RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1305
(68 letters)
>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 231
Score = 67.7 bits (164), Expect = 2e-16
Identities = 42/65 (64%), Positives = 53/65 (81%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALH 60
ML++TCRDFA++EL PIAA+LDKEHLFP Q+KK+G LGL+ + V EE GAGLD LA
Sbjct: 13 MLRQTCRDFAEKELVPIAAQLDKEHLFPTSQVKKMGELGLLAMDVPEELSGAGLDYLAYS 72
Query: 61 VAMEE 65
+A+EE
Sbjct: 73 IALEE 77
>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 231
Score = 56.1 bits (134), Expect = 5e-12
Identities = 26/67 (38%), Positives = 37/67 (55%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALH 60
QK DFA +E+ P A+ D++ LFP D ++K LG GV + + GG+GL L
Sbjct: 16 EFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVGGSGLSRLDTS 75
Query: 61 VAMEEIA 67
V E +A
Sbjct: 76 VIFEALA 82
>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces
hygroscopicus [TaxId: 1912]}
Length = 210
Score = 54.7 bits (130), Expect = 1e-11
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 7 RD-FAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAG 53
RD + AA+ D P D + +LGA GL+ V E+GG G
Sbjct: 2 RDALLTDLVGDRAAEWDTSGELPRDLLVRLGADGLLCAEVAAEHGGLG 49
>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus
thermophilus [TaxId: 274]}
Length = 233
Score = 46.9 bits (110), Expect = 1e-08
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLM 41
+ R+F + E+ P AA+ D+ FP D ++KL G+
Sbjct: 12 QVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVF 52
>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human
(Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 46.2 bits (108), Expect = 2e-08
Identities = 17/68 (25%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALH 60
+++ T R + Q+ L P ++ +F + I ++G LG++G + YG AG+ ++A
Sbjct: 20 LIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIK-GYGCAGVSSVAYG 78
Query: 61 VAMEEIAQ 68
+ E+ +
Sbjct: 79 LLARELER 86
>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase,
NM domains {Pig (Sus scrofa) [TaxId: 9823]}
Length = 231
Score = 45.7 bits (107), Expect = 3e-08
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALH 60
Q T R FA++E+ P+AA+ D+ +P +K+ LGLM + E +GG GL +
Sbjct: 12 EFQATARKFAREEIIPVAAEYDRTGEYPVPLLKRAWELGLMNTHIPESFGGLGLGIIDSC 71
Query: 61 VAME 64
+ E
Sbjct: 72 LITE 75
>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum
[TaxId: 5507]}
Length = 259
Score = 45.2 bits (105), Expect = 5e-08
Identities = 7/55 (12%), Positives = 16/55 (29%), Gaps = 6/55 (10%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKE------HLFPADQIKKLGALGLMGVLVDEEY 49
++ + FA L +A+ + ++ GL+ V
Sbjct: 11 EARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPL 65
>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase,
NM domains {Thermus thermophilus [TaxId: 274]}
Length = 227
Score = 45.0 bits (105), Expect = 6e-08
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYG 50
LQ R FA++ + P+A + D++ P I+KL +GL+ ++ EEYG
Sbjct: 11 QLQALARRFAKEVILPVAQEYDEKEEVPWPVIEKLHEVGLLNAIIPEEYG 60
>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains
{Megasphaera elsdenii [TaxId: 907]}
Length = 232
Score = 43.9 bits (102), Expect = 1e-07
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGAL 38
K DF +++L P + D + ++ + I +L +L
Sbjct: 11 DFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSL 48
>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 38.6 bits (89), Expect = 1e-05
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQ--IKKLGALGLMGVLVDEEYGGAGLDTLA 58
L++T F Q+ L P A ++D+ + F + K+LG LG++G+ +YGG+GL L
Sbjct: 14 QLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYLE 73
Query: 59 LHVAME 64
+ ME
Sbjct: 74 HVLVME 79
>d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1
alpha subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 194
Score = 23.8 bits (50), Expect = 2.0
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 8 DFAQQELKPIAAKLDKEHLFPADQIKKLGAL 38
+ ++QEL IA+K ++H+F + + L +
Sbjct: 151 EKSRQELNTIASKPPRDHVFQVNNFEALKTI 181
>d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function
associated antigen-1, LFA-1) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 179
Score = 23.7 bits (50), Expect = 2.3
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 7 RDFAQQELKPIAAKLDKEHLFPADQIKKLGAL 38
+Q+ L A+K E + D +KL L
Sbjct: 140 TKESQETLHKFASKPASEFVKILDTFEKLKDL 171
>d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 184
Score = 22.9 bits (48), Expect = 3.6
Identities = 4/32 (12%), Positives = 13/32 (40%)
Query: 7 RDFAQQELKPIAAKLDKEHLFPADQIKKLGAL 38
+ +L+ +A ++ +I+ L +
Sbjct: 142 DRYDAAQLRILAGPAGDSNVVKLQRIEDLPTM 173
>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium
falciparum [TaxId: 5833]}
Length = 190
Score = 22.8 bits (48), Expect = 3.9
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDE 47
+L F Q ++ I D+++ A + K+ G ++DE
Sbjct: 139 LLYHYLSSFTNQTVETIEKDSDRDYYMNALEAKQYG-------IIDE 178
>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 192
Score = 22.7 bits (48), Expect = 4.1
Identities = 8/47 (17%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDE 47
L+K + + Q ++ + A ++++ A + + G +DE
Sbjct: 148 TLEKILAENSGQSMEKVHADAERDNWMSAQETLEYG-------FIDE 187
>d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 192
Score = 22.9 bits (48), Expect = 4.3
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 8 DFAQQELKPIAAKLDKEHLFPADQIKKLGAL 38
+ +E+K IA++ ++H F L +
Sbjct: 152 EKFVEEIKSIASEPTEKHFFNVSDELALVTI 182
>d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 189
Score = 22.6 bits (47), Expect = 5.7
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 7 RDFAQQELKPIAAKLDKEHLFPADQIKKLGAL 38
+ +EL IA+K +EH+F + L +
Sbjct: 147 NRNSWKELNDIASKPSQEHIFKVEDFDALKDI 178
>d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 193
Score = 22.5 bits (47), Expect = 5.9
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 11 QQELKPIAAKLDKEHLFPADQIKKL 35
+E+K IA+ + + F L
Sbjct: 155 IKEIKAIASIPTERYFFNVSDEAAL 179
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.385
Gapped
Lambda K H
0.267 0.0441 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 251,791
Number of extensions: 9386
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 18
Length of query: 68
Length of database: 2,407,596
Length adjustment: 37
Effective length of query: 31
Effective length of database: 1,899,586
Effective search space: 58887166
Effective search space used: 58887166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.6 bits)