Query psy13048
Match_columns 188
No_of_seqs 211 out of 1094
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 18:07:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13048.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13048hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nty_A Triple functional domai 100.0 4.3E-28 1.5E-32 206.4 11.8 128 59-187 93-221 (311)
2 1kz7_A Guanine nucleotide exch 99.9 8.1E-26 2.8E-30 195.8 12.8 121 59-180 97-221 (353)
3 2rgn_B RHOA/RAC/CDC42 exchange 99.9 5.7E-26 2E-30 196.8 11.4 122 59-181 94-219 (354)
4 2vrw_B P95VAV, VAV1, proto-onc 99.9 6.5E-22 2.2E-26 173.8 10.8 121 59-180 104-245 (406)
5 2dfk_A Collybistin II; DH doma 99.9 1.9E-21 6.3E-26 171.2 13.1 122 59-180 125-268 (402)
6 1foe_A T-lymphoma invasion and 99.8 4.8E-22 1.7E-26 172.9 5.8 123 59-181 106-250 (377)
7 2pz1_A RHO guanine nucleotide 99.8 4.7E-21 1.6E-25 171.0 11.7 122 59-180 202-345 (466)
8 2z0q_A XPLN, RHO guanine nucle 99.8 4.3E-21 1.5E-25 165.0 8.7 122 59-180 101-243 (346)
9 1by1_A Protein (PIX); RHO-GTPa 99.8 1.7E-21 5.7E-26 157.2 4.2 94 59-153 95-197 (209)
10 3ky9_A Proto-oncogene VAV; cal 99.8 1.3E-20 4.4E-25 173.1 8.9 122 59-181 276-418 (587)
11 1xcg_A PDZ-rhogef, RHO guanine 99.8 4.4E-20 1.5E-24 159.7 9.9 118 62-179 112-263 (368)
12 3jv3_A Intersectin-1; SH3 doma 99.8 9.2E-20 3.1E-24 152.2 9.5 94 59-152 167-271 (283)
13 3t06_A PDZ-rhogef, RHO guanine 99.8 5.2E-20 1.8E-24 161.9 8.3 119 63-181 155-307 (418)
14 1txd_A RHO guanine nucleotide 99.8 4.6E-20 1.6E-24 160.8 7.7 120 61-180 115-268 (385)
15 3p6a_A RHO guanine nucleotide 99.8 1.5E-19 5.2E-24 156.7 10.4 117 64-181 121-271 (377)
16 3mpx_A FYVE, rhogef and PH dom 99.8 1.8E-19 6.2E-24 159.0 9.0 122 59-181 113-256 (434)
17 1dbh_A Protein (human SOS 1); 99.8 9.3E-20 3.2E-24 157.1 6.3 120 59-178 89-256 (354)
18 3odw_A RHO guanine nucleotide 99.8 1.6E-18 5.5E-23 157.9 11.3 117 64-181 274-424 (536)
19 3jzy_A Intersectin 2; C2 domai 99.7 4.9E-19 1.7E-23 158.6 0.0 93 59-151 112-215 (510)
20 3ksy_A SOS-1, SON of sevenless 99.7 1.7E-17 5.8E-22 161.3 6.7 120 62-181 291-456 (1049)
21 2lg1_A A-kinase anchor protein 85.6 0.033 1.1E-06 43.6 -3.9 54 127-182 8-84 (185)
22 1v61_A RAC/CDC42 guanine nucle 25.9 30 0.001 25.2 1.8 29 152-180 11-39 (132)
No 1
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Probab=99.95 E-value=4.3e-28 Score=206.35 Aligned_cols=128 Identities=63% Similarity=1.069 Sum_probs=120.7
Q ss_pred hhhhcccHHHHhcCHHHHHHHHHHhccHHHHHHHHhhCCCCCCcccccchhhhHHhhHHHHHHHHhcc-CChhHHHHHHH
Q psy13048 59 HAQKFNMYVHYCRNKPDSNALLVQHGGPLFEELQKKHRVDHPVSAYLIKPVQRITKYQLLLKDLQGEI-KGQGEIKDGLE 137 (188)
Q Consensus 59 ~~~~f~~Y~~Yc~n~~~a~~~l~~~~~~~f~~~~~~~~~~l~L~s~LikPVQRI~rY~LLLkeLlk~t-~d~~~l~~Al~ 137 (188)
|.+.|++|..||.||+.|..++.++...||++++...+.+++|.+||++||||||||||||++|+|+| +++.++++|++
T Consensus 93 ~~~~~~~Y~~Y~~n~~~a~~~l~~~~~~f~~~~~~~~~~~l~L~~~Li~PvQRi~rY~LLL~~llk~t~~~h~~l~~Al~ 172 (311)
T 1nty_A 93 WADKFQMYVTYCKNKPDSTQLILEHAGSYFDEIQQRHGLANSISSYLIKPVQRITKYQLLLKELLTCCEEGKGEIKDGLE 172 (311)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHTCSSCHHHHHTHHHHHHHHHHHHHHHHHHTSCTTCTTHHHHHH
T ss_pred HHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHhhhhHHHHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 78899999999999999999998877789999999888889999999999999999999999999999 88999999999
Q ss_pred HHHHhhHHHhHHHhhhhhcCCCCCCcccccCeeeeceeEEEcCCcccccC
Q psy13048 138 VMLSVPRKANDALHLSLLEAPADVNIDAMGEVVLQDALQVWDPKQLIRKE 187 (188)
Q Consensus 138 ~~~~v~~~iNe~~~~~~i~~~~~~~l~~~g~Ll~~g~f~V~~~k~lirkG 187 (188)
.|..++.++|+.++...+++ ++.++..+|+++++|.|.||+++.++++|
T Consensus 173 ~~~~v~~~~N~~~~~~~l~~-~~~~l~~~g~li~~~~~~~~~~~~~~~~~ 221 (311)
T 1nty_A 173 VMLSVPKRANDAMHLSMLEG-FDENIESQGELILQESFQVWDPKTLIRKG 221 (311)
T ss_dssp HHHHHHHHHHHHHHHTTEES-CCSCSGGGCCEEEEEEEEEECSSSSSCCE
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCCChHhcCCceeeeeEEEEcCccccccc
Confidence 99999999999999999999 88899999999999999999987776655
No 2
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A
Probab=99.93 E-value=8.1e-26 Score=195.81 Aligned_cols=121 Identities=37% Similarity=0.705 Sum_probs=113.9
Q ss_pred hhhhcccHHHHhcCHHHHHHHHHHhc-cHHHHHHHHhhCCCCCCcccccchhhhHHhhHHHHHHHHhcc---CChhHHHH
Q psy13048 59 HAQKFNMYVHYCRNKPDSNALLVQHG-GPLFEELQKKHRVDHPVSAYLIKPVQRITKYQLLLKDLQGEI---KGQGEIKD 134 (188)
Q Consensus 59 ~~~~f~~Y~~Yc~n~~~a~~~l~~~~-~~~f~~~~~~~~~~l~L~s~LikPVQRI~rY~LLLkeLlk~t---~d~~~l~~ 134 (188)
|.+.|++|..||.||+.|..++.+.. +.||++|+......++|.+||++|||||+||||||++|+|+| +|+.+++.
