RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13046
(365 letters)
>3o83_A Peptide arylation enzyme; ligase, adenylation of
2,3-dihydroxybenzoate and transfer to pantetheine
cofactor of BASF; HET: IXN; 1.90A {Acinetobacter
baumannii} PDB: 3o82_A* 3o84_A*
Length = 544
Score = 133 bits (338), Expect = 5e-35
Identities = 29/85 (34%), Positives = 42/85 (49%)
Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
DG +VVGRIKD I RGGE I +EIE+ I HP V+ A + DE+ GE+
Sbjct: 425 QRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAF 484
Query: 341 IKLKENAKLNADDIRTFCKGKVSKF 365
I + R + ++++
Sbjct: 485 IVSRNPELKAVVLRRHLMELGIAQY 509
Score = 130 bits (329), Expect = 7e-34
Identities = 29/82 (35%), Positives = 39/82 (47%)
Query: 49 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 108
DG +VVGRIKD I RGGE I +EIE+ I HP V+ A + DE+ GE+
Sbjct: 425 QRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAF 484
Query: 109 IKLKENAKLNADDIRTFCKGKV 130
I + R + +
Sbjct: 485 IVSRNPELKAVVLRRHLMELGI 506
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide
synthetase, antibiotic biosynthesis, siderophore
formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP:
e.23.1.1 PDB: 1md9_A* 1mdf_A
Length = 539
Score = 133 bits (336), Expect = 8e-35
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 49 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 108
L DGY V GR KD I RGGE + +E+E + HP V +A +PD+ +GE +
Sbjct: 416 RLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVF 475
Query: 109 IKLKENAKLNADDIRTFCKGK 129
I ++ A A +++ F + +
Sbjct: 476 IIPRDEA-PKAAELKAFLRER 495
Score = 133 bits (336), Expect = 8e-35
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
L DGY V GR KD I RGGE + +E+E + HP V +A +PD+ +GE +
Sbjct: 416 RLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVF 475
Query: 341 IKLKENAKLNADDIRTFCKGK 361
I ++ A A +++ F + +
Sbjct: 476 IIPRDEA-PKAAELKAFLRER 495
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase;
HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB:
4fut_A*
Length = 503
Score = 131 bits (333), Expect = 1e-34
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
E GY ++GR KD++I GG N+YPKEIE I P V+E+ GVP GE V +
Sbjct: 388 ERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVR 447
Query: 344 KENAKLNADDIRTFCKGKVSKF 365
+ A ++ + G+++KF
Sbjct: 448 DKGATIDEAQVLHGLDGQLAKF 469
Score = 128 bits (325), Expect = 2e-33
Identities = 29/78 (37%), Positives = 42/78 (53%)
Query: 52 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
E GY ++GR KD++I GG N+YPKEIE I P V+E+ GVP GE V +
Sbjct: 388 ERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVR 447
Query: 112 KENAKLNADDIRTFCKGK 129
+ A ++ + G+
Sbjct: 448 DKGATIDEAQVLHGLDGQ 465
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase
domain alternation confo change; 2.00A {Alcaligenes SP}
SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X*
2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Length = 504
Score = 130 bits (330), Expect = 4e-34
Identities = 32/80 (40%), Positives = 47/80 (58%)
Query: 49 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 108
V +G +++GR+ DMII GGENI+P EIE + T P V E G+ D+R G+ V
Sbjct: 388 VWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTAC 447
Query: 109 IKLKENAKLNADDIRTFCKG 128
+ + L+AD + TFC+
Sbjct: 448 VVPRLGETLSADALDTFCRS 467
Score = 130 bits (330), Expect = 4e-34
Identities = 32/80 (40%), Positives = 47/80 (58%)
Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
V +G +++GR+ DMII GGENI+P EIE + T P V E G+ D+R G+ V
Sbjct: 388 VWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTAC 447
Query: 341 IKLKENAKLNADDIRTFCKG 360
+ + L+AD + TFC+
Sbjct: 448 VVPRLGETLSADALDTFCRS 467
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate
synthetase, isochroismatase...; adenylate-forming
enzymes, ANL superfamily; HET: SVS PNS; 3.10A
{Escherichia coli}
Length = 617
Score = 129 bits (326), Expect = 3e-33
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 49 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 108
+ +GY V GR KD I RGGE I +EIE + HP V+ A + DE MGE+
Sbjct: 420 SIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAY 479
Query: 109 IKLKENAKLNADDIRTFCKGK 129
+ +KE + A +R F + +
Sbjct: 480 LVVKEPLR--AVQVRRFLREQ 498
Score = 129 bits (326), Expect = 3e-33
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
+ +GY V GR KD I RGGE I +EIE + HP V+ A + DE MGE+
