GY VV R KDMI GGEN+ +E+EE + THP V E G+PD +
Sbjct: 397 FHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKW 456
Query: 102 GEEVGISIKLKENAKLNADDIRTFCKGK 129
E V + K A + D++ C+ +
Sbjct: 457 IEAVTAVVVPKAGATVTEDELIAHCRAR 484
>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated.
Length = 562
Score = 86.0 bits (213), Expect = 2e-18
Identities = 29/85 (34%), Positives = 51/85 (60%)
Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
+++EDGY ++V R KDMI+ G N+YP E+E+ + P VL+ A GVPDE+ GE + +
Sbjct: 442 LIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVF 501
Query: 341 IKLKENAKLNADDIRTFCKGKVSKF 365
+ +K L + + + ++ +
Sbjct: 502 VVVKPGETLTKEQVMEHMRANLTGY 526
Score = 85.2 bits (211), Expect = 4e-18
Identities = 30/85 (35%), Positives = 50/85 (58%)
Query: 46 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 105
D +++EDGY ++V R KDMI+ G N+YP E+E+ + P VL+ A GVPDE+ GE +
Sbjct: 439 DIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAI 498
Query: 106 GISIKLKENAKLNADDIRTFCKGKV 130
+ + +K L + + + +
Sbjct: 499 KVFVVVKPGETLTKEQVMEHMRANL 523
>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar
to LC-FACS from Thermus thermophiles and Arabidopsis.
This family includes fatty acyl-CoA synthetases that can
activate medium to long-chain fatty acids. These enzymes
catalyze the ATP-dependent acylation of fatty acids in a
two-step reaction. The carboxylate substrate first
reacts with ATP to form an acyl-adenylate intermediate,
which then reacts with CoA to produce an acyl-CoA ester.
Fatty acyl-CoA synthetases are responsible for fatty
acid degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid. Also included
in this family are acyl activating enzymes from
Arabidopsis, which contains a large number of proteins
from this family with up to 63 different genes, many of
which are uncharacterized.
Length = 520
Score = 85.4 bits (212), Expect = 3e-18
Identities = 33/85 (38%), Positives = 49/85 (57%)
Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
V+ DGY ++ R KD+II GGENI E+E + HP VLEA PDE+ GE
Sbjct: 410 VVHPDGYIEIKDRSKDIIISGGENISSIEVEGVLYKHPAVLEAAVVARPDEKWGETPCAF 469
Query: 341 IKLKENAKLNADDIRTFCKGKVSKF 365
+ LK A + +++ +C+ K++ F
Sbjct: 470 VVLKPGASVTEEELIEYCREKLAHF 494
Score = 85.0 bits (211), Expect = 5e-18
Identities = 35/88 (39%), Positives = 49/88 (55%)
Query: 42 FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
F S D V+ DGY ++ R KD+II GGENI E+E + HP VLEA PDE+
Sbjct: 403 FHSGDLAVVHPDGYIEIKDRSKDIIISGGENISSIEVEGVLYKHPAVLEAAVVARPDEKW 462
Query: 102 GEEVGISIKLKENAKLNADDIRTFCKGK 129
GE + LK A + +++ +C+ K
Sbjct: 463 GETPCAFVVLKPGASVTEEELIEYCREK 490
>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL). CBAL catalyzes
the conversion of 4-chlorobenzoate (4-CB) to
4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step
adenylation and thioester-forming reactions.
4-Chlorobenzoate (4-CBA) is an environmental pollutant
derived from microbial breakdown of aromatic pollutants,
such as polychlorinated biphenyls (PCBs), DDT, and
certain herbicides. The 4-CBA degrading pathway converts
4-CBA to the metabolite 4-hydroxybezoate (4-HBA),
allowing some soil-dwelling microbes to utilize 4-CBA as
an alternate carbon source. This pathway consists of
three chemical steps catalyzed by 4-CBA-CoA ligase,
4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in
sequential reactions.
Length = 495
Score = 84.9 bits (210), Expect = 4e-18
Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 53 DGYGQVV--GRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIK 110
D G V GR+ DMII GGENI+P E+E + P V E G+PDER G+ V +
Sbjct: 387 DPSGTVRILGRVDDMIISGGENIHPSEVERVLGRAPGVTEVVVIGLPDERWGQSVTACVV 446
Query: 111 LKENAKLNADDIRTFC 126
+E L+AD + TFC
Sbjct: 447 PREGETLSADALDTFC 462
Score = 84.9 bits (210), Expect = 4e-18
Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 285 DGYGQVV--GRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIK 342
D G V GR+ DMII GGENI+P E+E + P V E G+PDER G+ V +
Sbjct: 387 DPSGTVRILGRVDDMIISGGENIHPSEVERVLGRAPGVTEVVVIGLPDERWGQSVTACVV 446
Query: 343 LKENAKLNADDIRTFC 358
+E L+AD + TFC
Sbjct: 447 PREGETLSADALDTFC 462
>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated.
Length = 502
Score = 84.2 bits (209), Expect = 8e-18
Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 9/110 (8%)
Query: 265 KAPDRKKCSQRPRYQF------VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHP 318
P++ ++ P L EDGY + R DMII GG NIYP+EIE + THP
Sbjct: 356 NDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHP 415
Query: 319 NVLEAYAYGVPDERMGEEVGISIKLKENAKLN---ADDIRTFCKGKVSKF 365
V + +GVPDE MGE V ++ + A A ++ + +G+++ +
Sbjct: 416 KVADVAVFGVPDEEMGERVKAVVQPADGADAGDALAAELIAWLRGRLAHY 465
Score = 80.7 bits (200), Expect = 1e-16
Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 50 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 109
L EDGY + R DMII GG NIYP+EIE + THP V + +GVPDE MGE V +
Sbjct: 379 LDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVV 438
Query: 110 KLKENAKLN---ADDIRTFCKGKVKR 132
+ + A A ++ + +G++
Sbjct: 439 QPADGADAGDALAAELIAWLRGRLAH 464
>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA. PimA, a member of
a large family of acyl-CoA ligases, is found in a
characteristic operon pimFABCDE for the metabolism of
pimelate and related compounds. It is found, so far, in
Bradyrhizobium japonicum and several strains of
Rhodopseudomonas palustris. PimA from R. palustris was
shown to be active as a CoA ligase for C(7) to C(14)
dicarboxylates and fatty acids.
Length = 541
Score = 83.9 bits (207), Expect = 1e-17
Identities = 39/92 (42%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 42 FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
FL+ D + DGY +V R KDMII GG N+YP+ IE+ I HP V E G+PD+
Sbjct: 423 FLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYR 482
Query: 102 GEEVGISIKLKENAK-LNADDIRTFCKGKVKR 132
GE +KL+ AK + D++R F GK+ +
Sbjct: 483 GEAAKAFVKLRPGAKPFSLDELRAFLAGKLGK 514
Score = 82.7 bits (204), Expect = 3e-17
Identities = 37/82 (45%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
DGY +V R KDMII GG N+YP+ IE+ I HP V E G+PD+ GE +KL
Sbjct: 433 TDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKL 492
Query: 344 KENAK-LNADDIRTFCKGKVSK 364
+ AK + D++R F GK+ K
Sbjct: 493 RPGAKPFSLDELRAFLAGKLGK 514
>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated.
Length = 524
Score = 83.5 bits (207), Expect = 1e-17
Identities = 30/76 (39%), Positives = 48/76 (63%)
Query: 52 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
EDG+ +V R KDMI+ GG N++P+E+E+ + HP V + GVPDE+ GE V + L
Sbjct: 405 EDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVL 464
Query: 112 KENAKLNADDIRTFCK 127
+ A ++A +++ K
Sbjct: 465 RPGAAVDAAELQAHVK 480
Score = 83.5 bits (207), Expect = 1e-17
Identities = 30/76 (39%), Positives = 48/76 (63%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
EDG+ +V R KDMI+ GG N++P+E+E+ + HP V + GVPDE+ GE V + L
Sbjct: 405 EDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVL 464
Query: 344 KENAKLNADDIRTFCK 359
+ A ++A +++ K
Sbjct: 465 RPGAAVDAAELQAHVK 480
>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated.
Length = 534
Score = 83.0 bits (205), Expect = 2e-17
Identities = 34/84 (40%), Positives = 53/84 (63%)
Query: 282 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341
L G + GRIK++I RGGE I P+ +E + +HPNV+EA +GVPD+ GE V I
Sbjct: 418 LSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVI 477
Query: 342 KLKENAKLNADDIRTFCKGKVSKF 365
+E+A A+++ FC+ +++ F
Sbjct: 478 VPRESAPPTAEELVQFCRERLAAF 501
Score = 80.3 bits (198), Expect = 2e-16
Identities = 33/81 (40%), Positives = 51/81 (62%)
Query: 50 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 109
L G + GRIK++I RGGE I P+ +E + +HPNV+EA +GVPD+ GE V I
Sbjct: 418 LSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVI 477
Query: 110 KLKENAKLNADDIRTFCKGKV 130
+E+A A+++ FC+ ++
Sbjct: 478 VPRESAPPTAEELVQFCRERL 498
>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated.
Length = 528
Score = 82.8 bits (205), Expect = 2e-17
Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 282 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341
L G+ + GR DM I GG N+YP+EIEE + THP V E GVPD G EVG+++
Sbjct: 404 LDARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWG-EVGVAV 462
Query: 342 -KLKENAKLNADDIRTFCKGKVSKF 365
++ A ++ ++ + GKV+++
Sbjct: 463 CVARDGAPVDEAELLAWLDGKVARY 487
Score = 82.4 bits (204), Expect = 3e-17
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 50 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 109
L G+ + GR DM I GG N+YP+EIEE + THP V E GVPD G EVG+++
Sbjct: 404 LDARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWG-EVGVAV 462
Query: 110 -KLKENAKLNADDIRTFCKGKVKR 132
++ A ++ ++ + GKV R
Sbjct: 463 CVARDGAPVDEAELLAWLDGKVAR 486
>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional.
Length = 516
Score = 82.0 bits (202), Expect = 4e-17
Identities = 33/84 (39%), Positives = 48/84 (57%)
Query: 282 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341
L G +VGR DMII GGEN+YP+ +E + HP V + GVPDER G + +
Sbjct: 406 LDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFV 465
Query: 342 KLKENAKLNADDIRTFCKGKVSKF 365
L + ++A +R + K +VS+F
Sbjct: 466 VLHPGSGVDAAQLRDYLKDRVSRF 489
Score = 79.3 bits (195), Expect = 3e-16
Identities = 33/87 (37%), Positives = 47/87 (54%)
Query: 46 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 105
D L G +VGR DMII GGEN+YP+ +E + HP V + GVPDER G +
Sbjct: 402 DMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRL 461
Query: 106 GISIKLKENAKLNADDIRTFCKGKVKR 132
+ L + ++A +R + K +V R
Sbjct: 462 AAFVVLHPGSGVDAAQLRDYLKDRVSR 488
>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 483
Score = 81.5 bits (202), Expect = 7e-17
Identities = 35/84 (41%), Positives = 58/84 (69%), Gaps = 2/84 (2%)
Query: 282 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341
L E+G+ V+ R D+II GGENIYP EIEE + +HP V EA GVPD++ G +V ++
Sbjct: 370 LDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWG-QVPVAF 428
Query: 342 KLKENAKLNADDIRTFCKGKVSKF 365
+ ++ ++ +++R FC+ K++K+
Sbjct: 429 -VVKSGEVTEEELRHFCEEKLAKY 451
Score = 79.2 bits (196), Expect = 3e-16
Identities = 36/86 (41%), Positives = 58/86 (67%), Gaps = 3/86 (3%)
Query: 50 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 109
L E+G+ V+ R D+II GGENIYP EIEE + +HP V EA GVPD++ G +V ++
Sbjct: 370 LDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWG-QVPVAF 428
Query: 110 KLKENAKLNADDIRTFCKGKV-KRKI 134
+ ++ ++ +++R FC+ K+ K K+
Sbjct: 429 -VVKSGEVTEEELRHFCEEKLAKYKV 453
>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated.
Length = 488
Score = 80.6 bits (199), Expect = 1e-16
Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 285 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVG-ISIKL 343
DG+ VV R KDM I GGEN+YP EIE + HP + E G+ D + G EVG ++I
Sbjct: 374 DGFFWVVDRKKDMFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWG-EVGYLAIVP 432
Query: 344 KENAKLNADDIRTFCKGKVSKF 365
+ A L+ + IR+ +++K+
Sbjct: 433 ADGAPLDLERIRSHLSTRLAKY 454
Score = 78.7 bits (194), Expect = 6e-16
Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 53 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVG-ISIKL 111
DG+ VV R KDM I GGEN+YP EIE + HP + E G+ D + G EVG ++I
Sbjct: 374 DGFFWVVDRKKDMFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWG-EVGYLAIVP 432
Query: 112 KENAKLNADDIRTFCKGKVKR 132
+ A L+ + IR+ ++ +
Sbjct: 433 ADGAPLDLERIRSHLSTRLAK 453
>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated.
Length = 504
Score = 79.5 bits (197), Expect = 3e-16
Identities = 35/82 (42%), Positives = 47/82 (57%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
E GY +VGR KD+II GG N+YPKE+E I P V+E+ GVP GE V +
Sbjct: 389 ERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVP 448
Query: 344 KENAKLNADDIRTFCKGKVSKF 365
K A L+ I KG++++F
Sbjct: 449 KPGAALDEAAILAALKGRLARF 470
Score = 76.1 bits (188), Expect = 3e-15
Identities = 37/91 (40%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 52 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
E GY +VGR KD+II GG N+YPKE+E I P V+E+ GVP GE V +
Sbjct: 389 ERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVP 448
Query: 112 KENAKLNADDIRTFCKGKVKR-KI--SCIFI 139
K A L+ I KG++ R K F+
Sbjct: 449 KPGAALDEAAILAALKGRLARFKQPKRVFFV 479
>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated.
Length = 632
Score = 78.8 bits (195), Expect = 5e-16
Identities = 32/80 (40%), Positives = 42/80 (52%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
DGY + GR KD+IIRGG NI P IEE + HP V A A G PD GE ++L
Sbjct: 457 ADGYFWLTGRAKDLIIRGGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQL 516
Query: 344 KENAKLNADDIRTFCKGKVS 363
K A ++ F + ++
Sbjct: 517 KPGASATEAELLAFARDHIA 536
Score = 78.5 bits (194), Expect = 7e-16
Identities = 32/79 (40%), Positives = 41/79 (51%)
Query: 52 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
DGY + GR KD+IIRGG NI P IEE + HP V A A G PD GE ++L
Sbjct: 457 ADGYFWLTGRAKDLIIRGGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQL 516
Query: 112 KENAKLNADDIRTFCKGKV 130
K A ++ F + +
Sbjct: 517 KPGASATEAELLAFARDHI 535
>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 562
Score = 77.6 bits (191), Expect = 1e-15
Identities = 37/98 (37%), Positives = 57/98 (58%), Gaps = 6/98 (6%)
Query: 42 FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
F + D V+ DG+ ++V R KD+II G N+YP EIE+ + HP V A GVPDER
Sbjct: 443 FKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVPDERS 502
Query: 102 GEEVGISIKLKENAKLNADDIRTFCKG-----KVKRKI 134
GE V + + ++ L+ ++++ +CK KV + I
Sbjct: 503 GEAVKLFVVARD-PGLSVEELKAYCKENFTGYKVPKHI 539
Score = 76.0 bits (187), Expect = 4e-15
Identities = 32/79 (40%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
V+ DG+ ++V R KD+II G N+YP EIE+ + HP V A GVPDER GE V +
Sbjct: 450 VIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLF 509
Query: 341 IKLKENAKLNADDIRTFCK 359
+ ++ L+ ++++ +CK
Sbjct: 510 VVARD-PGLSVEELKAYCK 527
>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated.