T Consensus 97 ~~~~f~~Y~~Y~~n~~~a~~~l~~~~~~~f~~~~~~~~~~~l~L~~~Li~PvQRi~rY~LLL~~llk~t~~~~d~~~L~~ 176 (353)
T 1kz7_A 97 RMEEFQIYEKYCQNKPRSESLWRQCSDCPFFQECQKKLDHKLSLDSYLLKPVQRITKYQLLLKEMLKYSKHCEGAEDLQE 176 (353)
T ss_dssp TTTGGGHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTCSSCHHHHHTHHHHHHHHHHHHHHHHHHTCTTSTTHHHHHH
T ss_pred hhHHHHHHHHHHhChHHHHHHHHHhhcchHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCccHHHHHH
Confidence 78899999999999999999998754 589999999888899999999999999999999999999999 68999999
Q ss_pred HHHHHHHhhHHHhHHHhhhhhcCCCCCCcccccCeeeeceeEEEcC
Q psy13048 135 GLEVMLSVPRKANDALHLSLLEAPADVNIDAMGEVVLQDALQVWDP 180 (188)
Q Consensus 135 Al~~~~~v~~~iNe~~~~~~i~~~~~~~l~~~g~Ll~~g~f~V~~~ 180 (188)
|++.|..++..||+.+++..|.+ ++++|...|+++++|.|.||.+
T Consensus 177 Al~~i~~v~~~iN~~~~~~~i~~-~~~~L~~~g~ll~~g~l~~~~~ 221 (353)
T 1kz7_A 177 ALSSILGILKAVNDSMHLIAITG-YDGNLGDLGKLLMQGSFSVWTD 221 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHTTEES-CCSCGGGGCCEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCCChhHhhhhheecceEEEec
Confidence 99999999999999999999999 7778999999999999999964
No 3
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Probab=99.93 E-value=5.7e-26 Score=196.80 Aligned_cols=122 Identities=38% Similarity=0.642 Sum_probs=115.2
Q ss_pred hhhhcccHHHHhcCHHHHHHHHHHhccHHHHHHHHhhCCCCCCcccccchhhhHHhhHHHHHHHHhcc----CChhHHHH
Q psy13048 59 HAQKFNMYVHYCRNKPDSNALLVQHGGPLFEELQKKHRVDHPVSAYLIKPVQRITKYQLLLKDLQGEI----KGQGEIKD 134 (188)
Q Consensus 59 ~~~~f~~Y~~Yc~n~~~a~~~l~~~~~~~f~~~~~~~~~~l~L~s~LikPVQRI~rY~LLLkeLlk~t----~d~~~l~~ 134 (188)
|.+.|++|..||.||+.|..++.+..+.+|++|++.....++|.+||++|||||+||||||++|+|+| +|+..++.
T Consensus 94 ~~~~f~~Y~~Y~~n~~~a~~~l~~~~~~~f~~~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~ 173 (354)
T 2rgn_B 94 HERRLHMYVVYCQNKPKSEHVVSEFGDSYFEELRQQLGHRLQLNDLLIKPVQRIMKYQLLLKDFLKYYNRAGMDTADLEQ 173 (354)
T ss_dssp TTTTTHHHHHHHHTSHHHHHHHTTTSHHHHHHHHHHHCCSSCHHHHTTHHHHHHTSHHHHHHHHHHHTSSSCSCHHHHHH
T ss_pred hHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHhhhHHHHHhHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 88899999999999999999998887789999999888899999999999999999999999999999 58999999
Q ss_pred HHHHHHHhhHHHhHHHhhhhhcCCCCCCcccccCeeeeceeEEEcCC
Q psy13048 135 GLEVMLSVPRKANDALHLSLLEAPADVNIDAMGEVVLQDALQVWDPK 181 (188)
Q Consensus 135 Al~~~~~v~~~iNe~~~~~~i~~~~~~~l~~~g~Ll~~g~f~V~~~k 181 (188)
|++.|..++.+||+++++..|++ ++.++..+|+|+.+|.|.||++.
T Consensus 174 Al~~i~~v~~~in~~~~~~~i~~-~~~~l~~~~~Ll~~g~~~v~~~~ 219 (354)
T 2rgn_B 174 AVEVMCFVPKRCNDMMTLGRLRG-FEGKLTAQGKLLGQDTFWVTEPE 219 (354)
T ss_dssp HHHHHHHHHHHHHHHHHGGGCBS-CCSCSTTSCCEEEEEEEEEECC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-ChhhhhhhccccccceEEEEcCC
Confidence 99999999999999999999999 77789999999999999999864
No 4
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=99.86 E-value=6.5e-22 Score=173.77 Aligned_cols=121 Identities=21% Similarity=0.348 Sum_probs=103.2
Q ss_pred hhhhcccHHHHhcCHHHHHHHHHHhc--cHH----HHHHHHh-hCCCCCCcccccchhhhHHhhHHHHHHHHhcc---CC
Q psy13048 59 HAQKFNMYVHYCRNKPDSNALLVQHG--GPL----FEELQKK-HRVDHPVSAYLIKPVQRITKYQLLLKDLQGEI---KG 128 (188)
Q Consensus 59 ~~~~f~~Y~~Yc~n~~~a~~~l~~~~--~~~----f~~~~~~-~~~~l~L~s~LikPVQRI~rY~LLLkeLlk~t---~d 128 (188)
|.+.|++|..||.||+.|..++.+.. ++. ++++... ....++|.+||++|||||+||||||++|+|+| +|
T Consensus 104 ~~~~~~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~~l~~~~~~~~~~~l~L~~~Li~PvQRi~rY~LLL~~llk~t~~~~d 183 (406)
T 2vrw_B 104 YKERFLVYGRYCSQVESASKHLDQVATAREDVQMKLEECSQRANNGRFTLRDLLMVPMQRVLKYHLLLQELVKHTQDATE 183 (406)
T ss_dssp HTTGGGHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTSCCHHHHTTHHHHHHTTHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHhhccccCCcchHHHhhhHHHHHhhHHHHHHHHHHhCCCChh
Confidence 78899999999999999999997642 334 4444433 34679999999999999999999999999999 57
Q ss_pred hhHHHHHHHHHHHhhHHHhHHHh-----------hhhhcCCCCCCcccccCeeeeceeEEEcC
Q psy13048 129 QGEIKDGLEVMLSVPRKANDALH-----------LSLLEAPADVNIDAMGEVVLQDALQVWDP 180 (188)
Q Consensus 129 ~~~l~~Al~~~~~v~~~iNe~~~-----------~~~i~~~~~~~l~~~g~Ll~~g~f~V~~~ 180 (188)
+..++.|++.|..++..||+.++ +..|++ ++.++...|+++++|.+.++.+
T Consensus 184 ~~~l~~Al~~i~~v~~~iNe~~r~~e~~~~l~~lq~~i~~-~~~~l~~~grli~~G~l~~~~~ 245 (406)
T 2vrw_B 184 KENLRLALDAMRDLAQCVNEVKRDNETLRQITNFQLSIEN-LDQSLANYGRPKIDGELKITSV 245 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEES-CSSCGGGGCSEEEEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCccccccCcccccccEEEEec
Confidence 88999999999999999999875 256778 6677889999999999999864
No 5
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1
Probab=99.86 E-value=1.9e-21 Score=171.16 Aligned_cols=122 Identities=24% Similarity=0.342 Sum_probs=102.8
Q ss_pred hhhhcccHHHHhcCHHHHHHHHHHhc-----cHHHHHHHHhh-CCCCCCcccccchhhhHHhhHHHHHHHHhcc----CC