Sbjct: 420 SIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAY 479
Query: 341 IKLKENAKLNADDIRTFCKGK 361
+ +KE + A +R F + +
Sbjct: 480 LVVKEPLR--AVQVRRFLREQ 498
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein
synthetase, PSI-2, protein structure initiative; 2.30A
{Staphylococcus aureus subsp}
Length = 501
Score = 119 bits (301), Expect = 3e-30
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
+GY + R KD+II GGENIYP +IE + P + +A G PD+ G+ +
Sbjct: 387 HEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVS 446
Query: 344 KENAKLNADDIRTFCKGKVSKF 365
+ + ++ + + ++K+
Sbjct: 447 ESD--ISKAQLIAYLSKHLAKY 466
Score = 117 bits (295), Expect = 3e-29
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 52 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
+GY + R KD+II GGENIYP +IE + P + +A G PD+ G+ +
Sbjct: 387 HEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVS 446
Query: 112 KENAKLNADDIRTFCKGK 129
+ + ++ + +
Sbjct: 447 ESD--ISKAQLIAYLSKH 462
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics,
PSI-2, protein S initiative, fatty acid synthesis; HET:
GOL; 2.00A {Rhodopseudomonas palustris}
Length = 509
Score = 116 bits (294), Expect = 3e-29
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 284 EDGYGQVVGRI--KDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341
DGY GR K++I GGEN+YP E+E ++ HP + +A GVPD + E +
Sbjct: 387 ADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVC 446
Query: 342 KLKENAKLNADDIRTFCKGKVSKF 365
K + AD + F ++++
Sbjct: 447 VCKPGESIAADALAEFVASLIARY 470
Score = 114 bits (288), Expect = 2e-28
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 42 FLSRDQFVLREDGYGQVVGRI--KDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDE 99
+ D DGY GR K++I GGEN+YP E+E ++ HP + +A GVPD
Sbjct: 377 HHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDP 436
Query: 100 RMGEEVGISIKLKENAKLNADDIRTFCKGK 129
+ E + K + AD + F
Sbjct: 437 QWSEAIKAVCVCKPGESIAADALAEFVASL 466
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel
adenylate-forming EN fold; HET: MCA AMP; 1.43A
{Streptomyces coelicolor} PDB: 3nyr_A*
Length = 505
Score = 116 bits (293), Expect = 5e-29
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Query: 281 VLREDGYGQVVGR-IKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGI 339
V DGY ++VGR D+I GG I EIE + HP V EA G PD +GE +
Sbjct: 391 VRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVA 450
Query: 340 SIKLKE-NAKLNADDIRTFCKGKVSKF 365
I + A + +++
Sbjct: 451 WIVPADPAAPPALGTLADHVAARLAPH 477
Score = 113 bits (284), Expect = 8e-28
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 46 DQFVLREDGYGQVVGR-IKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 104
D V DGY ++VGR D+I GG I EIE + HP V EA G PD +GE
Sbjct: 388 DMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGER 447
Query: 105 VGISIKLKE-NAKLNADDIRTFCKGK 129
+ I + A + +
Sbjct: 448 IVAWIVPADPAAPPALGTLADHVAAR 473
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase);
ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis}
PDB: 3t5c_A 3t5b_A
Length = 517
Score = 114 bits (289), Expect = 2e-28
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
++GY + R+KDMII GGEN+YP EIE I P V E G+PDE+ GE +
Sbjct: 402 DEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVA 461
Query: 344 KENAKLNADDIRTFCKGKVSKF 365
+ +++ I +C +++++
Sbjct: 462 DQ-NEVSEQQIVEYCGTRLARY 482
Score = 113 bits (284), Expect = 8e-28
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 42 FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
F + D + ++GY + R+KDMII GGEN+YP EIE I P V E G+PDE+
Sbjct: 392 FRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKW 451
Query: 102 GEEVGISIKLKENAKLNADDIRTFCKGK 129
GE + + +++ I +C +
Sbjct: 452 GEIAAAIVVADQ-NEVSEQQIVEYCGTR 478
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure
initiative, PSI-II, NYSGXRC, 11193J, structural
genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Length = 549
Score = 106 bits (266), Expect = 2e-25
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
E+G+ R+K++I G I P E+E + H V++ G PDE GE I L
Sbjct: 428 EEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVL 487
Query: 344 KEN--AKLNADDIRTFCKGKVSKF 365
K K++ +DI + + ++S +
Sbjct: 488 KPEYRGKVDEEDIIEWVRERISGY 511
Score = 104 bits (262), Expect = 8e-25
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 52 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
E+G+ R+K++I G I P E+E + H V++ G PDE GE I L