Length = 560
Score = 77.0 bits (190), Expect = 2e-15
Identities = 35/82 (42%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Query: 46 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 105
D V+ E+G+ ++V R KDMI+ G N+YP EIE+ + HP VLE A GVP E GE V
Sbjct: 438 DIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAV 497
Query: 106 GISIKLKENAKLNADDIRTFCK 127
I + +K++ L +++ T C+
Sbjct: 498 KIFV-VKKDPSLTEEELITHCR 518
Score = 77.0 bits (190), Expect = 2e-15
Identities = 34/79 (43%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
V+ E+G+ ++V R KDMI+ G N+YP EIE+ + HP VLE A GVP E GE V I
Sbjct: 441 VMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIF 500
Query: 341 IKLKENAKLNADDIRTFCK 359
+ +K++ L +++ T C+
Sbjct: 501 V-VKKDPSLTEEELITHCR 518
>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 359
Score = 76.2 bits (188), Expect = 2e-15
Identities = 33/76 (43%), Positives = 42/76 (55%)
Query: 52 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
DGY + GR KD+IIRGG NI P+ IEE + HP V A A G PD GE ++L
Sbjct: 246 ADGYLWLTGRAKDLIIRGGHNIDPQMIEEALLRHPAVALAAAVGRPDAYAGELPVAYVQL 305
Query: 112 KENAKLNADDIRTFCK 127
K A + ++ F K
Sbjct: 306 KPGATVTEGELLAFVK 321
Score = 76.2 bits (188), Expect = 2e-15
Identities = 33/76 (43%), Positives = 42/76 (55%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
DGY + GR KD+IIRGG NI P+ IEE + HP V A A G PD GE ++L
Sbjct: 246 ADGYLWLTGRAKDLIIRGGHNIDPQMIEEALLRHPAVALAAAVGRPDAYAGELPVAYVQL 305
Query: 344 KENAKLNADDIRTFCK 359
K A + ++ F K
Sbjct: 306 KPGATVTEGELLAFVK 321
>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase;
Provisional.
Length = 560
Score = 76.8 bits (189), Expect = 3e-15
Identities = 34/82 (41%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
E G+ +V R KDMI+ G N+YP EIE+ I P VLE A GVPDE+ GE V + I +
Sbjct: 449 EQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVI-V 507
Query: 344 KENAKLNADDIRTFCKGKVSKF 365
K++ L A+D++ + ++ +
Sbjct: 508 KKDPALTAEDVKAHARANLTGY 529
Score = 76.1 bits (187), Expect = 5e-15
Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 52 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
E G+ +V R KDMI+ G N+YP EIE+ I P VLE A GVPDE+ GE V + I +
Sbjct: 449 EQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVI-V 507
Query: 112 KENAKLNADDIRTFCKGKVKR 132
K++ L A+D++ + +
Sbjct: 508 KKDPALTAEDVKAHARANLTG 528
>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase;
Provisional.
Length = 542
Score = 76.7 bits (189), Expect = 3e-15
Identities = 30/91 (32%), Positives = 48/91 (52%)
Query: 42 FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
F + D+ V DG+ + V RIKD I R GENI E+E+ + +HP V A + VP E
Sbjct: 402 FHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSELG 461
Query: 102 GEEVGISIKLKENAKLNADDIRTFCKGKVKR 132
+EV ++ L++ L + C+ ++
Sbjct: 462 EDEVMAAVVLRDGTALEPVALVRHCEPRLAY 492
Score = 76.7 bits (189), Expect = 3e-15
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 281 VLRE-DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGI 339
V+R+ DG+ + V RIKD I R GENI E+E+ + +HP V A + VP E +EV
Sbjct: 408 VVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMA 467
Query: 340 SIKLKENAKLNADDIRTFCKGKVSKF 365
++ L++ L + C+ +++ F
Sbjct: 468 AVVLRDGTALEPVALVRHCEPRLAYF 493
>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional.
Length = 511
Score = 76.3 bits (188), Expect = 4e-15
Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 11/120 (9%)
Query: 257 KRGLPAR-VKAPDRKKCSQRPRYQFV-------LREDGYGQVVGRIKDMIIRGGENIYPK 308
+ G P + P + ++ P + + EDGY + R MII GG NIYP+
Sbjct: 359 EGGRPFEYLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQ 418
Query: 309 EIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAD---DIRTFCKGKVSKF 365
E E + THP V +A +GVP+E +GEEV ++ + ++ FC+ ++S+
Sbjct: 419 EAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGVDPGPALAAELIAFCRQRLSRQ 478
Score = 74.0 bits (182), Expect = 2e-14
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 52 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
EDGY + R MII GG NIYP+E E + THP V +A +GVP+E +GEEV ++
Sbjct: 394 EDGYLYLTDRAAFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQP 453
Query: 112 KENAKLNAD---DIRTFCKGKVKR 132
+ ++ FC+ ++ R
Sbjct: 454 VDGVDPGPALAAELIAFCRQRLSR 477
>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 365
Score = 75.4 bits (186), Expect = 4e-15
Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 5/90 (5%)
Query: 50 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 109
+ DG ++GR I GGE ++P+E+EE ++ HP+V +A GVPDER G+ V +
Sbjct: 256 VEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQRVVAVV 315
Query: 110 KLKENAKLNADDIRTFCKG-----KVKRKI 134
+L+ A L+ ++R C+ K+ R I
Sbjct: 316 QLRAGAGLDLAELRDHCRQHLAGYKLPRAI 345
Score = 75.4 bits (186), Expect = 4e-15
Identities = 29/84 (34%), Positives = 51/84 (60%)
Query: 282 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341
+ DG ++GR I GGE ++P+E+EE ++ HP+V +A GVPDER G+ V +
Sbjct: 256 VEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQRVVAVV 315
Query: 342 KLKENAKLNADDIRTFCKGKVSKF 365
+L+ A L+ ++R C+ ++ +
Sbjct: 316 QLRAGAGLDLAELRDHCRQHLAGY 339
>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 350
Score = 75.4 bits (186), Expect = 4e-15
Identities = 29/84 (34%), Positives = 42/84 (50%)
Query: 44 SRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 103
+ D + E+GY VGR DMI G + P EIEE I HP V EA GVPD +G+
Sbjct: 235 TGDLVRMDEEGYLYFVGRKDDMIKTRGYRVSPTEIEEVICAHPLVAEAAVIGVPDPLLGQ 294
Query: 104 EVGISIKLKENAKLNADDIRTFCK 127
+ + + L+ ++ C+
Sbjct: 295 AIVAVVVSADGESLDEKELLKHCR 318
Score = 73.4 bits (181), Expect = 1e-14
Identities = 28/76 (36%), Positives = 39/76 (51%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
E+GY VGR DMI G + P EIEE I HP V EA GVPD +G+ + +
Sbjct: 243 EEGYLYFVGRKDDMIKTRGYRVSPTEIEEVICAHPLVAEAAVIGVPDPLLGQAIVAVVVS 302
Query: 344 KENAKLNADDIRTFCK 359
+ L+ ++ C+
Sbjct: 303 ADGESLDEKELLKHCR 318
>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated.
Length = 545
Score = 75.4 bits (186), Expect = 7e-15
Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 5/98 (5%)
Query: 42 FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
F + D VL DGY ++ R KD+II GGENI E+E+ + HP VL A PD +
Sbjct: 418 FHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDPKW 477
Query: 102 GEEVGISIKLKENAKLNADDIRTFCKG-----KVKRKI 134
GE ++LK+ A ++I C+ KV + +
Sbjct: 478 GEVPCAFVELKDGASATEEEIIAHCREHLAGFKVPKAV 515
Score = 75.0 bits (185), Expect = 1e-14
Identities = 32/85 (37%), Positives = 47/85 (55%)
Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
VL DGY ++ R KD+II GGENI E+E+ + HP VL A PD + GE
Sbjct: 425 VLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAF 484
Query: 341 IKLKENAKLNADDIRTFCKGKVSKF 365
++LK+ A ++I C+ ++ F
Sbjct: 485 VELKDGASATEEEIIAHCREHLAGF 509
>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated.
Length = 542
Score = 75.2 bits (185), Expect = 9e-15
Identities = 38/102 (37%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 42 FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
F S D E+GY VV R KDMII GGENIY E+E + +HP+++E G DE+
Sbjct: 401 FHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKW 460
Query: 102 GE-EVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIV 142
GE V ++ ++A L +D+ F ++ R + IV
Sbjct: 461 GEVPVAVAAVRNDDAALTLEDLAEFLTDRLARYKHPKALEIV 502
Score = 73.7 bits (181), Expect = 2e-14
Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE-EVGISIK 342
E+GY VV R KDMII GGENIY E+E + +HP+++E G DE+ GE V ++
Sbjct: 411 EEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAV 470
Query: 343 LKENAKLNADDIRTFCKGKVSKF 365
++A L +D+ F +++++
Sbjct: 471 RNDDAALTLEDLAEFLTDRLARY 493
>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated.
Length = 487
Score = 74.0 bits (182), Expect = 2e-14
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
E+G+ +VGR K+MI+ GG NI+P+EIE + HP V E GVPD GE+ IK
Sbjct: 373 EEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKG 432
Query: 344 KENAKLNADDIRTFCKGKVSKF 365
+ +++FC ++S F
Sbjct: 433 SATKQ----QLKSFCLQRLSSF 450
Score = 71.3 bits (175), Expect = 1e-13
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 45 RDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 104
RD E+G+ +VGR K+MI+ GG NI+P+EIE + HP V E GVPD GE+
Sbjct: 366 RDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEK 425
Query: 105 VGISIKLKENAKLNADDIRTFCKGK 129
IK + +++FC +
Sbjct: 426 PVAIIKGSATKQ----QLKSFCLQR 446
>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting
insects and 4-Coumarate-CoA Ligase (4CL). This family
contains two functionally unique groups of proteins; one
group is insect firefly luciferases and the other is
plant 4-coumarate:coenzyme A ligases. However, they
share significant sequence similarity in spite of their
functional diversity. Luciferase catalyzes the
production of light in the presence of MgATP, molecular
oxygen, and luciferin. In the first step, luciferin is
activated by acylation of its carboxylate group with
ATP, resulting in an enzyme-bound luciferyl adenylate.
In the second step, luciferyl adenylate reacts with
molecular oxygen, producing an enzyme-bound excited
state product (Luc=O*) and releasing AMP. This
excited-state product then decays to the ground state
(Luc=O), emitting a quantum of visible light.
4-coumarate:coenzyme A ligase is a key enzyme in the
phenylpropanoid metabolic pathway for monolignol and
flavonoid biosynthesis. It catalyzes the synthesis of
hydroxycinnamate-CoA thioesters in a two-step reaction,
involving the formation of hydroxycinnamate-AMP
anhydride and then the nucleophilic substitution of AMP
by CoA. The phenylpropanoid pathway is one of the most
important secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 487
Score = 73.8 bits (182), Expect = 2e-14
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
EDG +V R K++I G + P E+E + HP V +A G+PDE GE + L
Sbjct: 384 EDGNFYIVDRKKELIKYKGYQVPPAELEAVLLEHPKVADAAVIGIPDEVAGELPRAYVVL 443
Query: 344 KENAKLNADDIRTFCKGKVSKF 365
K +KL +++ + KV+K+
Sbjct: 444 KPGSKLTEQEVKDYVAKKVAKY 465
Score = 70.7 bits (174), Expect = 2e-13
Identities = 27/79 (34%), Positives = 41/79 (51%)
Query: 52 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
EDG +V R K++I G + P E+E + HP V +A G+PDE GE + L
Sbjct: 384 EDGNFYIVDRKKELIKYKGYQVPPAELEAVLLEHPKVADAAVIGIPDEVAGELPRAYVVL 443
Query: 112 KENAKLNADDIRTFCKGKV 130
K +KL +++ + KV
Sbjct: 444 KPGSKLTEQEVKDYVAKKV 462
>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional.
Length = 537
Score = 73.6 bits (181), Expect = 3e-14
Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 50 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 109
L E+G VVGR +MI+ GGEN+YP E+E+ + THP+V EA GV DE+ G+ + +
Sbjct: 426 LDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFV 485
Query: 110 KLKENAKLNADDIRTFCKG-----KVKRKIS 135
LK A + ++ + KV R I
Sbjct: 486 VLKPGASATPETLKQHVRDNLANYKVPRDIV 516
Score = 72.5 bits (178), Expect = 5e-14
Identities = 31/75 (41%), Positives = 46/75 (61%)
Query: 282 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341
L E+G VVGR +MI+ GGEN+YP E+E+ + THP+V EA GV DE+ G+ + +
Sbjct: 426 LDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFV 485
Query: 342 KLKENAKLNADDIRT 356
LK A + ++
Sbjct: 486 VLKPGASATPETLKQ 500
>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 509
Score = 73.2 bits (180), Expect = 3e-14
Identities = 30/84 (35%), Positives = 46/84 (54%)
Query: 282 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341
L DGY + R +DM+I GG NIYP EIE + P V + +G+PD GE + +
Sbjct: 389 LDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVV 448
Query: 342 KLKENAKLNADDIRTFCKGKVSKF 365
+ + A L+ DIR K +++ +
Sbjct: 449 EPQPGATLDEADIRAQLKARLAGY 472
Score = 71.3 bits (175), Expect = 1e-13
Identities = 35/104 (33%), Positives = 50/104 (48%), Gaps = 12/104 (11%)
Query: 43 LSRDQFV-------LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYG 95
+ R F+ L DGY + R +DM+I GG NIYP EIE + P V + +G
Sbjct: 375 IDRGGFITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFG 434
Query: 96 VPDERMGEEVGISIKLKENAKLNADDIRTFCKG-----KVKRKI 134
+PD GE + ++ + A L+ DIR K KV + I
Sbjct: 435 IPDAEFGEALMAVVEPQPGATLDEADIRAQLKARLAGYKVPKHI 478
>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase. This model
represents an enzyme, O-succinylbenzoate-CoA ligase,
which is involved in the fourth step of the menaquinone
biosynthesis pathway. O-succinylbenzoate-CoA ligase,
together with menB - naphtoate synthase, take
2-succinylbenzoate and convert it into 1,4-di-hydroxy-2-
naphtoate [Biosynthesis of cofactors, prosthetic groups,
and carriers, Menaquinone and ubiquinone].
Length = 436
Score = 72.9 bits (179), Expect = 4e-14
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 282 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341
L +G+ V+GR D+II GGENIYP+EIE + HP + EA PD G +V ++
Sbjct: 330 LDGEGFLYVLGRRDDLIISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWG-QVPVAY 388
Query: 342 KLKENAKLNADDIRTFCKGKVSKF 365
+ + ++ + + K++K+
Sbjct: 389 -IVSESDISQAKLIAYLTEKLAKY 411
Score = 69.0 bits (169), Expect = 8e-13
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 42 FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
F + D L +G+ V+GR D+II GGENIYP+EIE + HP + EA PD
Sbjct: 322 FNTGDIGELDGEGFLYVLGRRDDLIISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEW 381
Query: 102 GEEVGISIKLKENAKLNADDIRTFCKGKV-KRKI 134
G +V ++ + + ++ + + K+ K K+
Sbjct: 382 G-QVPVAY-IVSESDISQAKLIAYLTEKLAKYKV 413
>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. The fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family was shown catalyzing the
long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified from
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes uncharacterized FACS
proteins.
Length = 517
Score = 72.2 bits (178), Expect = 8e-14
Identities = 33/82 (40%), Positives = 45/82 (54%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
EDGY Q+ R KD+I GGE I E+E + HP V EA GVP E+ GE + L
Sbjct: 409 EDGYIQITDRAKDVIKSGGEWISSVELENALMAHPAVAEAAVVGVPHEKWGERPLAVVVL 468
Query: 344 KENAKLNADDIRTFCKGKVSKF 365
K AK+ +++ KV+K+
Sbjct: 469 KPGAKVTEEELLEHLAKKVAKW 490
Score = 68.0 bits (167), Expect = 2e-12
Identities = 32/81 (39%), Positives = 43/81 (53%)
Query: 52 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
EDGY Q+ R KD+I GGE I E+E + HP V EA GVP E+ GE + L
Sbjct: 409 EDGYIQITDRAKDVIKSGGEWISSVELENALMAHPAVAEAAVVGVPHEKWGERPLAVVVL 468
Query: 112 KENAKLNADDIRTFCKGKVKR 132
K AK+ +++ KV +
Sbjct: 469 KPGAKVTEEELLEHLAKKVAK 489
>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated.
Length = 497
Score = 71.8 bits (176), Expect = 1e-13
Identities = 32/84 (38%), Positives = 45/84 (53%)
Query: 282 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341
L E+G+ + R KDMII GGENI E+E I P V EA GV D+R GE + +
Sbjct: 383 LDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVV 442
Query: 342 KLKENAKLNADDIRTFCKGKVSKF 365
L A L + + C+ +++ F
Sbjct: 443 VLNPGATLTLEALDRHCRQRLASF 466
Score = 70.3 bits (172), Expect = 3e-13
Identities = 34/89 (38%), Positives = 46/89 (51%)
Query: 42 FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
F S D L E+G+ + R KDMII GGENI E+E I P V EA GV D+R
Sbjct: 375 FRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRW 434
Query: 102 GEEVGISIKLKENAKLNADDIRTFCKGKV 130
GE + + L A L + + C+ ++
Sbjct: 435 GERITAVVVLNPGATLTLEALDRHCRQRL 463
>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed.
