Query psy13048
Match_columns 188
No_of_seqs 211 out of 1094
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 18:06:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13048.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13048hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4240|consensus 99.9 2.5E-28 5.3E-33 231.8 5.1 128 59-187 716-845 (1025)
2 KOG0689|consensus 99.8 5.2E-20 1.1E-24 164.5 5.8 124 59-183 144-273 (448)
3 KOG3518|consensus 99.8 5.9E-20 1.3E-24 157.7 5.6 123 59-181 203-352 (521)
4 KOG4424|consensus 99.7 6.1E-18 1.3E-22 152.9 9.7 122 59-181 141-284 (623)
5 cd00160 RhoGEF Guanine nucleot 99.7 9.3E-18 2E-22 132.2 7.6 89 59-147 84-181 (181)
6 smart00325 RhoGEF Guanine nucl 99.7 8.2E-17 1.8E-21 126.7 7.3 90 59-148 81-180 (180)
7 KOG2996|consensus 99.6 1.1E-15 2.4E-20 138.6 9.2 120 59-179 276-416 (865)
8 KOG3523|consensus 99.6 4.9E-15 1.1E-19 134.8 8.6 118 59-176 339-482 (695)
9 PF00621 RhoGEF: RhoGEF domain 99.5 5.2E-14 1.1E-18 109.7 7.4 88 61-148 82-180 (180)
10 KOG3520|consensus 99.4 4.9E-13 1.1E-17 129.3 9.8 123 59-182 478-634 (1167)
11 KOG3521|consensus 99.4 9.8E-13 2.1E-17 120.9 7.7 123 59-182 269-440 (846)
12 KOG4305|consensus 99.4 8E-13 1.7E-17 127.2 6.5 93 59-151 421-525 (1029)
13 KOG3519|consensus 99.3 3.3E-12 7.1E-17 121.9 4.6 94 59-152 422-525 (756)
14 KOG2070|consensus 99.2 6.3E-11 1.4E-15 106.3 9.0 138 43-181 161-322 (661)
15 KOG3522|consensus 98.5 1.7E-07 3.7E-12 88.8 6.9 75 64-151 91-169 (925)
16 KOG3524|consensus 98.1 4.3E-06 9.3E-11 78.2 6.5 99 64-163 467-585 (850)
17 COG5422 ROM1 RhoGEF, Guanine n 98.1 2.7E-06 5.8E-11 81.2 3.7 91 59-149 570-671 (1175)
18 KOG3531|consensus 97.5 6E-05 1.3E-09 71.9 2.8 125 59-184 623-765 (1036)
19 KOG4269|consensus 66.8 11 0.00024 37.5 5.1 94 59-152 418-540 (1112)
20 PF15601 Imm42: Immunity prote 51.4 20 0.00044 27.5 3.4 49 86-145 20-68 (134)
21 PF12407 Abdominal-A: Homeobox 34.6 19 0.00042 19.1 0.6 18 41-58 4-21 (24)
22 PHA03044 IMV membrane protein; 22.5 2.1E+02 0.0045 19.7 4.1 32 118-150 14-45 (74)
23 PHA01756 hypothetical protein 21.1 30 0.00065 28.5 -0.2 16 100-115 7-22 (268)
No 1
>KOG4240|consensus
Probab=99.94 E-value=2.5e-28 Score=231.80 Aligned_cols=128 Identities=52% Similarity=0.922 Sum_probs=124.3
Q ss_pred hhhhcccHHHHhcCHHHHHHHHHHhcc-HHHHHHHHhhCCCCCCcccccchhhhHHhhHHHHHHHHhcc-CChhHHHHHH
Q psy13048 59 HAQKFNMYVHYCRNKPDSNALLVQHGG-PLFEELQKKHRVDHPVSAYLIKPVQRITKYQLLLKDLQGEI-KGQGEIKDGL 136 (188)
Q Consensus 59 ~~~~f~~Y~~Yc~n~~~a~~~l~~~~~-~~f~~~~~~~~~~l~L~s~LikPVQRI~rY~LLLkeLlk~t-~d~~~l~~Al 136 (188)
|++.|.+|..||.|.+.+.+++..+.. +||.+|+++....+++.|||++|||||+||.|||++++++| ++..++++|+
T Consensus 716 ~~d~fqly~~Yc~nke~S~ql~~~~a~~~ff~e~qr~~~l~l~~~S~l~kpvqritkYqlllkell~~c~e~~~~lkd~l 795 (1025)
T KOG4240|consen 716 RADDFQLYAKYCQNKELSNQLIRLHAGCSFFQEIQRRHGLELSISSYLIKPVQRITKYQLLLKELLKCCCEGTGDLKDAL 795 (1025)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHhcccccccHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHH
Confidence 999999999999999999999988764 79999999999999999999999999999999999999988 8999999999
Q ss_pred HHHHHhhHHHhHHHhhhhhcCCCCCCcccccCeeeeceeEEEcCCcccccC
Q psy13048 137 EVMLSVPRKANDALHLSLLEAPADVNIDAMGEVVLQDALQVWDPKQLIRKE 187 (188)
Q Consensus 137 ~~~~~v~~~iNe~~~~~~i~~~~~~~l~~~g~Ll~~g~f~V~~~k~lirkG 187 (188)
++|..|++.+|+.||..+|+| ++.+|..+|.+|++|.|.||+++.++|||
T Consensus 796 ~~ml~v~k~~nd~mh~~~~~~-~d~nl~~lg~~~~q~~f~vw~~k~l~rk~ 845 (1025)
T KOG4240|consen 796 EVMLSVPKKVNDSMHLIALEG-YDGNLDELGKLIMQDSFSVWKPKALARKG 845 (1025)
T ss_pred HHHHhhhhhcccccCHHHHhh-hhhhHHHHHHHHhhccceeecHHHHhhhh
Confidence 999999999999999999999 99999999999999999999999999987
No 2
>KOG0689|consensus
Probab=99.80 E-value=5.2e-20 Score=164.52 Aligned_cols=124 Identities=35% Similarity=0.533 Sum_probs=116.9
Q ss_pred hhhhcc-cHHHHhcCHHHHHHHHHHhc-cHHHHHHHHhhCCCCCCcccccchhhhHHhhHHHHHHHHhcc----CChhHH
Q psy13048 59 HAQKFN-MYVHYCRNKPDSNALLVQHG-GPLFEELQKKHRVDHPVSAYLIKPVQRITKYQLLLKDLQGEI----KGQGEI 132 (188)
Q Consensus 59 ~~~~f~-~Y~~Yc~n~~~a~~~l~~~~-~~~f~~~~~~~~~~l~L~s~LikPVQRI~rY~LLLkeLlk~t----~d~~~l 132 (188)
|..+|. +|+.||.|.+....++.+.. ..||++++.+.+.++++.+||++|||||+||+|||+++++.| .|...+
T Consensus 144 h~~k~~~~y~~y~q~kp~s~~~~~~~~~~~~f~~~~~~~~~~l~l~~~l~kPiQR~~kYqlLL~~~~k~~~~~~~d~~~l 223 (448)
T KOG0689|consen 144 HERKNSVLYVTYCQNKPKSDYLLAEYDNEAFFQEYQTQLGHKLDLSSYLIKPVQRIMKYQLLLQDFLKFCEKAGDDTDAL 223 (448)
T ss_pred HHHHhhhhhhhhhcCCCCCcccceecccchhhHHHhhhcccccccchhhhhhhHHHHHHHHHHHHHHHHhhhcchhHHHH
Confidence 888887 99999999999977776654 689999999999999999999999999999999999999999 468899
Q ss_pred HHHHHHHHHhhHHHhHHHhhhhhcCCCCCCcccccCeeeeceeEEEcCCcc
Q psy13048 133 KDGLEVMLSVPRKANDALHLSLLEAPADVNIDAMGEVVLQDALQVWDPKQL 183 (188)
Q Consensus 133 ~~Al~~~~~v~~~iNe~~~~~~i~~~~~~~l~~~g~Ll~~g~f~V~~~k~l 183 (188)
.+|.+.|..+.+++|+++.+..+.| |++++..+|.++++++|.|++++..