Sbjct: 428 EEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVL 487
Query: 112 KEN--AKLNADDIRTFCKGKV 130
K K++ +DI + + ++
Sbjct: 488 KPEYRGKVDEEDIIEWVRERI 508
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA
ligase; 1.84A {Burkholderia xenovorans}
Length = 529
Score = 101 bits (255), Expect = 5e-24
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 9/101 (8%)
Query: 42 FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
S D++ +G GR DM+ G+ + P E+E + H VLEA GV
Sbjct: 408 IRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGG- 466
Query: 102 GEEVGISIKLKENAK---LNADDIRTFCKG-----KVKRKI 134
+ + LK + A++++ F K K R I
Sbjct: 467 LVKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDI 507
Score = 98.0 bits (245), Expect = 1e-22
Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Query: 280 FVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGI 339
+ +G GR DM+ G+ + P E+E + H VLEA GV +
Sbjct: 414 YCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGG-LVKTRA 472
Query: 340 SIKLKENAK---LNADDIRTFCKGKVSKF 365
+ LK + A++++ F K +++
Sbjct: 473 FVVLKREFAPSEILAEELKAFVKDRLAPH 501
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL
EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Length = 536
Score = 100 bits (251), Expect = 2e-23
Identities = 21/82 (25%), Positives = 40/82 (48%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
+D +V R+K++I G + P E+E + HP + +A G+ DE GE +
Sbjct: 423 DDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVK 482
Query: 344 KENAKLNADDIRTFCKGKVSKF 365
E ++ D+I+ + +V +
Sbjct: 483 SEKSQATEDEIKQYISKQVIFY 504
Score = 98.0 bits (245), Expect = 1e-22
Identities = 21/79 (26%), Positives = 39/79 (49%)
Query: 52 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
+D +V R+K++I G + P E+E + HP + +A G+ DE GE +
Sbjct: 423 DDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVK 482
Query: 112 KENAKLNADDIRTFCKGKV 130
E ++ D+I+ + +V
Sbjct: 483 SEKSQATEDEIKQYISKQV 501
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel,
alpha+beta, riken structural genomics/proteomics
initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata}
PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Length = 548
Score = 100 bits (251), Expect = 2e-23
Identities = 22/82 (26%), Positives = 40/82 (48%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
E+ + +V R+K +I G + P E+E + HP++ +A GVPD GE G + L
Sbjct: 430 EEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVL 489
Query: 344 KENAKLNADDIRTFCKGKVSKF 365
+ + ++ + +VS
Sbjct: 490 ESGKNMTEKEVMDYVASQVSNA 511
Score = 98.1 bits (245), Expect = 1e-22
Identities = 21/79 (26%), Positives = 39/79 (49%)
Query: 52 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
E+ + +V R+K +I G + P E+E + HP++ +A GVPD GE G + L
Sbjct: 430 EEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVL 489
Query: 112 KENAKLNADDIRTFCKGKV 130
+ + ++ + +V
Sbjct: 490 ESGKNMTEKEVMDYVASQV 508
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase,
photoprotein, luminescence, aspulvinone, natural product
extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A
1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A
Length = 550
Score = 99.2 bits (248), Expect = 5e-23
Identities = 22/82 (26%), Positives = 40/82 (48%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
ED + +V R+K +I G + P E+E + HPN+ +A G+PD+ GE + L
Sbjct: 428 EDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVL 487
Query: 344 KENAKLNADDIRTFCKGKVSKF 365
+ + +I + +V+
Sbjct: 488 EHGKTMTEKEIVDYVASQVTTA 509
Score = 96.5 bits (241), Expect = 4e-22
Identities = 22/79 (27%), Positives = 39/79 (49%)
Query: 52 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
ED + +V R+K +I G + P E+E + HPN+ +A G+PD+ GE + L
Sbjct: 428 EDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVL 487
Query: 112 KENAKLNADDIRTFCKGKV 130
+ + +I + +V
Sbjct: 488 EHGKTMTEKEIVDYVASQV 506
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase;
transferase; 3.10A {Arabidospis thaliana}
Length = 979
Score = 87.4 bits (217), Expect = 7e-19
Identities = 19/82 (23%), Positives = 42/82 (51%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
+D +V R+K++I G + P E+E + HP++ + + +E GE +
Sbjct: 470 DDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVK 529
Query: 344 KENAKLNADDIRTFCKGKVSKF 365
++++L+ DD++ F +V +
Sbjct: 530 SKDSELSEDDVKQFVSKQVVFY 551
Score = 85.1 bits (211), Expect = 4e-18
Identities = 19/79 (24%), Positives = 41/79 (51%)