Q psy13048 59 HAQKFNMYVHYCRNKPDSNALLVQHG-----GPLFEELQKKH-RVDHPVSAYLIKPVQRITKYQLLLKDLQGEI----KG 128 (188)
Q Consensus 59 ~~~~f~~Y~~Yc~n~~~a~~~l~~~~-----~~~f~~~~~~~-~~~l~L~s~LikPVQRI~rY~LLLkeLlk~t----~d 128 (188)
|.+.|++|..||.||+.|...+.+.. ..|++.|.... ...++|.+||++|||||+||||||++|+|+| +|
T Consensus 125 ~~~~f~~Y~~Y~~n~~~a~~~l~~~~~~~~f~~fl~~~~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~Llk~t~~~~~d 204 (402)
T 2dfk_A 125 HQDGFWIYSEYCNNHLDACMELSKLMKDSRYQHFFEACRLLQQMIDIAIDGFLLTPVQKICKYPLQLAELLKYTAQDHSD 204 (402)
T ss_dssp TTTGGGHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHTTCCSCCHHHHHTHHHHHHHHHHHHHHHHHHTSCTTSTT
T ss_pred HHhhhHHHHHHHHhhHHHHHHHHHHHcChHHHHHHHHHHhhhhcccCCHHHHHhHHHHHHHHHHHHHHHHHhhCCCCCcC
Confidence 77889999999999999999997642 25666665543 3469999999999999999999999999999 58
Q ss_pred hhHHHHHHHHHHHhhHHHhHHHh-----------hhhhcCCCCCCc-ccccCeeeeceeEEEcC
Q psy13048 129 QGEIKDGLEVMLSVPRKANDALH-----------LSLLEAPADVNI-DAMGEVVLQDALQVWDP 180 (188)
Q Consensus 129 ~~~l~~Al~~~~~v~~~iNe~~~-----------~~~i~~~~~~~l-~~~g~Ll~~g~f~V~~~ 180 (188)
+..++.|++.|..++..||+.++ +..|.||.+.++ ...|+||++|.+.++.+
T Consensus 205 ~~~L~~Al~~i~~v~~~iNe~~r~~e~~~~l~~lq~~i~~~~~~~l~~~~r~Li~~G~l~~~~~ 268 (402)
T 2dfk_A 205 YRYVAAALAVMRNVTQQINERKRRLENIDKIAQWQASVLDWEGDDILDRSSELIYTGEMAWIYQ 268 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSBTCCSSCGGGTCCCEEEEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccceEEeceEEEEec
Confidence 89999999999999999999875 245678655554 56789999999998865
No 6
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1
Probab=99.85 E-value=4.8e-22 Score=172.90 Aligned_cols=123 Identities=23% Similarity=0.437 Sum_probs=97.7
Q ss_pred hhhhcccHHHHhcCHHHHHHHHHHh-ccHHHHHHHHhh----CCCCCCcccccchhhhHHhhHHHHHHHHhcc----CCh
Q psy13048 59 HAQKFNMYVHYCRNKPDSNALLVQH-GGPLFEELQKKH----RVDHPVSAYLIKPVQRITKYQLLLKDLQGEI----KGQ 129 (188)
Q Consensus 59 ~~~~f~~Y~~Yc~n~~~a~~~l~~~-~~~~f~~~~~~~----~~~l~L~s~LikPVQRI~rY~LLLkeLlk~t----~d~ 129 (188)
|++.|++|..||.||+.|..++.+. .++.|..+.+.. ...++|.+||++|||||+||||||++|+|+| +|+
T Consensus 106 ~~~~f~~Y~~Y~~n~~~a~~~l~~~~~~~~f~~fl~~~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~ 185 (377)
T 1foe_A 106 YADRFKLYSAFCASHTKVPKVLVKAKTDTAFKAFLDAQNPRQQHSSTLESYLIKPIQRVLKYPLLLRELFALTDAESEEH 185 (377)
T ss_dssp HTTGGGGHHHHHHHTTTHHHHHTTTTTCHHHHHHHHHHCTTCCGGGSHHHHTTHHHHHHTTHHHHHHHHHHTSCTTSHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHhhccccCcCHHHHhccchhhhccHHHHHHHHHHhCCCCChhH
Confidence 7889999999999999999998664 245555555443 3459999999999999999999999999999 367
Q ss_pred hHHHHHHHHHHHhhHHHhHHHhhh------------hhcCC-CCCCcccccCeeeeceeEEEcCC
Q psy13048 130 GEIKDGLEVMLSVPRKANDALHLS------------LLEAP-ADVNIDAMGEVVLQDALQVWDPK 181 (188)
Q Consensus 130 ~~l~~Al~~~~~v~~~iNe~~~~~------------~i~~~-~~~~l~~~g~Ll~~g~f~V~~~k 181 (188)
..++.|++.|..++..||+.++.. .+.+| .+......|+++++|.|.++.+.
T Consensus 186 ~~l~~Al~~~~~v~~~iNe~~r~~e~~~~~~~~l~~~~~~~~~~~~~~~~g~ll~~~~~~~~~~~ 250 (377)
T 1foe_A 186 YHLDVAIKTMNKVASHINEMQKIHEEFGAVFDQLIAEQTGEKKEVADLSMGDLLLHTSVIWLNPP 250 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSCSSCCCCGGGEEEEEEEEESSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCccceeeecceeeccCc
Confidence 889999999999999999998631 12231 22223468999999999877643
No 7
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Probab=99.84 E-value=4.7e-21 Score=171.03 Aligned_cols=122 Identities=24% Similarity=0.389 Sum_probs=102.8
Q ss_pred hhhhcccHHHHhcCHHHHHHHHHHhc-----cHHHHHHHHhh-CCCCCCcccccchhhhHHhhHHHHHHHHhcc----CC
Q psy13048 59 HAQKFNMYVHYCRNKPDSNALLVQHG-----GPLFEELQKKH-RVDHPVSAYLIKPVQRITKYQLLLKDLQGEI----KG 128 (188)
Q Consensus 59 ~~~~f~~Y~~Yc~n~~~a~~~l~~~~-----~~~f~~~~~~~-~~~l~L~s~LikPVQRI~rY~LLLkeLlk~t----~d 128 (188)
|.+.|++|..||.||+.|...+.+.. ..|++.|.... ...++|.+||++|||||+||||||++|+|+| +|
T Consensus 202 ~~~~f~~Y~~Y~~n~~~a~~~l~~~~~~~~f~~f~~~~~~~~~~~~l~L~~~Li~PvQRi~rY~LLL~~llk~t~~~~~d 281 (466)
T 2pz1_A 202 HQADFQIYSEYCNNHPNACVELSRLTKLSKYVYFFEACRLLQKMIDISLDGFLLTPVQKICKYPLQLAELLKYTHPQHRD 281 (466)
T ss_dssp THHHHTTHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTSCTTSTT
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHhccHHHHHHHHHHHhhhhccCCHHHHhhhHHHHhhhHHHHHHHHHhcCCCCCcC
Confidence 77889999999999999999987642 25667766543 3469999999999999999999999999999 58
Q ss_pred hhHHHHHHHHHHHhhHHHhHHHh-----------hhhhcCCCCCCc-ccccCeeeeceeEEEcC
Q psy13048 129 QGEIKDGLEVMLSVPRKANDALH-----------LSLLEAPADVNI-DAMGEVVLQDALQVWDP 180 (188)
Q Consensus 129 ~~~l~~Al~~~~~v~~~iNe~~~-----------~~~i~~~~~~~l-~~~g~Ll~~g~f~V~~~ 180 (188)
+..++.|++.|+.++..||+.++ +..|.+|.+.++ ...++||++|.+.++.+
T Consensus 282 ~~~l~~Al~~i~~v~~~iNe~~r~~e~~~~l~~lq~~i~~~~~~~l~~~~r~li~~G~l~~~~~ 345 (466)