T Consensus 224 ~~a~e~m~~~~~~~~d~~~~~~l~g-~e~~l~~qG~l~~qd~f~v~~~~~~ 273 (448)
T KOG0689|consen 224 CKAEEVMRFVLKRCNDMMQVGRLQG-FEGDLKAQGKLRRQDEFDVSHGRAG 273 (448)
T ss_pred HHHHHHHHHHHHHhHhhhccchhcc-cccchHhhccccccCccceeecccc
Confidence 9999999999999999999999999 9999999999999999999998876
No 3
>KOG3518|consensus
Probab=99.79 E-value=5.9e-20 Score=157.68 Aligned_cols=123 Identities=29% Similarity=0.511 Sum_probs=107.9
Q ss_pred hhhhcccHHHHhcCHHHHHHHHHHhc-----cHHHHHHHHhhCCCCCCcccccchhhhHHhhHHHHHHHHhcc------C
Q psy13048 59 HAQKFNMYVHYCRNKPDSNALLVQHG-----GPLFEELQKKHRVDHPVSAYLIKPVQRITKYQLLLKDLQGEI------K 127 (188)
Q Consensus 59 ~~~~f~~Y~~Yc~n~~~a~~~l~~~~-----~~~f~~~~~~~~~~l~L~s~LikPVQRI~rY~LLLkeLlk~t------~ 127 (188)
-.+.|..|+.||.||++.+.++.++. ..+|++-+..+.+.++|++||+||||||.||.|+|.+|.++. +
T Consensus 203 ~s~efe~yieyctny~rmmatl~~~~q~~ilaka~qerq~al~hsl~l~ayllkpvqrilkyhlfle~i~k~l~~~thpe 282 (521)
T KOG3518|consen 203 KSEEFEDYIEYCTNYHRMMATLTECMQNKILAKAFQERQEALKHSLPLGAYLLKPVQRILKYHLFLEEIEKHLDKDTHPE 282 (521)
T ss_pred cchhHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCChH
Confidence 45678999999999999999997753 378888888899999999999999999999999999999986 4
Q ss_pred ChhHHHHHHHHHHHhhHHHhHHHh-----------hhhhcCCCC-----CCcccccCeeeeceeEEEcCC
Q psy13048 128 GQGEIKDGLEVMLSVPRKANDALH-----------LSLLEAPAD-----VNIDAMGEVVLQDALQVWDPK 181 (188)
Q Consensus 128 d~~~l~~Al~~~~~v~~~iNe~~~-----------~~~i~~~~~-----~~l~~~g~Ll~~g~f~V~~~k 181 (188)
++..+..|.+.|+.++.+||+.++ ++.+..|.. .++...|+|+++|+|.+...|
T Consensus 283 el~qvk~ahd~m~~qa~~indekkkaeh~erlgeiqs~lqkwkadeiqi~dlsaygdllleatfr~agak 352 (521)
T KOG3518|consen 283 ELDQVKDAHDTMQRQAAHINDEKKKAEHAERLGEIQSLLQKWKADEIQIPDLSAYGDLLLEATFRIAGAK 352 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcccccccCCchhhhHHHHHHHHHHHhccc
Confidence 678899999999999999999875 467778987 678899999999999865443
No 4
>KOG4424|consensus
Probab=99.74 E-value=6.1e-18 Score=152.87 Aligned_cols=122 Identities=23% Similarity=0.334 Sum_probs=100.3
Q ss_pred hhhhcccHHHHhcCHHHHHHHHHHhc--cHHHHHHHHhhC-----CCCCCcccccchhhhHHhhHHHHHHHHhcc----C
Q psy13048 59 HAQKFNMYVHYCRNKPDSNALLVQHG--GPLFEELQKKHR-----VDHPVSAYLIKPVQRITKYQLLLKDLQGEI----K 127 (188)
Q Consensus 59 ~~~~f~~Y~~Yc~n~~~a~~~l~~~~--~~~f~~~~~~~~-----~~l~L~s~LikPVQRI~rY~LLLkeLlk~t----~ 127 (188)
+++.|++|..|..||++|..++.... ++.|+.+..+++ .+++|+++||.||||||||.|||+++++++ +
T Consensus 141 lAPFLKmYseY~knydrA~~L~~~lt~rsp~F~~vl~~Iek~~~cg~l~LqhhMiePVQRIPRYeLLLk~yl~~lp~~d~ 220 (623)
T KOG4424|consen 141 LAPFLKMYSEYAKNYDRALKLFQTLTSRSPQFRKVVEEIEKQPECGGLKLQHHMIEPVQRVPRYELLLQDYLLYLPPDDP 220 (623)
T ss_pred hhhHHHHHHHHHhcchhHHHHHHHHHhhChHHHHHHHHHhhchhcCCccchhheechhhhhhHHHHHHHHHHHhCCCCCc
Confidence 78899999999999999999997743 477877776644 359999999999999999999999999999 5
Q ss_pred ChhHHHHHHHHHHHhhHHHhHHHhh----------hhhcCCCCCCcc-cccCeeeeceeEEEcCC
Q psy13048 128 GQGEIKDGLEVMLSVPRKANDALHL----------SLLEAPADVNID-AMGEVVLQDALQVWDPK 181 (188)
Q Consensus 128 d~~~l~~Al~~~~~v~~~iNe~~~~----------~~i~~~~~~~l~-~~g~Ll~~g~f~V~~~k 181 (188)
|+.++++|++.|...+.++|.+|+. ...-| .+.+|. ...+||..|.++....+
T Consensus 221 D~~d~~ksLe~I~~aA~HsNaai~k~E~~~kLlevqe~LG-~e~dIV~PsreLiKEG~l~Kis~k 284 (623)
T KOG4424|consen 221 DYKDLKKSLELISTAASHSNAAITKMERLQKLLEVQEQLG-NEEDIVSPSRELIKEGQLQKISAK 284 (623)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCccccCcHHHHhhccceeeeecc
Confidence 8999999999999999999999861 12223 344544 45568999988877655
No 5
>cd00160 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
Probab=99.73 E-value=9.3e-18 Score=132.23 Aligned_cols=89 Identities=36% Similarity=0.604 Sum_probs=81.7
Q ss_pred hhhhcccHHHHhcCHHHHHHHHHHhc--cHHHHHHHHhhC---CCCCCcccccchhhhHHhhHHHHHHHHhcc----CCh
Q psy13048 59 HAQKFNMYVHYCRNKPDSNALLVQHG--GPLFEELQKKHR---VDHPVSAYLIKPVQRITKYQLLLKDLQGEI----KGQ 129 (188)
Q Consensus 59 ~~~~f~~Y~~Yc~n~~~a~~~l~~~~--~~~f~~~~~~~~---~~l~L~s~LikPVQRI~rY~LLLkeLlk~t----~d~ 129 (188)
|.+.|.+|..||.|++.+...+.... +++|+++.+... ..++|.+||++|||||+||+|||++|+|+| +|+
T Consensus 84 ~~~~~~~Y~~Y~~~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~l~~~L~~PvQRl~rY~lLL~~l~k~t~~~~~d~ 163 (181)
T cd00160 84 LAPFFKIYSEYCSNHPDALELLKKLKKFNKFFQEFLEKAESECGRLKLESLLLKPVQRLTKYPLLLKELLKHTPDGHEDR 163 (181)
T ss_pred hhhHHHHHHHHHhChHHHHHHHHHHHHccHHHHHHHHHHHHhcccCCHHHHhhhhHHHhchHHHHHHHHHHhCCCCCCCH
Confidence 77777999999999999999998763 689999888764 679999999999999999999999999999 588
Q ss_pred hHHHHHHHHHHHhhHHHh
Q psy13048 130 GEIKDGLEVMLSVPRKAN 147 (188)
Q Consensus 130 ~~l~~Al~~~~~v~~~iN 147 (188)
..++.|++.++.++.+||
T Consensus 164 ~~l~~a~~~~~~~~~~iN 181 (181)
T cd00160 164 EDLKKALEAIKEVASQVN 181 (181)
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 999999999999999998
No 6
>smart00325 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases. Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage.