Query: 52 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
+D +V R+K++I G + P E+E + HP++ + + +E GE +
Sbjct: 470 DDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVK 529
Query: 112 KENAKLNADDIRTFCKGKV 130
++++L+ DD++ F +V
Sbjct: 530 SKDSELSEDDVKQFVSKQV 548
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics,
riken structural genomics/proteomics initiative, RSGI;
HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1
PDB: 1ult_A* 1v26_A*
Length = 541
Score = 86.4 bits (215), Expect = 8e-19
Identities = 22/85 (25%), Positives = 37/85 (43%)
Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
V E+GY ++ R+KD+I GGE I ++E + HP V EA +P + E
Sbjct: 421 VWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAV 480
Query: 341 IKLKENAKLNADDIRTFCKGKVSKF 365
+ + + K +K+
Sbjct: 481 VVPRGEKPTPEELNEHLLKAGFAKW 505
Score = 82.2 bits (204), Expect = 2e-17
Identities = 21/82 (25%), Positives = 34/82 (41%)
Query: 49 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 108
V E+GY ++ R+KD+I GGE I ++E + HP V EA +P + E
Sbjct: 421 VWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAV 480
Query: 109 IKLKENAKLNADDIRTFCKGKV 130
+ + + K
Sbjct: 481 VVPRGEKPTPEELNEHLLKAGF 502
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme
family,, structural genomics, PSI-2, protein structure
initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB:
3pbk_A*
Length = 576
Score = 62.7 bits (153), Expect = 6e-11
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 290 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY--AYGVPDERMGEEVGISIKLKENA 347
V GRIKD+II G NI+P++IE + P + A+ E+ + + I+ + +
Sbjct: 456 VTGRIKDLIIIRGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQEK----IILQIQCRISD 511
Query: 348 KLNADDIRTFCKGKVSK 364
+ + ++
Sbjct: 512 EERRGQLIHALAARIQS 528
Score = 62.3 bits (152), Expect = 8e-11
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 10/89 (11%)
Query: 58 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY--AYGVPDERMGEEVGISIKLKENA 115
V GRIKD+II G NI+P++IE + P + A+ E+ + + I+ + +
Sbjct: 456 VTGRIKDLIIIRGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQEK----IILQIQCRISD 511
Query: 116 KLNADDIRTFCKGKVKRKISCIFIIIVRI 144
+ + + +I F + I
Sbjct: 512 EERRGQLIH----ALAARIQSEFGVTAAI 536
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain
acyl-COA synthetase, xenobiotic/medium-chain FA COA
ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A
3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Length = 570
Score = 60.3 bits (147), Expect = 3e-10
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 42 FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
+L D+ + EDGY Q +GR D+I G I P E+E + HP V+E PD
Sbjct: 435 WLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVR 494
Query: 102 GEEVGISIKLKENAKLN-----ADDIRTFCK 127
GE V + L + +++ K
Sbjct: 495 GEVVKAFVVLASQFLSHDPEQLTKELQQHVK 525
Score = 59.2 bits (144), Expect = 7e-10
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
EDGY Q +GR D+I G I P E+E + HP V+E PD GE V + L
Sbjct: 445 EDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVL 504
Query: 344 KENAKLN-----ADDIRTFCKGKVS 363
+ +++ K +
Sbjct: 505 ASQFLSHDPEQLTKELQQHVKSVTA 529
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl
adenylate, structural genom 2, protein structure
initiative; HET: 1ZZ; 1.85A {Legionella pneumophila
subsp} PDB: 3lnv_A*
Length = 590
Score = 53.5 bits (129), Expect = 6e-08
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 58 VVGRIKDMIIRGGENIYPKEIEEFIQ-THPNVLEAY--AYGVPDERMGEEV 105
V GRIKD+II G+N YP++IE + + + + A+ + +E +
Sbjct: 453 VTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEHEYKLT 503
Score = 53.5 bits (129), Expect = 6e-08
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 290 VVGRIKDMIIRGGENIYPKEIEEFIQ-THPNVLEAY--AYGVPDERMGEEV 337
V GRIKD+II G+N YP++IE + + + + A+ + +E +
Sbjct: 453 VTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEHEYKLT 503
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase,
ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina
acetivorans}
Length = 580
Score = 53.0 bits (128), Expect = 7e-08
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 52 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
EDGY VGR D+I G + P E+E + HP VLE GVPD G+ + +I L
Sbjct: 464 EDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVL 523
Query: 112 KENAKLN---ADDIRTFCK 127
++ + ++++ K