Length = 547
Score = 71.7 bits (176), Expect = 1e-13
Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 42 FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
+ S D + E GY ++ GR KD+I+RGGENI +E+E+ + HP + +A +PDER+
Sbjct: 412 YYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERL 471
Query: 102 GEEVGISIKLKENA---KLNADDIRTFCKGKV-KRK 133
GE + LK L + + F + +V K K
Sbjct: 472 GERSCAYVVLKAPHHSLTL-EEVVAFFSRKRVAKYK 506
Score = 70.9 bits (174), Expect = 2e-13
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
E GY ++ GR KD+I+RGGENI +E+E+ + HP + +A +PDER+GE + L
Sbjct: 422 EAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVL 481
Query: 344 KENA---KLNADDIRTFCKGKVSK 364
K L + + F + +V+K
Sbjct: 482 KAPHHSLTL-EEVVAFFSRKRVAK 504
>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase.
Length = 567
Score = 71.8 bits (176), Expect = 1e-13
Identities = 39/94 (41%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Query: 42 FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
F S D V DGY ++ R KD+II GGENI E+E + THP VLEA PDER
Sbjct: 432 FHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVVARPDERW 491
Query: 102 GEEVGISIKLKENAKLN-----ADDIRTFCKGKV 130
GE + LK + A+DI FC+ ++
Sbjct: 492 GESPCAFVTLKPGVDKSDEAALAEDIMKFCRERL 525
Score = 69.5 bits (170), Expect = 5e-13
Identities = 35/83 (42%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 285 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 344
DGY ++ R KD+II GGENI E+E + THP VLEA PDER GE + LK
Sbjct: 443 DGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTLK 502
Query: 345 ENAKLN-----ADDIRTFCKGKV 362
+ A+DI FC+ ++
Sbjct: 503 PGVDKSDEAALAEDIMKFCRERL 525
>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional.
Length = 536
Score = 71.6 bits (176), Expect = 1e-13
Identities = 29/62 (46%), Positives = 35/62 (56%)
Query: 42 FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
+ S D + DGY VVGR KD I RGGE I +EIE + HP V+ A + DE M
Sbjct: 411 YCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELM 470
Query: 102 GE 103
GE
Sbjct: 471 GE 472
Score = 69.6 bits (171), Expect = 5e-13
Identities = 27/55 (49%), Positives = 32/55 (58%)
Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 335
+ DGY VVGR KD I RGGE I +EIE + HP V+ A + DE MGE
Sbjct: 418 SIDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGE 472
>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme.
Length = 412
Score = 71.2 bits (175), Expect = 1e-13
Identities = 20/54 (37%), Positives = 27/54 (50%)
Query: 40 FPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYA 93
+ + D EDGY +++GR D + GE I P EIE + HP V EA
Sbjct: 359 GMYRTGDLGRWDEDGYLEILGRKDDQVKIRGERIEPGEIEAVLLEHPGVAEAAV 412
Score = 68.9 bits (169), Expect = 6e-13
Identities = 19/45 (42%), Positives = 24/45 (53%)
Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYA 325
EDGY +++GR D + GE I P EIE + HP V EA
Sbjct: 368 RWDEDGYLEILGRKDDQVKIRGERIEPGEIEAVLLEHPGVAEAAV 412
>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated.
Length = 533
Score = 71.1 bits (175), Expect = 2e-13
Identities = 30/84 (35%), Positives = 53/84 (63%)
Query: 282 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341
+ DG ++GR I GGE ++P+E+EE ++ HP+V +A GVPDER G+EV +
Sbjct: 418 VEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVV 477
Query: 342 KLKENAKLNADDIRTFCKGKVSKF 365
+L+E A+ + ++R C+ ++ +
Sbjct: 478 QLREGARPDLAELRAHCRSSLAGY 501
Score = 70.3 bits (173), Expect = 3e-13
Identities = 34/90 (37%), Positives = 54/90 (60%), Gaps = 5/90 (5%)
Query: 50 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 109
+ DG ++GR I GGE ++P+E+EE ++ HP+V +A GVPDER G+EV +
Sbjct: 418 VEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVV 477
Query: 110 KLKENAKLNADDIRTFCKG-----KVKRKI 134
+L+E A+ + ++R C+ KV R I
Sbjct: 478 QLREGARPDLAELRAHCRSSLAGYKVPRAI 507
>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase.
The members of this family are putative long-chain fatty
acyl-CoA synthetases, which catalyze the ATP-dependent
activation of fatty acids in a two-step reaction. The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. Fatty acyl-CoA synthetases
are responsible for fatty acid degradation as well as
physiological regulation of cellular functions via the
production of fatty acyl-CoA esters.
Length = 430
Score = 69.7 bits (171), Expect = 4e-13
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
E+GY + R+K MI G ++P E+E + HP VLE G PD R GE V + L
Sbjct: 322 EEGYFFFLDRVKRMINVSGYKVWPAEVEALLYQHPAVLEVCVIGRPDPRRGEVVKAFVVL 381
Query: 344 KENA--KLNADDIRTFCKGKVSKF 365
K + K+ +DI +C+ +++ +
Sbjct: 382 KPDYRGKVTEEDIIEWCRERMAAY 405
Score = 68.9 bits (169), Expect = 7e-13
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 52 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
E+GY + R+K MI G ++P E+E + HP VLE G PD R GE V + L
Sbjct: 322 EEGYFFFLDRVKRMINVSGYKVWPAEVEALLYQHPAVLEVCVIGRPDPRRGEVVKAFVVL 381
Query: 112 KENA--KLNADDIRTFCKG 128
K + K+ +DI +C+
Sbjct: 382 KPDYRGKVTEEDIIEWCRE 400
>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. Fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified in
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes an uncharacterized
subgroup of FACS.
Length = 509
Score = 67.8 bits (165), Expect = 2e-12
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 42 FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
F + D V E+GY ++ R+KD+I GGE I ++E + HP V EA +P +
Sbjct: 391 FRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKW 450
Query: 102 GEEVGISIKLKENAKLNADDIRTFCKGKV 130
E + + K +++
Sbjct: 451 QERPLAVVVPRG-EKPTPEELNEHLLKAG 478
Score = 62.4 bits (151), Expect = 1e-10
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
V E+GY ++ R+KD+I GGE I ++E + HP V EA +P + E
Sbjct: 398 VWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAV 457
Query: 341 IKLKENAKLNADDIRTFCKGKV 362
+ + K +++
Sbjct: 458 VVPRG-EKPTPEELNEHLLKAG 478
>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase.
Length = 563
Score = 66.7 bits (163), Expect = 5e-12
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 53 DGYGQV--VGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIK 110
D G + +GR D I GGEN+YP+E+E + HP V GVPD R+ E V ++
Sbjct: 425 DKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVR 484
Query: 111 LKEN 114
L++
Sbjct: 485 LRDG 488
Score = 66.7 bits (163), Expect = 5e-12
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 285 DGYGQV--VGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIK 342
D G + +GR D I GGEN+YP+E+E + HP V GVPD R+ E V ++
Sbjct: 425 DKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVR 484
Query: 343 LKEN 346
L++
Sbjct: 485 LRDG 488
>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed.
Length = 547
Score = 66.6 bits (163), Expect = 5e-12
Identities = 29/77 (37%), Positives = 43/77 (55%)
Query: 53 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 112
DGY ++ GR KD+IIRGGENI EIE + HP + + PDER+GE + +
Sbjct: 432 DGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPR 491
Query: 113 ENAKLNADDIRTFCKGK 129
L+ +++ F K +
Sbjct: 492 PGQSLDFEEMVEFLKAQ 508
Score = 66.6 bits (163), Expect = 5e-12
Identities = 29/77 (37%), Positives = 43/77 (55%)
Query: 285 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 344
DGY ++ GR KD+IIRGGENI EIE + HP + + PDER+GE + +
Sbjct: 432 DGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPR 491
Query: 345 ENAKLNADDIRTFCKGK 361
L+ +++ F K +
Sbjct: 492 PGQSLDFEEMVEFLKAQ 508
>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase.
Members of this protein family are
cyclohexanecarboxylate-CoA ligase. This enzyme prepares
the aliphatic ring compound, cyclohexanecarboxylate, for
dehydrogenation and then degradation by a pathway also
used in benzoyl-CoA degradation in Rhodopseudomonas
palustris.
Length = 538
Score = 65.7 bits (160), Expect = 9e-12
Identities = 30/77 (38%), Positives = 41/77 (53%)
Query: 53 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 112
+GY ++ GR KD+IIRGGENI EIE + HP V + PDER+GE + K
Sbjct: 430 EGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPK 489
Query: 113 ENAKLNADDIRTFCKGK 129
L+ + F K +
Sbjct: 490 PGCTLDFAAMVAFLKAQ 506
Score = 65.7 bits (160), Expect = 9e-12
Identities = 30/77 (38%), Positives = 41/77 (53%)
Query: 285 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 344
+GY ++ GR KD+IIRGGENI EIE + HP V + PDER+GE + K
Sbjct: 430 EGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPK 489
Query: 345 ENAKLNADDIRTFCKGK 361
L+ + F K +
Sbjct: 490 PGCTLDFAAMVAFLKAQ 506
>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 542
Score = 65.5 bits (160), Expect = 1e-11
Identities = 34/82 (41%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 44 SRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 103
S D DGY V GR+KD I RGGE I +E+E + HP V +A +PDE +GE
Sbjct: 418 SGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGE 477
Query: 104 EVGISIKLKENAKLNADDIRTF 125
+ I +KE L A +R F
Sbjct: 478 KSCAFIVVKE-PPLRAAQLRRF 498
Score = 65.1 bits (159), Expect = 1e-11
Identities = 32/76 (42%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 282 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341
DGY V GR+KD I RGGE I +E+E + HP V +A +PDE +GE+ I
Sbjct: 424 RDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFI 483
Query: 342 KLKENAKLNADDIRTF 357
+KE L A +R F
Sbjct: 484 VVKE-PPLRAAQLRRF 498
>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional.
Length = 501
Score = 65.4 bits (159), Expect = 1e-11
Identities = 37/95 (38%), Positives = 49/95 (51%), Gaps = 9/95 (9%)
Query: 260 LPAR-VKAPDRKKCSQRPRYQF--------VLREDGYGQVVGRIKDMIIRGGENIYPKEI 310
LP R + P++ +Q P + F + EDGY + R MII GG NIYP+E
Sbjct: 358 LPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQET 417
Query: 311 EEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE 345
E + HP V + GVPD MGE+V I+L E
Sbjct: 418 ENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVE 452
Score = 61.2 bits (148), Expect = 3e-10
Identities = 30/62 (48%), Positives = 36/62 (58%)
Query: 52 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
EDGY + R MII GG NIYP+E E + HP V + GVPD MGE+V I+L
Sbjct: 391 EDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQL 450
Query: 112 KE 113
E
Sbjct: 451 VE 452
>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase;
Validated.
Length = 517
Score = 63.5 bits (155), Expect = 5e-11
Identities = 27/82 (32%), Positives = 43/82 (52%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
E+G+ V R +MI RGGEN+ E+E I THP + + G+ D E + + L
Sbjct: 410 EEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVL 469
Query: 344 KENAKLNADDIRTFCKGKVSKF 365
E L+ ++ FC+ ++KF
Sbjct: 470 NEGETLSEEEFFAFCEQNMAKF 491
Score = 58.9 bits (143), Expect = 1e-09
Identities = 25/75 (33%), Positives = 38/75 (50%)
Query: 52 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
E+G+ V R +MI RGGEN+ E+E I THP + + G+ D E + + L
Sbjct: 410 EEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVL 469
Query: 112 KENAKLNADDIRTFC 126
E L+ ++ FC
Sbjct: 470 NEGETLSEEEFFAFC 484
>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 439
Score = 63.1 bits (154), Expect = 5e-11
Identities = 35/93 (37%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 42 FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
L+ D DGY GR D+I G I P EIEE + HP VLEA GVPD
Sbjct: 318 LLTGDLGRRDADGYLWFKGRADDVIKSSGYRIGPAEIEECLLKHPAVLEAAVVGVPDPER 377
Query: 102 GEEVGISIKLKENAKLNADDIRTFCKGKVKRKI 134
GE V + L E +D++ T + VK ++
Sbjct: 378 GEIVKAFVVLAEGV-EPSDELATELQELVKSRL 409
Score = 62.0 bits (151), Expect = 1e-10
Identities = 29/62 (46%), Positives = 32/62 (51%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
DGY GR D+I G I P EIEE + HP VLEA GVPD GE V + L
Sbjct: 328 ADGYLWFKGRADDVIKSSGYRIGPAEIEECLLKHPAVLEAAVVGVPDPERGEIVKAFVVL 387
Query: 344 KE 345
E
Sbjct: 388 AE 389
>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated.
Length = 546
Score = 63.1 bits (154), Expect = 7e-11
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 52 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
E+GY + R+K MI G ++P E+E + HP + EA PD R GE V + L
Sbjct: 428 EEGYFFITDRLKRMINASGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVL 487
Query: 112 KENA--KLNADDIRTFCKG 128
+ A K ++I + +
Sbjct: 488 RPEARGKTTEEEIIAWARE 506
Score = 63.1 bits (154), Expect = 7e-11
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
E+GY + R+K MI G ++P E+E + HP + EA PD R GE V + L
Sbjct: 428 EEGYFFITDRLKRMINASGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVL 487
Query: 344 KENA--KLNADDIRTFCKG 360
+ A K ++I + +
Sbjct: 488 RPEARGKTTEEEIIAWARE 506
>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated.
Length = 563
Score = 63.1 bits (153), Expect = 8e-11
Identities = 30/84 (35%), Positives = 47/84 (55%)
Query: 282 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341
+ EDG+ V R KDMI+ G N+YP+E+EE + H V E GVPD GE V +
Sbjct: 441 MDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFV 500
Query: 342 KLKENAKLNADDIRTFCKGKVSKF 365
LKE + + +++ F + ++ +
Sbjct: 501 VLKEGTECSEEELNQFARKYLAAY 524
Score = 62.7 bits (152), Expect = 9e-11
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 50 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 109
+ EDG+ V R KDMI+ G N+YP+E+EE + H V E GVPD GE V +
Sbjct: 441 MDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFV 500
Query: 110 KLKENAKLNADDIRTFCK 127
LKE + + +++ F +
Sbjct: 501 VLKEGTECSEEELNQFAR 518
>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase. Proteins
in this family belong to the AMP-binding enzyme family
(pfam00501). Members activate 2,3-dihydroxybenzoate
(DHB) by ligation of AMP from ATP with the release of
pyrophosphate; many are involved in synthesis of
siderophores such as enterobactin, vibriobactin,
vulnibactin, etc. The most closely related proteine
believed to differ in function activates salicylate
rather than DHB [Transport and binding proteins, Cations
and iron carrying compounds].
Length = 526
Score = 62.1 bits (151), Expect = 1e-10
Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 7/102 (6%)
Query: 42 FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
+ + D L +GY VVGR KD I RGGE I +EIE + HP V +A +PDE +
Sbjct: 409 YYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDELL 468
Query: 102 GEEVGISIKLKENAKLNADDIRTFCKG------KVKRKISCI 137
GE+ I +++ A L A +R F + K+ ++ +
Sbjct: 469 GEKSCAFIVVRDPA-LKAAQLRRFLRERGLAEYKLPDRVEFV 509
Score = 61.0 bits (148), Expect = 4e-10
Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 282 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341
L +GY VVGR KD I RGGE I +EIE + HP V +A +PDE +GE+ I
Sbjct: 417 LTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFI 476
Query: 342 KLKENAKLNADDIRTFCKG 360
+++ A L A +R F +
Sbjct: 477 VVRDPA-LKAAQLRRFLRE 494
>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL). ABCL catalyzes
the initial step in the 2-aminobenzoate aerobic
degradation pathway by activating 2-aminobenzoate to
2-aminobenzoyl-CoA. The reaction is carried out via a
two-step process; the first step is ATP-dependent and
forms a 2-aminobenzoyl-AMP intermediate, and the second
step forms the 2-aminobenzoyl-CoA ester and releases the
AMP. 2-Aminobenzoyl-CoA is further converted to
2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by
2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has
been purified from cells aerobically grown with
2-aminobenzoate as sole carbon, energy, and nitrogen
source, and has been characterized as a monomer.
