RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13048
(188 letters)
>d1ntya1 a.87.1.1 (A:1231-1414) Triple functional domain protein
TRIO {Human (Homo sapiens) [TaxId: 9606]}
Length = 184
Score = 82.8 bits (204), Expect = 8e-21
Identities = 62/98 (63%), Positives = 81/98 (82%), Gaps = 1/98 (1%)
Query: 59 HAQKFNMYVHYCRNKPDSNALLVQHGGPLFEELQKKHRVDHPVSAYLIKPVQRITKYQLL 118
A KF MYV YC+NKPDS L+++H G F+E+Q++H + + +S+YLIKPVQRITKYQLL
Sbjct: 87 WADKFQMYVTYCKNKPDSTQLILEHAGSYFDEIQQRHGLANSISSYLIKPVQRITKYQLL 146
Query: 119 LKDLQGEI-KGQGEIKDGLEVMLSVPRKANDALHLSLL 155
LK+L +G+GEIKDGLEVMLSVP++ANDA+HLS+L
Sbjct: 147 LKELLTCCEEGKGEIKDGLEVMLSVPKRANDAMHLSML 184
>d1kz7a1 a.87.1.1 (A:624-818) Dbl's big sister, Dbs {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 195
Score = 66.7 bits (162), Expect = 1e-14
Identities = 39/99 (39%), Positives = 60/99 (60%), Gaps = 4/99 (4%)
Query: 59 HAQKFNMYVHYCRNKPDSNALLVQHGG-PLFEELQKKHRVDHPVSAYLIKPVQRITKYQL 117
++F +Y YC+NKP S +L Q P F+E QKK + +YL+KPVQRITKYQL
Sbjct: 95 RMEEFQIYEKYCQNKPRSESLWRQCSDCPFFQECQKKLDHKLSLDSYLLKPVQRITKYQL 154
Query: 118 LLKDLQ---GEIKGQGEIKDGLEVMLSVPRKANDALHLS 153
LLK++ +G ++++ L +L + + ND++HL
Sbjct: 155 LLKEMLKYSKHCEGAEDLQEALSSILGILKAVNDSMHLI 193
>d1by1a_ a.87.1.1 (A:) beta-pix {Human (Homo sapiens) [TaxId: 9606]}
Length = 209
Score = 58.5 bits (141), Expect = 1e-11
Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 7/96 (7%)
Query: 61 QKFNMYVHYCRNKPDSNALLVQHGGPL---FEELQKKHRVDHPVSAYLIKPVQRITKYQL 117
Q +Y+ YC N P + +L +H L E ++ L KP R+ KY
Sbjct: 98 QMKTLYLTYCANHPSAVNVLTEHSEELGEFMETKGASSPGILVLTTGLSKPFMRLDKYPT 157
Query: 118 LLKDL----QGEIKGQGEIKDGLEVMLSVPRKANDA 149
LLK+L + + +I+ + ++ + +
Sbjct: 158 LLKELERHMEDYHTDRQDIQKSMAAFKNLSAQCQEV 193
>d1foea1 a.87.1.1 (A:1034-1239) GEF of TIAM1 (T-Lymphoma invasion
and metastasis inducing protein 1) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 206
Score = 49.8 bits (118), Expect = 2e-08
Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 9/100 (9%)
Query: 59 HAQKFNMYVHYCRNKPDSNALLVQHGG-----PLFEELQKKHRVDHPVSAYLIKPVQRIT 113
+A +F +Y +C + +LV+ + + + + +YLIKP+QR+
Sbjct: 102 YADRFKLYSAFCASHTKVPKVLVKAKTDTAFKAFLDAQNPRQQHSSTLESYLIKPIQRVL 161
Query: 114 KYQLLLKDL----QGEIKGQGEIKDGLEVMLSVPRKANDA 149
KY LLL++L E + + ++ M V N+
Sbjct: 162 KYPLLLRELFALTDAESEEHYHLDVAIKTMNKVASHINEM 201
>d1f5xa_ a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [TaxId:
10090]}
Length = 208
Score = 49.4 bits (117), Expect = 3e-08
Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 10/101 (9%)
Query: 59 HAQKFNMYVHYCRNKPDSNALLVQ-------HGGPLFEELQKKHRVDHPVSAYLIKPVQR 111