Probab=99.68 E-value=8.2e-17 Score=126.72 Aligned_cols=90 Identities=32% Similarity=0.600 Sum_probs=77.0
Q ss_pred hhhhcccHHHHhcCHHHHHHHHHHh-ccHHHHHHHHhhC-----CCCCCcccccchhhhHHhhHHHHHHHHhcc----CC
Q psy13048 59 HAQKFNMYVHYCRNKPDSNALLVQH-GGPLFEELQKKHR-----VDHPVSAYLIKPVQRITKYQLLLKDLQGEI----KG 128 (188)
Q Consensus 59 ~~~~f~~Y~~Yc~n~~~a~~~l~~~-~~~~f~~~~~~~~-----~~l~L~s~LikPVQRI~rY~LLLkeLlk~t----~d 128 (188)
|.+.|..|..||.|++.+...+.+. .++.|..+.+... ..++|.+||++||||++||+|||++|+++| +|
T Consensus 81 ~~~~~~~Y~~Y~~~~~~~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~L~~PvqRl~rY~lll~~l~k~t~~~~~d 160 (180)
T smart00325 81 LEEFFKIYSEYCSNHPDALELLKKLKKNPRFQKFLKEIESSPQCRRLTLESLLLKPVQRLTKYPLLLKELLKHTPEDHED 160 (180)
T ss_pred hhHHHHHHHHHHHhHHHHHHHHHHhhcChhHHHHHHHHhCChhhccCCHHHHHhHHHHHhccHHHHHHHHHHhCCCCCCC
Confidence 6677899999999999999999773 2455555554432 238999999999999999999999999999 58
Q ss_pred hhHHHHHHHHHHHhhHHHhH
Q psy13048 129 QGEIKDGLEVMLSVPRKAND 148 (188)
Q Consensus 129 ~~~l~~Al~~~~~v~~~iNe 148 (188)
+..++.|++.|..++.+||+
T Consensus 161 ~~~l~~a~~~~~~~~~~iNe 180 (180)
T smart00325 161 REDLKKALKAIKELANQVNE 180 (180)
T ss_pred HHHHHHHHHHHHHHHHHcCC
Confidence 89999999999999999995
No 7
>KOG2996|consensus
Probab=99.62 E-value=1.1e-15 Score=138.55 Aligned_cols=120 Identities=23% Similarity=0.374 Sum_probs=103.1
Q ss_pred hhhhcccHHHHhcCHHHHHHHHHHh--cc----HHHHHHHHhhC-CCCCCcccccchhhhHHhhHHHHHHHHhcc---CC
Q psy13048 59 HAQKFNMYVHYCRNKPDSNALLVQH--GG----PLFEELQKKHR-VDHPVSAYLIKPVQRITKYQLLLKDLQGEI---KG 128 (188)
Q Consensus 59 ~~~~f~~Y~~Yc~n~~~a~~~l~~~--~~----~~f~~~~~~~~-~~l~L~s~LikPVQRI~rY~LLLkeLlk~t---~d 128 (188)
+.++|-+|..||+|-+.|...+.+. .. ...++|..+.. .+.+|.++|+-|+||++||+|||++|+|+| ++
T Consensus 276 yker~liYG~YCS~~e~a~k~ln~llktrEdv~~kleEct~r~nngkF~l~DLL~VPmQRvlKYhLLLkEL~kht~~a~e 355 (865)
T KOG2996|consen 276 YKERLLIYGKYCSNVESARKLLNELLKTREDVSRKLEECTARANNGKFTLRDLLVVPMQRVLKYHLLLKELVKHTDEASE 355 (865)
T ss_pred HHHHHhhhhhhhccchHHHHHHHHHHHHhHHHHHHHHHHHhhhcCCceeeceeeeeeHHHHHHHHHHHHHHHHhcccCCh
Confidence 8899999999999999999999763 22 34456666655 669999999999999999999999999999 46
Q ss_pred hhHHHHHHHHHHHhhHHHhHHHh-----------hhhhcCCCCCCcccccCeeeeceeEEEc
Q psy13048 129 QGEIKDGLEVMLSVPRKANDALH-----------LSLLEAPADVNIDAMGEVVLQDALQVWD 179 (188)
Q Consensus 129 ~~~l~~Al~~~~~v~~~iNe~~~-----------~~~i~~~~~~~l~~~g~Ll~~g~f~V~~ 179 (188)
...|+.|+++|+.++..||+..+ +..|++ ...++...|+.-..|++.+.+
T Consensus 356 k~~LkeAleaM~Dla~yiNEvkRD~etlr~I~efq~SIen-L~~pl~~~GRpkiDGElki~s 416 (865)
T KOG2996|consen 356 KRNLKEALEAMEDLAQYINEVKRDNETLRVIDEFQLSIEN-LSQPLHDFGRPKIDGELKITS 416 (865)
T ss_pred hhhHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHhHHh-hcchHHHhCCCCcCceEEEee
Confidence 66999999999999999999876 456777 778888999999999998775
No 8
>KOG3523|consensus
Probab=99.58 E-value=4.9e-15 Score=134.76 Aligned_cols=118 Identities=24% Similarity=0.404 Sum_probs=94.2
Q ss_pred hhh-hcccHHHHhcCHHHHHHHHHHh--ccHHHHHHHHhhC-----CCCCCcccccchhhhHHhhHHHHHHHHhcc----
Q psy13048 59 HAQ-KFNMYVHYCRNKPDSNALLVQH--GGPLFEELQKKHR-----VDHPVSAYLIKPVQRITKYQLLLKDLQGEI---- 126 (188)
Q Consensus 59 ~~~-~f~~Y~~Yc~n~~~a~~~l~~~--~~~~f~~~~~~~~-----~~l~L~s~LikPVQRI~rY~LLLkeLlk~t---- 126 (188)
|++ .|.+|+.||.|+.....++++. .++.|.+...+++ .+|+|.||||.|+|||||+|||++.|++.|
T Consensus 339 ha~~~f~vYv~Y~tNQ~YQeRT~qrL~~~n~~F~e~l~rLE~~p~C~~Lpl~SFLiLPmQRITRL~LLl~nIl~rt~~~s 418 (695)
T KOG3523|consen 339 HAAKHFSVYVKYCTNQVYQERTLQRLLTENPAFREVLERLESSPKCQGLPLRSFLILPMQRITRLPLLLDNILKRTEEGS 418 (695)
T ss_pred hcccccceeehhccchHHHHHHHHHHHhcChHHHHHHHHHhcCccccCCCchhhhhchHHHHHHHHHHHHHHHhhcCCCC
Confidence 665 5589999999999999999885 4688888877755 359999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHhhHHHhHHHhh-------hhhcCC--C-C---CC-cccccCeeeeceeE
Q psy13048 127 KGQGEIKDGLEVMLSVPRKANDALHL-------SLLEAP--A-D---VN-IDAMGEVVLQDALQ 176 (188)
Q Consensus 127 ~d~~~l~~Al~~~~~v~~~iNe~~~~-------~~i~~~--~-~---~~-l~~~g~Ll~~g~f~ 176 (188)
+.|....+|+.+++.++..||+..+. -.|... | . .. |.....|+.+|+++
T Consensus 419 er~~~a~~Al~av~klVr~CNe~a~rMertEeli~i~~~leF~kvK~~PLiS~sRwLvk~GELt 482 (695)
T KOG3523|consen 419 ERYETATKALKAVSKLVRDCNEGARRMERTEELIRISRQLEFKKVKAFPLVSQSRWLVKRGELT 482 (695)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeeeccchhhhhhccccc
Confidence 46788999999999999999997651 111111 2 1 12 34556789999885
No 9