Length = 487
Score = 61.0 bits (148), Expect = 3e-10
Identities = 35/85 (41%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 46 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 105
D F EDGY V R DMI+ G NI E+E+ + THP+V E GVPDE G+ V
Sbjct: 371 DIFRQDEDGYFHYVARSDDMIVSAGYNIAAPEVEDALLTHPDVAECAVIGVPDEERGQIV 430
Query: 106 GISIKLKENAK---LNADDIRTFCK 127
I L++ K L A+ ++ F K
Sbjct: 431 CAHIVLRDGTKATELLAERLQDFVK 455
Score = 59.0 bits (143), Expect = 1e-09
Identities = 34/83 (40%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 280 FVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGI 339
F EDGY V R DMI+ G NI E+E+ + THP+V E GVPDE G+ V
Sbjct: 373 FRQDEDGYFHYVARSDDMIVSAGYNIAAPEVEDALLTHPDVAECAVIGVPDEERGQIVCA 432
Query: 340 SIKLKENAK---LNADDIRTFCK 359
I L++ K L A+ ++ F K
Sbjct: 433 HIVLRDGTKATELLAERLQDFVK 455
>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed.
Length = 452
Score = 59.6 bits (145), Expect = 8e-10
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 282 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341
L GY ++GR II GGEN+YP E+E I V + G+PD GE V +I
Sbjct: 334 LDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVV-TAI 392
Query: 342 KLKENAKLNADDIRTFCKGKVSKF 365
+ ++ ++ ++++T K ++S F
Sbjct: 393 YVPKDPSISLEELKTAIKDQLSPF 416
Score = 56.9 bits (138), Expect = 6e-09
Identities = 23/56 (41%), Positives = 29/56 (51%)
Query: 50 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 105
L GY ++GR II GGEN+YP E+E I V + G+PD GE V
Sbjct: 334 LDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVV 389
>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
[Lipid metabolism].
Length = 528
Score = 59.6 bits (145), Expect = 1e-09
Identities = 35/100 (35%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 42 FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
+ + D EDGY + GR D+I G+ I P EIE + HP V EA GVPD
Sbjct: 398 YRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGK 457
Query: 102 GEEVGISIKLKENAKLN--ADDIRTFCKGKVKRKISCIFI 139
G+ V + L + N A++IR V R I I
Sbjct: 458 GQIVLAFVVLAAGVEPNELAEEIRRH----VARNIGPHAI 493
Score = 58.5 bits (142), Expect = 2e-09
Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 280 FVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGI 339
EDGY + GR D+I G+ I P EIE + HP V EA GVPD G+ V
Sbjct: 404 AERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLA 463
Query: 340 SIKLKENAKLN--ADDIRTFCKGKVSKF 365
+ L + N A++IR +
Sbjct: 464 FVVLAAGVEPNELAEEIRRHVARNIGPH 491
>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 440
Score = 57.8 bits (140), Expect = 3e-09
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
EDGY +GR D+II G I P ++E + HP V EA GVPD GE V + L
Sbjct: 329 EDGYFWFIGRADDVIISAGYRIGPFDVESALLEHPAVAEAAVVGVPDPLRGEIVKAFVVL 388
Query: 344 KENAKLN---ADDIRTFCKGKVSK 364
KE + A++++ F K ++S
Sbjct: 389 KEGYAGSDELAEELQLFVKKRLSA 412
Score = 57.5 bits (139), Expect = 4e-09
Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 7/97 (7%)
Query: 42 FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
+++ D EDGY +GR D+II G I P ++E + HP V EA GVPD
Sbjct: 319 YVTGDLVERDEDGYFWFIGRADDVIISAGYRIGPFDVESALLEHPAVAEAAVVGVPDPLR 378
Query: 102 GEEVGISIKLKENAKLN---ADDIRTFCKGKVKRKIS 135
GE V + LKE + A++++ F VK+++S
Sbjct: 379 GEIVKAFVVLKEGYAGSDELAEELQLF----VKKRLS 411
>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional.
Length = 542
Score = 57.5 bits (139), Expect = 4e-09
Identities = 25/82 (30%), Positives = 40/82 (48%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
GY ++ R KD+I GGE I ++E HP V EA GV + E + ++L
Sbjct: 422 AYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQL 481
Query: 344 KENAKLNADDIRTFCKGKVSKF 365
K ++I + GK++K+
Sbjct: 482 KPGETATREEILKYMDGKIAKW 503
Score = 54.8 bits (132), Expect = 3e-08
Identities = 24/79 (30%), Positives = 37/79 (46%)
Query: 52 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
GY ++ R KD+I GGE I ++E HP V EA GV + E + ++L
Sbjct: 422 AYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQL 481
Query: 112 KENAKLNADDIRTFCKGKV 130
K ++I + GK+
Sbjct: 482 KPGETATREEILKYMDGKI 500
>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated.
Length = 540
Score = 57.3 bits (138), Expect = 5e-09
Identities = 25/59 (42%), Positives = 35/59 (59%)
Query: 51 REDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 109
REDG+ + GR +MII GG NI P E++ + V EA Y +PDE G VG+++
Sbjct: 413 REDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAV 471
Score = 57.3 bits (138), Expect = 5e-09
Identities = 25/59 (42%), Positives = 35/59 (59%)
Query: 283 REDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341
REDG+ + GR +MII GG NI P E++ + V EA Y +PDE G VG+++
Sbjct: 413 REDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAV 471
>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and
4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase).
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A
ligase catalyze the first activating step for benzoate
and 4-hydroxybenzoate catabolic pathways, respectively.
Although these two enzymes share very high sequence
homology, they have their own substrate preference. The
reaction proceeds via a two-step process; the first
ATP-dependent step forms the substrate-AMP intermediate,
while the second step forms the acyl-CoA ester,
releasing the AMP. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Some bacteria can use benzoic acid
or benzenoid compounds as the sole source of carbon and
energy through degradation. Benzoate CoA ligase and
4-hydroxybenzoate-Coenzyme A ligase are key enzymes of
this process.
Length = 506
Score = 56.2 bits (136), Expect = 1e-08
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 46 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 105
D++ EDGY GR DM+ G + P E+E+ + HP VLEA G DE +
Sbjct: 390 DKYYRDEDGYYWYCGRSDDMLKVSGIWVSPFEVEDALLQHPAVLEAAVVGAEDEDGLTKP 449
Query: 106 GISIKLKENAKLN---ADDIRTFCKGK 129
+ LK+ + + +++ F K K
Sbjct: 450 KAFVVLKDGYQPSPELETELKDFVKDK 476
Score = 54.6 bits (132), Expect = 3e-08
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 280 FVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGI 339
+ EDGY GR DM+ G + P E+E+ + HP VLEA G DE +
Sbjct: 392 YYRDEDGYYWYCGRSDDMLKVSGIWVSPFEVEDALLQHPAVLEAAVVGAEDEDGLTKPKA 451
Query: 340 SIKLKENAKLN---ADDIRTFCKGKVSKF 365
+ LK+ + + +++ F K K++ +
Sbjct: 452 FVVLKDGYQPSPELETELKDFVKDKLAPY 480
>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or
ACSM). MACS catalyzes the two-step activation of medium
chain fatty acids (containing 4-12 carbons). The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes.
Length = 430
Score = 55.8 bits (135), Expect = 1e-08
Identities = 27/64 (42%), Positives = 34/64 (53%)
Query: 42 FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
+L+ D+ + EDGY VGR D+I G I P E+E + HP V EA G PD
Sbjct: 309 YLTGDRAIKDEDGYFWFVGRADDVIKSSGYRIGPFEVESALIEHPAVAEAAVVGSPDPVR 368
Query: 102 GEEV 105
GE V
Sbjct: 369 GEVV 372
Score = 55.0 bits (133), Expect = 2e-08
Identities = 25/54 (46%), Positives = 28/54 (51%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 337
EDGY VGR D+I G I P E+E + HP V EA G PD GE V
Sbjct: 319 EDGYFWFVGRADDVIKSSGYRIGPFEVESALIEHPAVAEAAVVGSPDPVRGEVV 372
>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate
forming enzymes. This family contains benzoate CoA
ligase (BCL) and related ligases that catalyze the
acylation of benzoate derivatives, 2-aminobenzoate and
4-hydroxybenzoate. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Xenobiotic aromatic compounds are
also a major class of man-made pollutants. Some bacteria
use benzoate as the sole source of carbon and energy
through benzoate degradation. Benzoate degradation
starts with its activation to benzoyl-CoA by benzoate
CoA ligase. The reaction catalyzed by benzoate CoA
ligase proceeds via a two-step process; the first
ATP-dependent step forms an acyl-AMP intermediate, and
the second step forms the acyl-CoA ester with release of
the AMP.
Length = 436
Score = 55.8 bits (135), Expect = 1e-08
Identities = 22/57 (38%), Positives = 30/57 (52%)
Query: 44 SRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDER 100
+ D+F DG+ + GR DMI G+ + P E+E + HP V EA VPDE
Sbjct: 318 TGDRFSRDADGWYRYQGRADDMIKVSGQWVSPLEVEAALGEHPAVAEAAVVAVPDED 374
Score = 54.3 bits (131), Expect = 4e-08
Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 17/101 (16%)
Query: 275 RPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMG 334
R +F DG+ + GR DMI G+ + P E+E + HP V EA VPDE
Sbjct: 317 RTGDRFSRDADGWYRYQGRADDMIKVSGQWVSPLEVEAALGEHPAVAEAAVVAVPDEDGL 376
Query: 335 ----------EEVGISIKLKENAKLNADDIRTFCKGKVSKF 365
I L D+ F + +++ +
Sbjct: 377 VRLKAFVVPRPGEAIQQLL-------ERDLHRFLRERLAPY 410
>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated.
Length = 567
Score = 55.8 bits (135), Expect = 1e-08
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 52 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
E G+ +GR K+M+ G +++P E+E + HP VL + G PD G+ ++L
Sbjct: 454 EQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQL 513
Query: 112 KENAKLNADDIRTFCK 127
K A L A ++ +C+
Sbjct: 514 KPGADLTAAALQAWCR 529
Score = 55.8 bits (135), Expect = 1e-08
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
E G+ +GR K+M+ G +++P E+E + HP VL + G PD G+ ++L
Sbjct: 454 EQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQL 513
Query: 344 KENAKLNADDIRTFCK 359
K A L A ++ +C+
Sbjct: 514 KPGADLTAAALQAWCR 529
>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated.
Length = 529
Score = 55.5 bits (134), Expect = 2e-08
Identities = 24/74 (32%), Positives = 36/74 (48%)
Query: 52 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
DGY GR+ D + GEN+ IE + +P+ E Y VPD +G++V ++ L
Sbjct: 393 ADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVL 452
Query: 112 KENAKLNADDIRTF 125
AK + D F
Sbjct: 453 APGAKFDPDAFAEF 466
Score = 55.5 bits (134), Expect = 2e-08
Identities = 24/74 (32%), Positives = 36/74 (48%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
DGY GR+ D + GEN+ IE + +P+ E Y VPD +G++V ++ L
Sbjct: 393 ADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVL 452
Query: 344 KENAKLNADDIRTF 357
AK + D F
Sbjct: 453 APGAKFDPDAFAEF 466
>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 458
Score = 55.3 bits (134), Expect = 2e-08
Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 290 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE-VGISIKLKENAK 348
++GR+ ++ GGE I P+EIE I HP V + + V D G+ V + ++ +++
Sbjct: 349 ILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAV---VESDSE 405
Query: 349 LNADDIRTFCKGKVSKF 365
++ + + K+++F
Sbjct: 406 AAVVNLAEWLQDKLARF 422
Score = 53.3 bits (129), Expect = 8e-08
Identities = 23/99 (23%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 42 FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
F +RD+ + +G ++GR+ ++ GGE I P+EIE I HP V + + V D
Sbjct: 334 FATRDRGEWQ-NGELTILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEF 392
Query: 102 GEE-VGISIKLKENAKLNADDIRTFCKGKV---KRKISC 136
G+ V + ++ +++ ++ + + K+ ++ ++
Sbjct: 393 GQRPVAV---VESDSEAAVVNLAEWLQDKLARFQQPVAY 428
>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE). PrpE catalyzes the
first step of the 2-methylcitric acid cycle for
propionate catabolism. It activates propionate to
propionyl-CoA in a two-step reaction, which proceeds
through a propionyl-AMP intermediate and requires ATP
and Mg2+. In Salmonella enterica, the PrpE protein is
required for growth of S. enterica on propionate and can
substitute for the acetyl-CoA synthetase (Acs) enzyme
during growth on acetate. PrpE can also activate
acetate, 3HP, and butyrate to their corresponding
CoA-thioesters, although with less efficiency.
Length = 607
Score = 54.6 bits (132), Expect = 4e-08
Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 2/106 (1%)
Query: 31 LFVELCLLLFP--FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNV 88
F +L L FP + + D EDGY V+GR D+I G + E+EE + HP+V
Sbjct: 450 RFKKLYLNKFPGYYDTGDSGYKDEDGYLFVMGRTDDVINVAGHRLSTGEMEESVLKHPDV 509
Query: 89 LEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKI 134
E GV DE G+ + LK++ K++AD + V+ +I
Sbjct: 510 AECAVVGVRDELKGQVPLGLVVLKDDCKIDADQLENEIVALVREQI 555
Score = 52.7 bits (127), Expect = 2e-07
Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
EDGY V+GR D+I G + E+EE + HP+V E GV DE G+ + L
Sbjct: 473 EDGYLFVMGRTDDVINVAGHRLSTGEMEESVLKHPDVAECAVVGVRDELKGQVPLGLVVL 532
Query: 344 KENAKLNADDIRT 356
K++ K++AD +
Sbjct: 533 KDDCKIDADQLEN 545
>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS)
of AAE_MA like. MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. This family of MACS
enzymes is found in archaea and bacteria. It is
represented by the acyl-adenylating enzyme from
Methanosarcina acetivorans (AAE_MA). AAE_MA is most
active with propionate, butyrate, and the branched
analogs: 2-methyl-propionate, butyrate, and pentanoate.
The specific activity is weaker for smaller or larger
acids.
Length = 537
Score = 54.4 bits (131), Expect = 5e-08
Identities = 27/63 (42%), Positives = 33/63 (52%)
Query: 52 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
EDGY VGR D+I G I P E+E + HP VLE GVPD G+ V +I L
Sbjct: 424 EDGYLWFVGRADDLIKSSGYRIGPFEVESALIQHPAVLECAVTGVPDPIRGQVVKATIVL 483
Query: 112 KEN 114
+
Sbjct: 484 TKG 486
Score = 54.4 bits (131), Expect = 5e-08
Identities = 27/63 (42%), Positives = 33/63 (52%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
EDGY VGR D+I G I P E+E + HP VLE GVPD G+ V +I L
Sbjct: 424 EDGYLWFVGRADDLIKSSGYRIGPFEVESALIQHPAVLECAVTGVPDPIRGQVVKATIVL 483
Query: 344 KEN 346
+
Sbjct: 484 TKG 486
>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual
roles as fatty acid transporters and its activation
enzymes. Fatty acid transport protein (FATP) transports
long-chain or very-long-chain fatty acids across the
plasma membrane. FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. At least
five copies of FATPs are identified in mammalian cells.
This family also includes prokaryotic FATPs. FATPs are
the key players in the trafficking of exogenous fatty
acids into the cell and in intracellular fatty acid
homeostasis.
Length = 444
Score = 53.4 bits (129), Expect = 7e-08
Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Query: 42 FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
F + D GY V R+ D GEN+ E+EE + HP V EA YGV
Sbjct: 320 FNTGDLVRRDGFGYFYFVDRLGDTFRWKGENVSTTEVEEVLAKHPGVEEANVYGVEVPGT 379
Query: 102 -GEEVGISIKLKENAKLNAD 120
G ++ L A +
Sbjct: 380 EGRAGMAALTLAPGAAFDPQ 399
Score = 51.1 bits (123), Expect = 4e-07
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM-GEEVGISIK 342
GY V R+ D GEN+ E+EE + HP V EA YGV G ++
Sbjct: 330 GFGYFYFVDRLGDTFRWKGENVSTTEVEEVLAKHPGVEEANVYGVEVPGTEGRAGMAALT 389
Query: 343 LKENAKLNAD 352
L A +
Sbjct: 390 LAPGAAFDPQ 399
>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 358
Score = 52.7 bits (127), Expect = 1e-07
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 53 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 105
DG V+GR D I GG + P+ +E + THP V + +G+PD+R+G+ V
Sbjct: 246 DGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRV 298
Score = 52.7 bits (127), Expect = 1e-07
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 285 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 337
DG V+GR D I GG + P+ +E + THP V + +G+PD+R+G+ V
Sbjct: 246 DGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRV 298
>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA
synthetase like family (ACS). This family is most
similar to acetyl-CoA synthetase. Acetyl-CoA synthetase
(ACS) catalyzes the formation of acetyl-CoA from
acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is only present in bacteria.