T 2pz1_A 282 FKDVEAALHAMKNVAQLINERKRRLENIDKIAQWQSSIEDWEGEDLLVRSSELIYSGELTRVTQ 345 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSBTCCSSCHHHHCSCEEEEEEEEEECT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccceeEEeeeEEEEec
Confidence 89999999999999999999875 246778666555 46789999999988765
No 8
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Probab=99.84 E-value=4.3e-21 Score=164.99 Aligned_cols=122 Identities=16% Similarity=0.227 Sum_probs=89.8
Q ss_pred hhhhcccHHHHhcCHHHHHHHHHHhc-c----HHHHHHHHh-hCCCCCCcccccchhhhHHhhHHHHHHHHhcc----CC
Q psy13048 59 HAQKFNMYVHYCRNKPDSNALLVQHG-G----PLFEELQKK-HRVDHPVSAYLIKPVQRITKYQLLLKDLQGEI----KG 128 (188)
Q Consensus 59 ~~~~f~~Y~~Yc~n~~~a~~~l~~~~-~----~~f~~~~~~-~~~~l~L~s~LikPVQRI~rY~LLLkeLlk~t----~d 128 (188)
|.+.|++|..||.||+.|..++.+.. + .|++.|... ....++|.+||++|||||+||||||++|+|+| +|
T Consensus 101 ~~~~~~~Y~~Y~~n~~~a~~~l~~~~~~~~f~~fl~~~~~~~~~~~l~L~~~L~~PvQRi~rY~LLL~~llk~t~~~~~d 180 (346)
T 2z0q_A 101 WLPCLSSYDSYCSNQVAAKALLDHKKQDHRVQDFLQRCLESPFSRKLDLWNFLDIPRSRLVKYPLLLREILRHTPNDNPD 180 (346)
T ss_dssp HGGGGGHHHHHHHHHHHHHHHHHHHTTCHHHHCC-------------CTTTGGGHHHHHHHHHHHHHHHHHHTSCTTSTH
T ss_pred HhhHHHHHHHHHHCHHHHHHHHHHhhcCHHHHHHHHHHHhCccCCCCCHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCcc
Confidence 78899999999999999999998753 3 345555443 34569999999999999999999999999999 47
Q ss_pred hhHHHHHHHHHHHhhHHHhHHHhhh-------hhcC---CCCCCcc-cccCeeeeceeEEEcC
Q psy13048 129 QGEIKDGLEVMLSVPRKANDALHLS-------LLEA---PADVNID-AMGEVVLQDALQVWDP 180 (188)
Q Consensus 129 ~~~l~~Al~~~~~v~~~iNe~~~~~-------~i~~---~~~~~l~-~~g~Ll~~g~f~V~~~ 180 (188)
+..++.|++.|+.++..||+.++.. .|.. +.+.++. ..+.|+++|.+.+..|
T Consensus 181 ~~~l~~A~~~~~~v~~~iN~~~~~~e~~~~~~~l~~~~~~~~~~l~~~~r~li~~G~l~~~~~ 243 (346)
T 2z0q_A 181 QQHLEEAINIIQGIVAEINTKTGESECRYYKERLLYLEEGQKDSLIDSSRVLCCHGELKNNRG 243 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCSTTCCCHHHHTCCCEEEEEEEEETTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccCCeEEEEeceeEECCC
Confidence 8899999999999999999998742 2322 1233333 4456899998876443
No 9
>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR {Homo sapiens} SCOP: a.87.1.1
Probab=99.83 E-value=1.7e-21 Score=157.22 Aligned_cols=94 Identities=20% Similarity=0.412 Sum_probs=81.1
Q ss_pred hhhhcc-cHHHHhcCHHHHHHHHHHhccHHHHHHHHh----hCCCCCCcccccchhhhHHhhHHHHHHHHhcc----CCh
Q psy13048 59 HAQKFN-MYVHYCRNKPDSNALLVQHGGPLFEELQKK----HRVDHPVSAYLIKPVQRITKYQLLLKDLQGEI----KGQ 129 (188)
Q Consensus 59 ~~~~f~-~Y~~Yc~n~~~a~~~l~~~~~~~f~~~~~~----~~~~l~L~s~LikPVQRI~rY~LLLkeLlk~t----~d~ 129 (188)
|.+.|. +|..||.||+.|..++.+.. +.|..+.+. ....++|.+||++||||||||||||++|+|+| +|+
T Consensus 95 ~~~~f~~~Y~~Y~~n~~~a~~~l~~~~-~~f~~fl~~~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~Llk~t~~~h~d~ 173 (209)
T 1by1_A 95 LMPQMKTLYLTYCANHPSAVNVLTEHS-EELGEFMETKGASSPGILVLTTGLSKPFMRLDKYPTLLKELERHMEDYHTDR 173 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-TTHHHHTTTTCCCSSTTTHHHHHTTSTTTGGGTHHHHHHHHHHSSCCCSSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHHHHHHHhcCCCCCcCCHHHHhhHHHHHHhHHHHHHHHHHhhCCCCCccH
Confidence 788996 99999999999999998873 334444333 33459999999999999999999999999999 589
Q ss_pred hHHHHHHHHHHHhhHHHhHHHhhh
Q psy13048 130 GEIKDGLEVMLSVPRKANDALHLS 153 (188)
Q Consensus 130 ~~l~~Al~~~~~v~~~iNe~~~~~ 153 (188)
..++.|++.|+.++..||+.++..
T Consensus 174 ~~l~~Al~~i~~v~~~iNe~~r~~ 197 (209)
T 1by1_A 174 QDIQKSMAAFKNLSAQCQEVRKRK 197 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998764
No 10
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=99.82 E-value=1.3e-20 Score=173.07 Aligned_cols=122 Identities=20% Similarity=0.345 Sum_probs=104.5
Q ss_pred hhhhcccHHHHhcCHHHHHHHHHHh--ccH----HHHHHHHh-hCCCCCCcccccchhhhHHhhHHHHHHHHhcc---CC
Q psy13048 59 HAQKFNMYVHYCRNKPDSNALLVQH--GGP----LFEELQKK-HRVDHPVSAYLIKPVQRITKYQLLLKDLQGEI---KG 128 (188)
Q Consensus 59 ~~~~f~~Y~~Yc~n~~~a~~~l~~~--~~~----~f~~~~~~-~~~~l~L~s~LikPVQRI~rY~LLLkeLlk~t---~d 128 (188)
|.+.|++|..||.||+.|..++.+. .++ |++++... ....++|.+||++|||||+||||||++|+|+| +|
T Consensus 276 ~~~~f~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~~l~~~~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~Llk~T~~~~d 355 (587)
T 3ky9_A 276 YKERFLVYGRYCSQVESASKHLDRVAAAREDVQMKLEECSQRANNGRFTLRDLLMVPMQRVLKYHLLLQELVKHTQEAME 355 (587)
T ss_dssp TTTGGGHHHHHHHHHHHHHHHHHHHHHTCHHHHTTTTHHHHHHHSSSCCHHHHHHHHHHHHTTHHHHHHHHHHTCCCHHH
T ss_pred HHHhcchHHHHHhChHHHHHHHHHHHhcCHHHHHHHHHHHhccccCCCCHHHHHhHHHHHHHHHHHHHHHHHhcCCCchh
Confidence 7889999999999999999999764 233 44455544 34679999999999999999999999999999 57
Q ss_pred hhHHHHHHHHHHHhhHHHhHHHh-----------hhhhcCCCCCCcccccCeeeeceeEEEcCC
Q psy13048 129 QGEIKDGLEVMLSVPRKANDALH-----------LSLLEAPADVNIDAMGEVVLQDALQVWDPK 181 (188)
Q Consensus 129 ~~~l~~Al~~~~~v~~~iNe~~~-----------~~~i~~~~~~~l~~~g~Ll~~g~f~V~~~k 181 (188)
+..++.|++.|+.++..||+.++ +..|++ ++.++...|+++++|.+.++.+.