>PF00621 RhoGEF: RhoGEF domain; InterPro: IPR000219 The Rho family GTPases Rho, Rac and CDC42 regulate a diverse array of cellular processes. Like all members of the Ras superfamily, the Rho proteins cycle between active GTP-bound and inactive GDP-bound conformational states. Activation of Rho proteins through release of bound GDP and subsequent binding of GTP, is catalysed by guanine nucleotide exchange factors (GEFs) in the Dbl family. The proteins encoded by members of the Dbl family share a common domain, presented in this entry, of about 200 residues (designated the Dbl homology or DH domain) that has been shown to encode a GEF activity specific for a number of Rho family members. In addition, all family members possess a second, shared domain designated the pleckstrin homology (PH) domain (IPR001849 from INTERPRO). Trio and its homologue UNC-73 are unique within the Dbl family insomuch as they encode two distinct DH/PH domain modules. The PH domain is invariably located immediately C-terminal to the DH domain and this invariant topography suggests a functional interdependence between these two structural modules. Biochemical data have established the role of the conserved DH domain in Rho GTPase interaction and activation, and the role of the tandem PH domain in intracellular targeting and/or regulation of DH domain function. The DH domain of Dbl has been shown to mediate oligomerisation that is mostly homophilic in nature. In addition to the tandem DH/PH domains Dbl family GEFs contain diverse structural motifs like serine/threonine kinase, RBD, PDZ, RGS, IQ, REM, Cdc25, RasGEF, CH, SH2, SH3, EF, spectrin or Ig. The DH domain is composed of three structurally conserved regions separated by more variable regions. It does not share significant sequence homology with other subtypes of small G-protein GEF motifs such as the Cdc25 domain and the Sec7 domain, which specifically interact with Ras and ARF family small GTPases, respectively, nor with other Rho protein interactive motifs, indicating that the Dbl family proteins are evolutionarily unique. The DH domain is composed of 11 alpha helices that are folded into a flattened, elongated alpha-helix bundle in which two of the three conserved regions, conserved region 1 (CR1) and conserved region 3 (CR3), are exposed near the centre of one surface. CR1 and CR3, together with a part of alpha-6 and the DH/PH junction site, constitute the Rho GTPase interacting pocket.; GO: 0005089 Rho guanyl-nucleotide exchange factor activity, 0035023 regulation of Rho protein signal transduction, 0005622 intracellular; PDB: 3MPX_A 2RGN_E 2Z0Q_A 3T06_A 3KZ1_A 1XCG_E 2KR9_A 1BY1_A 1RJ2_J 1KZG_C ....
Probab=99.50 E-value=5.2e-14 Score=109.75 Aligned_cols=88 Identities=27% Similarity=0.511 Sum_probs=73.6
Q ss_pred hhcccHHHHhcCHHHHHHHHHHhc--cHHHHHHHHh-----hCCCCCCcccccchhhhHHhhHHHHHHHHhcc----CCh
Q psy13048 61 QKFNMYVHYCRNKPDSNALLVQHG--GPLFEELQKK-----HRVDHPVSAYLIKPVQRITKYQLLLKDLQGEI----KGQ 129 (188)
Q Consensus 61 ~~f~~Y~~Yc~n~~~a~~~l~~~~--~~~f~~~~~~-----~~~~l~L~s~LikPVQRI~rY~LLLkeLlk~t----~d~ 129 (188)
+.+.+|..||.+++.+...+.... +..|..+.+. ....+++.+||++|+|||+||+++|++|+++| +|+
T Consensus 82 ~~~~~Y~~Y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~Piqrl~rY~lll~~llk~t~~~~~d~ 161 (180)
T PF00621_consen 82 PFLKVYISYCSNYPDALSLLEELRKKNSEFKKFLEEIENSPESKRLSLSSLLIKPIQRLPRYPLLLKRLLKNTPPDHPDY 161 (180)
T ss_dssp TGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHCTTSTHHHHTTHHHHHHHHHHHHHHHHHHTSSTTSTHH
T ss_pred ccccceeccchheechhhhhhHHHhhccccccccccccccccccCCCHHHHHHHhhhHHHHHHHHHHHHHHcCCCCChhH
Confidence 456799999999999999996632 2334544442 33568999999999999999999999999999 478
Q ss_pred hHHHHHHHHHHHhhHHHhH
Q psy13048 130 GEIKDGLEVMLSVPRKAND 148 (188)
Q Consensus 130 ~~l~~Al~~~~~v~~~iNe 148 (188)
..++.|+..+.++..+||+
T Consensus 162 ~~L~~a~~~i~~l~~~in~ 180 (180)
T PF00621_consen 162 KSLQKALDQIKELIQHINE 180 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCc
Confidence 8999999999999999996
No 10
>KOG3520|consensus
Probab=99.43 E-value=4.9e-13 Score=129.27 Aligned_cols=123 Identities=17% Similarity=0.319 Sum_probs=97.4
Q ss_pred hhhhc-ccHHHHhcCHHHHHHHHHHh--ccHHHHHHHHhhCC-----CCCCcccccchhhhHHhhHHHHHHHHhcc----
Q psy13048 59 HAQKF-NMYVHYCRNKPDSNALLVQH--GGPLFEELQKKHRV-----DHPVSAYLIKPVQRITKYQLLLKDLQGEI---- 126 (188)
Q Consensus 59 ~~~~f-~~Y~~Yc~n~~~a~~~l~~~--~~~~f~~~~~~~~~-----~l~L~s~LikPVQRI~rY~LLLkeLlk~t---- 126 (188)
.++.| +.|..||++|..|.+.++.+ .++.|..+.++... ++.|.+.++.-+||||||||||+.|+|||
T Consensus 478 ~ae~L~~~~a~FCs~q~~ALe~~K~k~~KD~rFq~fvkkaeS~p~cRRL~lkd~I~~v~QRLTKYPLLle~I~k~T~~~~ 557 (1167)
T KOG3520|consen 478 NAERLKKTYAQFCSRQSIALEQLKTKQAKDKRFQAFVKKAESNPVCRRLGLKDCILLVTQRLTKYPLLLERILKYTEDNT 557 (1167)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHhccHHHHHHHHHhhcchHHHhhcchHHHHHHHHHHhhchHHHHHHHHhcCCCc
Confidence 66777 69999999999999999764 46788888877553 49999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHhhHHHhHHHh-------hhhhcCCCC---------------CCcccccCeeeeceeEEEcCCc
Q psy13048 127 KGQGEIKDGLEVMLSVPRKANDALH-------LSLLEAPAD---------------VNIDAMGEVVLQDALQVWDPKQ 182 (188)
Q Consensus 127 ~d~~~l~~Al~~~~~v~~~iNe~~~-------~~~i~~~~~---------------~~l~~~g~Ll~~g~f~V~~~k~ 182 (188)
.++.+|+.|++.+++|+..||.+++ +..|.+..+ .+| ...+||+.|.++...++.