Length = 443
Score = 52.8 bits (127), Expect = 1e-07
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
EDGY VGR D+I G + P E+E + HP V EA G PD GE V + L
Sbjct: 332 EDGYFWFVGRADDVIKTAGHLVGPFEVESALMEHPAVAEAGVIGKPDPVAGEIVKAFVSL 391
Query: 344 KENAKLNAD---DIRTFCKGKVS 363
+ + + + ++ TF + ++
Sbjct: 392 RPGFEPSEELRRELLTFARQRLG 414
Score = 52.4 bits (126), Expect = 2e-07
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 52 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
EDGY VGR D+I G + P E+E + HP V EA G PD GE V + L
Sbjct: 332 EDGYFWFVGRADDVIKTAGHLVGPFEVESALMEHPAVAEAGVIGKPDPVAGEIVKAFVSL 391
Query: 112 KENAKLNAD---DIRTFCKGK 129
+ + + + ++ TF + +
Sbjct: 392 RPGFEPSEELRRELLTFARQR 412
>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL). FAAL belongs to the
class I adenylate forming enzyme family and is
homologous to fatty acyl-coenzyme A (CoA) ligases
(FACLs). However, FAALs produce only the acyl adenylate
and are unable to perform the thioester-forming
reaction, while FACLs perform a two-step catalytic
reaction; AMP ligation followed by CoA ligation using
ATP and CoA as cofactors. FAALs have insertion motifs
between the N-terminal and C-terminal subdomains that
distinguish them from the FACLs. This insertion motif
precludes the binding of CoA, thus preventing CoA
ligation. It has been suggested that the acyl adenylates
serve as substrates for multifunctional polyketide
synthases to permit synthesis of complex lipids such as
phthiocerol dimycocerosate, sulfolipids, mycolic acids,
and mycobactin.
Length = 547
Score = 53.0 bits (128), Expect = 1e-07
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 12/69 (17%)
Query: 42 FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLE---AYAYGVPD 98
FL + V GR+KD+II G N YP++IE ++ L A A+ V
Sbjct: 426 FLHDGELY--------VTGRLKDLIIIRGRNHYPQDIEATVERAHPALRPGAAAAFSVDG 477
Query: 99 ERMGEEVGI 107
+ E + +
Sbjct: 478 DG-EERLVV 485
Score = 53.0 bits (128), Expect = 1e-07
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 290 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLE---AYAYGVPDERMGEEVGI 339
V GR+KD+II G N YP++IE ++ L A A+ V + E + +
Sbjct: 434 VTGRLKDLIIIRGRNHYPQDIEATVERAHPALRPGAAAAFSVDGDG-EERLVV 485
>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional.
Length = 540
Score = 52.7 bits (127), Expect = 2e-07
Identities = 26/82 (31%), Positives = 39/82 (47%)
Query: 44 SRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 103
S D DG+ GR D + GEN+ IE + HP + Y VPDER+G+
Sbjct: 384 SGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDERVGD 443
Query: 104 EVGISIKLKENAKLNADDIRTF 125
+V ++ L++ A + D F
Sbjct: 444 QVMAALVLRDGATFDPDAFAAF 465
Score = 52.3 bits (126), Expect = 2e-07
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
DG+ GR D + GEN+ IE + HP + Y VPDER+G++V ++ L
Sbjct: 392 ADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVL 451
Query: 344 KENAKLNADDIRTF 357
++ A + D F
Sbjct: 452 RDGATFDPDAFAAF 465
>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated.
Length = 414
Score = 52.3 bits (126), Expect = 2e-07
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 44 SRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 103
++D E G +GR+ D+I G N+YP E+E+ + P V EA Y D GE
Sbjct: 295 TKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGE 354
Query: 104 EVGISIKLKENAKLNAD--DIRTFC 126
V K K + D +R +C
Sbjct: 355 RV----KAKVISHEEIDPVQLREWC 375
Score = 51.6 bits (124), Expect = 3e-07
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
E G +GR+ D+I G N+YP E+E+ + P V EA Y D GE V K
Sbjct: 303 ERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERV----KA 358
Query: 344 KENAKLNAD--DIRTFC 358
K + D +R +C
Sbjct: 359 KVISHEEIDPVQLREWC 375
>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional.
Length = 579
Score = 52.3 bits (125), Expect = 2e-07
Identities = 25/80 (31%), Positives = 38/80 (47%)
Query: 46 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 105
D V+ DG+ ++ R KD+II GGENI E+E + +P VLE +P GE
Sbjct: 426 DVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETP 485
Query: 106 GISIKLKENAKLNADDIRTF 125
+ L++ D +
Sbjct: 486 CAFVVLEKGETTKEDRVDKL 505
Score = 52.3 bits (125), Expect = 2e-07
Identities = 24/77 (31%), Positives = 37/77 (48%)
Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
V+ DG+ ++ R KD+II GGENI E+E + +P VLE +P GE
Sbjct: 429 VIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAF 488
Query: 341 IKLKENAKLNADDIRTF 357
+ L++ D +
Sbjct: 489 VVLEKGETTKEDRVDKL 505
>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated.
Length = 579
Score = 52.3 bits (126), Expect = 2e-07
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 53 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVL--EAYAYGVPDERMGEEV 105
DGY + GR KD+II G NI+P++IE + P + +A A+ + E GE++
Sbjct: 451 DGYLYITGRAKDLIIINGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQEN-GEKI 504
Score = 52.3 bits (126), Expect = 2e-07
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 285 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVL--EAYAYGVPDERMGEEV 337
DGY + GR KD+II G NI+P++IE + P + +A A+ + E GE++
Sbjct: 451 DGYLYITGRAKDLIIINGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQEN-GEKI 504
>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL). 4-Coumarate:coenzyme A
ligase is a key enzyme in the phenylpropanoid metabolic
pathway for monolignol and flavonoid biosynthesis. It
catalyzes the synthesis of hydroxycinnamate-CoA
thioesters in a two-step reaction, involving the
formation of hydroxycinnamate-AMP anhydride and the
nucleophilic substitution of AMP by CoA. The
phenylpropanoid pathway is one of the most important
secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 504
Score = 52.3 bits (126), Expect = 2e-07
Identities = 24/80 (30%), Positives = 43/80 (53%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
EDGY +V R+K++I G + P E+E + +HP + +A PDE GE +
Sbjct: 398 EDGYLFIVDRLKELIKYKGFQVAPAELEALLLSHPEIADAAVIPYPDEEAGEIPMAFVVR 457
Query: 344 KENAKLNADDIRTFCKGKVS 363
+ ++L+ D++ F +V+
Sbjct: 458 QPGSELSEDEVMQFVAKQVA 477
Score = 51.5 bits (124), Expect = 3e-07
Identities = 24/79 (30%), Positives = 42/79 (53%)
Query: 52 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
EDGY +V R+K++I G + P E+E + +HP + +A PDE GE +
Sbjct: 398 EDGYLFIVDRLKELIKYKGFQVAPAELEALLLSHPEIADAAVIPYPDEEAGEIPMAFVVR 457
Query: 112 KENAKLNADDIRTFCKGKV 130
+ ++L+ D++ F +V
Sbjct: 458 QPGSELSEDEVMQFVAKQV 476
>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and
Bubblegum-like very long-chain fatty acid CoA
synthetases. This family includes long-chain fatty acid
(C12-C20) CoA synthetases and Bubblegum-like very
long-chain (>C20) fatty acid CoA synthetases. FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
Eukaryotes generally have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells. Drosophila melanogaster
mutant bubblegum (BGM) have elevated levels of
very-long-chain fatty acids (VLCFA) caused by a
defective gene later named bubblegum. The human homolog
(hsBG) of bubblegum has been characterized as a very
long chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. Free fatty
acids must be "activated" to their CoA thioesters before
participating in most catabolic and anabolic reactions.
Length = 456
Score = 51.8 bits (125), Expect = 3e-07
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 52 EDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHPNVLEAYAYGVPDER 100
EDG+ + R KD+I+ GG+NI P+ IE ++ P + +A G D+R
Sbjct: 323 EDGFLVITDRKKDLIVTAGGKNIAPQPIENALKASPYISQAVVVG--DDR 370
Score = 51.8 bits (125), Expect = 3e-07
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 284 EDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHPNVLEAYAYGVPDER 332
EDG+ + R KD+I+ GG+NI P+ IE ++ P + +A G D+R
Sbjct: 323 EDGFLVITDRKKDLIVTAGGKNIAPQPIENALKASPYISQAVVVG--DDR 370
>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated.
Length = 539
Score = 51.6 bits (124), Expect = 3e-07
Identities = 25/80 (31%), Positives = 40/80 (50%)
Query: 285 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 344
DG+ Q+ R KD+I GGE I +IE HP V EA + E + + +
Sbjct: 422 DGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKR 481
Query: 345 ENAKLNADDIRTFCKGKVSK 364
A++ +++ F +GKV+K
Sbjct: 482 PGAEVTREELLAFYEGKVAK 501
Score = 49.3 bits (118), Expect = 2e-06
Identities = 24/78 (30%), Positives = 38/78 (48%)
Query: 53 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 112
DG+ Q+ R KD+I GGE I +IE HP V EA + E + + +
Sbjct: 422 DGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKR 481
Query: 113 ENAKLNADDIRTFCKGKV 130
A++ +++ F +GKV
Sbjct: 482 PGAEVTREELLAFYEGKV 499
>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily
similar to Acetoacetyl-CoA synthetase. This
uncharacterized acyl-CoA synthetase family is highly
homologous to acetoacetyl-CoA synthetase. However, the
proteins in this family exist in only bacteria and
archaea. AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms.
Length = 474
Score = 51.1 bits (123), Expect = 5e-07
Identities = 28/73 (38%), Positives = 37/73 (50%)
Query: 52 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
EDGY ++GR D I G+ + P EIE + +HP V EA A GVPD GE + + L
Sbjct: 347 EDGYWYILGRSDDTIKVAGKRVGPAEIESVLNSHPAVAEAAAIGVPDPVKGEAIVCFVVL 406
Query: 112 KENAKLNADDIRT 124
K +A
Sbjct: 407 KPGVTPSAALEAE 419
Score = 51.1 bits (123), Expect = 5e-07
Identities = 28/73 (38%), Positives = 37/73 (50%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
EDGY ++GR D I G+ + P EIE + +HP V EA A GVPD GE + + L
Sbjct: 347 EDGYWYILGRSDDTIKVAGKRVGPAEIESVLNSHPAVAEAAAIGVPDPVKGEAIVCFVVL 406
Query: 344 KENAKLNADDIRT 356
K +A
Sbjct: 407 KPGVTPSAALEAE 419
>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid
metabolism].
Length = 613
Score = 50.8 bits (122), Expect = 6e-07
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 11/81 (13%)
Query: 46 DQFVLREDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHPNVLEAYAYG--------- 95
D L EDGY + GR K++I G+NI P+ IE + P + + G
Sbjct: 455 DLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVGDDKKFLVAL 514
Query: 96 -VPDERMGEEVGISIKLKENA 115
VPD E+ S+ +A
Sbjct: 515 IVPDFDALEKWAESLNKVISA 535
Score = 49.6 bits (119), Expect = 1e-06
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 11/79 (13%)
Query: 280 FVLREDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHPNVLEAYAYG----------V 328
L EDGY + GR K++I G+NI P+ IE + P + + G V
Sbjct: 457 GELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVGDDKKFLVALIV 516
Query: 329 PDERMGEEVGISIKLKENA 347
PD E+ S+ +A
Sbjct: 517 PDFDALEKWAESLNKVISA 535
>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase
A-associated. This group of proteins contains an
AMP-binding domain (pfam00501) associated with acyl
CoA-ligases. These proteins are generally found in
genomes containing the exosortase/PEP-CTERM protein
expoert system , specifically the type 1 variant of this
system described by the Genome Property GenProp0652.
When found in this context they are invariably present
next to a decarboxylase enzyme. A number of sequences
from Burkholderia species also hit this model, but the
genomic context is obviously different. The hypothesis
of a constant substrate for this family is only strong
where the exosortase context is present.
Length = 517
Score = 50.6 bits (121), Expect = 8e-07
Identities = 23/82 (28%), Positives = 41/82 (50%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
E+G+ VGR +MI G + P E+EE V EA A+GVPD +G+ + + +
Sbjct: 408 EEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTP 467
Query: 344 KENAKLNADDIRTFCKGKVSKF 365
+L+ + C+ ++ +
Sbjct: 468 PGGEELDRAALLAECRARLPNY 489
Score = 49.8 bits (119), Expect = 1e-06
Identities = 23/76 (30%), Positives = 38/76 (50%)
Query: 52 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
E+G+ VGR +MI G + P E+EE V EA A+GVPD +G+ + + +
Sbjct: 408 EEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTP 467
Query: 112 KENAKLNADDIRTFCK 127
+L+ + C+
Sbjct: 468 PGGEELDRAALLAECR 483
>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase. This model
describes acetate-CoA ligase (EC 6.2.1.1), also called
acetyl-CoA synthetase and acetyl-activating enzyme. It
catalyzes the reaction ATP + acetate + CoA = AMP +
diphosphate + acetyl-CoA and belongs to the family of
AMP-binding enzymes described by pfam00501.
Length = 625
Score = 50.3 bits (121), Expect = 9e-07
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 52 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
+DGY + GR+ D+I G + EIE + +HP V EA G+PD+ G+ + + L
Sbjct: 487 KDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTL 546
Query: 112 KENAKLNADDIRTFCKGKVKRKISCI 137
K+ + + D++R + V+++I I
Sbjct: 547 KDGYEPD-DELRKELRKHVRKEIGPI 571
Score = 48.8 bits (117), Expect = 3e-06
Identities = 22/69 (31%), Positives = 38/69 (55%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
+DGY + GR+ D+I G + EIE + +HP V EA G+PD+ G+ + + L
Sbjct: 487 KDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTL 546
Query: 344 KENAKLNAD 352
K+ + + +
Sbjct: 547 KDGYEPDDE 555
>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase
(MACS or ACSM). MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes. MACS enzymes are localized to
mitochondria. Two murine MACS family proteins are found
in liver and kidney. In rodents, a MACS member is
detected particularly in the olfactory epithelium and is
called O-MACS. O-MACS demonstrates substrate preference
for the fatty acid lengths of C6-C12.
Length = 530
Score = 50.2 bits (120), Expect = 9e-07
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 42 FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
+++ D+ ++ EDGY VGR D+I G I P E+E + HP V+E+ PD
Sbjct: 404 YITGDRGIMDEDGYFWFVGRADDVINSSGYRIGPFEVESALIEHPAVVESAVVSSPDPIR 463
Query: 102 GEEV 105
GE V
Sbjct: 464 GEVV 467
Score = 47.9 bits (114), Expect = 5e-06
Identities = 23/57 (40%), Positives = 30/57 (52%)
Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 337
++ EDGY VGR D+I G I P E+E + HP V+E+ PD GE V
Sbjct: 411 IMDEDGYFWFVGRADDVINSSGYRIGPFEVESALIEHPAVVESAVVSSPDPIRGEVV 467
>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA
ligase and acetyl-activating enzyme). Acetyl-CoA
synthetase (ACS) catalyzes the formation of acetyl-CoA
from acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is widely present in all living organisms. The
activity of this enzyme is crucial for maintaining the
required levels of acetyl-CoA, a key intermediate in
many important biosynthetic and catabolic processes.
Acetyl-CoA is used in the biosynthesis of glucose, fatty
acids, and cholesterol. It can also be used in the
production of energy in the citric acid cycle.
Eukaryotes typically have two isoforms of acetyl-CoA
synthetase, a cytosolic form involved in biosynthetic
processes and a mitochondrial form primarily involved in
energy generation.