Sbjct: 524 TKDYTPSDSLKNELQDHVK 542
Score = 53.0 bits (128), Expect = 7e-08
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
EDGY VGR D+I G + P E+E + HP VLE GVPD G+ + +I L
Sbjct: 464 EDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVL 523
Query: 344 KENAKLN---ADDIRTFCK 359
++ + ++++ K
Sbjct: 524 TKDYTPSDSLKNELQDHVK 542
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.0 bits (124), Expect = 2e-07
Identities = 63/413 (15%), Positives = 115/413 (27%), Gaps = 169/413 (40%)
Query: 60 GRIKDMIIRGG---------E-----NIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 105
G + + I GG E Y + + I+ L D
Sbjct: 152 GNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ 211
Query: 106 GISIK--LKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLK----------- 152
G++I L+ + D ISC I +++++ + K
Sbjct: 212 GLNILEWLENPSNTPDKDYLLSI------PISCPLIGVIQLAHYVVTAKLLGFTPGELRS 265
Query: 153 YRSASTVWYSNVL---LFSQV-----FLVVIDPSLTIHTVWPG---QSYFPCCCGKLRIH 201
Y +T ++ ++ F V + ++T+ + G +P +
Sbjct: 266 YLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV-LFFIGVRCYEAYPNTS----LP 320
Query: 202 PFLEVVQSFE---------------CRRYQVVLHIFE---HLFLELVLYI--VNS----V 237
P +++ + QV ++ + HL + I VN V
Sbjct: 321 P--SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV 378
Query: 238 LYNFKWINQVSSQTMAMKSKRGLPA----------RVKAPD-----RKKCSQR-PRY--Q 279
VS G P + KAP R S+R ++ +
Sbjct: 379 ---------VS----------GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNR 419
Query: 280 FV---------------------------------LR------EDGY------GQVVGRI 294
F+ ++ DG G + RI
Sbjct: 420 FLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERI 479
Query: 295 KDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA 347
D IIR + + +F TH +L+ +G P G G+ + N
Sbjct: 480 VDCIIR--LPVKWETTTQFKATH--ILD---FG-P----GGASGLGVLTHRNK 520
Score = 37.3 bits (86), Expect = 0.008
Identities = 27/169 (15%), Positives = 59/169 (34%), Gaps = 45/169 (26%)
Query: 203 FL----EVVQSFECRRYQVVLHI----FEHLFL---ELVLYIVNSVLYNFKWINQVSSQT 251
FL +V+ + ++ VL++ FE+ +L + ++++ + T
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND-----IHALAAKL----LQENDT 114
Query: 252 MAMKSKRGLPARVKAPDRKKCSQRPRYQF----VLREDGYGQVVGRIKDMIIRGG----- 302
+K+K + + A + ++RP + + R G G ++ + I GG
Sbjct: 115 TLVKTKELIKNYITA---RIMAKRPFDKKSNSALFRAVGEGNA--QL--VAIFGGQGNTD 167
Query: 303 ----E-----NIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIK 342
E Y + + I+ L D G++I
Sbjct: 168 DYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL 216
Score = 35.4 bits (81), Expect = 0.032
Identities = 50/333 (15%), Positives = 98/333 (29%), Gaps = 115/333 (34%)
Query: 57 QVVGRIKDMIIRGGENIYPKEIEEFIQTHP---NVLEAYAYGVPDERMGEEVGISIK--L 111
Q G M G ++Y +T +V A D + G SI +
Sbjct: 1627 QEQG----M----GMDLY--------KTSKAAQDVWNR-A----DNHFKDTYGFSILDIV 1665
Query: 112 KENAKLNADDIRTFCKGKVKRKISCIFIIIV-------RISCECIL--LKYRSASTVWYS 162
N ++ G+ ++I + ++ ++ E I + S S + S
Sbjct: 1666 INNPV----NLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS 1721
Query: 163 -NVLL----FSQVFLVVIDPSLTIHTVW------PGQSYFPCCCGKLRIHPFL-EVVQSF 210
LL F+Q L ++ P + F G H L E
Sbjct: 1722 EKGLLSATQFTQPALTLM--EKAAFEDLKSKGLIPADATF---AG----HS-LGE----- 1766
Query: 211 ECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQVSSQTMAMKSKRGLPARVKAPDRK 270
Y + + + + +E ++ +V RG+ +V P
Sbjct: 1767 ----YAALASLADVMSIESLVEVV---------------------FYRGMTMQVAVP--- 1798
Query: 271 KCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPD 330
+ L YG + + + +E + ++E Y V +
Sbjct: 1799 --------RDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVEN 1850
Query: 331 ERM---GEEVGI--------SIKLK--ENAKLN 350
++ G+ + IKL+ + +L
Sbjct: 1851 QQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQ 1883
Score = 35.0 bits (80), Expect = 0.047
Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 20/108 (18%)
Query: 13 HSSRQKKAIHFRHFDSFLLFVELCL----LLFP-FLSRDQFVLREDGYGQVVGRIKDMII 67
HS A + D L+ + + P + + D LR G + RI D II
Sbjct: 428 HSHLLVPASDLINKD--LVKNNVSFNAKDIQIPVYDTFDGSDLRVLS-GSISERIVDCII 484
Query: 68 RGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA 115
R + + +F TH +L+ +G P G G+ + N
Sbjct: 485 R--LPVKWETTTQFKATH--ILD---FG-P----GGASGLGVLTHRNK 520
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.6 bits (107), Expect = 2e-05
Identities = 43/286 (15%), Positives = 92/286 (32%), Gaps = 73/286 (25%)
Query: 78 IEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCI 137