T Consensus 558 ~E~e~L~~Al~~~K~IL~~Vn~aV~~~E~~~RL~eiq~RlD~~s~~~~~~~~~F~kldL-t~rkLihdG~Ltwk~~~g 634 (1167)
T KOG3520|consen 558 TEREKLQRALELVKEILSAVDQAVKEAEKKQRLEEIQRRLDAKSLSKYKNGEEFRKLDL-TRRKLIHDGPLTWKTARG 634 (1167)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhccccchhhhhhh-hhhheeccCceEEeeccC
Confidence 4789999999999999999999885 233332111 112 234688889887664443
No 11
>KOG3521|consensus
Probab=99.38 E-value=9.8e-13 Score=120.90 Aligned_cols=123 Identities=24% Similarity=0.369 Sum_probs=96.4
Q ss_pred hhhhcccHHHHhcCHHHHHHHHHHh--ccHHHHHHHHhhC-----CCCCCcccccchhhhHHhhHHHHHHHHhcc---CC
Q psy13048 59 HAQKFNMYVHYCRNKPDSNALLVQH--GGPLFEELQKKHR-----VDHPVSAYLIKPVQRITKYQLLLKDLQGEI---KG 128 (188)
Q Consensus 59 ~~~~f~~Y~~Yc~n~~~a~~~l~~~--~~~~f~~~~~~~~-----~~l~L~s~LikPVQRI~rY~LLLkeLlk~t---~d 128 (188)
+...|..|+.||..+..++..+++. .++.|..+....+ .++.|.+.|++|+||||||+|||+.++|.| ++
T Consensus 269 f~s~f~pY~~ycle~s~cm~y~rel~~~n~lFrafvtW~Ekqk~c~RqkL~D~l~kPmQRLTKY~LLLkAVlK~t~d~~e 348 (846)
T KOG3521|consen 269 FGSWFRPYTNYCLEHSDCMKYIRELLKENELFRAFVTWAEKQKNCDRQKLIDTLSKPMQRLTKYPLLLKAVLKVTTDERE 348 (846)
T ss_pred HHHhhhHHHHHHHHHhHHHHHHHHHhccchHHHHHHHHHHhhhhhhhHHHHHHhhhHHHHhhhhHHHHHHHHhhCCCHHH
Confidence 7788999999999999999999774 5677776665433 358999999999999999999999999999 35
Q ss_pred hhHHHHHHHHHHHhhHHHhHHHhh-----------hhhcCCCCC----------Cc------------------ccccCe
Q psy13048 129 QGEIKDGLEVMLSVPRKANDALHL-----------SLLEAPADV----------NI------------------DAMGEV 169 (188)
Q Consensus 129 ~~~l~~Al~~~~~v~~~iNe~~~~-----------~~i~~~~~~----------~l------------------~~~g~L 169 (188)
.+.|...++.++..+.+||..+++ .+|++ ++. +| ..-..|
T Consensus 349 ~Eai~aMi~svEsf~~~vN~~l~qrqererL~~vm~rIe~-ydvVd~~sdevdknLK~~~~~~Dl~apm~g~~~~htRqL 427 (846)
T KOG3521|consen 349 REAISAMIDSVESFTAHVNKELRQRQERERLAAVMRRIEG-YDVVDQDSDEVDKNLKLFLNLLDLTAPMHGRKPEHTRQL 427 (846)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc-ccccCCcHHHHHHHhhhhhhhhccccCCCCCChhhhhhh
Confidence 667778888888889999987752 45555 431 01 122568
Q ss_pred eeeceeEEEcCCc
Q psy13048 170 VLQDALQVWDPKQ 182 (188)
Q Consensus 170 l~~g~f~V~~~k~ 182 (188)
++.|.+.+.+||.
T Consensus 428 lleGdlrmKegk~ 440 (846)
T KOG3521|consen 428 LLEGDLRMKEGKG 440 (846)
T ss_pred hhccceecccCCC
Confidence 8999999998873
No 12
>KOG4305|consensus
Probab=99.36 E-value=8e-13 Score=127.19 Aligned_cols=93 Identities=23% Similarity=0.394 Sum_probs=83.3
Q ss_pred hhhhcccHHHHhcCHHHHHHHHHHh--ccHHHHHHHHhhC-----CCCCCcccccchhhhHHhhHHHHHHHHhcc-----
Q psy13048 59 HAQKFNMYVHYCRNKPDSNALLVQH--GGPLFEELQKKHR-----VDHPVSAYLIKPVQRITKYQLLLKDLQGEI----- 126 (188)
Q Consensus 59 ~~~~f~~Y~~Yc~n~~~a~~~l~~~--~~~~f~~~~~~~~-----~~l~L~s~LikPVQRI~rY~LLLkeLlk~t----- 126 (188)
|.+.|+.|..||++++.|..+++.+ .++.|+++.+.+. .+++|.+||.+|+||+.||||||++|+|||
T Consensus 421 ~lp~~~~yi~Y~a~q~~ak~lie~k~k~n~~Fa~fl~~~~~sp~~rkl~L~~FL~kp~sRl~RYpLllr~ILk~TdP~n~ 500 (1029)
T KOG4305|consen 421 WLPKAEPYISYGANQAYAKALIEQKKKQNPRFARFLKECESSPESRKLDLVSFLTKPTSRLQRYPLLLREILKHTDPENH 500 (1029)
T ss_pred HhhhhhHHHHHHhhhHHHHHHHHHHhccCchHHHHHHHHHhChhhhccchhhhhccccchhheeeHHHHHHHhcCCCCCC
Confidence 9999999999999999999999765 3577777766543 459999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHhhHHHhHHHh
Q psy13048 127 KGQGEIKDGLEVMLSVPRKANDALH 151 (188)
Q Consensus 127 ~d~~~l~~Al~~~~~v~~~iNe~~~ 151 (188)
+|+..|.+|+++++.++.+||....
