RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13046
(365 letters)
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes
sp. [TaxId: 512]}
Length = 503
Score = 97.8 bits (242), Expect = 6e-23
Identities = 33/88 (37%), Positives = 50/88 (56%)
Query: 42 FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
+ + D V +G +++GR+ DMII GGENI+P EIE + T P V E G+ D+R
Sbjct: 381 YRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRW 440
Query: 102 GEEVGISIKLKENAKLNADDIRTFCKGK 129
G+ V + + L+AD + TFC+
Sbjct: 441 GQSVTACVVPRLGETLSADALDTFCRSS 468
Score = 94.3 bits (233), Expect = 9e-22
Identities = 31/78 (39%), Positives = 46/78 (58%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
+G +++GR+ DMII GGENI+P EIE + T P V E G+ D+R G+ V +
Sbjct: 391 PEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVP 450
Query: 344 KENAKLNADDIRTFCKGK 361
+ L+AD + TFC+
Sbjct: 451 RLGETLSADALDTFCRSS 468
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
[TaxId: 7054]}
Length = 541
Score = 94.6 bits (234), Expect = 6e-22
Identities = 24/89 (26%), Positives = 41/89 (46%)
Query: 42 FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
S D ED + +V R+K +I G + P E+E + HPN+ +A G+PD+
Sbjct: 415 LHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDA 474
Query: 102 GEEVGISIKLKENAKLNADDIRTFCKGKV 130
GE + L+ + +I + +V
Sbjct: 475 GELPAAVVVLEHGKTMTEKEIVDYVASQV 503
Score = 93.8 bits (232), Expect = 1e-21
Identities = 22/85 (25%), Positives = 40/85 (47%)
Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
ED + +V R+K +I G + P E+E + HPN+ +A G+PD+ GE
Sbjct: 422 YWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAV 481
Query: 341 IKLKENAKLNADDIRTFCKGKVSKF 365
+ L+ + +I + +V+
Sbjct: 482 VVLEHGKTMTEKEIVDYVASQVTTA 506
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
[TaxId: 28901]}
Length = 643
Score = 92.0 bits (228), Expect = 5e-21
Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 42 FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
+ S D EDGY + GR+ D++ G + EIE + HP + EA G+P
Sbjct: 492 YFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIK 551
Query: 102 GEEVGISIKLKENAKLNAD---DIRTFCKGKV 130
G+ + + L + + + ++R + + ++
Sbjct: 552 GQAIYAYVTLNHGEEPSPELYAEVRNWVRKEI 583
Score = 92.0 bits (228), Expect = 7e-21
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
EDGY + GR+ D++ G + EIE + HP + EA G+P G+ +
Sbjct: 499 RRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAY 558
Query: 341 IKLKENAKLNAD---DIRTFCKGKVSKF 365
+ L + + + ++R + + ++
Sbjct: 559 VTLNHGEEPSPELYAEVRNWVRKEIGPL 586
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
synthetase 1 {Bacillus brevis [TaxId: 1393]}
Length = 514
Score = 91.1 bits (225), Expect = 8e-21
Identities = 14/91 (15%), Positives = 35/91 (38%), Gaps = 2/91 (2%)
Query: 275 RPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMG 334
+ Q DG + +GRI + + G + +E+E + H + E D +
Sbjct: 394 KTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQ 453
Query: 335 EEVGISIKLKENAKLNADDIRTFCKGKVSKF 365
+ +++ + + +R F ++ +
Sbjct: 454 PYLCAYFVSEKH--IPLEQLRQFSSEELPTY 482
Score = 88.0 bits (217), Expect = 9e-20
Identities = 15/89 (16%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
Query: 42 FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
+ + DQ DG + +GRI + + G + +E+E + H + E D +
Sbjct: 393 YKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQE 452
Query: 102 GEEVGISIKLKENAKLNADDIRTFCKGKV 130
+ +++ + + +R F ++
Sbjct: 453 QPYLCAYFVSEKH--IPLEQLRQFSSEEL 479
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus
subtilis [TaxId: 1423]}
Length = 536
Score = 89.3 bits (220), Expect = 4e-20
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 274 QRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 333
R L DGY V GR KD I RGGE + +E+E + HP V +A +PD+ +
Sbjct: 409 YRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFL 468
Query: 334 GEEVGISIKLKENAKLNADDIRTFCKGKV 362
GE + I ++ A A +++ F + +
Sbjct: 469 GERSCVFIIPRDEA-PKAAELKAFLRERG 496
Score = 88.1 bits (217), Expect = 9e-20
