BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13052
(533 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SRQ|A Chain A, Crystal Structure Of The Rap1gap Catalytic Domain
pdb|1SRQ|B Chain B, Crystal Structure Of The Rap1gap Catalytic Domain
pdb|1SRQ|C Chain C, Crystal Structure Of The Rap1gap Catalytic Domain
pdb|1SRQ|D Chain D, Crystal Structure Of The Rap1gap Catalytic Domain
Length = 341
Score = 387 bits (993), Expect = e-107, Method: Compositional matrix adjust.
Identities = 189/338 (55%), Positives = 243/338 (71%), Gaps = 2/338 (0%)
Query: 70 RSKIECDDTAKCYRRFFLGREHSNFVGVDNELGPVLLSTKTELVGNQSHTRLLLRLKTGT 129
+ K+EC+ TA+ YR+ FLG+EH N+ +D LG ++ S K +++G+Q H RLLLR K T
Sbjct: 4 KVKLECNPTARIYRKHFLGKEHFNYYSLDTALGHLVFSLKYDVIGDQEHLRLLLRTKCRT 63
Query: 130 VHELLPPNCANASPQT--MARLVNEQLTCSSLTPVLCPQASSLIAAYDEHVLVSQFKFGV 187
H+++P +C P MA+LV E + PVL P+AS LI +DEHV+ + FKFGV
Sbjct: 64 YHDVIPISCLTEFPNVVQMAKLVCEDVNVDRFYPVLYPKASRLIVTFDEHVISNNFKFGV 123
Query: 188 LYQRHGQITEEELFANKHTSPAFDQFLNLLGQRILLKDHKGYRGGLDTQFRQTGEQAVYQ 247
+YQ+ GQ +EEELF+ SPAF +FL LGQ++ L+D KG+RGGLD QTG ++VY
Sbjct: 124 IYQKLGQTSEEELFSTNEESPAFVEFLEFLGQKVKLQDFKGFRGGLDVTHGQTGTESVYC 183
Query: 248 VFKEREIMFHVSTLLPFTENDPQQLQRKRHIGNDIVAIVFQETNTPFSPDMIASHFLHAF 307
F+ +EIMFHVST LP+TE D QQLQRKRHIGNDIVA+VFQ+ NTPF PDMIAS+FLHA+
Sbjct: 184 NFRNKEIMFHVSTKLPYTEGDAQQLQRKRHIGNDIVAVVFQDENTPFVPDMIASNFLHAY 243
Query: 308 IVVQVIDPNTPNTRYKVSVTARDDVPFFGPNFPQPAIFRADSDFKEFLLTKLINAENAAY 367
+VVQ YKVSVTARDDVPFFGP P PA+FR +F+EFLLTKLINAE A Y
Sbjct: 244 VVVQAEGGGPDGPLYKVSVTARDDVPFFGPPLPDPAVFRKGPEFQEFLLTKLINAEYACY 303
Query: 368 KAHKFAKLELRTRSSLLHSLCEELKEKTREFLGGEGED 405
KA KFAKLE RTR++LL +L EEL ++ +G G++
Sbjct: 304 KAEKFAKLEERTRAALLETLYEELHIHSQSMMGLGGDE 341
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%)
Query: 421 FIDTEHSNFVGVDNELGPVLLSTKTELVGNQSHTRLLLRLKTGTVHELLPPNCANASPQT 480
F+ EH N+ +D LG ++ S K +++G+Q H RLLLR K T H+++P +C P
Sbjct: 20 FLGKEHFNYYSLDTALGHLVFSLKYDVIGDQEHLRLLLRTKCRTYHDVIPISCLTEFPNV 79
Query: 481 M 481
+
Sbjct: 80 V 80
>pdb|3BRW|A Chain A, Structure Of The Rap-Rapgap Complex
pdb|3BRW|B Chain B, Structure Of The Rap-Rapgap Complex
pdb|3BRW|C Chain C, Structure Of The Rap-Rapgap Complex
Length = 341
Score = 384 bits (987), Expect = e-107, Method: Compositional matrix adjust.