Length = 602
Score = 49.5 bits (119), Expect = 1e-06
Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 52 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
EDGY ++GR+ D+I G + E+E + +HP V EA G PDE GE + + L
Sbjct: 475 EDGYYWILGRVDDVINVSGHRLGTAEVESALVSHPAVAEAAVVGKPDEVKGEAIYAFVTL 534
Query: 112 KENAKLNADDIRTFCKGKVKRKISCI----FIIIV 142
K+ + + D++R K V+++I I II V
Sbjct: 535 KDGVEPS-DELRKELKKHVRKEIGPIATPDEIIFV 568
Score = 46.4 bits (111), Expect = 1e-05
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
EDGY ++GR+ D+I G + E+E + +HP V EA G PDE GE + + L
Sbjct: 475 EDGYYWILGRVDDVINVSGHRLGTAEVESALVSHPAVAEAAVVGKPDEVKGEAIYAFVTL 534
Query: 344 KENAKLNADDIRTFCKGKVSK 364
K+ + + D++R K V K
Sbjct: 535 KDGVEPS-DELRKELKKHVRK 554
>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated.
Length = 471
Score = 49.6 bits (119), Expect = 2e-06
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 46 DQFVLREDGYGQVVGRIK-DMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 104
D V+ DG ++VGR D+I GG I EIE + HP V EA GVPD+ +G+
Sbjct: 356 DVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQR 415
Query: 105 V 105
+
Sbjct: 416 I 416
Score = 49.2 bits (118), Expect = 2e-06
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 281 VLREDGYGQVVGRIK-DMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 337
V+ DG ++VGR D+I GG I EIE + HP V EA GVPD+ +G+ +
Sbjct: 359 VVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRI 416
>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated.
Length = 576
Score = 49.4 bits (118), Expect = 2e-06
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 52 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 103
DG+ + R +D+I GGE IY ++E +I P V+E G PD++ GE
Sbjct: 442 RDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGE 493
Score = 49.4 bits (118), Expect = 2e-06
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 335
DG+ + R +D+I GGE IY ++E +I P V+E G PD++ GE
Sbjct: 442 RDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGE 493
>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase. This family
contains one of three readily separable clades of
proteins in the group of acetate and propionate--CoA
ligases. Characterized members of this family act on
propionate. From propionyl-CoA, there is a cyclic
degradation pathway: it is ligated by PrpC to the TCA
cycle intermediate oxaloacetate, acted upon further by
PrpD and an aconitase, then cleaved by PrpB to pyruvate
and the TCA cycle intermediate succinate.
Length = 628
Score = 49.5 bits (118), Expect = 2e-06
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 32 FVELCLLLFP---FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNV 88
F++ F + S D + EDGY ++GR D+I G + +EIEE + +HP+V
Sbjct: 461 FLKTYWSHFKRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSV 520
Query: 89 LEAYAYGVPDERMGEEVGISIKLKENAKLNADDIR 123
E GV DE G+ + LKE+
Sbjct: 521 AEVAVVGVHDELKGQVAVVFAILKESDSAGDAHDP 555
Score = 49.1 bits (117), Expect = 2e-06
Identities = 25/72 (34%), Positives = 36/72 (50%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
EDGY ++GR D+I G + +EIEE + +HP+V E GV DE G+ + L
Sbjct: 484 EDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAIL 543
Query: 344 KENAKLNADDIR 355
KE+
Sbjct: 544 KESDSAGDAHDP 555
>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS) similar to mycosubtilin
synthase subunit A (MycA). The adenylation (A) domain
of NRPS recognizes a specific amino acid or hydroxy acid
and activates it as (amino)-acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family includes
NRPS similar to mycosubtilin synthase subunit A (MycA).
Mycosubtilin, which is characterized by a beta-amino
fatty acid moiety linked to the circular heptapeptide
Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin
family of lipopeptide antibiotics. The mycosubtilin
synthase subunit A (MycA) combines functional domains
derived from peptide synthetases, amino transferases,
and fatty acid synthases. Nonribosomal peptide
synthetases are large multifunction enzymes that
synthesize many therapeutically useful peptides. NRPS
has a distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions.
Length = 499
Score = 49.2 bits (118), Expect = 2e-06
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 52 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVL--EAYAYGVPDERMG-EEVGIS 108
+G + GR KD+II G+N YP +IE + + A GV DE+ EEV I
Sbjct: 380 RNGRLVITGRAKDIIIVNGQNYYPHDIERVAEQVEGIKLGRVAACGVYDEKEQSEEVVIF 439
Query: 109 IKLKENAKLNADDIRTFCKGKVKRKIS 135
++ ++ + DD K+KR ++
Sbjct: 440 VEYRQ----SLDDFTPLAL-KIKRHVN 461
Score = 47.6 bits (114), Expect = 7e-06
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVL--EAYAYGVPDERMG-EEVGIS 340
+G + GR KD+II G+N YP +IE + + A GV DE+ EEV I
Sbjct: 380 RNGRLVITGRAKDIIIVNGQNYYPHDIERVAEQVEGIKLGRVAACGVYDEKEQSEEVVIF 439
Query: 341 IKLKENAK 348
++ +++
Sbjct: 440 VEYRQSLD 447
>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional.
Length = 570
Score = 49.1 bits (118), Expect = 2e-06
Identities = 24/62 (38%), Positives = 32/62 (51%)
Query: 52 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
EDGY GR+ D+I GE + P E+E + HP V EA G PD GE + + L
Sbjct: 444 EDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVAL 503
Query: 112 KE 113
+
Sbjct: 504 RP 505
Score = 49.1 bits (118), Expect = 2e-06
Identities = 24/62 (38%), Positives = 32/62 (51%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
EDGY GR+ D+I GE + P E+E + HP V EA G PD GE + + L
Sbjct: 444 EDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVAL 503
Query: 344 KE 345
+
Sbjct: 504 RP 505
>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1.
Length = 546
Score = 49.2 bits (117), Expect = 2e-06
Identities = 27/82 (32%), Positives = 43/82 (52%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
+DG +V RIK++I G + P E+E + THP+V +A +PDE GE + +
Sbjct: 429 DDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVI 488
Query: 344 KENAKLNADDIRTFCKGKVSKF 365
AK + +DI F V+ +
Sbjct: 489 NPKAKESEEDILNFVAANVAHY 510
Score = 48.1 bits (114), Expect = 5e-06
Identities = 27/79 (34%), Positives = 41/79 (51%)
Query: 52 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
+DG +V RIK++I G + P E+E + THP+V +A +PDE GE + +
Sbjct: 429 DDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVI 488
Query: 112 KENAKLNADDIRTFCKGKV 130
AK + +DI F V
Sbjct: 489 NPKAKESEEDILNFVAANV 507
>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated.
Length = 545
Score = 48.5 bits (116), Expect = 3e-06
Identities = 18/33 (54%), Positives = 22/33 (66%), Gaps = 6/33 (18%)
Query: 54 GY----GQVV--GRIKDMIIRGGENIYPKEIEE 80
GY G+VV GR+KD+II G NIYP +IE
Sbjct: 422 GYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIER 454
Score = 48.5 bits (116), Expect = 3e-06
Identities = 18/33 (54%), Positives = 22/33 (66%), Gaps = 6/33 (18%)
Query: 286 GY----GQVV--GRIKDMIIRGGENIYPKEIEE 312
GY G+VV GR+KD+II G NIYP +IE
Sbjct: 422 GYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIER 454
>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional.
Length = 629
Score = 48.0 bits (115), Expect = 5e-06
Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 52 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 103
DGY ++GR D+I G + +EIEE I +HP V E GV D G+
Sbjct: 485 ADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQ 536
Score = 48.0 bits (115), Expect = 5e-06
Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 335
DGY ++GR D+I G + +EIEE I +HP V E GV D G+
Sbjct: 485 ADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQ 536
>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated.
Length = 578
Score = 47.6 bits (114), Expect = 6e-06
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 58 VVGRIKDMIIRGGENIYPKEIEEFIQ--THPNVLEAYAYGVPDERMGEEVGISIKLKENA 115
+VGRIKD++I G N YP +IE IQ T V A VPD+ + V I I+LK+
Sbjct: 454 IVGRIKDLLIVDGRNHYPDDIEATIQEITGGRVA---AISVPDDGTEKLVAI-IELKKRG 509
Query: 116 KLNADDIRTFCKGKVKRKI 134
+ + + VKR++
Sbjct: 510 DSDEEAMDRL--RTVKREV 526
Score = 44.9 bits (107), Expect = 5e-05
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 290 VVGRIKDMIIRGGENIYPKEIEEFIQ--THPNVLEAYAYGVPDERMGEEVGISIKLKENA 347
+VGRIKD++I G N YP +IE IQ T V A VPD+ + V I I+LK+
Sbjct: 454 IVGRIKDLLIVDGRNHYPDDIEATIQEITGGRVA---AISVPDDGTEKLVAI-IELKKRG 509
Query: 348 KLNADDIRTFC 358
+ + +
Sbjct: 510 DSDEEAMDRLR 520
>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like.
Length = 560
Score = 47.5 bits (113), Expect = 8e-06
Identities = 23/83 (27%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE-EVGISIK 342
EDGY +V R+K++I G I P ++E + +HP +++A VPD+ GE V ++
Sbjct: 442 EDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVR 501
Query: 343 LKENAKLNADDIRTFCKGKVSKF 365
++ + L+ + + + +V+ +
Sbjct: 502 -RQGSTLSQEAVINYVAKQVAPY 523
Score = 47.1 bits (112), Expect = 9e-06
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 52 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 103
EDGY +V R+K++I G I P ++E + +HP +++A VPD+ GE
Sbjct: 442 EDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGE 493
>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family. Characterized
members of this protein family include benzoate-CoA
ligase, 4-hydroxybenzoate-CoA ligase,
2-aminobenzoate-CoA ligase, etc. Members are related to
fatty acid and acetate CoA ligases.
Length = 508
Score = 45.6 bits (108), Expect = 2e-05
Identities = 24/56 (42%), Positives = 30/56 (53%)
Query: 44 SRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDE 99
S D++V +DG GR DM+ G + P EIE + HP VLEA GV DE
Sbjct: 388 SGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDE 443
Score = 42.5 bits (100), Expect = 2e-04
Identities = 22/53 (41%), Positives = 28/53 (52%)
Query: 279 QFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDE 331
++V +DG GR DM+ G + P EIE + HP VLEA GV DE
Sbjct: 391 KYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDE 443
>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a
family of nonribosomal peptide synthetases (NRPSs)
synthesizing toxins and antitumor agents. The
adenylation (A) domain of NRPS recognizes a specific
amino acid or hydroxy acid and activates it as an
(amino)-acyl adenylate by hydrolysis of ATP. The
activated acyl moiety then forms a thioester to the
enzyme-bound cofactor phosphopantetheine of a peptidyl
carrier protein domain. This family includes NRPSs that
synthesize toxins and antitumor agents; for example,
TubE for Tubulysine, CrpA for cryptophycin, TdiA for
terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for
Valinomycin. Nonribosomal peptide synthetases are large
multifunctional enzymes which synthesize many
therapeutically useful peptides. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and, in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 560
Score = 43.8 bits (104), Expect = 9e-05
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 56 GQVV--GRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY--AYGVPDERMGEE 104
G++ GR KDMII G N Y EIE ++ P V ++ A V D G +
Sbjct: 442 GRLTITGREKDMIIINGVNYYNHEIEAAVEQVPGVEPSFTAACAVRDAGSGTD 494
Score = 43.8 bits (104), Expect = 9e-05
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 288 GQVV--GRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY--AYGVPDERMGEE 336
G++ GR KDMII G N Y EIE ++ P V ++ A V D G +
Sbjct: 442 GRLTITGREKDMIIINGVNYYNHEIEAAVEQVPGVEPSFTAACAVRDAGSGTD 494
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated.
Length = 4334
Score = 42.5 bits (100), Expect = 3e-04
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 51 REDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVL---EAYAYGVPDERMGEEVGI 107
DG V GR+KDM+I G N+YP++IE+ ++ V+ A+ V + GEE GI
Sbjct: 439 LRDGELFVTGRLKDMLIVRGHNLYPQDIEKTVEREVEVVRKGRVAAFAVNHQ--GEE-GI 495
Query: 108 SI 109
I
Sbjct: 496 GI 497
Score = 42.5 bits (100), Expect = 3e-04
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 283 REDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVL---EAYAYGVPDERMGEEVGI 339
DG V GR+KDM+I G N+YP++IE+ ++ V+ A+ V + GEE GI
Sbjct: 439 LRDGELFVTGRLKDMLIVRGHNLYPQDIEKTVEREVEVVRKGRVAAFAVNHQ--GEE-GI 495
Query: 340 SI 341
I
Sbjct: 496 GI 497
Score = 30.5 bits (69), Expect = 1.9
Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 50 LREDGYGQVVGRIKDMI-IRGGENIYPKEIEEFIQTHPNVLEA 91
LR DG + VGRI + IRG I EIE + HP V EA
Sbjct: 2578 LRADGLVEYVGRIDHQVKIRGFR-IELGEIESRLLEHPAVREA 2619
Score = 30.5 bits (69), Expect = 1.9
Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 282 LREDGYGQVVGRIKDMI-IRGGENIYPKEIEEFIQTHPNVLEA 323
LR DG + VGRI + IRG I EIE + HP V EA
Sbjct: 2578 LRADGLVEYVGRIDHQVKIRGFR-IELGEIESRLLEHPAVREA 2619
>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 433
Score = 41.2 bits (97), Expect = 5e-04
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 3/87 (3%)
Query: 282 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341
EDGY VGR D+ I P E+E + HP V EA PD I
Sbjct: 318 RDEDGYLWFVGRADDVFKSSDYRISPFEVESALLEHPAVAEAAVVPSPDPIRLAVPKAYI 377
Query: 342 KLKENAKLNAD---DIRTFCKGKVSKF 365
LK + + + ++ + +++ +
Sbjct: 378 VLKPGYEPSRELALELFAHVRERLAPY 404
Score = 40.8 bits (96), Expect = 8e-04
Identities = 25/93 (26%), Positives = 35/93 (37%), Gaps = 8/93 (8%)
Query: 50 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 109
EDGY VGR D+ I P E+E + HP V EA PD I
Sbjct: 318 RDEDGYLWFVGRADDVFKSSDYRISPFEVESALLEHPAVAEAAVVPSPDPIRLAVPKAYI 377
Query: 110 KLKENAKLNAD---DIRTFCKG-----KVKRKI 134
LK + + + ++ + K R+I
Sbjct: 378 VLKPGYEPSRELALELFAHVRERLAPYKRIRRI 410
>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional.
Length = 612
Score = 39.3 bits (92), Expect = 0.003
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 53 DGYGQVVGRIKDMIIRGGENIYPKEIEEFI-QTHPNVLEAY--AYGVPDERMGEEV 105
DG + GRI D+I+ G N YP++IE + + P V Y A+ VP E V
Sbjct: 488 DGELYITGRIADLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAEDNERLV 543
Score = 39.3 bits (92), Expect = 0.003
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 285 DGYGQVVGRIKDMIIRGGENIYPKEIEEFI-QTHPNVLEAY--AYGVPDERMGEEV 337
DG + GRI D+I+ G N YP++IE + + P V Y A+ VP E V
Sbjct: 488 DGELYITGRIADLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAEDNERLV 543
>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase.
Length = 666
Score = 38.3 bits (89), Expect = 0.006
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 44 SRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 103
SRD+ DGY + GR+ D+I G I E+E + +HP EA G+ E G+
Sbjct: 522 SRDK-----DGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQ 576
Query: 104 EVGISIKLKENAKLNAD 120
+ + L E + +
Sbjct: 577 GIYAFVTLVEGVPYSEE 593
Score = 37.2 bits (86), Expect = 0.013
Identities = 20/69 (28%), Positives = 33/69 (47%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
+DGY + GR+ D+I G I E+E + +HP EA G+ E G+ + + L
Sbjct: 525 KDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTL 584
Query: 344 KENAKLNAD 352
E + +
Sbjct: 585 VEGVPYSEE 593
>gnl|CDD|131210 TIGR02155, PA_CoA_ligase, phenylacetate-CoA ligase.
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the
first step in aromatic catabolism of phenylacetic acid
(PA) into phenylacetyl-CoA (PA-CoA). Often located in a
conserved gene cluster with enzymes involved in
phenylacetic acid activation (paaG/H/I/J),
phenylacetate-CoA ligase has been found among the
proteobacteria as well as in gram positive prokaryotes.