I E I+ + + + V +++ + S+ L + R K+ ++S +
Sbjct: 333 IAESIRDGLATWDNWKH-VNCDKLTTIIESSLN-----VLEPAEYR-----KMFDRLS-V 380
Query: 138 FIIIVRISCECILLKYRSASTVW----YSNVLLFSQVF----LVVIDP---SLTIHTVWP 186
F I LL S +W S+V++ LV P +++I +++
Sbjct: 381 FPPSAHIPTI--LL-----SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY- 432
Query: 187 GQSYFPCCCGKLRIHPFLEVVQSFECRR----------------YQVVLHIFEHLF---L 227
+ +H +V + + Y HI HL
Sbjct: 433 -LELKVKLENEYALHR--SIVDHYNIPKTFDSDDLIPPYLDQYFYS---HIGHHLKNIEH 486
Query: 228 ELVLYIVNSVLYNFKWINQVSSQTMAMKSKR-GLPARVKAPDRKKCSQRPRY-QFVLRED 285
+ + V +F+++ Q K + Q Y ++ D
Sbjct: 487 PERMTLFRMVFLDFRFLEQ--------KIRHDSTAWNASGSILNTLQQLKFYKPYICDND 538
Query: 286 G-YGQVVGRIKDMIIRGGENIYPKEIEEFIQ---THPN---VLEAY 324
Y ++V I D + + EN+ + + ++ + EA+
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAH 584
Score = 42.1 bits (98), Expect = 3e-04
Identities = 38/259 (14%), Positives = 69/259 (26%), Gaps = 91/259 (35%)
Query: 113 ENAKLNADDIRTFCKGKVKRKISCIFIIIVR------------ISCECILLKYRSASTVW 160
N KL I+ + +K K ++++ +SC+ ILL R
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK-ILLTTRFKQVTD 279
Query: 161 YSNVLLFSQVFLVVIDPSLTIHTVWPGQS------YFPCCCGKLR-----IHPFL----- 204
+ + + + L +LT P + Y C L +P
Sbjct: 280 FLSAATTTHISLDHHSMTLT-----PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334
Query: 205 EVVQSFECR--RYQVVL-----HIFE------------HLFLELVLY-----IVNSVLYN 240
E ++ ++ V I E +F L ++ I +L
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 241 FKWINQVSSQTMAM------KS---KRGLPARVKAPD-----RKKCSQRP--------RY 278
W + + S M + S K+ + + P + K Y
Sbjct: 395 I-WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453
Query: 279 QF----------VLREDGY 287
D Y
Sbjct: 454 NIPKTFDSDDLIPPYLDQY 472
Score = 36.0 bits (82), Expect = 0.020
Identities = 61/401 (15%), Positives = 118/401 (29%), Gaps = 96/401 (23%)
Query: 11 NQHSSRQKKAIHFRHF-DSF---LLFVELCLLLFPFLSRDQF--VLREDGYGQVVGRIKD 64
+H + K + F D+F ++ + LS+++ ++ R+
Sbjct: 12 GEHQYQYKDILS--VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 65 MIIRGGENIYPKEIEEFIQT-HPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIR 123
++ E + K +EE ++ + ++ M + I + + N D +
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE---QRDRLYN--DNQ 124
Query: 124 TFCKGKVKRKISCIFIIIVRISCECILLKYRSASTV------------------------ 159
F K V R + +R + LL+ R A V
Sbjct: 125 VFAKYNVSRLQP---YLKLRQA----LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 160 --------WYS--------NVLLFSQVFLVVIDPSLTIHTVWPGQSYFPCCCGKLRIHPF 203
W + VL Q L IDP+ T S KLRIH
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR---SDHSSNI----KLRIHSI 230
Query: 204 LEVVQS-FECRRYQVVLHIFEHLFLELVLYIVNS--VLYNFKWINQVSSQTMAMKSKRGL 260
++ + + Y+ L LVL V + F +S + + + +
Sbjct: 231 QAELRRLLKSKPYENCL---------LVLLNVQNAKAWNAFN----LSCKILLTTRFKQV 277
Query: 261 PARVKAPDRKKCSQRPRYQ-FVLRE--DGYGQVVGRIKDMIIRGGENIYP---KEIEEFI 314
+ A S E + + + R P I E I
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 315 QTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIR 355
+ + + + V +++ + S+ L + R
Sbjct: 338 RDGLATWDNWKH-VNCDKLTTIIESSLN-----VLEPAEYR 372
Score = 31.7 bits (71), Expect = 0.47
Identities = 24/152 (15%), Positives = 49/152 (32%), Gaps = 36/152 (23%)
Query: 214 RYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQVSSQTMAMKSKRGLPARVKAPDRKKCS 273
+Y+ +L +FE F++ NF V ++ SK + + + D
Sbjct: 17 QYKDILSVFEDAFVD-----------NFD-CKDVQDMPKSILSKEEIDHIIMSKDAV--- 61
Query: 274 QRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT-HPNVLEAYAYGVPDER 332
F ++ E + K +EE ++ + ++
Sbjct: 62 SGTLRLF---------------WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106
Query: 333 MGEEVGISIKLKENAKLNADDIRTFCKGKVSK 364
M + I + + N D + F K VS+
Sbjct: 107 MMTRMYIE---QRDRLYN--DNQVFAKYNVSR 133
Score = 29.1 bits (64), Expect = 3.0
Identities = 16/106 (15%), Positives = 31/106 (29%), Gaps = 36/106 (33%)
Query: 22 HF---RHFDSFLLFVELCLLLFPFLS--------------------------RDQFVLRE 52
H H + LF + L F FL + +
Sbjct: 480 HLKNIEHPERMTLFRMV-FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND 538
Query: 53 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ---THPN---VLEAY 92
Y ++V I D + + EN+ + + ++ + EA+
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAH 584
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming,
thioester-forming, ligase; HET: COA PRX; 1.75A
{Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A*
2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Length = 652