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 46 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 105
D L DGY V GR KD I RGGE + +E+E + HP V +A +PD+ +GE
Sbjct: 413 DIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERS 472
Query: 106 GISIKLKENAKLNADDIRTFCKGKV 130
+ I ++ A A +++ F + +
Sbjct: 473 CVFIIPRDEA-PKAAELKAFLRERG 496
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168
{Thermus thermophilus [TaxId: 274]}
Length = 534
Score = 88.0 bits (217), Expect = 1e-19
Identities = 23/89 (25%), Positives = 37/89 (41%)
Query: 42 FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
F + D V E+GY ++ R+KD+I GGE I ++E + HP V EA +P +
Sbjct: 407 FRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKW 466
Query: 102 GEEVGISIKLKENAKLNADDIRTFCKGKV 130
E + + + K
Sbjct: 467 QERPLAVVVPRGEKPTPEELNEHLLKAGF 495
Score = 87.6 bits (216), Expect = 1e-19
Identities = 22/85 (25%), Positives = 37/85 (43%)
Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
V E+GY ++ R+KD+I GGE I ++E + HP V EA +P + E
Sbjct: 414 VWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAV 473
Query: 341 IKLKENAKLNADDIRTFCKGKVSKF 365
+ + + K +K+
Sbjct: 474 VVPRGEKPTPEELNEHLLKAGFAKW 498
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 640
Score = 84.5 bits (208), Expect = 2e-18
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
Query: 42 FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
+ + D +DGY ++GR+ D++ G + EIE I P V E G D+
Sbjct: 482 YFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLT 541
Query: 102 GEEVGISIKLKENAKLNA------DDIRTFCKGKVKRKIS 135
G+ V + LK + + DI+ V++ I
Sbjct: 542 GQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIG 581
Score = 82.6 bits (203), Expect = 7e-18
Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 10/95 (10%)
Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
+DGY ++GR+ D++ G + EIE I P V E G D+ G+ V
Sbjct: 489 AKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAF 548
Query: 341 IKLKENAKLNA----------DDIRTFCKGKVSKF 365
+ LK + + + + + F
Sbjct: 549 VVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPF 583
>d1nvma1 a.5.7.1 (A:291-341) 4-hydroxy-2-oxovalerate aldolase
DmpG, communication domain {Pseudomonas sp. [TaxId:
306]}
Length = 51
Score = 24.6 bits (54), Expect = 4.1
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 26 FDSFLLFVELCLLLFPFLSRDQFVLREDGYGQVVGRIKDMII 67
+ SFL E+ + + D +L E G+ ++VG +DMI+
Sbjct: 1 YSSFLRHAEIAAAKYNLKTLD--ILVELGHRRMVGGQEDMIV 40
>d1iq8a3 b.122.1.1 (A:506-582) Archaeosine tRNA-guanine
transglycosylase, C3 domain {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 77
Score = 24.4 bits (53), Expect = 8.6
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 308 KEIEEFIQTHPNVLEAYAYGV-PDERMGEEVGISIKLKE-----NAKLNADDIRTFCKGK 361
KE E F + +V + P R +EV + + E A L+ ++ F G+
Sbjct: 9 KEAEPFARKGKDVFAKFVIFADPGIRPYDEVLVVNENDELLATGQALLSGREMIVFQYGR 68
Query: 362 VSK 364
K
Sbjct: 69 AVK 71
>d2iafa1 d.81.2.1 (A:4-148) L-serine dehydratase SdhL, N-terminal
domain {Legionella pneumophila [TaxId: 446]}
Length = 145
Score = 25.3 bits (55), Expect = 9.1
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 79 EEFIQTHPNVLEAYAYGVPDERMGEEVGISI 109
+E + H N + A+ + E+V SI
Sbjct: 102 KELLPKHSNGMRFSAFDGNANLLIEQVYYSI 132
Score = 25.3 bits (55), Expect = 9.1
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 311 EEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341
+E + H N + A+ + E+V SI
Sbjct: 102 KELLPKHSNGMRFSAFDGNANLLIEQVYYSI 132
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.142 0.436
Gapped
Lambda K H
0.267 0.0419 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,453,613
Number of extensions: 72336
Number of successful extensions: 305
Number of sequences better than 10.0: 1
Number of HSP's gapped: 304
Number of HSP's successfully gapped: 21
Length of query: 365
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 278
Effective length of database: 1,213,086
Effective search space: 337237908
Effective search space used: 337237908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)