RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1305
(68 letters)
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid
metabolism, FAD, polymorphism, flavoprotein,
mitochondrion, disease mutation; HET: FAD COS; 1.9A
{Homo sapiens} PDB: 1jqi_A*
Length = 391
Score = 109 bits (276), Expect = 4e-31
Identities = 45/67 (67%), Positives = 56/67 (83%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALH 60
ML +TCRDFA++EL PIAA++DKEHLFPA Q+KK+G LGL+ + V EE GGAGLD LA
Sbjct: 12 MLLQTCRDFAEKELFPIAAQVDKEHLFPAAQVKKMGGLGLLAMDVPEELGGAGLDYLAYA 71
Query: 61 VAMEEIA 67
+AMEEI+
Sbjct: 72 IAMEEIS 78
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national
project protein structural and functional analyses;
HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1
e.6.1.1 PDB: 1ws9_A 2cx9_A*
Length = 387
Score = 109 bits (274), Expect = 1e-30
Identities = 27/67 (40%), Positives = 37/67 (55%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALH 60
+ R+F + E+ P AA+ D+ FP D ++KL G+ G LV E YGGAGL T
Sbjct: 13 QVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVFGALVPEAYGGAGLSTRLFA 72
Query: 61 VAMEEIA 67
+E IA
Sbjct: 73 RMVEAIA 79
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion,
oxidoreductase, transit peptide, fatty acid metabolism,
FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens}
Length = 404
Score = 107 bits (270), Expect = 4e-30
Identities = 23/67 (34%), Positives = 40/67 (59%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALH 60
M++ + + FAQ+++ P+ + +D+ I+ L GLMG+ VD EYGG G L+
Sbjct: 35 MIKSSVKKFAQEQIAPLVSTMDENSKMEKSVIQGLFQQGLMGIEVDPEYGGTGASFLSTV 94
Query: 61 VAMEEIA 67
+ +EE+A
Sbjct: 95 LVIEELA 101
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national
project on protein STR and functional analyses; HET:
FAD; 2.50A {Thermus thermophilus}
Length = 372
Score = 106 bits (268), Expect = 5e-30
Identities = 25/67 (37%), Positives = 43/67 (64%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALH 60
++ R A++ L P+A + D++ +P Q+K L LGL+G+ EE+GG GLD++
Sbjct: 9 LVLDAVRRVAREVLYPLAPEYDRKAEYPWPQLKALAELGLLGMTTPEEWGGVGLDSVTWA 68
Query: 61 VAMEEIA 67
+A+EE+A
Sbjct: 69 LALEELA 75
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP:
a.29.3.1 e.6.1.1
Length = 379
Score = 106 bits (266), Expect = 1e-29
Identities = 25/67 (37%), Positives = 39/67 (58%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALH 60
LQ R FA++ + P+A + D++ P I+KL +GL+ ++ EEYGG GL L
Sbjct: 11 QLQALARRFAKEVILPVAQEYDEKEEVPWPVIEKLHEVGLLNAIIPEEYGGMGLKMLDEV 70
Query: 61 VAMEEIA 67
+ EE+A
Sbjct: 71 IVGEELA 77
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA
dehydrogenase, flavoprotein, isovaleric acidemia; HET:
FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Length = 394
Score = 106 bits (266), Expect = 1e-29
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFP--ADQIKKLGALGLMGVLVDEEYGGAGLDTLA 58
L++T F Q+ L P A ++D+ + F + K+LG LG++G+ +YGG+GL L
Sbjct: 19 QLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYLE 78
Query: 59 LHVAMEEIA 67
+ MEEI+
Sbjct: 79 HVLVMEEIS 87
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
FDA; 2.10A {Mycobacterium thermoresistibile}
Length = 393
Score = 106 bits (266), Expect = 1e-29
Identities = 24/67 (35%), Positives = 42/67 (62%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALH 60
L++ R A++E+ P AA++D++ FP + + L + G + V EEYGG G D++A
Sbjct: 25 ALREAIRALAEKEIAPYAAEVDEKARFPEEALAALNSSGFSAIHVPEEYGGQGADSVATC 84
Query: 61 VAMEEIA 67
+ +EE+A
Sbjct: 85 IVIEEVA 91
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for
infectious disease, S FAD, FADH, tuberculosis,
oxidoredu; HET: FAD; 2.35A {Mycobacterium
thermoresistibile}
Length = 387
Score = 105 bits (264), Expect = 2e-29
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALH 60
L + R+ A + L PI + +K+ +P ++LGA GL+ + EE+GG G