T Consensus 356 ~~~L~~Al~~i~~v~~~iNe~~r~~e~~~~l~~lq~~i~~-~~~~l~~~grll~~G~l~~~~~~ 418 (587)
T 3ky9_A 356 KENLRLALDAMRDLAQCVNEVKRDNETLRQITNFQLSIEN-LDQSLAHYGRPKIDGELKITSVE 418 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEET-CCSCGGGGCCEEEEEEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CccchhhcCceEEEeeEEEEecc
Confidence 88999999999999999999875 256778 67789999999999999998654
No 11
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*
Probab=99.81 E-value=4.4e-20 Score=159.73 Aligned_cols=118 Identities=15% Similarity=0.214 Sum_probs=91.5
Q ss_pred hcccHHHHhcCHHHHHHHHHHhc--cHHHHHHHHh----h-CCCCCCcccccchhhhHHhhHHHHHHHHhcc----CChh
Q psy13048 62 KFNMYVHYCRNKPDSNALLVQHG--GPLFEELQKK----H-RVDHPVSAYLIKPVQRITKYQLLLKDLQGEI----KGQG 130 (188)
Q Consensus 62 ~f~~Y~~Yc~n~~~a~~~l~~~~--~~~f~~~~~~----~-~~~l~L~s~LikPVQRI~rY~LLLkeLlk~t----~d~~ 130 (188)
.|.+|..||.|++.|..++.+.. ++.|..+.+. . ...++|.+||++|||||+||||||++|+|+| +|+.
T Consensus 112 ~~~~Y~~Y~~~~~~a~~~l~~~~~~~~~f~~fl~~~~~~~~~~~l~L~~~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~ 191 (368)
T 1xcg_A 112 LQQVAAQFCSYQSIALELIKTKQRKESRFQLFMQEAESHPQCRRLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEHE 191 (368)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHCHHHHHHHHHHHTSGGGTTCCHHHHTTHHHHHHHHHHHHHHHHHHTSCTTSHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhCCHHHHHHHHHHHhChhhccCChHHHhhhHhhhhhhHHHHHHHHHHhCCCCChhHH
Confidence 46899999999999999997642 4455544433 2 3569999999999999999999999999999 3678
Q ss_pred HHHHHHHHHHHhhHHHhHHHhh-----------hhhcCC----CCC-------Cc-ccccCeeeeceeEEEc
Q psy13048 131 EIKDGLEVMLSVPRKANDALHL-----------SLLEAP----ADV-------NI-DAMGEVVLQDALQVWD 179 (188)
Q Consensus 131 ~l~~Al~~~~~v~~~iNe~~~~-----------~~i~~~----~~~-------~l-~~~g~Ll~~g~f~V~~ 179 (188)
.++.|++.|..++..||+.++. ..|.+| +.. ++ ...|+|+++|.+.+..
T Consensus 192 ~l~~A~~~~~~v~~~vN~~~~~~e~~~~l~~i~~~l~~~~~~~~~~pl~~~~~~l~~~~R~li~~G~l~~~~ 263 (368)
T 1xcg_A 192 KLCRARDQCREILKYVNEAVKQTENRHRLEGYQKRLDATALERASNPLAAEFKSLDLTTRKMIHEGPLTWRI 263 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHSCSCTTTGGGGGCCGGGSCEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhcccchhhhhhhcccccceEEeecceEeee
Confidence 9999999999999999998762 223321 111 22 2457899999998543
No 12
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A
Probab=99.80 E-value=9.2e-20 Score=152.22 Aligned_cols=94 Identities=24% Similarity=0.524 Sum_probs=83.1
Q ss_pred hhhhcccHHHHhcCHHHHHHHHHHh--ccHHHHHHHHhhC-----CCCCCcccccchhhhHHhhHHHHHHHHhcc----C
Q psy13048 59 HAQKFNMYVHYCRNKPDSNALLVQH--GGPLFEELQKKHR-----VDHPVSAYLIKPVQRITKYQLLLKDLQGEI----K 127 (188)
Q Consensus 59 ~~~~f~~Y~~Yc~n~~~a~~~l~~~--~~~~f~~~~~~~~-----~~l~L~s~LikPVQRI~rY~LLLkeLlk~t----~ 127 (188)
+.+.|++|..||.|++.|..++.+. .++.|..+.+... .+++|.+||++|||||+||||||++|+|+| +
T Consensus 167 ~~~~~~~Y~~Y~~~~~~a~~~l~~~~~~~~~f~~~l~~~~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~ 246 (283)
T 3jv3_A 167 QLPHMQPYIRFCSCQLNGAALIQQKTDEAPDFKEFVKRLAMDPRCKGMPLSSFILKPMQRVTRYPLIIKNILENTPENHP 246 (283)
T ss_dssp HGGGGTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTTSGGGTTCCHHHHTTHHHHHHHHHHHHHHHHHTTSCTTST
T ss_pred HHhhchhHHHHHcCHHHHHHHHHHHHhcCHHHHHHHHHHHhCccccCCCHHHHhhhhHHHhcchHHHHHHHHhcCCCCCc
Confidence 7788999999999999999999764 3467777766543 349999999999999999999999999999 5
Q ss_pred ChhHHHHHHHHHHHhhHHHhHHHhh
Q psy13048 128 GQGEIKDGLEVMLSVPRKANDALHL 152 (188)
Q Consensus 128 d~~~l~~Al~~~~~v~~~iNe~~~~ 152 (188)
|+..++.|++.|+.++..||+.++.
T Consensus 247 d~~~l~~A~~~i~~v~~~iNe~~r~ 271 (283)
T 3jv3_A 247 DHSHLKHALEKAEELCSQVNEGVRE 271 (283)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 8899999999999999999999874
No 13
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}
Probab=99.80 E-value=5.2e-20 Score=161.90 Aligned_cols=119 Identities=16% Similarity=0.197 Sum_probs=93.4
Q ss_pred cccHHHHhcCHHHHHHHHHHh--ccHHHHHHHHhhC-----CCCCCcccccchhhhHHhhHHHHHHHHhcc----CChhH
Q psy13048 63 FNMYVHYCRNKPDSNALLVQH--GGPLFEELQKKHR-----VDHPVSAYLIKPVQRITKYQLLLKDLQGEI----KGQGE 131 (188)
Q Consensus 63 f~~Y~~Yc~n~~~a~~~l~~~--~~~~f~~~~~~~~-----~~l~L~s~LikPVQRI~rY~LLLkeLlk~t----~d~~~ 131 (188)
|++|..||.||+.|..++.+. .++.|..+.+... ..++|.+||++|||||+||||||++|+|+| +|+..