+ ++F +Y YC ++ L Q L E Q+ + + L+ P+QR
Sbjct: 106 YKERFLVYGRYCSQVESASKHLDQVATAREDVQMKLEECSQRANNGRFTLRDLLMVPMQR 165
Query: 112 ITKYQLLLKDLQGEIKGQGE---IKDGLEVMLSVPRKANDA 149
+ KY LLL++L + E ++ L+ M + + N+
Sbjct: 166 VLKYHLLLQELVKHTQDATEKENLRLALDAMRDLAQCVNEV 206
>d1dbha1 a.87.1.1 (A:198-404) Son of sevenless-1 (sos-1) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 48.6 bits (115), Expect = 6e-08
Identities = 21/106 (19%), Positives = 34/106 (32%), Gaps = 12/106 (11%)
Query: 58 AHAQKFNMYVHYCRNKPDSNALLV----QHGGPLFEELQK-----KHRVDHPVSAYLIKP 108
A F+ Y Y R+ LQ K V + + L+ P
Sbjct: 90 AEELAFDPYESYARDILRPGFHDRFLSQLSKPGAALYLQSIGEGFKEAVQYVLPRLLLAP 149
Query: 109 VQRITKYQLLLKDLQGEIKGQGE---IKDGLEVMLSVPRKANDALH 151
V Y LLK L+ + + Q + +K + +L+V
Sbjct: 150 VYHCLHYFELLKQLEEKSEDQEDKECLKQAITALLNVQSGMEKICS 195
>d2dfka1 a.87.1.1 (A:37-239) Rho guanine nucleotide exchange factor
9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 203
Score = 45.9 bits (108), Expect = 4e-07
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 10/103 (9%)
Query: 59 HAQKFNMYVHYCRNKPDSNALLVQH-GGPLFEELQKKHR-----VDHPVSAYLIKPVQRI 112
H F +Y YC N D+ L + ++ + R +D + +L+ PVQ+I
Sbjct: 98 HQDGFWIYSEYCNNHLDACMELSKLMKDSRYQHFFEACRLLQQMIDIAIDGFLLTPVQKI 157
Query: 113 TKYQLLLKDL----QGEIKGQGEIKDGLEVMLSVPRKANDALH 151
KY L L +L + + L VM +V ++ N+
Sbjct: 158 CKYPLQLAELLKYTAQDHSDYRYVAAALAVMRNVTQQINERKR 200
>d1ki1b1 a.87.1.1 (B:1229-1438) GEF of intersectin {Human (Homo
sapiens) [TaxId: 9606]}
Length = 210
Score = 44.4 bits (104), Expect = 1e-06
Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 11/106 (10%)
Query: 57 EAHAQKFNMYVHYCRNKPDSNALLVQHGG--PLFEELQKKHRVDH-----PVSAYLIKPV 109
A Y+ +C + + AL+ Q P F+E K+ +D P+S++++KP+
Sbjct: 92 SAQLPHMQPYIRFCSRQLNGAALIQQKTDEAPDFKEFVKRLEMDPRCKGMPLSSFILKPM 151
Query: 110 QRITKYQLLLKDL----QGEIKGQGEIKDGLEVMLSVPRKANDALH 151
QR+T+Y L++K++ +K LE + + N+ +
Sbjct: 152 QRVTRYPLIIKNILENTPENHPDHSHLKHALEKAEELCSQVNEGVR 197
>d1xcga1 a.87.1.1 (A:714-941) Rho guanine nucleotide exchange factor
11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]}
Length = 228
Score = 42.5 bits (99), Expect = 8e-06
Identities = 17/107 (15%), Positives = 40/107 (37%), Gaps = 11/107 (10%)
Query: 56 KEAHAQKFNMYVHYCRNKPDSNALL--VQHGGPLFEELQKKHRVDH-----PVSAYLIKP 108
A + + +C + + L+ Q F+ ++ + +I
Sbjct: 106 GPAREELQQVAAQFCSYQSIALELIKTKQRKESRFQLFMQEAESHPQCRRLQLRDLIISE 165
Query: 109 VQRITKYQLLLKDL----QGEIKGQGEIKDGLEVMLSVPRKANDALH 151
+QR+TKY LLL+ + +G ++ + + + N+A+
Sbjct: 166 MQRLTKYPLLLESIIKHTEGGTSEHEKLCRARDQCREILKYVNEAVK 212