Sbjct: 22 ELIELTREIADKVLDPIVDRHEKDETYPEGVFEQLGAAGLLSLPQPEEWGGGGQPYEVYL 81
Query: 61 VAMEEIA 67
+EEIA
Sbjct: 82 QVLEEIA 88
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron
transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1
e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A*
3mdd_A* 3mde_A*
Length = 396
Score = 105 bits (264), Expect = 3e-29
Identities = 26/67 (38%), Positives = 37/67 (55%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALH 60
Q T R FA++E+ P+AA+ DK +P I++ LGLM + E GG GL T
Sbjct: 22 EFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCGGLGLGTFDAC 81
Query: 61 VAMEEIA 67
+ EE+A
Sbjct: 82 LISEELA 88
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial;
flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC;
1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Length = 393
Score = 104 bits (263), Expect = 3e-29
Identities = 26/67 (38%), Positives = 37/67 (55%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALH 60
QK DFA +E+ P A+ D++ LFP D ++K LG GV + + GG+GL L
Sbjct: 25 EFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVGGSGLSRLDTS 84
Query: 61 VAMEEIA 67
V E +A
Sbjct: 85 VIFEALA 91
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain
acyl-COA dehydrogenase, flavoprotein, oxidoreductase;
HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP:
a.29.3.1 e.6.1.1
Length = 383
Score = 102 bits (258), Expect = 2e-28
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGL---DTL 57
K DF +++L P + D + ++ + I +L +LG+ G +E+YGG+G D L
Sbjct: 11 DFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSLGITGAYFEEKYGGSGDDGGDVL 70
Query: 58 ALHVAMEEIA 67
+ +A+EE+A
Sbjct: 71 SYILAVEELA 80
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET:
FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A*
Length = 397
Score = 101 bits (255), Expect = 6e-28
Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQI-KKLGALGLMGVLVDEEYGGAGLDT--L 57
MLQK R+F +++ P A + D E+ FP ++ + +G LG G ++ EEYGG G+D L
Sbjct: 11 MLQKEVRNFVNKKIVPFADQWDNENHFPYEEAVRPMGELGFFGTVIPEEYGGEGMDQGWL 70
Query: 58 ALHVAMEEIA 67
A + EEIA
Sbjct: 71 AAMIVTEEIA 80
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas
oxidoreductase; 3.15A {Micromonospora carbonacea}
Length = 395
Score = 96.9 bits (242), Expect = 3e-26
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALH 60
+ + AA D+ FP + ++ LGLMG V E GG GL L
Sbjct: 15 TVVDLLAGVIP-RISAEAADRDRTGTFPVEAFEQFAKLGLMGATVPAELGGLGLTRLYDV 73
Query: 61 V-AMEEIA 67
A+ +A
Sbjct: 74 ATALMRLA 81
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA
dehydrogen flavoprotein, oxidoreductase; HET: FAD;
2.00A {Podospora anserina}
Length = 438
Score = 96.6 bits (241), Expect = 6e-26
Identities = 10/74 (13%), Positives = 21/74 (28%), Gaps = 7/74 (9%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKE-------HLFPADQIKKLGALGLMGVLVDEEYGGAG 53
+ R A+ L P + + G++ + +GG G
Sbjct: 13 GTYQAARSLARNLLMPARQTYLQHPPNSPLRFQSTQPTYAAAVSAGILKGQISPAHGGTG 72
Query: 54 LDTLALHVAMEEIA 67
+ + +EE
Sbjct: 73 GTLIESAILVEECY 86
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA
dehydrogenase, , aldehyde dehydrogenase,
oxidoreductase; HET: FAD; 2.10A {Streptomyces
hygroscopicus} SCOP: a.29.3.1 e.6.1.1
Length = 366
Score = 93.7 bits (234), Expect = 4e-25
Identities = 16/61 (26%), Positives = 24/61 (39%)
Query: 7 RDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALHVAMEEI 66
+ AA+ D P D + +LGA GL+ V E+GG GL + +
Sbjct: 5 DALLTDLVGDRAAEWDTSGELPRDLLVRLGADGLLCAEVAAEHGGLGLGSRENGEFTAHV 64
Query: 67 A 67
Sbjct: 65 G 65
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na
project on protein structural and functional analyses;
HET: FAD; 2.30A {Thermus thermophilus}
Length = 577
Score = 94.3 bits (235), Expect = 7e-25
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHL-FPADQIKKLGALGLMGVLVDEEYGGAGLDTLAL 59