Score = 45.3 bits (108), Expect = 2e-05
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 52 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
EDGY + GR+ D++ G + EIE + HP + EA G+P G+ + + L
Sbjct: 506 EDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTL 565
Query: 112 KENAKLNADDIRTFCKGKVKRKISCI 137
+ + ++ + V+++I +
Sbjct: 566 NHGEE-PSPELYAEVRNWVRKEIGPL 590
Score = 42.6 bits (101), Expect = 1e-04
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
EDGY + GR+ D++ G + EIE + HP + EA G+P G+ + + L
Sbjct: 506 EDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTL 565
Query: 344 KENAKLNADDIRTFCKGKVSK 364
+ + ++ + V K
Sbjct: 566 NHGEE-PSPELYAEVRNWVRK 585
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics,
PSI-2, protein structure initiative; 1.43A {Bacteroides
vulgatus atcc 8482} PDB: 3lax_A
Length = 109
Score = 41.9 bits (99), Expect = 2e-05
Identities = 14/74 (18%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 61 RIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAD 120
DMII G NI+P +IE + + Y + +E+ + ++L + +
Sbjct: 2 NADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYG 61
Query: 121 DIRTFCKGKVKRKI 134
++ + ++ R++
Sbjct: 62 RLQALTR-EITRQL 74
Score = 40.8 bits (96), Expect = 8e-05
Identities = 13/67 (19%), Positives = 28/67 (41%)
Query: 293 RIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAD 352
DMII G NI+P +IE + + Y + +E+ + ++L + +
Sbjct: 2 NADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYG 61
Query: 353 DIRTFCK 359
++ +
Sbjct: 62 RLQALTR 68
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation
pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia
cenocepacia} PDB: 2y4n_A*
Length = 437
Score = 43.4 bits (103), Expect = 8e-05
Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 56 GQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA 115
++ GR DM+I G N++P +IEE + + Y + E + + ++++
Sbjct: 326 EKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPET 385
Query: 116 KLNADDIRTFCKGKVKRKI 134
+ I+ + + I
Sbjct: 386 APDTAAIQVAKQ-ALAYDI 403
Score = 42.3 bits (100), Expect = 2e-04
Identities = 14/72 (19%), Positives = 32/72 (44%)
Query: 288 GQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA 347
++ GR DM+I G N++P +IEE + + Y + E + + ++++
Sbjct: 326 EKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPET 385
Query: 348 KLNADDIRTFCK 359
+ I+ +
Sbjct: 386 APDTAAIQVAKQ 397
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP
forming, related to firefly luciferase, ligase; HET:
AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Length = 663
Score = 43.3 bits (103), Expect = 9e-05
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 11/99 (11%)
Query: 45 RDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 104
+D +DGY ++GR+ D++ G + EIE I P V E G D+ G+
Sbjct: 513 KD-----KDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQA 567
Query: 105 VGISIKLKENAKLN------ADDIRTFCKGKVKRKISCI 137
V + LK + + DI+ V++ I
Sbjct: 568 VAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPF 606
Score = 41.8 bits (99), Expect = 3e-04
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 337
+DGY ++GR+ D++ G + EIE I P V E G D+ G+ V
Sbjct: 515 KDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAV 568
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE ADP COA; 2.20A {Bacteroides
thetaiotaomicron} PDB: 3s89_A*
Length = 436
Score = 42.3 bits (100), Expect = 2e-04
Identities = 16/77 (20%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 58 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 117
+ GR DM I G NI+P ++E+ + P + Y + +E+ + ++L + +
Sbjct: 326 IKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELSDLSTD 385
Query: 118 NADDIRTFCKGKVKRKI 134
N ++ + + R++
Sbjct: 386 NYIELEKIRR-DIIRQL 401
Score = 41.5 bits (98), Expect = 3e-04
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 290 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY 324
+ GR DM I G NI+P ++E+ + P + Y
Sbjct: 326 IKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNY 360
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation
pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Length = 443
Score = 42.3 bits (100), Expect = 2e-04
Identities = 19/98 (19%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 58 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 117
+ GR DM+I G N++P +IEE + P + + + + + + ++++L+ A