T Consensus 155 ~~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~fl~~~~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~ 234 (418)
T 3t06_A 155 QQVAAQFCSYQSIALELIKTKQRKESRFQLFMQEAESHPQCRRLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEHEK 234 (418)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHCHHHHHHHHHHTTSGGGTTCCHHHHTTHHHHHHHHHHHHHHHHHHTSCTTSHHHHH
T ss_pred hhhhHHHhhhHHHHHHHHHHHHhcCHHHHHHHHHHHhCcccccCCHHHHHhhHHHHHHHHHHHHHHHHHhCCCCChhHHH
Confidence 379999999999999999774 2455665555433 469999999999999999999999999999 36889
Q ss_pred HHHHHHHHHHhhHHHhHHHhh-----------hhhcCCCC------------CCcccccCeeeeceeEEEcCC
Q psy13048 132 IKDGLEVMLSVPRKANDALHL-----------SLLEAPAD------------VNIDAMGEVVLQDALQVWDPK 181 (188)
Q Consensus 132 l~~Al~~~~~v~~~iNe~~~~-----------~~i~~~~~------------~~l~~~g~Ll~~g~f~V~~~k 181 (188)
++.|++.|+.++..||+.++. ..|.+|-. .-....++||++|.+++..++
T Consensus 235 L~~A~~~i~~v~~~iN~~~~~~e~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~~r~li~eG~l~~~~~~ 307 (418)
T 3t06_A 235 LCRARDQCREILKYVNEAVKQTENRHRLEGYQKRLDATALERASNPLAAEFKSLDLTTRKMIHEGPLTWRISK 307 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEECCTTSSCSCTTTTTTSSCCGGGSCEEEEEEEEECCBT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccccccchhhcccccccceeEEeceEEEEeCC
Confidence 999999999999999998863 23333211 111235789999999877644
No 14
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Probab=99.80 E-value=4.6e-20 Score=160.81 Aligned_cols=120 Identities=16% Similarity=0.225 Sum_probs=91.6
Q ss_pred hhc-ccHHHHhcCHHHHHHHHHHh--ccHHHH----HHHHh-hCCCCCCcccccchhhhHHhhHHHHHHHHhcc---CCh
Q psy13048 61 QKF-NMYVHYCRNKPDSNALLVQH--GGPLFE----ELQKK-HRVDHPVSAYLIKPVQRITKYQLLLKDLQGEI---KGQ 129 (188)
Q Consensus 61 ~~f-~~Y~~Yc~n~~~a~~~l~~~--~~~~f~----~~~~~-~~~~l~L~s~LikPVQRI~rY~LLLkeLlk~t---~d~ 129 (188)
+.| ++|..||.||+.|..++.+. .++.|. .|... ....++|.+||++|||||+||||||++|+|+| +|+
T Consensus 115 ~~f~~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~fl~~~~~~~~~~~l~L~~~Li~PvQRi~rY~LLL~~llk~t~~~~d~ 194 (385)
T 1txd_A 115 EKLKHAAATFCSNQPFALEMIKSRQKKDSRFQTFVQDAESNPLCRRLQLKDIIPTQMQRLTKYPLLLDNIAKYTEWPTER 194 (385)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHCHHHHHHHHHHHHSGGGTTCCHHHHTTHHHHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred HHHHHHHHHHHHchHHHHHHHHHHHhcCHHHHHHHHHHHhCccccCCChHHHhhhHHhHhhhHHHHHHHHHhhCCCChhH
Confidence 356 89999999999999999764 244444 44433 33569999999999999999999999999999 478
Q ss_pred hHHHHHHHHHHHhhHHHhHHHhh-----------hhhcC--C---CCC------Cc-ccccCeeeeceeEEEcC
Q psy13048 130 GEIKDGLEVMLSVPRKANDALHL-----------SLLEA--P---ADV------NI-DAMGEVVLQDALQVWDP 180 (188)
Q Consensus 130 ~~l~~Al~~~~~v~~~iNe~~~~-----------~~i~~--~---~~~------~l-~~~g~Ll~~g~f~V~~~ 180 (188)
..++.|++.|+.++..||+.++. ..|.+ | ... ++ ...++||++|.+.+...
T Consensus 195 ~~l~~Al~~i~~v~~~iN~~~~~~e~~~~l~~i~~~l~~~~~~~~~~p~~~~~~~l~~~~R~li~eG~l~~~~~ 268 (385)
T 1txd_A 195 EKVKKAADHCRQILNFVNQAVKEAENKQRLEDYQRRLDTSSLKLSEYPNVEELRNLDLTKRKMIHEGPLVWKVN 268 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCC-------CHHHHTCCGGGSCEEEEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhcccccccchhhhhhcccccceEEEECcEEEEcC
Confidence 89999999999999999998762 22321 0 001 11 13478999999986543
No 15
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A
Probab=99.80 E-value=1.5e-19 Score=156.66 Aligned_cols=117 Identities=17% Similarity=0.235 Sum_probs=93.4
Q ss_pred ccHHHHhcCHHHHHHHHHHh--ccHHHHHHHHhh-----CCCCCCcccccchhhhHHhhHHHHHHHHhcc---CChhHHH
Q psy13048 64 NMYVHYCRNKPDSNALLVQH--GGPLFEELQKKH-----RVDHPVSAYLIKPVQRITKYQLLLKDLQGEI---KGQGEIK 133 (188)
Q Consensus 64 ~~Y~~Yc~n~~~a~~~l~~~--~~~~f~~~~~~~-----~~~l~L~s~LikPVQRI~rY~LLLkeLlk~t---~d~~~l~ 133 (188)
++|..||.||+.|..++.+. .++.|..+.+.. ..+++|.+||++|||||+||||||++|+|+| +|+..++
T Consensus 121 ~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~~l~~~~~~~~~~~l~L~~~Li~PvQRi~rY~LLL~~llk~t~~~~d~~~l~ 200 (377)
T 3p6a_A 121 KISSRFCSRQSFALEQLKAKQRKDPRFCAFVQEAESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNTEEPTEREKVE 200 (377)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHCHHHHHHHHHHHTSGGGTTCCHHHHTTHHHHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHhhhHHHHHHHHHhhCCCcccHHHHH
Confidence 79999999999999999764 345555554432 3469999999999999999999999999999 5788999
Q ss_pred HHHHHHHHhhHHHhHHHhh-----------hhh-------------cCCCCCCcccccCeeeeceeEEEcCC
Q psy13048 134 DGLEVMLSVPRKANDALHL-----------SLL-------------EAPADVNIDAMGEVVLQDALQVWDPK 181 (188)
Q Consensus 134 ~Al~~~~~v~~~iNe~~~~-----------~~i-------------~~~~~~~l~~~g~Ll~~g~f~V~~~k 181 (188)
.|++.|+.++..||+.++. ..| .+|.+.++ ..++||++|.+++..++
T Consensus 201 ~A~~~i~~v~~~in~~~~~~e~~~~l~~iq~~l~~~~~~~~~~~~~~~~~~l~~-~~r~li~eG~l~~~~~~ 271 (377)
T 3p6a_A 201 LAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLRQSSDPMLSEFKNLDI-TKKKLVHEGPLTWRVTK 271 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHCCCGGGSSSTTCCC-TTSCEEEEEEEEEESSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccchhhhhccccc-ccceEEEECCcEEEecC
Confidence 9999999999999998852 122 24443333 34789999999877554
No 16
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=1.8e-19 Score=159.00 Aligned_cols=122 Identities=18% Similarity=0.222 Sum_probs=94.1
Q ss_pred hhhhcccHHHHhcCHHHHHHHHHHh--ccHHHHHHHHhh-----CCCCCCcccccchhhhHHhhHHHHHHHHhcc----C