T Consensus 501 ~D~q~L~~aI~~ir~l~~~iN~~~g 525 (1029)
T KOG4305|consen 501 PDLQLLKKAIEIIRGLLSEINQGSG 525 (1029)
T ss_pred ccHHHHHHHHHHHHHHHHHhChhhc
Confidence 5899999999999999999999764
No 13
>KOG3519|consensus
Probab=99.26 E-value=3.3e-12 Score=121.90 Aligned_cols=94 Identities=28% Similarity=0.463 Sum_probs=83.1
Q ss_pred hhhhcccHHHHhcCHHHHHHHHHHhc-----cHHHHHHHHhhCCC-CCCcccccchhhhHHhhHHHHHHHHhcc----CC
Q psy13048 59 HAQKFNMYVHYCRNKPDSNALLVQHG-----GPLFEELQKKHRVD-HPVSAYLIKPVQRITKYQLLLKDLQGEI----KG 128 (188)
Q Consensus 59 ~~~~f~~Y~~Yc~n~~~a~~~l~~~~-----~~~f~~~~~~~~~~-l~L~s~LikPVQRI~rY~LLLkeLlk~t----~d 128 (188)
+.+.|.+|..||.+++.+...+.... ..|+..|....... .+|.+||++|||||+||||+|.++++.| .+
T Consensus 422 ~~~~f~~ys~yc~~h~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~L~s~l~~pvqri~kYPLll~elld~t~~~~~~ 501 (756)
T KOG3519|consen 422 QLDVFKIYSEYCNNHPKAQKKLSKLKKKKKVKEFLEACNLLQQHSNSSLSSFLLKPVQRICKYPLLLNELLDSTPLESSD 501 (756)
T ss_pred hcccceeechhhhccchHHHHHHHHhhhhhhhhhhhhhhhhhccccCCchhhhccHHHHhccCchhhhhhhhhccCCcch
Confidence 88999999999999999999996632 36777776655544 9999999999999999999999999999 48
Q ss_pred hhHHHHHHHHHHHhhHHHhHHHhh
Q psy13048 129 QGEIKDGLEVMLSVPRKANDALHL 152 (188)
Q Consensus 129 ~~~l~~Al~~~~~v~~~iNe~~~~ 152 (188)
+..+..|+..|..++..||++.+.
T Consensus 502 ~~~l~~a~~~m~~~~~~INe~~~~ 525 (756)
T KOG3519|consen 502 YVPLSAALPAMKTVASLINEMKRK 525 (756)
T ss_pred hhhhhhhhhhhhhHHHHHhhhhcc
Confidence 999999999999999999999863
No 14
>KOG2070|consensus
Probab=99.20 E-value=6.3e-11 Score=106.28 Aligned_cols=138 Identities=18% Similarity=0.376 Sum_probs=108.5
Q ss_pred ccchHHHhhhHhhhHh------hhhhc-ccHHHHhcCHHHHHHHHHHhccHHHHHHHHhhCC----CCCCcccccchhhh
Q psy13048 43 KETNEEKRKSARKKEA------HAQKF-NMYVHYCRNKPDSNALLVQHGGPLFEELQKKHRV----DHPVSAYLIKPVQR 111 (188)
Q Consensus 43 ~~~~~~~r~~~r~~e~------~~~~f-~~Y~~Yc~n~~~a~~~l~~~~~~~f~~~~~~~~~----~l~L~s~LikPVQR 111 (188)
.+|.|......-++.. .++.| .+|..||.|||.|..+|.++.. -++.+.+..+. -+-|..-|-+|+.|
T Consensus 161 ~qlEec~~~~~~q~RVGg~fln~ap~mkt~~~aYcanHP~AV~VL~k~~d-ELek~me~Qgasspg~lvLttgLSkPfrr 239 (661)
T KOG2070|consen 161 QQLEECTKLPEAQQRVGGCFLNLAPQMKTLYLAYCANHPSAVNVLTKHSD-ELEKFMETQGASSPGILVLTTGLSKPFRR 239 (661)
T ss_pred HHHHHhhcCchhhhhhhhHHHhhhHHHHHHHHHHHhcCchhhhHHHHhHH-HHHHHHHhcCCCCCCeEEEecccchHHHH
Confidence 4555544433433333 66778 5999999999999999988854 34444443332 26677778999999
Q ss_pred HHhhHHHHHHHHhcc----CChhHHHHHHHHHHHhhHHHhHHHhh---------hhhcCCCCCCcccccCeeeeceeEEE
Q psy13048 112 ITKYQLLLKDLQGEI----KGQGEIKDGLEVMLSVPRKANDALHL---------SLLEAPADVNIDAMGEVVLQDALQVW 178 (188)
Q Consensus 112 I~rY~LLLkeLlk~t----~d~~~l~~Al~~~~~v~~~iNe~~~~---------~~i~~~~~~~l~~~g~Ll~~g~f~V~ 178 (188)
+-||+-||++|-++. +|+.|++.+..+.+++...|.+..++ ..+.+|-+.++..+|.+|..|...|.