+ +T R F ++E+ P+ +++ L ++K G LGL+ + V EEYGG L +
Sbjct: 34 EIARTTRTFVEREVLPLLERMEHGELELNVPLMRKAGELGLLAIDVPEEYGGLDLPKVIS 93
Query: 60 HVAMEEIA 67
V EE++
Sbjct: 94 TVVAEELS 101
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural
genomics of infec diseases, csgid, alpha-structure,
beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus
anthracis}
Length = 597
Score = 92.8 bits (231), Expect = 2e-24
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDK-EHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLAL 59
M+ KT DF E+ P L++ E +K+ G LGL+G V EEYGG GLD ++
Sbjct: 39 MIAKTTEDFIVNEVLPELEYLEQHEFDRSVRLLKEAGELGLLGADVPEEYGGIGLDKVSS 98
Query: 60 HVAMEEIA 67
+ E+ +
Sbjct: 99 ALIAEKFS 106
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase
family, kijanose, kijani FAD, flavoprotein; HET: TYD;
2.05A {Actinomadura kijaniata}
Length = 439
Score = 91.2 bits (227), Expect = 6e-24
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALH 60
+L + ++ AA+ D++ FP D L GLMG V E GG G+D L
Sbjct: 27 LLDRLAAHLP--RIRSTAAEHDRDGTFPTDTFDALRKDGLMGATVPAELGGLGVDRLYDV 84
Query: 61 -VAMEEIA 67
VA+ +A
Sbjct: 85 AVALLAVA 92
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA
dehydrogenase, long cell EDGE, FAD, inhibitor,
flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium
oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A*
2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A*
Length = 439
Score = 91.2 bits (227), Expect = 7e-24
Identities = 11/73 (15%), Positives = 24/73 (32%), Gaps = 6/73 (8%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEH------LFPADQIKKLGALGLMGVLVDEEYGGAGL 54
++ + FA L +A+ + ++ GL+ V GG
Sbjct: 12 EARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTME 71
Query: 55 DTLALHVAMEEIA 67
+ + +EE+
Sbjct: 72 SLVHESIILEELF 84
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease,
oxidoreductase; HET: FAO; 1.70A {Mycobacterium
smegmatis} PDB: 3oib_A*
Length = 403
Score = 90.7 bits (226), Expect = 9e-24
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALH 60
L+KT R FA++E+ P A + ++ P + +K LGL+G E+ GG+G D
Sbjct: 32 ALRKTVRAFAEREVLPHAHEWERAGEIPRELHRKAAELGLLGAGFPEDAGGSGGDGADPV 91
Query: 61 VAMEEIA 67
V EE+
Sbjct: 92 VICEEMH 98
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease,
oxidoreductase; HET: FDA; 2.50A {Mycobacterium
abscessus}
Length = 403
Score = 89.9 bits (224), Expect = 2e-23
Identities = 18/67 (26%), Positives = 31/67 (46%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALH 60
L + R F ++E+ P A+ + P D +GL+G+ EE GG+G + +
Sbjct: 35 ALSQMARSFVEREIAPKLAEWEHVGEIPRDLHLNAAEVGLLGIGFPEEVGGSGGNAIDSA 94
Query: 61 VAMEEIA 67
+ E I
Sbjct: 95 LVTEAIL 101
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA
structural genomics, PSI, protein structure initiative;
HET: FAD; 1.80A {Geobacillus kaustophilus}
Length = 385
Score = 89.1 bits (222), Expect = 2e-23
Identities = 20/67 (29%), Positives = 29/67 (43%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALH 60
M + R F ++E P +K + P K+G G + VDE+YGG D
Sbjct: 16 MFRAAFRKFLEKEAYPHYNDWEKRGIIPRSFWAKMGENGFLCPWVDEKYGGLNADFAYSV 75
Query: 61 VAMEEIA 67
V EE+
Sbjct: 76 VINEELE 82
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening,
optimization, protein crystallization, structural
genomics; HET: PGE PG4; 1.74A {Burkholderia
pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A*
3gnc_A* 3d6b_A
Length = 396
Score = 85.3 bits (212), Expect = 7e-22
Identities = 18/67 (26%), Positives = 35/67 (52%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALH 60
M++ +AQ +L P + + A +++G +GL+G + E+YGG GLD ++
Sbjct: 25 MVRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREMGEIGLLGPTIPEQYGGPGLDYVSYG 84
Query: 61 VAMEEIA 67
+ E+
Sbjct: 85 LIAREVE 91
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD,
STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus
thermophilus}
Length = 385
Score = 83.0 bits (206), Expect = 5e-21
Identities = 21/67 (31%), Positives = 33/67 (49%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALH 60
+QK R F ++E P +E +FP I + LG +G + EYGGAG+ + A
Sbjct: 17 EVQKAARRFLEKEALPHIRDWWEEGVFPTHLIPRFAELGFLGPTLPPEYGGAGVSSAAYG 76
Query: 61 VAMEEIA 67
+ E+
Sbjct: 77 LICYELE 83
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid
metabolism, transit peptide, disease mutation, LI
metabolism, coenzyme A dehydrogenase; HET: FAD TH3;
1.45A {Homo sapiens} PDB: 3b96_A*
Length = 607
Score = 82.8 bits (205), Expect = 7e-21
Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALH 60
L + F ++ P AK D + + L LG G+ V E GG GL
Sbjct: 56 ELVEPVSRFFEEVNDP--AKNDALEMVEETTWQGLKELGAFGLQVPSELGGVGLCNTQYA 113
Query: 61 VAMEEIAQ 68
+E +
Sbjct: 114 RLVEIVGM 121
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase,
mycobacerium smegmatis, S genomics; HET: FDA; 1.45A
{Mycobacterium smegmatis}
Length = 399
Score = 80.3 bits (199), Expect = 5e-20
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALH 60
+ T R F LKP + P++ K+ G LG++G+ + + YG AG + ++
Sbjct: 32 DIAATVRQFVDTRLKPNVEGWFESATLPSELAKEFGNLGVLGMHL-QGYGCAGTNAVSYG 90
Query: 61 VAMEEIA 67
+A E+
Sbjct: 91 LACMELE 97
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin,
peroxisome, glyoxysome, fatty acid metabo lipid
metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A
{Arabidopsis thaliana} PDB: 2ix6_A*
Length = 436
Score = 76.9 bits (190), Expect = 8e-19
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALH 60
++K R+ ++E+ PI + ++ FP KLGA+G+ G + + YG GL A
Sbjct: 61 AIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSI-KGYGCPGLSITANA 119
Query: 61 VAMEEIA 67
+A EIA
Sbjct: 120 IATAEIA 126
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase,
decarboxylation, flavin protein, oxidoreductase; HET:
FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB:
2r0n_A* 1sir_A* 2r0m_A*
Length = 392
Score = 73.8 bits (182), Expect = 9e-18
Identities = 17/67 (25%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALH 60
+++ T R + Q+ L P ++ +F + I ++G LG++G + + YG AG+ ++A
Sbjct: 20 LIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTI-KGYGCAGVSSVAYG 78
Query: 61 VAMEEIA 67
+ E+
Sbjct: 79 LLARELE 85
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; HET: FDA; 1.70A
{Mycobacterium smegmatis}
Length = 403
Score = 73.8 bits (182), Expect = 1e-17
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQI-KKLGALGLMGVLVDEEYGGAGLDTLAL 59
++ T R Q+ +KP A ++ PA ++ +LG LGL+G+ + + YG AG+ +A
Sbjct: 36 EIRDTVRSVVQRRIKPHIASWYEDGELPARELAVELGELGLLGMHL-KGYGCAGMSAVAY 94
Query: 60 HVAMEEIA 67
+A E+
Sbjct: 95 GLACLELE 102
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme
hydroxylase, oxidoreductase; 2.3A {Acinetobacter
baumannii} PDB: 2jbs_A* 2jbt_A*
Length = 422
Score = 54.0 bits (130), Expect = 1e-10
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 7 RDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALHVAMEEI 66
+ ++ A ++ P + IK L +GL + YGG + + +
Sbjct: 45 QQILP-QIAKNAESAEQLRRVPDENIKLLKEIGLHRAFQPKVYGGLEMSLPDFANCIVTL 103
Query: 67 AQ 68
A
Sbjct: 104 AG 105
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural
genomics protein structure initiative, midwest center
for structural genomics, MCSG; HET: 1PS; 1.65A
{Rhodococcus SP} PDB: 3aff_A 3afe_A
Length = 394
Score = 42.0 bits (99), Expect = 2e-06
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 12 QELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALHVAMEEIAQ 68
L+ A + + P D +K L G +L E++GG D + + A+ +IA
Sbjct: 21 PTLRERAQETEDLRRIPDDSMKALQETGFFRLLQPEQWGGYQADPVLFYSAVRKIAS 77
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics,
PSI-2, protein structure initiative, midwest CENT
structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus
SP}
Length = 414
Score = 40.1 bits (94), Expect = 9e-06
Identities = 8/51 (15%), Positives = 16/51 (31%)
Query: 18 AAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALHVAMEEIAQ 68
A + + + L G + +L YGG + + +A
Sbjct: 40 AVQSEADCRLTDAAAGLLRDSGAIRLLQPRLYGGYEVHPREFAETVMGVAA 90
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.018
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 9/35 (25%)
Query: 31 QIKKL-GALGLMGVLVDEEYGGAGLDTLALHVAME 64
+KKL +L L Y LA+ ME
Sbjct: 21 ALKKLQASLKL--------YADDSAPALAIKATME 47
Score = 28.4 bits (62), Expect = 0.12
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 8/28 (28%)
Query: 11 QQELKPIAAKLDKEHLF-----PADQIK 33
+Q LK + A L K L+ PA IK
Sbjct: 19 KQALKKLQASL-K--LYADDSAPALAIK 43
>2d7e_A Primosomal protein N'; inter-twined, hydrolase; 2.50A
{Escherichia coli} PDB: 2d7g_A* 2d7h_A* 2dwl_A 2dwm_A
2dwn_A*
Length = 105
Score = 29.4 bits (67), Expect = 0.029
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 8 DFAQQELKPIAAKLDKEHLFPADQIK 33
+ ELK + LD E +F +
Sbjct: 54 ELPLNELKAVVEVLDSEPVFTHSVWR 79
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.2 bits (54), Expect = 2.2
Identities = 8/48 (16%), Positives = 12/48 (25%), Gaps = 10/48 (20%)
Query: 2 LQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEY 49
Q +D D + + D K +L EE
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDV--QDMPK--------SILSKEEI 51
Score = 24.8 bits (53), Expect = 2.6
Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 14/65 (21%)
Query: 5 TCRDFAQQELKPIAAKLDKEHLFPADQIKKL--GALGL---MGVLVDEEYG--GAGLDTL 57
RD + + A K ++ KL L L VL+ G G+G +
Sbjct: 114 EQRDRLYNDNQVFA----KYNVSRLQPYLKLRQALLELRPAKNVLI---DGVLGSGKTWV 166
Query: 58 ALHVA 62
AL V
Sbjct: 167 ALDVC 171
>1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component;
rieske center, oxygen binding/activation, substrate
bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2
d.129.3.3 PDB: 1z02_A 1z03_A*
Length = 446
Score = 24.7 bits (53), Expect = 2.5
Identities = 6/21 (28%), Positives = 6/21 (28%)
Query: 10 AQQELKPIAAKLDKEHLFPAD 30
A Q D E L D
Sbjct: 371 AMQNFYYDGTGWDDEQLVATD 391
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP:
c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Length = 213
Score = 24.3 bits (53), Expect = 3.5
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 11 QQELKPIAAKLDKEHLFPADQIKKLGAL 38
+E+K IA++ ++H F L +
Sbjct: 161 VEEIKSIASEPTEKHFFNVSDELALVTI 188
>3s64_A AC-SLP-1, saposin-like protein 1; lipid-binding, lipid binding
protein; HET: CIT EPE; 2.30A {Ancylostoma caninum}
Length = 87
Score = 24.1 bits (51), Expect = 3.7
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 2 LQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGA 37
+K C+ A+ E+ I L + P + L A
Sbjct: 52 AEKECKALAKIEMGAIKTLL-ENGSAPEEICTTLHA 86
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide
binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB:
4dmu_B 2adf_A 1fe8_A 1ao3_A
Length = 189
Score = 24.2 bits (53), Expect = 4.1
Identities = 4/28 (14%), Positives = 12/28 (42%)
Query: 11 QQELKPIAAKLDKEHLFPADQIKKLGAL 38
+L+ +A ++ +I+ L +
Sbjct: 149 AAQLRILAGPAGDSNVVKLQRIEDLPTM 176
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.385
Gapped
Lambda K H
0.267 0.0794 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,094,680
Number of extensions: 55144
Number of successful extensions: 198
Number of sequences better than 10.0: 1
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 42
Length of query: 68
Length of database: 6,701,793
Length adjustment: 38
Effective length of query: 30
Effective length of database: 5,640,795
Effective search space: 169223850
Effective search space used: 169223850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.3 bits)