In the B-subclass proteobacterium Azoarcus evansii,
phenylacetate-CoA ligase has been shown to be induced
under aerobic and anaerobic growth conditions. It
remains unclear however, whether this induction is due
to the same enzyme or to another isoenzyme restricted to
specific anaerobic growth conditions [Energy metabolism,
Other].
Length = 422
Score = 37.9 bits (88), Expect = 0.006
Identities = 20/94 (21%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 57 QVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK-ENA 115
++ GR DM+I G N++P ++EE I + Y + +E+ + ++LK E+
Sbjct: 312 RITGRSDDMLIIRGVNVFPTQLEEVILKMDELSPHYQLELTRNGHMDELTLKVELKPESY 371
Query: 116 KLNADDIRTFCKGKVKRKISCIFIIIVRIS-CEC 148
L + + G+++ I + + + E
Sbjct: 372 TLRLHEQASLLAGEIQHTIKQEVGVSMDVHLVEP 405
Score = 35.6 bits (82), Expect = 0.039
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 289 QVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK---- 344
++ GR DM+I G N++P ++EE I + Y + +E+ + ++LK
Sbjct: 312 RITGRSDDMLIIRGVNVFPTQLEEVILKMDELSPHYQLELTRNGHMDELTLKVELKPESY 371
Query: 345 -----ENAKLNADDIRTFCKGKV 362
E A L A +I+ K +V
Sbjct: 372 TLRLHEQASLLAGEIQHTIKQEV 394
>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA
synthetase (VL-FACS). This family of very long-chain
fatty acid CoA synthetase is named bubblegum because
Drosophila melanogaster mutant bubblegum (BGM) has
elevated levels of very-long-chain fatty acids (VLCFA)
caused by a defective gene of this family. The human
homolog (hsBG) has been characterized as a very long
chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. VL-FACS is
involved in the first reaction step of very long chain
fatty acid degradation. It catalyzes the formation of
fatty acyl-CoA in a two-step reaction: the formation of
a fatty acyl-AMP molecule as an intermediate, and the
formation of a fatty acyl-CoA. Free fatty acids must be
"activated" to their CoA thioesters before participating
in most catabolic and anabolic reactions.
Length = 594
Score = 37.8 bits (88), Expect = 0.008
Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 50 LREDGYGQVVGRIKDMIIR-GGENIYPKEIEEFIQT 84
L +DG+ + GRIK++II GGEN+ P IEE ++
Sbjct: 429 LDDDGFLYITGRIKELIITAGGENVPPVPIEEAVKK 464
Score = 37.8 bits (88), Expect = 0.008
Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 282 LREDGYGQVVGRIKDMIIR-GGENIYPKEIEEFIQT 316
L +DG+ + GRIK++II GGEN+ P IEE ++
Sbjct: 429 LDDDGFLYITGRIKELIITAGGENVPPVPIEEAVKK 464
>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.
Length = 637
Score = 37.8 bits (89), Expect = 0.008
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 52 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 105
EDGY + GR+ D++ G + EIE + HP V EA G PD+ G+ +
Sbjct: 495 EDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGI 548
Score = 37.8 bits (89), Expect = 0.008
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 337
EDGY + GR+ D++ G + EIE + HP V EA G PD+ G+ +
Sbjct: 495 EDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGI 548
>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated.
Length = 631
Score = 37.4 bits (87), Expect = 0.012
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 53 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT-HPNVLEAY--AYGVPDERMGEEV 105
DG + GR+KD++I G N YP+++E Q + Y A+ VP ++ + V
Sbjct: 476 DGELYITGRVKDLVIIDGRNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVV 531
Score = 37.4 bits (87), Expect = 0.012
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 285 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT-HPNVLEAY--AYGVPDERMGEEV 337
DG + GR+KD++I G N YP+++E Q + Y A+ VP ++ + V
Sbjct: 476 DGELYITGRVKDLVIIDGRNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVV 531
>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of
bifunctional fatty acid transporter/very-long-chain
acyl-CoA synthetase in fungi. Fatty acid transport
protein (FATP) transports long-chain or very-long-chain
fatty acids across the plasma membrane. FATPs also have
fatty acid CoA synthetase activity, thus playing dual
roles as fatty acid transporters and its activation
enzymes. FATPs are the key players in the trafficking of
exogenous fatty acids into the cell and in intracellular
fatty acid homeostasis. Members of this family are
fungal FATPs, including FAT1 from Cochliobolus
heterostrophus.
Length = 468
Score = 37.1 bits (86), Expect = 0.014
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 50 LREDGYGQV--VGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGV 96
LR+D G+ + R+ D EN+ E+ + + P+V EA YGV
Sbjct: 346 LRQDADGRWYFLDRLGDTFRWKSENVSTGEVADVLGAIPSVAEANVYGV 394
Score = 37.1 bits (86), Expect = 0.014
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 282 LREDGYGQV--VGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGV 328
LR+D G+ + R+ D EN+ E+ + + P+V EA YGV
Sbjct: 346 LRQDADGRWYFLDRLGDTFRWKSENVSTGEVADVLGAIPSVAEANVYGV 394
>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated.
Length = 600
Score = 36.4 bits (85), Expect = 0.022
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 43 LSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVP 97
L RD G+ Q V R+ D GEN+ E+E + P V EA YGV
Sbjct: 446 LMRDD----GFGHAQFVDRLGDTFRWKGENVATTEVENALSGFPGVEEAVVYGVE 496
Score = 36.4 bits (85), Expect = 0.023
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 281 VLREDGYG--QVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVP 329
++R+DG+G Q V R+ D GEN+ E+E + P V EA YGV
Sbjct: 446 LMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALSGFPGVEEAVVYGVE 496
>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional.
Length = 647
Score = 36.3 bits (84), Expect = 0.026
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 52 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPD 98
E+GY +V R D I G + IE I HP VLE + G+ D
Sbjct: 504 ENGYYTIVSRSDDQIKISGNKVQLNTIETSILKHPLVLECCSIGIYD 550
Score = 36.3 bits (84), Expect = 0.026
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPD 330
E+GY +V R D I G + IE I HP VLE + G+ D
Sbjct: 504 ENGYYTIVSRSDDQIKISGNKVQLNTIETSILKHPLVLECCSIGIYD 550
>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated.
Length = 705
Score = 36.2 bits (83), Expect = 0.026
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 44 SRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGV 96
+RD+ + DG+ R D + GG N+ P+E+E I V EA V
Sbjct: 369 TRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAV 421
Score = 31.9 bits (72), Expect = 0.66
Identities = 16/52 (30%), Positives = 23/52 (44%)
Query: 277 RYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGV 328
R + + DG+ R D + GG N+ P+E+E I V EA V
Sbjct: 370 RDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAV 421
>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein]
ligase; Validated.
Length = 525
Score = 35.1 bits (81), Expect = 0.051
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 58 VVGRIKDMIIRGGENIYPKEIE 79
V GR K++I G NI+P EIE
Sbjct: 413 VCGRAKELITVAGRNIFPTEIE 434
Score = 35.1 bits (81), Expect = 0.051
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 290 VVGRIKDMIIRGGENIYPKEIE 311
V GR K++I G NI+P EIE
Sbjct: 413 VCGRAKELITVAGRNIFPTEIE 434
>gnl|CDD|224458 COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme metabolism].
Length = 438
Score = 35.0 bits (81), Expect = 0.051
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 57 QVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK 116
++ GR DM+I G N++P +IE + P V Y + +E+ + ++L+ A+
Sbjct: 328 RIEGRSDDMLIVRGVNVFPSQIERVLLQIPEVTPHYQIILTRNGGLDELTVRVELENEAE 387
Query: 117 LNADDIRTFCKGKVKRKISCIFIIIVRISCE 147
D+ R K+ + I + VR+ E
Sbjct: 388 ELEDERRL--AKKLIKNI--KSELGVRVEVE 414
Score = 31.5 bits (72), Expect = 0.70
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 289 QVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY 324
++ GR DM+I G N++P +IE + P V Y
Sbjct: 328 RIEGRSDDMLIVRGVNVFPSQIERVLLQIPEVTPHY 363
>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated.
Length = 540
Score = 34.3 bits (79), Expect = 0.098
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
R DG R+ D + GG + P EIE ++ P V A G R G+ V ++
Sbjct: 415 YTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGA--TRDGKTVPVA 472
Query: 341 -IKLKENAKLNADDIRTFCKGKVSKF 365
+ + A + + C+ ++ F
Sbjct: 473 FVIPTDGASPDEAGLMAACREALAGF 498
Score = 32.4 bits (74), Expect = 0.34
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 42 FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
F + D R DG R+ D + GG + P EIE ++ P V A G R
Sbjct: 408 FRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGA--TRD 465
Query: 102 GEEVGIS-IKLKENAKLNADDIRTFCK 127
G+ V ++ + + A + + C+
Sbjct: 466 GKTVPVAFVIPTDGASPDEAGLMAACR 492
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional.
Length = 5163
Score = 34.2 bits (78), Expect = 0.13
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 253 AMKSKRGLPARVKAPDRK-KCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIE 311
+ ++R +P+ A +R + RY R DG + GRI + G I EIE
Sbjct: 870 GLTAERFVPSPFVAGERMYRTGDLARY----RADGVIEYAGRIDHQVKLRGLRIELGEIE 925
Query: 312 EFIQTHPNVLEA 323
+ HP V EA
Sbjct: 926 ARLLEHPWVREA 937
Score = 32.6 bits (74), Expect = 0.37
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 50 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEA 91
R DG + GRI + G I EIE + HP V EA
Sbjct: 896 YRADGVIEYAGRIDHQVKLRGLRIELGEIEARLLEHPWVREA 937
Score = 29.9 bits (67), Expect = 3.1
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Query: 51 REDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY----------AYGVPDER 100
R DG + +GR+ + G I EIE + HP V EA AY VP++
Sbjct: 3435 RADGVIEYIGRVDHQVKIRGFRIELGEIEARLLEHPWVREAVVLAVDGRQLVAYVVPEDE 3494
Query: 101 MGE 103
G+
Sbjct: 3495 AGD 3497
Score = 29.9 bits (67), Expect = 3.1
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Query: 283 REDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY----------AYGVPDER 332
R DG + +GR+ + G I EIE + HP V EA AY VP++
Sbjct: 3435 RADGVIEYIGRVDHQVKIRGFRIELGEIEARLLEHPWVREAVVLAVDGRQLVAYVVPEDE 3494
Query: 333 MGE 335
G+
Sbjct: 3495 AGD 3497
Score = 29.2 bits (65), Expect = 5.0
Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 15/65 (23%)
Query: 51 REDGYGQVVGRIKDMI-IRGGENIYPKEIEEFIQTHPNVLEA-------------YAYGV 96
R DG + +GRI + IRG I EIE +Q HP V EA AY V
Sbjct: 2392 RADGVVEYLGRIDHQVKIRGFR-IELGEIEARLQAHPAVREAVVVAQDGASGKQLVAYVV 2450
Query: 97 PDERM 101
PD+
Sbjct: 2451 PDDAA 2455
Score = 29.2 bits (65), Expect = 5.0
Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 15/65 (23%)
Query: 283 REDGYGQVVGRIKDMI-IRGGENIYPKEIEEFIQTHPNVLEA-------------YAYGV 328
R DG + +GRI + IRG I EIE +Q HP V EA AY V
Sbjct: 2392 RADGVVEYLGRIDHQVKIRGFR-IELGEIEARLQAHPAVREAVVVAQDGASGKQLVAYVV 2450
Query: 329 PDERM 333
PD+
Sbjct: 2451 PDDAA 2455
>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase.
Length = 537
Score = 33.4 bits (77), Expect = 0.18
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 58 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE-EVGISIKLKENAK 116
+V R+K++I G + P E+E + +HP++ +A + DE GE V ++ ++
Sbjct: 430 IVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVR-SNGSE 488
Query: 117 LNADDIRTFCKGKV---KRKISCIFI 139
+ D+I+ F +V KR F+
Sbjct: 489 ITEDEIKQFVAKQVVFYKRIHKVFFV 514
Score = 33.0 bits (76), Expect = 0.23
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 290 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE-EVGISIKLKENAK 348
+V R+K++I G + P E+E + +HP++ +A + DE GE V ++ ++
Sbjct: 430 IVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVR-SNGSE 488
Query: 349 LNADDIRTFCKGKVSK 364
+ D+I+ F V+K
Sbjct: 489 ITEDEIKQF----VAK 500
>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Bacillus subtilis
termination module Surfactin (SrfA-C). The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions. This family includes the
adenylation domain of the Bacillus subtilis termination
module (Surfactin domain, SrfA-C) which recognizes a
specific amino acid building block, which is then
activated and transferred to the terminal thiol of the
4'-phosphopantetheine (Ppan) arm of the downstream
peptidyl carrier protein (PCP) domain.
Length = 474
Score = 33.3 bits (77), Expect = 0.18
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 50 LREDGYGQVVGRIKDMI-IRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 108
R DG + +GRI + IRG I EIE+ + HP V EA + E + +
Sbjct: 368 WRPDGNIEFLGRIDRQVKIRG-FRIELGEIEQALLQHPGVREAAV--LVREDAAGDKRLV 424
Query: 109 IKLKENAKLNADDIRTFCK 127
+ L+A ++R
Sbjct: 425 AYVVARGALDAAELRAHLA 443
Score = 33.3 bits (77), Expect = 0.18
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 282 LREDGYGQVVGRIKDMI-IRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
R DG + +GRI + IRG I EIE+ + HP V EA + E + +
Sbjct: 368 WRPDGNIEFLGRIDRQVKIRG-FRIELGEIEQALLQHPGVREAAV--LVREDAAGDKRLV 424
Query: 341 IKLKENAKLNADDIRTFCK 359
+ L+A ++R
Sbjct: 425 AYVVARGALDAAELRAHLA 443
>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 448
Score = 33.4 bits (77), Expect = 0.19
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 50 LREDGYGQVVGRIKDMIIRG-GENIYPKEIEEFIQTHPNVLEAYAYG 95
L E+GY + GR K++II G N+ P+ +E +Q P + +A +G
Sbjct: 336 LDEEGYLYINGRKKNLIITSFGRNVSPEWVESELQQAPAIAQAVVFG 382
Score = 33.4 bits (77), Expect = 0.19
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 282 LREDGYGQVVGRIKDMIIRG-GENIYPKEIEEFIQTHPNVLEAYAYG 327
L E+GY + GR K++II G N+ P+ +E +Q P + +A +G
Sbjct: 336 LDEEGYLYINGRKKNLIITSFGRNVSPEWVESELQQAPAIAQAVVFG 382
>gnl|CDD|213281 cd05913, PaaK, Phenylacetate-CoA ligase (also known as PaaK). PaaK
catalyzes the first step in the aromatic degradation
pathway, by converting phenylacetic acid (PA) into
phenylacetyl-CoA (PA-CoA). Phenylacetate-CoA ligase has
been found in proteobacteria as well as gram positive
prokaryotes. The enzyme is specifically induced after
aerobic growth in a chemically defined medium containing
PA or phenylalanine (Phe) as the sole carbon source.
PaaKs are members of the adenylate-forming enzyme (AFE)
family. However, sequence comparison reveals divergent
features of PaaK with respect to the superfamily,
including a novel N-terminal sequence.