Q psy13048 59 HAQKFNMYVHYCRNKPDSNALLVQH--GGPLFEELQKKH-----RVDHPVSAYLIKPVQRITKYQLLLKDLQGEI----K 127 (188)
Q Consensus 59 ~~~~f~~Y~~Yc~n~~~a~~~l~~~--~~~~f~~~~~~~-----~~~l~L~s~LikPVQRI~rY~LLLkeLlk~t----~ 127 (188)
|.+.|++|..||.||+.|..++.+. .++.|..+.+.. ...++|.+||++|||||+||||||++|+|+| +
T Consensus 113 ~~~~~~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~~l~~~~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~ 192 (434)
T 3mpx_A 113 REQGFDHHATHILQFDRYLGLLSENCLHSPRLAAAVREFEQSVQGGSQTAKHRLLRVVQRLFQYQVLLTDYLNNLCPDSA 192 (434)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTC------CHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSH
T ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHcCcccCCCCHHHHHhhhHHhhhHHHHHHHHHHhcCCCCCc
Confidence 7888999999999999999999773 345555444432 2469999999999999999999999999999 4
Q ss_pred ChhHHHHHHHHHHHhhHHHhHHHhh-----------hhhcCCCCCCcccccCeeeeceeEEEcCC
Q psy13048 128 GQGEIKDGLEVMLSVPRKANDALHL-----------SLLEAPADVNIDAMGEVVLQDALQVWDPK 181 (188)
Q Consensus 128 d~~~l~~Al~~~~~v~~~iNe~~~~-----------~~i~~~~~~~l~~~g~Ll~~g~f~V~~~k 181 (188)
|+..++.|++.|..++..||+.++. ..|.+| +.-+...+.|+..|.+....++
T Consensus 193 d~~~l~~Al~~i~~v~~~iN~~~~~~e~~~~l~~l~~~i~~~-~~l~~~~r~li~~g~l~~~~~~ 256 (434)
T 3mpx_A 193 EYDNTQGALSLISKVTDRANDSMEQGENLQKLVHIEHSVRGQ-GDLLQPGREFLKEGTLMKVTGK 256 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHEETC-CCCCCTTCCEEECCEEEEEETT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-cccccCCcceEecceEEEEeCC
Confidence 6789999999999999999998852 355663 3223334457888888766554
No 17
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A
Probab=99.78 E-value=9.3e-20 Score=157.11 Aligned_cols=120 Identities=18% Similarity=0.254 Sum_probs=91.3
Q ss_pred hhh--hcccHHHHhcCH--HHHHHHHHHhc-cHHHHHHHHh------hCCCCCCcccccchhhhHHhhHHHHHHHHhcc-
Q psy13048 59 HAQ--KFNMYVHYCRNK--PDSNALLVQHG-GPLFEELQKK------HRVDHPVSAYLIKPVQRITKYQLLLKDLQGEI- 126 (188)
Q Consensus 59 ~~~--~f~~Y~~Yc~n~--~~a~~~l~~~~-~~~f~~~~~~------~~~~l~L~s~LikPVQRI~rY~LLLkeLlk~t- 126 (188)
|.+ .|++|..||.|| +.|...+.+.. ++.|..+.+. ...+++|.+||++||||||||||||++|+|+|
T Consensus 89 ~~~~~~f~~Y~~Y~~n~~~~~a~~~l~~~~~~~~f~~~l~~~~~~~~~~~~~~L~~~Li~PvQRi~rY~LLL~~llk~t~ 168 (354)
T 1dbh_A 89 LAEELAFDPYESYARDILRPGFHDRFLSQLSKPGAALYLQSIGEGFKEAVQYVLPRLLLAPVYHCLHYFELLKQLEEKSE 168 (354)
T ss_dssp HHHTTTTHHHHHHHHHHTSTTHHHHHHHHHHSTTHHHHHHHHCTTHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHCS
T ss_pred HhHHhhhhHHHHHHHhccchHHHHHHHHHhcChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhchHHHHHHHHHhcCC
Confidence 556 789999999999 55567776542 2333333222 12348999999999999999999999999999
Q ss_pred --CChhHHHHHHHHHHHhhHHHhH----------------------HHh-----------hhhhcCCCCCCccc-ccCee
Q psy13048 127 --KGQGEIKDGLEVMLSVPRKAND----------------------ALH-----------LSLLEAPADVNIDA-MGEVV 170 (188)
Q Consensus 127 --~d~~~l~~Al~~~~~v~~~iNe----------------------~~~-----------~~~i~~~~~~~l~~-~g~Ll 170 (188)
+|+..++.|++.|..++..||+ .++ +..|.||.+.+|.. .++|+
T Consensus 169 ~~~d~~~L~~Al~~~~~v~~~in~~~~~~~~~r~~~e~~~~~~~ne~~r~~e~~~~l~~lq~~i~~~~~~~l~~~~r~li 248 (354)
T 1dbh_A 169 DQEDKECLKQAITALLNVQSGMEKICSKSLAKRRLSESACRFYSQQMKGKQLAIKKMNEIQKNIDGWEGKDIGQCCNEFI 248 (354)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHHHHHHSHHHHHHHHHTC-------------CTHHHHHHHTTEESCCSSCGGGTCCCEE
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHhhcccccccccchhhhhhhhhhhhhHHHHHHHHHHHHHhcCCCCcccccccceEE
Confidence 4778899999999999999887 322 13577866557764 67899
Q ss_pred eeceeEEE
Q psy13048 171 LQDALQVW 178 (188)
Q Consensus 171 ~~g~f~V~ 178 (188)
++|.+.++
T Consensus 249 ~eG~l~~~ 256 (354)
T 1dbh_A 249 MEGTLTRV 256 (354)
T ss_dssp EEEEEEET
T ss_pred EEeeEEEE
Confidence 99999887
No 18
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A
Probab=99.76 E-value=1.6e-18 Score=157.89 Aligned_cols=117 Identities=17% Similarity=0.249 Sum_probs=93.5
Q ss_pred ccHHHHhcCHHHHHHHHHHh--ccHHHHHHHHhhC-----CCCCCcccccchhhhHHhhHHHHHHHHhcc---CChhHHH
Q psy13048 64 NMYVHYCRNKPDSNALLVQH--GGPLFEELQKKHR-----VDHPVSAYLIKPVQRITKYQLLLKDLQGEI---KGQGEIK 133 (188)
Q Consensus 64 ~~Y~~Yc~n~~~a~~~l~~~--~~~~f~~~~~~~~-----~~l~L~s~LikPVQRI~rY~LLLkeLlk~t---~d~~~l~ 133 (188)
++|..||.||+.|..++.+. .++.|..+.+... ..++|.+||++|||||+||+|||++|+|+| +|+..++
T Consensus 274 ~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~fl~~~~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~LlK~T~~~~d~~~L~ 353 (536)
T 3odw_A 274 KISSRFCSRQSFALEQLKAKQRKDPRFCAFVQEAESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNTEEPTEREKVE 353 (536)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHCHHHHHHHHHHTTSGGGTTCCHHHHTTHHHHHHHHHHHHHHHHHTTCCSHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhCHHHHHHHHHHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHH
Confidence 79999999999999999764 3455666555432 369999999999999999999999999999 5788999
Q ss_pred HHHHHHHHhhHHHhHHHhh-----------hhhc-------------CCCCCCcccccCeeeeceeEEEcCC
Q psy13048 134 DGLEVMLSVPRKANDALHL-----------SLLE-------------APADVNIDAMGEVVLQDALQVWDPK 181 (188)
Q Consensus 134 ~Al~~~~~v~~~iNe~~~~-----------~~i~-------------~~~~~~l~~~g~Ll~~g~f~V~~~k 181 (188)
.|++.|+.++..||+.++. ..|. +|...++ ..++||++|.+.+..++
T Consensus 354 ~Al~~i~~v~~~iNe~~r~~e~~~kL~~iq~~L~~~~~~~~~~~~i~~~~~ldl-~~R~LI~eG~l~~~~~~ 424 (536)