T Consensus 240 ldkY~~lLQELERhme~~HpDrgD~qrs~avfk~~~~~Cq~lRkqKEleLqiLt~~i~~w~g~d~s~lG~iiymg~v~Vq 319 (661)
T KOG2070|consen 240 LDKYPTLLQELERHMEDYHPDRGDIQRSMAVFKNLSAQCQELRKQKELELQILTEPIRNWEGDDISTLGNIIYMGQVLVQ 319 (661)
T ss_pred HHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccchhhhccceEeeeehhhh
Confidence 999999999999997 79999999999999999999998764 45567999999999999999998885
Q ss_pred cCC
Q psy13048 179 DPK 181 (188)
Q Consensus 179 ~~k 181 (188)
.++
T Consensus 320 y~~ 322 (661)
T KOG2070|consen 320 YAG 322 (661)
T ss_pred hcC
Confidence 443
No 15
>KOG3522|consensus
Probab=98.53 E-value=1.7e-07 Score=88.77 Aligned_cols=75 Identities=23% Similarity=0.414 Sum_probs=68.1
Q ss_pred ccHHHHhcCHHHHHHHHHHhccHHHHHHHHhhCCCCCCcccccchhhhHHhhHHHHHHHHhcc----CChhHHHHHHHHH
Q psy13048 64 NMYVHYCRNKPDSNALLVQHGGPLFEELQKKHRVDHPVSAYLIKPVQRITKYQLLLKDLQGEI----KGQGEIKDGLEVM 139 (188)
Q Consensus 64 ~~Y~~Yc~n~~~a~~~l~~~~~~~f~~~~~~~~~~l~L~s~LikPVQRI~rY~LLLkeLlk~t----~d~~~l~~Al~~~ 139 (188)
.+|..||.|+.+|...+...+.+.|.++.+ ++++| |+|+|.||++ |+||| ||+..|+.|+..+
T Consensus 91 ~~Y~~y~nn~~~A~~~l~~~~rpaf~~Fl~----------l~~kP--r~P~y~lll~-mlkhtp~~Hpdr~~Lq~al~~~ 157 (925)
T KOG3522|consen 91 AAYSKYVNNFKRAKCALRNKKRPAFSKFLE----------LMIKP--RFPRYELLLQ-MLKHTPLDHPDRLILQLALTLL 157 (925)
T ss_pred HHHHHHHhchhHHHHHHHHhcchHHHHHHH----------HHhcc--CCchHHHHHH-HhhcCCcCCCchHHHHHHHHhh
Confidence 799999999999999998766766766665 99999 9999999999 99999 6889999999999
Q ss_pred HHhhHHHhHHHh
Q psy13048 140 LSVPRKANDALH 151 (188)
Q Consensus 140 ~~v~~~iNe~~~ 151 (188)
..++.++|+.++
T Consensus 158 ~~~ae~ine~kr 169 (925)
T KOG3522|consen 158 ETLAEKINEHKR 169 (925)
T ss_pred HHHHHHHhhhhh
Confidence 999999999876
No 16
>KOG3524|consensus
Probab=98.15 E-value=4.3e-06 Score=78.24 Aligned_cols=99 Identities=19% Similarity=0.338 Sum_probs=79.1
Q ss_pred ccHHHHhcCHHHHHHHHHHh--ccHHHHHHHHhhC-----CCCCCcccccchhhhHHhhHHHHHHHHhcc--CChhHHHH
Q psy13048 64 NMYVHYCRNKPDSNALLVQH--GGPLFEELQKKHR-----VDHPVSAYLIKPVQRITKYQLLLKDLQGEI--KGQGEIKD 134 (188)
Q Consensus 64 ~~Y~~Yc~n~~~a~~~l~~~--~~~~f~~~~~~~~-----~~l~L~s~LikPVQRI~rY~LLLkeLlk~t--~d~~~l~~ 134 (188)
+.|-.|+.-+...-..+..+ ..+.|..|.+... .+..|.+.+|.||||++--.|||++|.|.. .|+..+++
T Consensus 467 kayppyvnffet~ke~~~~cdre~prfhaflKinq~kpecgRq~l~dlmirpvqrlpsvilllndl~k~s~N~dk~~lee 546 (850)
T KOG3524|consen 467 KAYPPYVNFFETIKELFDKCDRENPRFHAFLKINQSKPECGRQKLTDLMIRPVQRLPSVILLLNDMAKKSDNKDKNNLEE 546 (850)
T ss_pred HhccchhhHHHHhHHHHHHHhccchHHHHHHHccccchhhhhhcccchhccchhhhhHHHHHHHHHHhhccCcchhhHHH
Confidence 67777777777777777654 3467777766533 349999999999999999999999999955 78999999
Q ss_pred HHHHHHHhhHHHhHHHh-----------hhhhcCCCCCCc
Q psy13048 135 GLEVMLSVPRKANDALH-----------LSLLEAPADVNI 163 (188)
Q Consensus 135 Al~~~~~v~~~iNe~~~-----------~~~i~~~~~~~l 163 (188)
|...+.+|..+||+.++ ...|+| |+..+
T Consensus 547 a~kaikev~khInedKrkte~~~~ifdkf~dieg-cpa~l 585 (850)
T KOG3524|consen 547 AAKAIKEVLKHINEDKRKTENFISIFDKFTDIEG-CPAIL 585 (850)
T ss_pred hhhhHHHHHHHhchhHHHHHHHHHHHHHHHhhhc-Cchhh
Confidence 99999999999999876 256777 55433
No 17
>COG5422 ROM1 RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
Probab=98.07 E-value=2.7e-06 Score=81.24 Aligned_cols=91 Identities=19% Similarity=0.362 Sum_probs=75.6
Q ss_pred hhhhcccHHHHhcCHHHHHHHHHHh--ccHHHHHHHHh-----hCCCCCCcccccchhhhHHhhHHHHHHHHhcc----C
Q psy13048 59 HAQKFNMYVHYCRNKPDSNALLVQH--GGPLFEELQKK-----HRVDHPVSAYLIKPVQRITKYQLLLKDLQGEI----K 127 (188)
Q Consensus 59 ~~~~f~~Y~~Yc~n~~~a~~~l~~~--~~~~f~~~~~~-----~~~~l~L~s~LikPVQRI~rY~LLLkeLlk~t----~ 127 (188)
+.+.|..+..|.++++.|.-.++.. .++.|..+... ...++.+.+||-+|+-|++||+||+++++++| +
T Consensus 570 ~vP~Fepfiky~a~~~yaky~~erekS~np~fa~Fd~~v~rl~~s~k~~ld~yLtk~~tr~~Ry~lL~e~vlkftd~d~~ 649 (1175)
T COG5422 570 YVPKFEPFIKYGASQPYAKYEFEREKSVNPNFARFDHEVERLDESRKLELDGYLTKPTTRLARYPLLLEEVLKFTDPDNP 649 (1175)
T ss_pred hhhhhhHHHHhhcccchhheeeeeccccCcchhhhhHHHHhcchhhhhcccceecCCcccchhhHHHHhhhcccCCCCCc
Confidence 7889999999999999998888554 24555444333 23458999999999999999999999999999 4
Q ss_pred ChhHHHHHHHHHHHhhHHHhHH
Q psy13048 128 GQGEIKDGLEVMLSVPRKANDA 149 (188)
Q Consensus 128 d~~~l~~Al~~~~~v~~~iNe~ 149 (188)
|.++|-++++++++...++|-.