Length = 424
Score = 33.3 bits (76), Expect = 0.21
Identities = 14/71 (19%), Positives = 32/71 (45%)
Query: 57 QVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK 116
++ GR D +I G N++P +IEE + P + Y + +E+ + ++L + +
Sbjct: 315 RITGRSDDXLIIRGVNVFPSQIEEILVKFPELSPHYQITLERVGHLDELIVEVELSDESA 374
Query: 117 LNADDIRTFCK 127
+ +
Sbjct: 375 DTYIEREKIRR 385
Score = 33.3 bits (76), Expect = 0.21
Identities = 14/71 (19%), Positives = 32/71 (45%)
Query: 289 QVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK 348
++ GR D +I G N++P +IEE + P + Y + +E+ + ++L + +
Sbjct: 315 RITGRSDDXLIIRGVNVFPSQIEEILVKFPELSPHYQITLERVGHLDELIVEVELSDESA 374
Query: 349 LNADDIRTFCK 359
+ +
Sbjct: 375 DTYIEREKIRR 385
>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
bond to the enzyme-bound cofactor phosphopantetheine of
a peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 445
Score = 31.6 bits (73), Expect = 0.66
Identities = 26/97 (26%), Positives = 35/97 (36%), Gaps = 36/97 (37%)
Query: 51 REDGYGQVVGRIKDMI-IRGGENIY---PKEIEEFIQTHPNVLEA--------------Y 92
DG + +GR D + IRG Y EIE + HP V EA
Sbjct: 338 LPDGNLEFLGRADDQVKIRG----YRIELGEIEAALLAHPGVREAVVVAREDGAGEKRLV 393
Query: 93 AYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGK 129
AY VP A+L+A ++R F +
Sbjct: 394 AYVVPA--------------AGAELDAAELRAFLAER 416
Score = 31.6 bits (73), Expect = 0.66
Identities = 26/97 (26%), Positives = 35/97 (36%), Gaps = 36/97 (37%)
Query: 283 REDGYGQVVGRIKDMI-IRGGENIY---PKEIEEFIQTHPNVLEA--------------Y 324
DG + +GR D + IRG Y EIE + HP V EA
Sbjct: 338 LPDGNLEFLGRADDQVKIRG----YRIELGEIEAALLAHPGVREAVVVAREDGAGEKRLV 393
Query: 325 AYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGK 361
AY VP A+L+A ++R F +
Sbjct: 394 AYVVPA--------------AGAELDAAELRAFLAER 416
>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including salinosporamide A
polyketide synthase. The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
This family includes the myxovirescin (TA) antibiotic
biosynthetic gene in Myxococcus xanthus; TA production
plays a role in predation. It also includes the
salinosporamide A polyketide synthase which is involved
in the biosynthesis of salinosporamide A, a marine
microbial metabolite whose chlorine atom is crucial for
potent proteasome inhibition and anticancer activity.
Length = 438
Score = 31.4 bits (72), Expect = 0.67
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 46 DQFVLREDGYGQVVGRIKDMI-IRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 104
D R DG + +GR D + IRG I EIE ++ HP V +A V +E G++
Sbjct: 326 DLVRWRPDGRLEYLGRADDQVKIRG-FRIELGEIEAALRAHPGVADAVVV-VREEGPGDQ 383
Query: 105 --VGISIKLKENAKLNADDIRTF 125
V + K A +A+ +R
Sbjct: 384 RLVAYVV-PKAGAAPDAEALRAA 405
Score = 30.6 bits (70), Expect = 1.3
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 282 LREDGYGQVVGRIKDMI-IRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE--VG 338
R DG + +GR D + IRG I EIE ++ HP V +A V +E G++ V
Sbjct: 330 WRPDGRLEYLGRADDQVKIRG-FRIELGEIEAALRAHPGVADAVVV-VREEGPGDQRLVA 387
Query: 339 ISIKLKENAKLNADDIRTF 357
+ K A +A+ +R
Sbjct: 388 YVV-PKAGAAPDAEALRAA 405
>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA).
DltA belongs to the class I AMP-forming adenylation
domain superfamily, which also includes acetyl-CoA
synthetase, luciferase, and the adenylation domains of
non-ribosomal synthetases. It catalyzes the two-step
activation reaction of D-alanine: the formation of a
substrate-AMP molecule as an intermediate, and then the
transfer of the amino acid adenylate to teichoic acid in
the biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram-positive bacteria.
Length = 447
Score = 30.6 bits (70), Expect = 1.3
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 51 REDGYGQVV--GRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 108
+ G +V GR I G I +EIE ++ P V EA VP + V +
Sbjct: 339 YLEDDGLLVYLGRKDFQIKLHGYRIELEEIEAALRALPGVEEAVVLPVPKG--EKVVRLV 396
Query: 109 --IKLKENAKLNADDIRTFCKGKV 130
+ KE A L+ ++ K ++
Sbjct: 397 AFVVGKEGA-LDTKALKKELKKRL 419
Score = 30.6 bits (70), Expect = 1.3
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 283 REDGYGQVV--GRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
+ G +V GR I G I +EIE ++ P V EA VP + V +
Sbjct: 339 YLEDDGLLVYLGRKDFQIKLHGYRIELEEIEAALRALPGVEEAVVLPVPKG--EKVVRLV 396
Query: 341 --IKLKENAKLNADDIRTFCKGKV 362
+ KE A L+ ++ K ++
Sbjct: 397 AFVVGKEGA-LDTKALKKELKKRL 419
>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein
synthetase (also called 2-acylglycerophosphoethanolamine
acyltransferase, Aas). Acyl-acyl carrier protein
synthase (Aas) is a membrane protein responsible for a
minor pathway of incorporating exogenous fatty acids
into membrane phospholipids. Its in vitro activity is
characterized by the ligation of free fatty acids
between 8 and 18 carbons in length to the acyl carrier
protein sulfydryl group (ACP-SH) in the presence of ATP
and Mg2+. However, its in vivo function is as a
2-acylglycerophosphoethanolamine (2-acyl-GPE)
acyltransferase. The reaction occurs in two steps: the
acyl chain is first esterified to acyl carrier protein
(ACP) via a thioester bond, followed by a second step
where the acyl chain is transferred to a
2-acyllysophospholipid, thus completing the
transacylation reaction. This model represents the
C-terminal domain of the enzyme, which belongs to the
class I adenylate-forming enzyme family, including
acyl-CoA synthetases.
Length = 489
Score = 30.3 bits (69), Expect = 1.5
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 52 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHP--NVLEAYAYGVPDERMGEEV 105
EDG+ +VGR+K GGE + +EE + + L A A VPDE+ GE++
Sbjct: 380 EDGFLTIVGRLKRFAKIGGEMVSLTAVEELLSEILPEDSLHA-AVEVPDEKKGEKI 434
Score = 30.3 bits (69), Expect = 1.5
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHP--NVLEAYAYGVPDERMGEEV 337
EDG+ +VGR+K GGE + +EE + + L A A VPDE+ GE++
Sbjct: 380 EDGFLTIVGRLKRFAKIGGEMVSLTAVEELLSEILPEDSLHA-AVEVPDEKKGEKI 434
>gnl|CDD|131425 TIGR02372, 4_coum_CoA_lig, 4-coumarate--CoA ligase, photoactive
yellow protein activation family. This model represents
the 4-coumarate--CoA ligase associated with biosynthesis
of the 4-hydroxy cinnamyl (also called 4-coumaroyl)
chromophore covalently linked to a Cys residue in
photoactive yellow protein of Rhodobacter spp. and
Ectothiorhodospira halophila. This enzyme is designated
6.2.1.12 and therefore joins a number of plant enzymes
linked to lignin biosynthesis and given similar names.
Length = 386
Score = 29.9 bits (67), Expect = 2.1
Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 18/80 (22%)
Query: 39 LFPFLSRDQFVLREDGYGQVV-----------------GRIKDMIIRGGENIYPKEIEEF 81
L P L+ L G + + GR +++ GG N+ P + +
Sbjct: 257 LLPDLACFADTLSSAGLARRLDLQDRLAWDKDGGFTILGRKDEILQVGGVNVSPGHVRDI 316
Query: 82 IQTHPNVLEAYAYGVPDERM 101
++ +P V A A + R+
Sbjct: 317 LERNPRV-RAAAVRLDGRRL 335
>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase;
Provisional.
Length = 1140
Score = 29.9 bits (68), Expect = 2.6
Identities = 24/97 (24%), Positives = 35/97 (36%), Gaps = 10/97 (10%)
Query: 52 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT-HPNVLEAYAYGVPDERMGEEVGISIK 110
E+G+ + GR K GE I +EE P+ L A +PD R GE + I
Sbjct: 1022 EEGFITIKGRAKRFAKIAGEMISLAAVEELAAELWPDALHAAVS-IPDARKGERI---IL 1077
Query: 111 LKENAKLNADDIRTFCKGKVKRKISCIFI--IIVRIS 145
L + K S + + I+ I
Sbjct: 1078 LTTASDATRAAFLAHAK---AAGASELMVPAEIITID 1111
Score = 29.9 bits (68), Expect = 2.8
Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT-HPNVLEAYAYGVPDERMGEEVGISIK 342
E+G+ + GR K GE I +EE P+ L A +PD R GE + I
Sbjct: 1022 EEGFITIKGRAKRFAKIAGEMISLAAVEELAAELWPDALHAAVS-IPDARKGERI---IL 1077
Query: 343 LKENAKLNADDIRTFCKGK 361
L + K
Sbjct: 1078 LTTASDATRAAFLAHAKAA 1096
>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 455
Score = 29.7 bits (67), Expect = 2.9
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 52 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNV 88
+ G GR + G ++ +E+ HP V
Sbjct: 342 DQGRLWFCGRKAHRVETAGGTLFTVPVEQVFNRHPGV 378
Score = 29.7 bits (67), Expect = 2.9
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNV 320
+ G GR + G ++ +E+ HP V
Sbjct: 342 DQGRLWFCGRKAHRVETAGGTLFTVPVEQVFNRHPGV 378
>gnl|CDD|237058 PRK12324, PRK12324, phosphoribose diphosphate:decaprenyl-phosphate
phosphoribosyltransferase; Provisional.
Length = 295
Score = 29.4 bits (67), Expect = 3.1
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 225 LFLELVLYIVNSVLYNFKWINQV 247
L L L++Y+V ++ Y+FK +Q
Sbjct: 117 LALVLLVYLVLNLAYSFKLKHQP 139
>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP),
including FATP4 and FATP1, and similar proteins. Fatty
acid transport protein (FATP) transports long-chain or
very-long-chain fatty acids across the plasma membrane.
At least five copies of FATPs are identified in
mammalian cells. This family includes FATP4, FATP1, and
homologous proteins. Each FATP has unique patterns of
tissue distribution. FATP4 is mainly expressed in the
brain, testis, colon and kidney. FATPs also have fatty
acid CoA synthetase activity, thus playing dual roles as
fatty acid transporters and its activation enzymes.
FATPs are the key players in the trafficking of
exogenous fatty acids into the cell and in intracellular
fatty acid homeostasis.
Length = 474
Score = 28.9 bits (65), Expect = 5.0
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 13/88 (14%)
Query: 10 ANQHSSRQKKAIH-FRHFDSFLLFVELCLLLFPFLSRDQFVLREDGYGQVVGRIKDMIIR 68
N+ ++ +K A F+ DS FLS D V+ E GY R D
Sbjct: 330 VNEGATNKKIARDVFKKGDSA------------FLSGDVLVMDELGYLYFKDRTGDTFRW 377
Query: 69 GGENIYPKEIEEFIQTHPNVLEAYAYGV 96
GEN+ E+E + + + YGV
Sbjct: 378 KGENVSTTEVEGILSNVLGLEDVVVYGV 405
>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional.
Length = 1296
Score = 28.9 bits (65), Expect = 5.7
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 51 REDGYGQVVGRIKDMI-IRGGENIYPKEIEEFIQTHPNVLEAYA 93
+DG + +GR D + IRG + I EI+ +Q P+V +A
Sbjct: 848 LDDGAVEYLGRSDDQLKIRG-QRIELGEIDRAMQALPDVEQAVT 890
Score = 28.9 bits (65), Expect = 5.7
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 283 REDGYGQVVGRIKDMI-IRGGENIYPKEIEEFIQTHPNVLEAYA 325
+DG + +GR D + IRG + I EI+ +Q P+V +A
Sbjct: 848 LDDGAVEYLGRSDDQLKIRG-QRIELGEIDRAMQALPDVEQAVT 890
>gnl|CDD|202711 pfam03637, Mob1_phocein, Mob1/phocein family. Mob1 is an essential
Saccharomyces cerevisiae protein, identified from a
two-hybrid screen, that binds Mps1p, a protein kinase
essential for spindle pole body duplication and mitotic
checkpoint regulation. Mob1 contains no known structural
motifs; however MOB1 is a member of a conserved gene
family and shares sequence similarity with a
nonessential yeast gene, MOB2. Mob1 is a phosphoprotein
in vivo and a substrate for the Mps1p kinase in vitro.
Conditional alleles of MOB1 cause a late nuclear
division arrest at restrictive temperature. This family
also includes phocein, a rat protein that by yeast two
hybrid interacts with striatin.
Length = 171
Score = 28.1 bits (63), Expect = 5.9
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 188 QSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLY 232
+ FP G F +V+ R +++ HI+ H F E+V
Sbjct: 95 EKIFPTKVGVPFPKNFKLIVKKILRRLFRIFAHIYFHHFDEIVEL 139
>gnl|CDD|178125 PLN02509, PLN02509, cystathionine beta-lyase.
Length = 464
Score = 28.5 bits (63), Expect = 6.2
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 62 IKDMIIR---GGENIYPKEIEEFIQTHPNVLEAYAYGVPD 98
IK M +R EN ++I ++ +HP V + Y G+PD
Sbjct: 325 IKTMALRIEKQQEN--ARKIAMYLSSHPRVKKVYYAGLPD 362
Score = 28.5 bits (63), Expect = 6.2
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 294 IKDMIIR---GGENIYPKEIEEFIQTHPNVLEAYAYGVPD 330
IK M +R EN ++I ++ +HP V + Y G+PD
Sbjct: 325 IKTMALRIEKQQEN--ARKIAMYLSSHPRVKKVYYAGLPD 362
>gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional.
Length = 728
Score = 28.5 bits (64), Expect = 6.7
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 46 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT-HPNVLEAYAYGVPDERMG-E 103
D F GY + GR D + GG + EIE +VLE A GVP G E
Sbjct: 595 DIFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPE 654
Query: 104 EVGISIKLK 112
++ I+ LK
Sbjct: 655 QLVIAAVLK 663
Score = 28.1 bits (63), Expect = 7.9
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 285 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT-HPNVLEAYAYGVPDERMG-EEVGISIK 342
GY + GR D + GG + EIE +VLE A GVP G E++ I+
Sbjct: 602 GGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIAAV 661
Query: 343 LK 344
LK
Sbjct: 662 LK 663
>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain. This
model represents a domain responsible for the specific
recognition of amino acids and activation as adenylyl
amino acids. The reaction catalyzed is aa + ATP ->
aa-AMP + PPi. These domains are usually found as
components of multi-domain non-ribosomal peptide
synthetases and are usually called "A-domains" in that
context (for a review, see ). A-domains are almost
invariably followed by "T-domains" (thiolation domains,
pfam00550) to which the amino acid adenylate is
transferred as a thiol-ester to a bound pantetheine
cofactor with the release of AMP (these are also called
peptide carrier proteins, or PCPs. When the A-domain
does not represent the first module (corresponding to
the first amino acid in the product molecule) it is
usually preceded by a "C-domain" (condensation domain,
pfam00668) which catalyzes the ligation of two amino
acid thiol-esters from neighboring modules. This domain
is a subset of the AMP-binding domain found in Pfam
(pfam00501) which also hits substrate--CoA ligases and
luciferases. Sequences scoring in between trusted and
noise for this model may be ambiguous as to whether they
activate amino acids or other molecules lacking an alpha
amino group.
Length = 409
Score = 28.4 bits (64), Expect = 7.0
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 46 DQFVLREDGYGQVVGRIKDMI-IRGGENIYPKEIEEFIQTHPNVLEA 91
D DG + +GRI D + IRG I EIE + HP V EA
Sbjct: 362 DLVRYLPDGNLEFLGRIDDQVKIRG-YRIELGEIEAALLRHPGVREA 407
>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase,
AACS). AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms. AACS is widely distributed in bacteria,
archaea and eukaryotes. In bacteria, AACS is known to
exhibit an important role in the metabolism of
poly-b-hydroxybutyrate, an intracellular reserve of
organic carbon and chemical energy by some
microorganisms. In mammals, AACS influences the rate of
ketone body utilization for the formation of
physiologically important fatty acids and cholesterol.
Length = 616
Score = 28.0 bits (63), Expect = 8.8
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 68 RGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCK 127
GG I EI ++ P V ++ G + E + + +KL+E L+ D + +
Sbjct: 499 PGGVRIGTAEIYRVVEKIPEVEDSLVVGQEVDDGDERMPLFVKLREGVTLD-DALVKRIR 557
Query: 128 GKVKRKIS 135
++ +S
Sbjct: 558 SAIRAALS 565
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.142 0.436
Gapped
Lambda K H
0.267 0.0708 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,166,313
Number of extensions: 1932119
Number of successful extensions: 2821
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2786
Number of HSP's successfully gapped: 300
Length of query: 365
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 267
Effective length of database: 6,590,910
Effective search space: 1759772970
Effective search space used: 1759772970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (26.9 bits)