T 3odw_A 354 LAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLRQSSDPMLSEFKNLDI-TKKKLVHEGPLTWRVTK 424 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECTTTTTC---CCTTSSSCCC-TTSCEEEEEEEEEESCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhccccc-ccceeeeecceEEEecC
Confidence 9999999999999998862 2222 2332233 35789999999887654
No 19
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=99.71 E-value=4.9e-19 Score=158.56 Aligned_cols=93 Identities=29% Similarity=0.527 Sum_probs=0.0
Q ss_pred hhhhcccHHHHhcCHHHHHHHHHHhc--cHHHHHHHHhh----C-CCCCCcccccchhhhHHhhHHHHHHHHhcc----C
Q psy13048 59 HAQKFNMYVHYCRNKPDSNALLVQHG--GPLFEELQKKH----R-VDHPVSAYLIKPVQRITKYQLLLKDLQGEI----K 127 (188)
Q Consensus 59 ~~~~f~~Y~~Yc~n~~~a~~~l~~~~--~~~f~~~~~~~----~-~~l~L~s~LikPVQRI~rY~LLLkeLlk~t----~ 127 (188)
|.+.|++|..||.|++.|..++.+.. ++.|+.+.+.. . .+++|.+||++|||||+||||||++|+|+| +
T Consensus 112 ~~~~~~~Y~~Y~~~~~~a~~~l~~~~~~~~~f~~~~~~~~~~~~~~~l~L~~~L~~PvQRi~rY~LLL~~llk~t~~~~~ 191 (510)
T 3jzy_A 112 ELSHMQAYIRFCSCQLNGAALLQQKTDEDTDFKEFLKKLASDPRCKGMPLSSFLLKPMQRITRYPLLIRSILENTPESHA 191 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHHHHHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHhCccccCCCHHHHhChhhhhhcCcHHHHHHHHhcCCCCCc
Confidence 77889999999999999999997642 34555554432 2 349999999999999999999999999999 5
Q ss_pred ChhHHHHHHHHHHHhhHHHhHHHh
Q psy13048 128 GQGEIKDGLEVMLSVPRKANDALH 151 (188)
Q Consensus 128 d~~~l~~Al~~~~~v~~~iNe~~~ 151 (188)
|+..++.|++.|..++.+||+.++
T Consensus 192 d~~~l~~A~~~i~~v~~~in~~~~ 215 (510)
T 3jzy_A 192 DHSSLKLALERAEELCSQVNEGVR 215 (510)
T ss_dssp ------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999886
No 20
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=99.69 E-value=1.7e-17 Score=161.34 Aligned_cols=120 Identities=18% Similarity=0.253 Sum_probs=94.5
Q ss_pred hcccHHHHhcCH--HHHHHHHHHhc-cHHHHHHHHhhC------CCCCCcccccchhhhHHhhHHHHHHHHhcc---CCh
Q psy13048 62 KFNMYVHYCRNK--PDSNALLVQHG-GPLFEELQKKHR------VDHPVSAYLIKPVQRITKYQLLLKDLQGEI---KGQ 129 (188)
Q Consensus 62 ~f~~Y~~Yc~n~--~~a~~~l~~~~-~~~f~~~~~~~~------~~l~L~s~LikPVQRI~rY~LLLkeLlk~t---~d~ 129 (188)
.|.+|..||.|| +.|...+.+.. ++.|..+.+... ..++|.+||++|||||+||||||++|+|+| +|+
T Consensus 291 ~F~~Y~~Yc~ny~~~~a~~~l~~l~~~~~f~~fl~~~~~~~~~~~~l~L~s~LikPvQRI~rY~LLL~~LlK~Tp~~~D~ 370 (1049)
T 3ksy_A 291 AFDPYESYARDILRPGFHDRFLSQLSKPGAALYLQSIGEGFKEAVQYVLPRLLLAPVYHCLHYFELLKQLEEKSEDQEDK 370 (1049)
T ss_dssp TTSHHHHHHHHHHCTTHHHHHHTTSSSTTHHHHHHHHCTTHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred hhhHHHHHHHhhccHHHHHHHHHHhcChHHHHHHHHHHhhhhhhhcCChHHHHHHHHHHHhHHHHHHHHHHhcCCCcchH
Confidence 779999999996 88888887753 344444444322 248999999999999999999999999999 578
Q ss_pred hHHHHHHHHHHHhhHHHhHHH----------------------h-----------hhhhcCCCCCCcc-cccCeeeecee
Q psy13048 130 GEIKDGLEVMLSVPRKANDAL----------------------H-----------LSLLEAPADVNID-AMGEVVLQDAL 175 (188)
Q Consensus 130 ~~l~~Al~~~~~v~~~iNe~~----------------------~-----------~~~i~~~~~~~l~-~~g~Ll~~g~f 175 (188)
.++++|++.|+.++..||+.+ + +..|.+|.+.++. ..++|+++|.+
T Consensus 371 ~~L~~Al~~i~~v~~~VNe~~~~~~~k~r~~e~~~~~~~n~~kr~~e~~~~l~~lq~~i~~~~~~~l~~~~r~Li~eG~l 450 (1049)
T 3ksy_A 371 ECLKQAITALLNVQSGMEKICSKSLAKRRLSESACRFYSQQMKGKQLAIKKMNEIQKNIDGWEGKDIGQCCNEFIMEGTL 450 (1049)
T ss_dssp HHHHHHHHHTHHHHHHHHHHTTSTTHHHHHHHHC-------------CCSHHHHHHHTSSSCCSSCGGGTCSCCCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCccccccccceEEEeceE
Confidence 899999999999999999732 1 3456676566654 46789999999
Q ss_pred EEEcCC
Q psy13048 176 QVWDPK 181 (188)
Q Consensus 176 ~V~~~k 181 (188)
.++.++
T Consensus 451 ~~~~~k 456 (1049)
T 3ksy_A 451 TRVGAK 456 (1049)
T ss_dssp EETTCS
T ss_pred EEEccC
Confidence 876543
No 21
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens}
Probab=85.58 E-value=0.033 Score=43.56 Aligned_cols=54 Identities=7% Similarity=0.152 Sum_probs=38.4
Q ss_pred CChhHHHHHHHHHHHhhHHHhHHHhh-----------hhhcCCCCC------------CcccccCeeeeceeEEEcCCc
Q psy13048 127 KGQGEIKDGLEVMLSVPRKANDALHL-----------SLLEAPADV------------NIDAMGEVVLQDALQVWDPKQ 182 (188)
Q Consensus 127 ~d~~~l~~Al~~~~~v~~~iNe~~~~-----------~~i~~~~~~------------~l~~~g~Ll~~g~f~V~~~k~ 182 (188)
+|+.+++.|++.++.++.+||+.++. ..|.. ... ++ ..++|+.+|.+++..++.
T Consensus 8 ~e~~~L~~Al~~ik~i~~~VNe~vre~E~~~rL~eiq~~l~~-~~~~~~~~~~~f~~~dL-~~R~Ll~eG~L~~k~~~~ 84 (185)
T 2lg1_A 8 VEQEDLAQSLSLVKDVIGAVDSKVASYEKKVRLNEIYTKTDS-KSIMRMKSGQMFAKEDL-KRKKLVRDGSVFLKNAAG 84 (185)
T ss_dssp SCCTTSCCSSSSSTTTSGGGGGGHHHHHHHHHHHHHHHSSCS-SCCEECTTSCEECHHHH-TTSCEEEEEEEEEECTTC
T ss_pred HhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcc-ccccccccccccccccc-CCCceeeeceEEEeccCC
Confidence 57899999999999999999998862 23332 110 12 237899999998654443
No 22
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=25.91 E-value=30 Score=25.22 Aligned_cols=29 Identities=14% Similarity=0.212 Sum_probs=24.8
Q ss_pred hhhhcCCCCCCcccccCeeeeceeEEEcC
Q psy13048 152 LSLLEAPADVNIDAMGEVVLQDALQVWDP 180 (188)
Q Consensus 152 ~~~i~~~~~~~l~~~g~Ll~~g~f~V~~~ 180 (188)
+..|+||.+.++..+|+++..+.+.+..+
T Consensus 11 ~~~I~gWeG~~i~~lG~ii~~s~v~~~~~ 39 (132)
T 1v61_A 11 SEPIQAWEGDDIKTLGNVIFMSQVVMQHG 39 (132)
T ss_dssp TSCCBTCCSSCSTTTCCCSCEEEEEBCCS
T ss_pred hhhhcccccCChhhcCCeEEEeeEEEEEc
Confidence 35688999999999999999998888754
Done!