>d1txda1 a.87.1.1 (A:766-999) Rho guanine nucleotide exchange factor
12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]}
Length = 234
Score = 41.7 bits (97), Expect = 2e-05
Identities = 16/107 (14%), Positives = 37/107 (34%), Gaps = 10/107 (9%)
Query: 55 KKEAHAQKFNMYVHYCRNKPDSNALLVQHG--GPLFEELQKKHRVDH-----PVSAYLIK 107
+ + +C N+P + ++ F+ + + + +
Sbjct: 108 SGPGEEKLKHAAATFCSNQPFALEMIKSRQKKDSRFQTFVQDAESNPLCRRLQLKDIIPT 167
Query: 108 PVQRITKYQLLLKDLQGEIKGQGE---IKDGLEVMLSVPRKANDALH 151
+QR+TKY LLL ++ + E +K + + N A+
Sbjct: 168 QMQRLTKYPLLLDNIAKYTEWPTEREKVKKAADHCRQILNFVNQAVK 214
>d1ntya2 b.55.1.1 (A:1415-1535) Triple functional domain protein
TRIO {Human (Homo sapiens) [TaxId: 9606]}
Length = 121
Score = 34.9 bits (80), Expect = 0.002
Identities = 17/27 (62%), Positives = 23/27 (85%)
Query: 160 DVNIDAMGEVVLQDALQVWDPKQLIRK 186
D NI++ GE++LQ++ QVWDPK LIRK
Sbjct: 4 DENIESQGELILQESFQVWDPKTLIRK 30
>d1kz7a2 b.55.1.1 (A:819-965) Dbl's big sister, Dbs {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 147
Score = 29.3 bits (65), Expect = 0.14
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 160 DVNIDAMGEVVLQDALQVWDPKQLIRKEV 188
D N+ +G++++Q + VW + +V
Sbjct: 4 DGNLGDLGKLLMQGSFSVWTDHKKGHTKV 32
>d1itwa_ c.77.1.2 (A:) Monomeric isocitrate dehydrogenase
{Azotobacter vinelandii [TaxId: 354]}
Length = 740
Score = 26.3 bits (58), Expect = 2.9
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 155 LEAPADVNIDAMGEVVLQDALQVWDP 180
L P+DV +DA +++D+ ++W P
Sbjct: 340 LHVPSDVIVDASMPAMIRDSGKMWGP 365
>d1fhoa_ b.55.1.1 (A:) UNC-89 {Nematode (Caenorhabditis elegans)
[TaxId: 6239]}
Length = 119
Score = 24.9 bits (54), Expect = 4.5
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 162 NIDAMGEVVLQDALQVWDPKQ 182
+ +G ++ DA QVW+ +
Sbjct: 3 DTGKLGRIIRHDAFQVWEGDE 23
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 24.9 bits (53), Expect = 6.3
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 125 EIKGQGEIKDGLEVMLSVPRKANDALHLSLLEAP 158
E GQ +K L V L + + L LL P
Sbjct: 10 EYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGP 43
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.132 0.372
Gapped
Lambda K H
0.267 0.0511 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 651,673
Number of extensions: 28117
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 18
Length of query: 188
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 108
Effective length of database: 1,309,196
Effective search space: 141393168
Effective search space used: 141393168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.6 bits)