Sbjct: 330 ITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEA-- 387
Query: 118 NADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRS 155
A + + + R++ +V +S +L
Sbjct: 388 -AASVTDGERAALARELQHRIKTMVGVSSGVTVLAAGG 424
Score = 40.8 bits (96), Expect = 5e-04
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 290 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY 324
+ GR DM+I G N++P +IEE + P + +
Sbjct: 330 ITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQF 364
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide
synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE;
2.00A {Neotyphodium lolii}
Length = 562
Score = 30.7 bits (70), Expect = 0.82
Identities = 17/113 (15%), Positives = 29/113 (25%), Gaps = 46/113 (40%)
Query: 277 RYQFVLREDG---YGQVVGRI----KDMIIRG-----GENIYPKEIEEFIQTHPNVLEA- 323
R D + +GR K +RG GE + E I++
Sbjct: 413 RM----DADSSILF---LGRKDEQVK---VRGQRLELGE------VSEVIRSLSPTDIDV 456
Query: 324 ---------------YAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGK 361
++ G + EN K + +R C+
Sbjct: 457 VTLLLNHPGTSKQFLVSFVASSG--AAVRGELRWINENYKEINNSLRQACEQT 507
Score = 30.3 bits (69), Expect = 1.0
Identities = 16/107 (14%), Positives = 28/107 (26%), Gaps = 42/107 (39%)
Query: 51 REDG---YGQVVGRI----KDMIIRG-----GENIYPKEIEEFIQTHPNVLEA------- 91
D + +GR K +RG GE + E I++
Sbjct: 415 DADSSILF---LGRKDEQVK---VRGQRLELGE------VSEVIRSLSPTDIDVVTLLLN 462
Query: 92 ---------YAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGK 129
++ G + EN K + +R C+
Sbjct: 463 HPGTSKQFLVSFVASSG--AAVRGELRWINENYKEINNSLRQACEQT 507
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 29.0 bits (66), Expect = 2.4
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 75 PKEIEEFIQTHPNVLEAY 92
+E + + + P V+E Y
Sbjct: 237 GEEEIKNVLSDPKVVEIY 254
Score = 29.0 bits (66), Expect = 2.4
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 307 PKEIEEFIQTHPNVLEAY 324
+E + + + P V+E Y
Sbjct: 237 GEEEIKNVLSDPKVVEIY 254
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A
{Homo sapiens}
Length = 508
Score = 29.1 bits (65), Expect = 2.7
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 85 HPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKV 130
P +L G+P+ G+S++ K ++IR KV
Sbjct: 439 RPEMLLPM--GLPENVSVIAWGLSLERPTMIKYGINNIRELVGHKV 482
Score = 29.1 bits (65), Expect = 2.7
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 317 HPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKV 362
P +L G+P+ G+S++ K ++IR KV
Sbjct: 439 RPEMLLPM--GLPENVSVIAWGLSLERPTMIKYGINNIRELVGHKV 482
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 5.3
Identities = 7/15 (46%), Positives = 11/15 (73%), Gaps = 1/15 (6%)
Query: 108 SIK-LKENAKLNADD 121
++K L+ + KL ADD
Sbjct: 21 ALKKLQASLKLYADD 35
Score = 27.2 bits (59), Expect = 5.3
Identities = 7/15 (46%), Positives = 11/15 (73%), Gaps = 1/15 (6%)
Query: 340 SIK-LKENAKLNADD 353
++K L+ + KL ADD
Sbjct: 21 ALKKLQASLKLYADD 35
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB:
1b9y_C 1b9x_C
Length = 245
Score = 27.3 bits (60), Expect = 6.7
Identities = 8/49 (16%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 56 GQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 104
G+++ + + E + ++E F+ + +L V ++ EE
Sbjct: 195 GELLSNFISVTEQLAEEFFTGDVESFLNEY-GLLPEKEMHVLEQTNMEE 242
Score = 27.3 bits (60), Expect = 6.7
Identities = 8/49 (16%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 288 GQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 336
G+++ + + E + ++E F+ + +L V ++ EE
Sbjct: 195 GELLSNFISVTEQLAEEFFTGDVESFLNEY-GLLPEKEMHVLEQTNMEE 242
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 27.6 bits (61), Expect = 8.3
Identities = 9/57 (15%), Positives = 14/57 (24%), Gaps = 22/57 (38%)
Query: 317 HPNVLEA-------YAYGVPDERMGEEVGISIKLKENA--KLNADDIRTFCKGKVSK 364
P L G+ ER+ A N D+R + +
Sbjct: 321 SPVALSKYGIDVPVMNLGLGVERL-------------AMISGNFADVREMVYPQFYE 364
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.142 0.436
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,839,606
Number of extensions: 363474
Number of successful extensions: 1148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1117
Number of HSP's successfully gapped: 84
Length of query: 365
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 270
Effective length of database: 4,049,298
Effective search space: 1093310460
Effective search space used: 1093310460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.0 bits)