T Consensus 650 D~e~i~kv~d~~reFlsrl~~e 671 (1175)
T COG5422 650 DTEDIPKVIDMLREFLSRLNFE 671 (1175)
T ss_pred chhHhHHHHHHHHHHHHHHhHh
Confidence 6777889999999999999864
No 18
>KOG3531|consensus
Probab=97.50 E-value=6e-05 Score=71.91 Aligned_cols=125 Identities=15% Similarity=0.236 Sum_probs=89.0
Q ss_pred hhhhcccHHHHhcCHHHHHHHHHHhc--c----HHHHHHHHhhCCCCCCcccccchhhhHHhhHHHHHHHHhcc-C---C
Q psy13048 59 HAQKFNMYVHYCRNKPDSNALLVQHG--G----PLFEELQKKHRVDHPVSAYLIKPVQRITKYQLLLKDLQGEI-K---G 128 (188)
Q Consensus 59 ~~~~f~~Y~~Yc~n~~~a~~~l~~~~--~----~~f~~~~~~~~~~l~L~s~LikPVQRI~rY~LLLkeLlk~t-~---d 128 (188)
++..+++|..|...+......+.... . +.++++.....+.++++.||.+|++|+.-|+++|+.|..+. + |
T Consensus 623 ~m~~l~i~~~~~q~h~~~l~~~t~~~k~~~r~~~v~kefelqkvcyLP~~~fllkpL~rllhyq~~LeRLc~~~~~~h~d 702 (1036)
T KOG3531|consen 623 NMRSLKITTTTTQRHAETLTTLTTTSKVLTRLEAVYKEFELQKVCYLPLNTFLLKPLSRLLHYQLALERLCGHYSPTHED 702 (1036)
T ss_pred hhhccchhhhhHHhHHHHHHHHhhcchhhhhHHhhhccHHhhhccccccchhhhccccHHHHHHHHHHHhhcccCCCccc
Confidence 44566899999999999988886531 2 33444444455679999999999999999999999999987 4 5
Q ss_pred hhHHHHHHHHHHHhhHHHhHHHh--------hhhhcCCCCCCcccccCeeeeceeEEEcCCccc
Q psy13048 129 QGEIKDGLEVMLSVPRKANDALH--------LSLLEAPADVNIDAMGEVVLQDALQVWDPKQLI 184 (188)
Q Consensus 129 ~~~l~~Al~~~~~v~~~iNe~~~--------~~~i~~~~~~~l~~~g~Ll~~g~f~V~~~k~li 184 (188)
+.+...+.+.+......|...|- +..|.+ ++.-+....++++.|.+...+.|++-
T Consensus 703 ~ad~~a~~~~~~~~tk~iqs~m~~~e~l~Elkrdl~s-~e~LV~p~rE~ir~g~llK~skkgLq 765 (1036)
T KOG3531|consen 703 FADCKAKPNPITEPTKPLQSVMIRTEKLRELKRDLAS-IENLVHPGREFIRSGCLLKLSKKGLQ 765 (1036)
T ss_pred hHHHhhcccccccccccccccchhHHHHHHHHHhhhc-cccccCcchhhhhcCCchhhccccch
Confidence 55666666555555444443331 133555 55566677789999998888777653
No 19
>KOG4269|consensus
Probab=66.75 E-value=11 Score=37.46 Aligned_cols=94 Identities=17% Similarity=0.226 Sum_probs=71.8
Q ss_pred hhhhcccHHHHhcC--HHHHHHHHHHhc--cHHHHHHHHhhCC-----------CCCCcccccchhhhHHhhHHHHHHHH
Q psy13048 59 HAQKFNMYVHYCRN--KPDSNALLVQHG--GPLFEELQKKHRV-----------DHPVSAYLIKPVQRITKYQLLLKDLQ 123 (188)
Q Consensus 59 ~~~~f~~Y~~Yc~n--~~~a~~~l~~~~--~~~f~~~~~~~~~-----------~l~L~s~LikPVQRI~rY~LLLkeLl 123 (188)
.+..+-.|..|..| |..|+..-..++ ++-|+.+...+-. ..+..-.|-+|+-|.++.-+-|-+++
T Consensus 418 L~S~l~n~~af~~~~sy~~al~~~~~~~sss~qfq~i~~~~~~~~n~~s~~sst~~~~~~~l~rpi~~~~ss~~s~~~~l 497 (1112)
T KOG4269|consen 418 LASQLGNYLAFVDNESYLVALEMAEKCASSSPQFQCISEQLVVGVNKDSKDSSTWKDEEWLLYRPIDRVTSSTLSLHDLL 497 (1112)
T ss_pred hhhhcchhhhhhcchhhhhhcccccchhhcchhhhhhhhhheecccccccccCCccchhhhhccchhhhhHHHHHHHHHh
Confidence 55667789999999 777765555543 4667766554321 14566688999999999999999999
Q ss_pred hcc----CChh----------HHHHHHHHHHHhhHHHhHHHhh
Q psy13048 124 GEI----KGQG----------EIKDGLEVMLSVPRKANDALHL 152 (188)
Q Consensus 124 k~t----~d~~----------~l~~Al~~~~~v~~~iNe~~~~ 152 (188)
|++ +|+- .+++|++.....+..||+.+..
T Consensus 498 k~ppf~~pd~f~~~~~~i~~~Llrda~d~~~~~is~id~k~~~ 540 (1112)
T KOG4269|consen 498 KHPPFPHPDWFTNDSSVIQNELLRDALDISQNFISSIDEKIEP 540 (1112)
T ss_pred CCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHhhcccch
Confidence 998 5654 7899999999999999987654
No 20
>PF15601 Imm42: Immunity protein 42
Probab=51.37 E-value=20 Score=27.48 Aligned_cols=49 Identities=14% Similarity=0.283 Sum_probs=32.6
Q ss_pred HHHHHHHHhhCCCCCCcccccchhhhHHhhHHHHHHHHhccCChhHHHHHHHHHHHhhHH
Q psy13048 86 PLFEELQKKHRVDHPVSAYLIKPVQRITKYQLLLKDLQGEIKGQGEIKDGLEVMLSVPRK 145 (188)
Q Consensus 86 ~~f~~~~~~~~~~l~L~s~LikPVQRI~rY~LLLkeLlk~t~d~~~l~~Al~~~~~v~~~ 145 (188)
.||..+...++.. .-=+|||+|+.+|.+-.-.++++..|++.|..+-..
T Consensus 20 sFFsti~~~lE~~-----------~wGskfP~Lm~~LY~g~L~~~~~~~A~~eL~~I~~~ 68 (134)
T PF15601_consen 20 SFFSTISYRLENE-----------GWGSKFPLLMNELYRGYLRYEELEKALKELEEIRKE 68 (134)
T ss_pred HHHHHHHHHhhcc-----------CCCCcchHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 5676665554432 223599999999965444677888888887776443
No 21
>PF12407 Abdominal-A: Homeobox protein ; InterPro: IPR022132 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00046 from PFAM. This family is a homeobox protein involved in differentiation of embryonic cells to form the abdominal region.
Probab=34.56 E-value=19 Score=19.09 Aligned_cols=18 Identities=33% Similarity=0.490 Sum_probs=13.9
Q ss_pred CCccchHHHhhhHhhhHh
Q psy13048 41 HSKETNEEKRKSARKKEA 58 (188)
Q Consensus 41 ~~~~~~~~~r~~~r~~e~ 58 (188)
+.|+|||..|+.+..++.
T Consensus 4 avkeineqar~e~~Eqe~ 21 (24)
T PF12407_consen 4 AVKEINEQARREREEQEK 21 (24)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 458899999988776653
No 22
>PHA03044 IMV membrane protein; Provisional
Probab=22.46 E-value=2.1e+02 Score=19.66 Aligned_cols=32 Identities=19% Similarity=0.269 Sum_probs=23.5
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHhhHHHhHHH
Q psy13048 118 LLKDLQGEIKGQGEIKDGLEVMLSVPRKANDAL 150 (188)
Q Consensus 118 LLkeLlk~t~d~~~l~~Al~~~~~v~~~iNe~~ 150 (188)
||..|...+ +..+...++..|+++...||..+
T Consensus 14 lLt~Lsn~~-~d~efaAtls~ikElis~IN~ki 45 (74)
T PHA03044 14 LLTNLSNNS-DDSEFSATLSTIKEIISQINLKV 45 (74)
T ss_pred HHHHHHcCC-CChhHHHHHHHHHHHHHHHHHHH
Confidence 444444443 46678889999999999999865
No 23
>PHA01756 hypothetical protein
Probab=21.07 E-value=30 Score=28.51 Aligned_cols=16 Identities=38% Similarity=0.598 Sum_probs=13.6
Q ss_pred CCcccccchhhhHHhh
Q psy13048 100 PVSAYLIKPVQRITKY 115 (188)
Q Consensus 100 ~L~s~LikPVQRI~rY 115 (188)
+++|+|.+|+||++.-
T Consensus 7 SISsLLA~PFQRLTSs 22 (268)
T PHA01756 7 SISSLLASPFQRLTSS 22 (268)
T ss_pred hHHHHHhhHHHHHHHH
Confidence 5678999999999863
Done!