Identities = 188/338 (55%), Positives = 242/338 (71%), Gaps = 2/338 (0%)
Query: 70 RSKIECDDTAKCYRRFFLGREHSNFVGVDNELGPVLLSTKTELVGNQSHTRLLLRLKTGT 129
+ K+EC+ TA+ YR+ FLG+EH N+ +D LG ++ S K +++G+Q H RLLLR K T
Sbjct: 4 KVKLECNPTARIYRKHFLGKEHFNYYSLDTALGHLVFSLKYDVIGDQEHLRLLLRTKCRT 63
Query: 130 VHELLPPNCANASPQT--MARLVNEQLTCSSLTPVLCPQASSLIAAYDEHVLVSQFKFGV 187
H+++P +C P MA+LV E + PVL P+AS LI +DEHV+ + FKFGV
Sbjct: 64 YHDVIPISCLTEFPNVVQMAKLVCEDVNVDRFYPVLYPKASRLIVTFDEHVISNNFKFGV 123
Query: 188 LYQRHGQITEEELFANKHTSPAFDQFLNLLGQRILLKDHKGYRGGLDTQFRQTGEQAVYQ 247
+YQ+ G +EEELF+ SPAF +FL LGQ++ L+D KG+RGGLD QTG ++VY
Sbjct: 124 IYQKLGATSEEELFSTNEESPAFVEFLEFLGQKVKLQDFKGFRGGLDVTHGQTGTESVYC 183
Query: 248 VFKEREIMFHVSTLLPFTENDPQQLQRKRHIGNDIVAIVFQETNTPFSPDMIASHFLHAF 307
F+ +EIMFHVST LP+TE D QQLQRKRHIGNDIVA+VFQ+ NTPF PDMIAS+FLHA+
Sbjct: 184 NFRNKEIMFHVSTKLPYTEGDAQQLQRKRHIGNDIVAVVFQDENTPFVPDMIASNFLHAY 243
Query: 308 IVVQVIDPNTPNTRYKVSVTARDDVPFFGPNFPQPAIFRADSDFKEFLLTKLINAENAAY 367
+VVQ YKVSVTARDDVPFFGP P PA+FR +F+EFLLTKLINAE A Y
Sbjct: 244 VVVQAEGGGPDGPLYKVSVTARDDVPFFGPPLPDPAVFRKGPEFQEFLLTKLINAEYACY 303
Query: 368 KAHKFAKLELRTRSSLLHSLCEELKEKTREFLGGEGED 405
KA KFAKLE RTR++LL +L EEL ++ +G G++
Sbjct: 304 KAEKFAKLEERTRAALLETLYEELHIHSQSMMGLGGDE 341
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%)
Query: 421 FIDTEHSNFVGVDNELGPVLLSTKTELVGNQSHTRLLLRLKTGTVHELLPPNCANASPQT 480
F+ EH N+ +D LG ++ S K +++G+Q H RLLLR K T H+++P +C P
Sbjct: 20 FLGKEHFNYYSLDTALGHLVFSLKYDVIGDQEHLRLLLRTKCRTYHDVIPISCLTEFPNV 79
Query: 481 M 481
+
Sbjct: 80 V 80
>pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
pdb|3NX3|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
Length = 395
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 240 TGEQAVYQVFKEREIMFHVSTLLPFTENDPQQL 272
G AV+++FKE +I+ +V+ L P+ E +L
Sbjct: 287 AGVNAVFEIFKEEKILENVNKLTPYLEQSLDEL 319
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,875,963
Number of Sequences: 62578
Number of extensions: 652792
Number of successful extensions: 1299
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1291
Number of HSP's gapped (non-prelim): 8
length of query: 533
length of database: 14,973,337
effective HSP length: 103
effective length of query: 430
effective length of database: 8,527,803
effective search space: 3666955290
effective search space used: 3666955290
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)